Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1304790 | sp|Q54XK2|SC61A_DICDI | 74.183 | 306 | 79 | 0 | 4 | 309 | 2 | 307 | 1.16e-169 | 482 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1304790 | A0A2K3NFT6 | 100.000 | 309 | 0 | 0 | 1 | 309 | 1 | 309 | 0.0 | 619 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0037180 | Msa1304790 | 0.856385 | 3.333610e-62 | -8.615850e-47 |
Msa0037280 | Msa1304790 | 0.811946 | 5.428452e-51 | -8.615850e-47 |
Msa0037720 | Msa1304790 | 0.804228 | 2.389548e-49 | -8.615850e-47 |
Msa0092220 | Msa1304790 | 0.858117 | 1.026490e-62 | -8.615850e-47 |
Msa0093740 | Msa1304790 | 0.801408 | 9.133699e-49 | -8.615850e-47 |
Msa0611220 | Msa1304790 | 0.814191 | 1.746880e-51 | -8.615850e-47 |
Msa0614480 | Msa1304790 | 0.890587 | 8.608241e-74 | -8.615850e-47 |
Msa0615780 | Msa1304790 | 0.808262 | 3.377401e-50 | -8.615850e-47 |
Msa0616580 | Msa1304790 | 0.838926 | 2.151647e-57 | -8.615850e-47 |
Msa0639110 | Msa1304790 | 0.837603 | 4.715195e-57 | -8.615850e-47 |
Msa0660650 | Msa1304790 | 0.809393 | 1.934318e-50 | -8.615850e-47 |
Msa0672980 | Msa1304790 | 0.802579 | 5.247720e-49 | -8.615850e-47 |
Msa0682110 | Msa1304790 | 0.813506 | 2.473384e-51 | -8.615850e-47 |
Msa0682160 | Msa1304790 | 0.823040 | 1.715306e-53 | -8.615850e-47 |
Msa0684150 | Msa1304790 | 0.818172 | 2.251481e-52 | -8.615850e-47 |
Msa0693880 | Msa1304790 | 0.842150 | 3.082917e-58 | -8.615850e-47 |
Msa0695140 | Msa1304790 | 0.832254 | 1.049738e-55 | -8.615850e-47 |
Msa0695760 | Msa1304790 | 0.847564 | 1.067676e-59 | -8.615850e-47 |
Msa0698280 | Msa1304790 | 0.814666 | 1.371638e-51 | -8.615850e-47 |
Msa0699910 | Msa1304790 | 0.826312 | 2.906756e-54 | -8.615850e-47 |
Msa0721930 | Msa1304790 | 0.839460 | 1.564252e-57 | -8.615850e-47 |
Msa0744440 | Msa1304790 | 0.819929 | 8.970667e-53 | -8.615850e-47 |
Msa0748360 | Msa1304790 | 0.803484 | 3.409612e-49 | -8.615850e-47 |
Msa0753270 | Msa1304790 | 0.808560 | 2.916324e-50 | -8.615850e-47 |
Msa0762930 | Msa1304790 | 0.839204 | 1.822481e-57 | -8.615850e-47 |
Msa0832520 | Msa1304790 | 0.805266 | 1.450614e-49 | -8.615850e-47 |
Msa0837000 | Msa1304790 | 0.801396 | 9.183091e-49 | -8.615850e-47 |
Msa0121830 | Msa1304790 | 0.807118 | 5.907419e-50 | -8.615850e-47 |
Msa0127910 | Msa1304790 | -0.803380 | 3.584000e-49 | -8.615850e-47 |
Msa0129640 | Msa1304790 | 0.804430 | 2.168836e-49 | -8.615850e-47 |
Msa0139910 | Msa1304790 | 0.805722 | 1.163466e-49 | -8.615850e-47 |
Msa0158270 | Msa1304790 | 0.801541 | 8.577031e-49 | -8.615850e-47 |
Msa0174060 | Msa1304790 | -0.809657 | 1.697944e-50 | -8.615850e-47 |
Msa0177320 | Msa1304790 | 0.875420 | 3.126422e-68 | -8.615850e-47 |
Msa0178000 | Msa1304790 | 0.809385 | 1.942789e-50 | -8.615850e-47 |
Msa0216150 | Msa1304790 | -0.813503 | 2.476227e-51 | -8.615850e-47 |
Msa0223400 | Msa1304790 | 0.827920 | 1.198093e-54 | -8.615850e-47 |
Msa0225070 | Msa1304790 | -0.803015 | 4.265362e-49 | -8.615850e-47 |
Msa1249600 | Msa1304790 | 0.842505 | 2.482295e-58 | -8.615850e-47 |
Msa1254910 | Msa1304790 | 0.884918 | 1.271125e-71 | -8.615850e-47 |
Msa1268230 | Msa1304790 | 0.800219 | 1.597292e-48 | -8.615850e-47 |
Msa1299200 | Msa1304790 | 0.841777 | 3.868052e-58 | -8.615850e-47 |
Msa1299220 | Msa1304790 | 0.801895 | 7.255821e-49 | -8.615850e-47 |
Msa1304790 | Msa1306250 | 0.827959 | 1.172456e-54 | -8.615850e-47 |
Msa1304790 | Msa1326180 | 0.832895 | 7.279455e-56 | -8.615850e-47 |
Msa1304790 | Msa1328240 | 0.810618 | 1.053951e-50 | -8.615850e-47 |
Msa1304790 | Msa1330400 | 0.805371 | 1.378606e-49 | -8.615850e-47 |
Msa1304790 | Msa1340440 | 0.801280 | 9.700677e-49 | -8.615850e-47 |
Msa1304790 | Msa1342360 | -0.809020 | 2.325252e-50 | -8.615850e-47 |
Msa1304790 | Msa1361040 | 0.817063 | 4.005123e-52 | -8.615850e-47 |
Msa1304790 | Msa1362200 | 0.802741 | 4.857500e-49 | -8.615850e-47 |
Msa1304790 | Msa1364970 | 0.816062 | 6.710279e-52 | -8.615850e-47 |
Msa1304790 | Msa1365820 | 0.823539 | 1.311958e-53 | -8.615850e-47 |
Msa1304790 | Msa1366480 | 0.832450 | 9.385975e-56 | -8.615850e-47 |
Msa1304790 | Msa1367460 | 0.824707 | 6.976851e-54 | -8.615850e-47 |
Msa1304790 | Msa1368400 | 0.813458 | 2.533686e-51 | -8.615850e-47 |
Msa1304790 | Msa1375130 | 0.839324 | 1.696507e-57 | -8.615850e-47 |
Msa1304790 | Msa1377980 | -0.810379 | 1.187143e-50 | -8.615850e-47 |
Msa1304790 | Msa1383190 | 0.807380 | 5.200752e-50 | -8.615850e-47 |
Msa1304790 | Msa1408280 | -0.808535 | 2.953140e-50 | -8.615850e-47 |
Msa1304790 | Msa1411370 | 0.813265 | 2.793478e-51 | -8.615850e-47 |
Msa1304790 | Msa1413150 | 0.859251 | 4.706843e-63 | -8.615850e-47 |
Msa1304790 | Msa1417600 | 0.819495 | 1.127130e-52 | -8.615850e-47 |
Msa1304790 | Msa1427860 | 0.812485 | 4.140501e-51 | -8.615850e-47 |
Msa1304790 | Msa1429470 | 0.861134 | 1.269535e-63 | -8.615850e-47 |
Msa1304790 | Msa1435550 | 0.818021 | 2.436101e-52 | -8.615850e-47 |
Msa1304790 | Msa1439860 | 0.810910 | 9.113798e-51 | -8.615850e-47 |
Msa1304790 | Msa1453430 | 0.868719 | 5.296736e-66 | -8.615850e-47 |
Msa0373140 | Msa1304790 | 0.855607 | 5.631912e-62 | -8.615850e-47 |
Msa0373550 | Msa1304790 | 0.826146 | 3.183980e-54 | -8.615850e-47 |
Msa0384830 | Msa1304790 | 0.803128 | 4.041516e-49 | -8.615850e-47 |
Msa0386880 | Msa1304790 | 0.807973 | 3.890483e-50 | -8.615850e-47 |
Msa0386890 | Msa1304790 | 0.814429 | 1.547388e-51 | -8.615850e-47 |
Msa0390590 | Msa1304790 | -0.805701 | 1.175573e-49 | -8.615850e-47 |
Msa0402800 | Msa1304790 | 0.812777 | 3.573386e-51 | -8.615850e-47 |
Msa0403740 | Msa1304790 | -0.805455 | 1.324209e-49 | -8.615850e-47 |
Msa0405200 | Msa1304790 | 0.812050 | 5.152244e-51 | -8.615850e-47 |
Msa0427560 | Msa1304790 | 0.807332 | 5.323580e-50 | -8.615850e-47 |
Msa0428210 | Msa1304790 | 0.869496 | 2.963860e-66 | -8.615850e-47 |
Msa0449620 | Msa1304790 | 0.807638 | 4.584491e-50 | -8.615850e-47 |
Msa0452770 | Msa1304790 | 0.809366 | 1.960614e-50 | -8.615850e-47 |
Msa0456450 | Msa1304790 | -0.808864 | 2.511334e-50 | -8.615850e-47 |
Msa0458220 | Msa1304790 | 0.831003 | 2.135250e-55 | -8.615850e-47 |
Msa0463970 | Msa1304790 | 0.828539 | 8.501118e-55 | -8.615850e-47 |
Msa0468660 | Msa1304790 | 0.804685 | 1.918813e-49 | -8.615850e-47 |
Msa0474570 | Msa1304790 | 0.829749 | 4.324523e-55 | -8.615850e-47 |
Msa0476600 | Msa1304790 | -0.814628 | 1.398765e-51 | -8.615850e-47 |
Msa0479260 | Msa1304790 | 0.805741 | 1.153250e-49 | -8.615850e-47 |
Msa1010440 | Msa1304790 | 0.862461 | 4.985862e-64 | -8.615850e-47 |
Msa1041250 | Msa1304790 | 0.837095 | 6.360779e-57 | -8.615850e-47 |
Msa1045870 | Msa1304790 | 0.812244 | 4.673439e-51 | -8.615850e-47 |
Msa1045960 | Msa1304790 | 0.811440 | 6.992509e-51 | -8.615850e-47 |
Msa1046880 | Msa1304790 | 0.814588 | 1.427437e-51 | -8.615850e-47 |
Msa1052000 | Msa1304790 | 0.889974 | 1.497384e-73 | -8.615850e-47 |
Msa1071230 | Msa1304790 | 0.812948 | 3.278394e-51 | -8.615850e-47 |
Msa1087420 | Msa1304790 | 0.806486 | 8.037476e-50 | -8.615850e-47 |
Msa1096760 | Msa1304790 | 0.875663 | 2.580937e-68 | -8.615850e-47 |
Msa0239560 | Msa1304790 | 0.846963 | 1.561091e-59 | -8.615850e-47 |
Msa0284730 | Msa1304790 | 0.800251 | 1.573389e-48 | -8.615850e-47 |
Msa0291150 | Msa1304790 | 0.802578 | 5.249772e-49 | -8.615850e-47 |
Msa0318490 | Msa1304790 | 0.811940 | 5.443444e-51 | -8.615850e-47 |
Msa0333770 | Msa1304790 | 0.806483 | 8.049797e-50 | -8.615850e-47 |
Msa0345050 | Msa1304790 | 0.815425 | 9.304768e-52 | -8.615850e-47 |
Msa0358470 | Msa1304790 | 0.811911 | 5.523108e-51 | -8.615850e-47 |
Msa0364030 | Msa1304790 | -0.804801 | 1.814389e-49 | -8.615850e-47 |
Msa1140410 | Msa1304790 | 0.882756 | 7.976701e-71 | -8.615850e-47 |
Msa1165590 | Msa1304790 | 0.801792 | 7.618936e-49 | -8.615850e-47 |
Msa1165630 | Msa1304790 | 0.811401 | 7.130367e-51 | -8.615850e-47 |
Msa1179340 | Msa1304790 | 0.839336 | 1.684128e-57 | -8.615850e-47 |
Msa1185270 | Msa1304790 | 0.807176 | 5.744375e-50 | -8.615850e-47 |
Msa1193910 | Msa1304790 | 0.816982 | 4.175882e-52 | -8.615850e-47 |
Msa1196110 | Msa1304790 | 0.823846 | 1.111632e-53 | -8.615850e-47 |
Msa1199870 | Msa1304790 | 0.825591 | 4.313203e-54 | -8.615850e-47 |
Msa1202470 | Msa1304790 | 0.902752 | 7.026712e-79 | -8.615850e-47 |
Msa1215390 | Msa1304790 | 0.842001 | 3.374982e-58 | -8.615850e-47 |
Msa0497860 | Msa1304790 | 0.822746 | 2.008487e-53 | -8.615850e-47 |
Msa0504700 | Msa1304790 | 0.812812 | 3.511779e-51 | -8.615850e-47 |
Msa0518190 | Msa1304790 | 0.803028 | 4.237825e-49 | -8.615850e-47 |
Msa0519150 | Msa1304790 | 0.804502 | 2.094751e-49 | -8.615850e-47 |
Msa0524260 | Msa1304790 | 0.827361 | 1.632782e-54 | -8.615850e-47 |
Msa0524370 | Msa1304790 | 0.812722 | 3.673718e-51 | -8.615850e-47 |
Msa0529650 | Msa1304790 | 0.811049 | 8.503661e-51 | -8.615850e-47 |
Msa0531050 | Msa1304790 | 0.818273 | 2.136074e-52 | -8.615850e-47 |
Msa0560460 | Msa1304790 | 0.828231 | 1.008271e-54 | -8.615850e-47 |
Msa0563440 | Msa1304790 | 0.831264 | 1.841894e-55 | -8.615850e-47 |
Msa0572730 | Msa1304790 | -0.819167 | 1.338691e-52 | -8.615850e-47 |
Msa0573950 | Msa1304790 | 0.801440 | 8.994122e-49 | -8.615850e-47 |
Msa0842750 | Msa1304790 | 0.814434 | 1.543950e-51 | -8.615850e-47 |
Msa0868610 | Msa1304790 | 0.851305 | 9.679082e-61 | -8.615850e-47 |
Msa0873880 | Msa1304790 | 0.816558 | 5.199303e-52 | -8.615850e-47 |
Msa0873910 | Msa1304790 | 0.808559 | 2.918924e-50 | -8.615850e-47 |
Msa0873940 | Msa1304790 | 0.818360 | 2.041102e-52 | -8.615850e-47 |
Msa0906680 | Msa1304790 | 0.805889 | 1.073602e-49 | -8.615850e-47 |
Msa0930080 | Msa1304790 | 0.817235 | 3.663106e-52 | -8.615850e-47 |
Msa0931550 | Msa1304790 | -0.807031 | 6.164594e-50 | -8.615850e-47 |
Msa0942390 | Msa1304790 | 0.800086 | 1.699339e-48 | -8.615850e-47 |
Msa0975950 | Msa1304790 | 0.813744 | 2.191971e-51 | -8.615850e-47 |
Msa0975960 | Msa1304790 | 0.833537 | 5.037865e-56 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1304790 | MtrunA17_Chr8g0372551 | 100.000 | 309 | 0 | 0 | 1 | 309 | 1 | 309 | 0.0 | 619 |
Msa1304790 | MtrunA17_Chr8g0359731 | 99.676 | 309 | 1 | 0 | 1 | 309 | 1 | 309 | 0.0 | 618 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1304790 | AT2G34250.2 | 95.793 | 309 | 13 | 0 | 1 | 309 | 1 | 309 | 0.0 | 602 |
Msa1304790 | AT2G34250.3 | 95.793 | 309 | 13 | 0 | 1 | 309 | 1 | 309 | 0.0 | 602 |
Msa1304790 | AT2G34250.1 | 95.793 | 309 | 13 | 0 | 1 | 309 | 1 | 309 | 0.0 | 602 |
Msa1304790 | AT1G29310.1 | 95.146 | 309 | 15 | 0 | 1 | 309 | 1 | 309 | 0.0 | 599 |
Msa1304790 | AT1G29310.2 | 95.146 | 309 | 15 | 0 | 1 | 309 | 1 | 309 | 0.0 | 599 |
Msa1304790 | AT1G78720.3 | 93.204 | 309 | 21 | 0 | 1 | 309 | 1 | 309 | 0.0 | 586 |
Msa1304790 | AT1G78720.2 | 93.204 | 309 | 21 | 0 | 1 | 309 | 1 | 309 | 0.0 | 586 |
Msa1304790 | AT1G78720.1 | 93.204 | 309 | 21 | 0 | 1 | 309 | 1 | 309 | 0.0 | 586 |
Find 94 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAAGATGGGTGGTGGGTTT+AGG | 0.136040 | 8_3:+67958190 | Msa1304790:exon |
GCAGTTGCCTATGTTCTTTC+AGG | 0.146561 | 8_3:+67959097 | Msa1304790:CDS |
CGAGCATTCTTTGACCTTAC+AGG | 0.193127 | 8_3:-67959650 | None:intergenic |
ATCACTCCTATTGTCACTTC+TGG | 0.196349 | 8_3:+67958441 | Msa1304790:CDS |
TAAGATGGGTGGTGGGTTTA+GGG | 0.208117 | 8_3:+67958191 | Msa1304790:exon |
TGGGCTGGTCATGCAGCTTT+TGG | 0.236232 | 8_3:+67958461 | Msa1304790:CDS |
TTTACAGTGAAAACATTATA+TGG | 0.278546 | 8_3:+67959411 | Msa1304790:intron |
AGCTCCACGTCCACTGTTAA+TGG | 0.280671 | 8_3:-67959453 | None:intergenic |
AACAGTTGACTACAATTAAA+AGG | 0.281121 | 8_3:+67957706 | None:intergenic |
TGTAGTCAGCTTCCTCTATA+TGG | 0.291177 | 8_3:+67958333 | Msa1304790:CDS |
TTAGATGAGCTTCTTCAAAA+AGG | 0.307998 | 8_3:+67959208 | Msa1304790:CDS |
TATATGACCTTCTCTCTAAA+TGG | 0.311984 | 8_3:-67958279 | None:intergenic |
CTGTCAGCAGTCTGAACTTC+GGG | 0.330487 | 8_3:-67958249 | None:intergenic |
CTTGGAAGTATATCACAATT+AGG | 0.332365 | 8_3:-67959610 | None:intergenic |
AAAGGATATGGTCTTGGTTC+GGG | 0.354944 | 8_3:+67959226 | Msa1304790:CDS |
AAGAGCAGACTGAAGAATAA+TGG | 0.359294 | 8_3:-67959723 | None:intergenic |
AGATATTAGTCGCTATGAAT+AGG | 0.367590 | 8_3:-67959255 | None:intergenic |
GAGGTATAGAACAGTTTGAT+TGG | 0.375522 | 8_3:-67959692 | None:intergenic |
AAAAGGATATGGTCTTGGTT+CGG | 0.400084 | 8_3:+67959225 | Msa1304790:CDS |
TATTCATAGCGACTAATATC+TGG | 0.405102 | 8_3:+67959257 | Msa1304790:CDS |
CAGGTGCAGATCCGTTCTAT+TGG | 0.409468 | 8_3:+67958370 | Msa1304790:CDS |
GATATTAGTCGCTATGAATA+GGG | 0.410097 | 8_3:-67959254 | None:intergenic |
CTGAAAGAAAATAGCAGAAC+GGG | 0.412702 | 8_3:-67957783 | None:intergenic |
CAACAATGTGCGAGAGGATC+GGG | 0.412985 | 8_3:+67958509 | Msa1304790:CDS |
CAGTTGCCTATGTTCTTTCA+GGG | 0.417256 | 8_3:+67959098 | Msa1304790:CDS |
TCCTATTGTCACTTCTGGGC+TGG | 0.425191 | 8_3:+67958446 | Msa1304790:CDS |
TATGTTCTTTCAGGGATGTA+TGG | 0.425856 | 8_3:+67959106 | Msa1304790:CDS |
TCACTCCTATTGTCACTTCT+GGG | 0.432697 | 8_3:+67958442 | Msa1304790:CDS |
AGAGCAGACTGAAGAATAAT+GGG | 0.438369 | 8_3:-67959722 | None:intergenic |
CGTGGAACTGTCATGGAGCT+TGG | 0.440078 | 8_3:+67958417 | Msa1304790:CDS |
GCAAGGAGATTTGTCACATT+GGG | 0.440920 | 8_3:-67959572 | None:intergenic |
CTGTTCTAGTTATCAACAAA+TGG | 0.444560 | 8_3:-67959505 | None:intergenic |
CTGGGAGATAAAGTAGAGAT+TGG | 0.445182 | 8_3:-67959750 | None:intergenic |
TAGTTTGATAAGATGGGTGG+TGG | 0.446861 | 8_3:+67958183 | Msa1304790:exon |
GTAGTCAGCTTCCTCTATAT+GGG | 0.450305 | 8_3:+67958334 | Msa1304790:CDS |
ACGTCCACTGTTAATGGTGG+TGG | 0.452014 | 8_3:-67959447 | None:intergenic |
AAAGAATGCTCGTGGACAGC+AGG | 0.458072 | 8_3:+67959661 | Msa1304790:CDS |
TGACTACAATTAAAAGGAAA+AGG | 0.466342 | 8_3:+67957712 | Msa1304790:five_prime_UTR |
TTCAGGGATGTATGGTAGTG+TGG | 0.482405 | 8_3:+67959114 | Msa1304790:CDS |
TATGGGATACACTCGACAAC+AGG | 0.491096 | 8_3:+67958351 | Msa1304790:CDS |
GCAAAACCACACGGAAACCT+TGG | 0.494750 | 8_3:-67959628 | None:intergenic |
CAATCTCTACTTTATCTCCC+AGG | 0.496621 | 8_3:+67959751 | Msa1304790:CDS |
CCTGTCAGCAGTCTGAACTT+CGG | 0.503278 | 8_3:-67958250 | None:intergenic |
AACGGAGCACAGAAGCTACT+TGG | 0.503865 | 8_3:+67959052 | Msa1304790:CDS |
AAGAATAATGGGCATGTTGG+AGG | 0.506203 | 8_3:-67959711 | None:intergenic |
TATGGTAGTGTGGGCCAACT+TGG | 0.506306 | 8_3:+67959124 | Msa1304790:CDS |
ATTGACATAGTTTGATAAGA+TGG | 0.514812 | 8_3:+67958176 | Msa1304790:exon |
CTGAAGAATAATGGGCATGT+TGG | 0.515561 | 8_3:-67959714 | None:intergenic |
GTCGAGTGTATCCCATATAG+AGG | 0.521776 | 8_3:-67958345 | None:intergenic |
CGGGAAGACGACGAAGATCC+CGG | 0.524449 | 8_3:-67957764 | None:intergenic |
ACGACGAAGATCCCGGTGAG+TGG | 0.524464 | 8_3:-67957757 | None:intergenic |
TTGACATAGTTTGATAAGAT+GGG | 0.527691 | 8_3:+67958177 | Msa1304790:exon |
ACCAGCCCAGAAGTGACAAT+AGG | 0.537532 | 8_3:-67958447 | None:intergenic |
CTAATTGTGATATACTTCCA+AGG | 0.539046 | 8_3:+67959611 | Msa1304790:CDS |
ACAACAATGTGCGAGAGGAT+CGG | 0.542537 | 8_3:+67958508 | Msa1304790:CDS |
TCAGGGATGTATGGTAGTGT+GGG | 0.544571 | 8_3:+67959115 | Msa1304790:CDS |
CCGAAGTTCAGACTGCTGAC+AGG | 0.544729 | 8_3:+67958250 | Msa1304790:CDS |
CAGTTCCACGGTTTGAAGCA+AGG | 0.547496 | 8_3:-67958404 | None:intergenic |
CAGTGAAAACATTATATGGA+AGG | 0.562189 | 8_3:+67959415 | Msa1304790:intron |
TCTGATATCTCTCCACTCAC+CGG | 0.562269 | 8_3:+67957745 | Msa1304790:five_prime_UTR |
CTGATATCTCTCCACTCACC+GGG | 0.562757 | 8_3:+67957746 | Msa1304790:five_prime_UTR |
AGTTTGATAAGATGGGTGGT+GGG | 0.564289 | 8_3:+67958184 | Msa1304790:exon |
AGCAAGGAGATTTGTCACAT+TGG | 0.565195 | 8_3:-67959573 | None:intergenic |
TAGCATTTCCCACTCCAAGT+TGG | 0.570311 | 8_3:-67959138 | None:intergenic |
GGACGTGGAGCTGAGTTTGA+AGG | 0.571398 | 8_3:+67959464 | Msa1304790:CDS |
TCGGGAAGGAACGAGAGAAA+CGG | 0.578024 | 8_3:-67958231 | None:intergenic |
TCACATTGGGAAGATTCTGC+CGG | 0.580213 | 8_3:-67959559 | None:intergenic |
CAAGCTCCATGACAGTTCCA+CGG | 0.581913 | 8_3:-67958416 | None:intergenic |
CTACAATTAAAAGGAAAAGG+AGG | 0.583867 | 8_3:+67957715 | Msa1304790:five_prime_UTR |
GTTATCCTTGCTTCAAACCG+TGG | 0.587811 | 8_3:+67958399 | Msa1304790:CDS |
TGGATCAAAGATTATTGAAG+TGG | 0.589065 | 8_3:+67958485 | Msa1304790:CDS |
TACAATTAAAAGGAAAAGGA+GGG | 0.589599 | 8_3:+67957716 | Msa1304790:five_prime_UTR |
CGTCCACTGTTAATGGTGGT+GGG | 0.594920 | 8_3:-67959446 | None:intergenic |
TTCAAACCGTGGAACTGTCA+TGG | 0.595719 | 8_3:+67958410 | Msa1304790:CDS |
ATACATCCCTGAAAGAACAT+AGG | 0.595738 | 8_3:-67959104 | None:intergenic |
ACCTTACAGGCAAAACCACA+CGG | 0.598007 | 8_3:-67959637 | None:intergenic |
ACCACCATTAACAGTGGACG+TGG | 0.603265 | 8_3:+67959449 | Msa1304790:CDS |
GAAAGTGCCATTTAGAGAGA+AGG | 0.605927 | 8_3:+67958272 | Msa1304790:CDS |
TAGTGTGGGCCAACTTGGAG+TGG | 0.608290 | 8_3:+67959129 | Msa1304790:CDS |
CCTGAAAGAAAATAGCAGAA+CGG | 0.612825 | 8_3:-67957784 | None:intergenic |
GTAAGGTCAAAGAATGCTCG+TGG | 0.613013 | 8_3:+67959653 | Msa1304790:CDS |
CAAGGTTCGTGCTCTTCGTG+AGG | 0.624324 | 8_3:+67959529 | Msa1304790:CDS |
AGTGTGGGCCAACTTGGAGT+GGG | 0.625808 | 8_3:+67959130 | Msa1304790:CDS |
AAGAATGCTCGTGGACAGCA+GGG | 0.628905 | 8_3:+67959662 | Msa1304790:CDS |
GGAAGATCAAGACAGTAGCA+AGG | 0.630553 | 8_3:-67959589 | None:intergenic |
CAGCAGTCTGAACTTCGGGA+AGG | 0.631153 | 8_3:-67958245 | None:intergenic |
AAAAGAGCTGGACAATGATG+AGG | 0.635714 | 8_3:-67959162 | None:intergenic |
TCCACGTCCACTGTTAATGG+TGG | 0.651847 | 8_3:-67959450 | None:intergenic |
ATAACACGCATCCAATAGAA+CGG | 0.657362 | 8_3:-67958381 | None:intergenic |
GTTGATAACTAGAACAGACA+AGG | 0.670921 | 8_3:+67959511 | Msa1304790:CDS |
AGTCCCACCACCATTAACAG+TGG | 0.677883 | 8_3:+67959443 | Msa1304790:CDS |
AGTGGACAACAATGTGCGAG+AGG | 0.687698 | 8_3:+67958503 | Msa1304790:CDS |
ATACTTCCAAGGTTTCCGTG+TGG | 0.697491 | 8_3:+67959622 | Msa1304790:CDS |
ACATAGTTTGATAAGATGGG+TGG | 0.698995 | 8_3:+67958180 | Msa1304790:exon |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GGTATAAAATATAATTTATC+TGG | + | chr8_3:67958922-67958941 | Msa1304790:intron | 15.0% |
!! | GGTATAAAATATAATTTATC+TGG | + | chr8_3:67958922-67958941 | Msa1304790:intron | 15.0% |
!! | TGAATAAATCCATATTAGAT+TGG | + | chr8_3:67957949-67957968 | Msa1304790:intron | 20.0% |
!!! | ATGAAAAATCTGAAATAACT+GGG | + | chr8_3:67958108-67958127 | Msa1304790:intron | 20.0% |
!!! | TGATTTAAATACCTTTTCTA+TGG | + | chr8_3:67959025-67959044 | Msa1304790:intron | 20.0% |
!!! | TCTTCTAAGTTTTAGATAAA+AGG | - | chr8_3:67959377-67959396 | None:intergenic | 20.0% |
!! | TTTACAGTGAAAACATTATA+TGG | + | chr8_3:67959411-67959430 | Msa1304790:intron | 20.0% |
!! | TGAATAAATCCATATTAGAT+TGG | + | chr8_3:67957949-67957968 | Msa1304790:intron | 20.0% |
!!! | ATGAAAAATCTGAAATAACT+GGG | + | chr8_3:67958108-67958127 | Msa1304790:intron | 20.0% |
!!! | TGATTTAAATACCTTTTCTA+TGG | + | chr8_3:67959025-67959044 | Msa1304790:intron | 20.0% |
!!! | TCTTCTAAGTTTTAGATAAA+AGG | - | chr8_3:67959377-67959396 | None:intergenic | 20.0% |
!! | TTTACAGTGAAAACATTATA+TGG | + | chr8_3:67959411-67959430 | Msa1304790:intron | 20.0% |
! | TGACTACAATTAAAAGGAAA+AGG | + | chr8_3:67957712-67957731 | Msa1304790:five_prime_UTR | 25.0% |
! | TACAATTAAAAGGAAAAGGA+GGG | + | chr8_3:67957716-67957735 | Msa1304790:five_prime_UTR | 25.0% |
! | AATATAATCGCATGCAATAT+AGG | - | chr8_3:67957904-67957923 | None:intergenic | 25.0% |
! | TATTCATCAGATTATTCAGA+TGG | - | chr8_3:67957935-67957954 | None:intergenic | 25.0% |
! | GTAATCAAACCAATCTAATA+TGG | - | chr8_3:67957961-67957980 | None:intergenic | 25.0% |
!! | AAAAATTTTCAGTTCATCTG+AGG | + | chr8_3:67958035-67958054 | Msa1304790:intron | 25.0% |
!!! | CAGTTATTTCAGATTTTTCA+TGG | - | chr8_3:67958109-67958128 | None:intergenic | 25.0% |
!! | CATGAAAAATCTGAAATAAC+TGG | + | chr8_3:67958107-67958126 | Msa1304790:intron | 25.0% |
! | ATTGACATAGTTTGATAAGA+TGG | + | chr8_3:67958176-67958195 | Msa1304790:exon | 25.0% |
! | TTGACATAGTTTGATAAGAT+GGG | + | chr8_3:67958177-67958196 | Msa1304790:exon | 25.0% |
! | ATCAGTTATGTGTTTACATT+AGG | + | chr8_3:67958773-67958792 | Msa1304790:intron | 25.0% |
!! | TTTTATACCCCTTTAAATGA+AGG | - | chr8_3:67958911-67958930 | None:intergenic | 25.0% |
!! | TATGAGGTTTTCACTATTTA+GGG | + | chr8_3:67958975-67958994 | Msa1304790:intron | 25.0% |
! | AAAATTTCAAAGACTAAAGC+TGG | - | chr8_3:67959315-67959334 | None:intergenic | 25.0% |
! | TGACTACAATTAAAAGGAAA+AGG | + | chr8_3:67957712-67957731 | Msa1304790:five_prime_UTR | 25.0% |
! | TACAATTAAAAGGAAAAGGA+GGG | + | chr8_3:67957716-67957735 | Msa1304790:five_prime_UTR | 25.0% |
! | AATATAATCGCATGCAATAT+AGG | - | chr8_3:67957904-67957923 | None:intergenic | 25.0% |
! | TATTCATCAGATTATTCAGA+TGG | - | chr8_3:67957935-67957954 | None:intergenic | 25.0% |
! | GTAATCAAACCAATCTAATA+TGG | - | chr8_3:67957961-67957980 | None:intergenic | 25.0% |
!! | AAAAATTTTCAGTTCATCTG+AGG | + | chr8_3:67958035-67958054 | Msa1304790:intron | 25.0% |
!!! | CAGTTATTTCAGATTTTTCA+TGG | - | chr8_3:67958109-67958128 | None:intergenic | 25.0% |
!! | CATGAAAAATCTGAAATAAC+TGG | + | chr8_3:67958107-67958126 | Msa1304790:intron | 25.0% |
! | ATTGACATAGTTTGATAAGA+TGG | + | chr8_3:67958176-67958195 | Msa1304790:exon | 25.0% |
! | TTGACATAGTTTGATAAGAT+GGG | + | chr8_3:67958177-67958196 | Msa1304790:exon | 25.0% |
! | ATCAGTTATGTGTTTACATT+AGG | + | chr8_3:67958773-67958792 | Msa1304790:intron | 25.0% |
!! | TTTTATACCCCTTTAAATGA+AGG | - | chr8_3:67958911-67958930 | None:intergenic | 25.0% |
!! | TATGAGGTTTTCACTATTTA+GGG | + | chr8_3:67958975-67958994 | Msa1304790:intron | 25.0% |
! | AAAATTTCAAAGACTAAAGC+TGG | - | chr8_3:67959315-67959334 | None:intergenic | 25.0% |
CTACAATTAAAAGGAAAAGG+AGG | + | chr8_3:67957715-67957734 | Msa1304790:five_prime_UTR | 30.0% | |
TATATGACCTTCTCTCTAAA+TGG | - | chr8_3:67958282-67958301 | None:intergenic | 30.0% | |
! | GATCTCTCTTTTCATTTTCT+TGG | + | chr8_3:67958308-67958327 | Msa1304790:CDS | 30.0% |
TGGATCAAAGATTATTGAAG+TGG | + | chr8_3:67958485-67958504 | Msa1304790:CDS | 30.0% | |
AAAGAACGACACTTACAAAA+GGG | - | chr8_3:67958535-67958554 | None:intergenic | 30.0% | |
ACATGCATTCCTTCATTTAA+AGG | + | chr8_3:67958899-67958918 | Msa1304790:intron | 30.0% | |
CATGCATTCCTTCATTTAAA+GGG | + | chr8_3:67958900-67958919 | Msa1304790:intron | 30.0% | |
ATGCATTCCTTCATTTAAAG+GGG | + | chr8_3:67958901-67958920 | Msa1304790:intron | 30.0% | |
! | CTATGAGGTTTTCACTATTT+AGG | + | chr8_3:67958974-67958993 | Msa1304790:intron | 30.0% |
TTAGATGAGCTTCTTCAAAA+AGG | + | chr8_3:67959208-67959227 | Msa1304790:CDS | 30.0% | |
GATATTAGTCGCTATGAATA+GGG | - | chr8_3:67959257-67959276 | None:intergenic | 30.0% | |
AGATATTAGTCGCTATGAAT+AGG | - | chr8_3:67959258-67959277 | None:intergenic | 30.0% | |
TATTCATAGCGACTAATATC+TGG | + | chr8_3:67959257-67959276 | Msa1304790:CDS | 30.0% | |
TTTAGCAATTATTAACCACC+AGG | + | chr8_3:67959343-67959362 | Msa1304790:intron | 30.0% | |
TTAGCAATTATTAACCACCA+GGG | + | chr8_3:67959344-67959363 | Msa1304790:intron | 30.0% | |
CAGTGAAAACATTATATGGA+AGG | + | chr8_3:67959415-67959434 | Msa1304790:intron | 30.0% | |
! | CTGTTCTAGTTATCAACAAA+TGG | - | chr8_3:67959508-67959527 | None:intergenic | 30.0% |
! | CTTGGAAGTATATCACAATT+AGG | - | chr8_3:67959613-67959632 | None:intergenic | 30.0% |
CTAATTGTGATATACTTCCA+AGG | + | chr8_3:67959611-67959630 | Msa1304790:CDS | 30.0% | |
CTACAATTAAAAGGAAAAGG+AGG | + | chr8_3:67957715-67957734 | Msa1304790:five_prime_UTR | 30.0% | |
TATATGACCTTCTCTCTAAA+TGG | - | chr8_3:67958282-67958301 | None:intergenic | 30.0% | |
! | GATCTCTCTTTTCATTTTCT+TGG | + | chr8_3:67958308-67958327 | Msa1304790:CDS | 30.0% |
TGGATCAAAGATTATTGAAG+TGG | + | chr8_3:67958485-67958504 | Msa1304790:CDS | 30.0% | |
AAAGAACGACACTTACAAAA+GGG | - | chr8_3:67958535-67958554 | None:intergenic | 30.0% | |
ACATGCATTCCTTCATTTAA+AGG | + | chr8_3:67958899-67958918 | Msa1304790:intron | 30.0% | |
CATGCATTCCTTCATTTAAA+GGG | + | chr8_3:67958900-67958919 | Msa1304790:intron | 30.0% | |
ATGCATTCCTTCATTTAAAG+GGG | + | chr8_3:67958901-67958920 | Msa1304790:intron | 30.0% | |
! | CTATGAGGTTTTCACTATTT+AGG | + | chr8_3:67958974-67958993 | Msa1304790:intron | 30.0% |
TTAGATGAGCTTCTTCAAAA+AGG | + | chr8_3:67959208-67959227 | Msa1304790:CDS | 30.0% | |
GATATTAGTCGCTATGAATA+GGG | - | chr8_3:67959257-67959276 | None:intergenic | 30.0% | |
AGATATTAGTCGCTATGAAT+AGG | - | chr8_3:67959258-67959277 | None:intergenic | 30.0% | |
TATTCATAGCGACTAATATC+TGG | + | chr8_3:67959257-67959276 | Msa1304790:CDS | 30.0% | |
TTTAGCAATTATTAACCACC+AGG | + | chr8_3:67959343-67959362 | Msa1304790:intron | 30.0% | |
TTAGCAATTATTAACCACCA+GGG | + | chr8_3:67959344-67959363 | Msa1304790:intron | 30.0% | |
CAGTGAAAACATTATATGGA+AGG | + | chr8_3:67959415-67959434 | Msa1304790:intron | 30.0% | |
! | CTGTTCTAGTTATCAACAAA+TGG | - | chr8_3:67959508-67959527 | None:intergenic | 30.0% |
! | CTTGGAAGTATATCACAATT+AGG | - | chr8_3:67959613-67959632 | None:intergenic | 30.0% |
CTAATTGTGATATACTTCCA+AGG | + | chr8_3:67959611-67959630 | Msa1304790:CDS | 30.0% | |
CTGAAAGAAAATAGCAGAAC+GGG | - | chr8_3:67957786-67957805 | None:intergenic | 35.0% | |
CCTGAAAGAAAATAGCAGAA+CGG | - | chr8_3:67957787-67957806 | None:intergenic | 35.0% | |
TTCACTGCATGTAGCTATTA+AGG | + | chr8_3:67957996-67958015 | Msa1304790:intron | 35.0% | |
TCATCTGAGGAACTTTACAT+CGG | + | chr8_3:67958048-67958067 | Msa1304790:intron | 35.0% | |
!! | TGAATTTTGATGTGTGATGC+AGG | + | chr8_3:67958149-67958168 | Msa1304790:intron | 35.0% |
ACATAGTTTGATAAGATGGG+TGG | + | chr8_3:67958180-67958199 | Msa1304790:exon | 35.0% | |
ATAACACGCATCCAATAGAA+CGG | - | chr8_3:67958384-67958403 | None:intergenic | 35.0% | |
CAAAGAACGACACTTACAAA+AGG | - | chr8_3:67958536-67958555 | None:intergenic | 35.0% | |
ATCACAGTATATCCTACTCT+AGG | + | chr8_3:67958634-67958653 | Msa1304790:intron | 35.0% | |
CTGTTATATCTAGATGAGTC+AGG | + | chr8_3:67958685-67958704 | Msa1304790:intron | 35.0% | |
AATCATGTGATCACTGTAAC+AGG | - | chr8_3:67958720-67958739 | None:intergenic | 35.0% | |
ATGAAGGAATGCATGTCAAA+TGG | - | chr8_3:67958895-67958914 | None:intergenic | 35.0% | |
!! | TATCTGCTTTTGTCTCTATG+AGG | + | chr8_3:67958959-67958978 | Msa1304790:intron | 35.0% |
! | TACCTTTTCTATGGCAGAAA+CGG | + | chr8_3:67959034-67959053 | Msa1304790:intron | 35.0% |
!!! | CTTGGTATTTTGATAGCTGT+CGG | + | chr8_3:67959070-67959089 | Msa1304790:CDS | 35.0% |
ATACATCCCTGAAAGAACAT+AGG | - | chr8_3:67959107-67959126 | None:intergenic | 35.0% | |
TATGTTCTTTCAGGGATGTA+TGG | + | chr8_3:67959106-67959125 | Msa1304790:CDS | 35.0% | |
TAATACCTGCAAAAAAGAGC+TGG | - | chr8_3:67959177-67959196 | None:intergenic | 35.0% | |
GAGCTTCTTCAAAAAGGATA+TGG | + | chr8_3:67959214-67959233 | Msa1304790:CDS | 35.0% | |
CTTCAAAAAGGATATGGTCT+TGG | + | chr8_3:67959220-67959239 | Msa1304790:CDS | 35.0% | |
! | AAAAGGATATGGTCTTGGTT+CGG | + | chr8_3:67959225-67959244 | Msa1304790:CDS | 35.0% |
AGATAAAAGGTAATATGCCC+TGG | - | chr8_3:67959364-67959383 | None:intergenic | 35.0% | |
!! | GTTGATAACTAGAACAGACA+AGG | + | chr8_3:67959511-67959530 | Msa1304790:CDS | 35.0% |
GAGGTATAGAACAGTTTGAT+TGG | - | chr8_3:67959695-67959714 | None:intergenic | 35.0% | |
AGAGCAGACTGAAGAATAAT+GGG | - | chr8_3:67959725-67959744 | None:intergenic | 35.0% | |
AAGAGCAGACTGAAGAATAA+TGG | - | chr8_3:67959726-67959745 | None:intergenic | 35.0% | |
CTGAAAGAAAATAGCAGAAC+GGG | - | chr8_3:67957786-67957805 | None:intergenic | 35.0% | |
CCTGAAAGAAAATAGCAGAA+CGG | - | chr8_3:67957787-67957806 | None:intergenic | 35.0% | |
TTCACTGCATGTAGCTATTA+AGG | + | chr8_3:67957996-67958015 | Msa1304790:intron | 35.0% | |
TCATCTGAGGAACTTTACAT+CGG | + | chr8_3:67958048-67958067 | Msa1304790:intron | 35.0% | |
!! | TGAATTTTGATGTGTGATGC+AGG | + | chr8_3:67958149-67958168 | Msa1304790:intron | 35.0% |
ACATAGTTTGATAAGATGGG+TGG | + | chr8_3:67958180-67958199 | Msa1304790:exon | 35.0% | |
ATAACACGCATCCAATAGAA+CGG | - | chr8_3:67958384-67958403 | None:intergenic | 35.0% | |
CAAAGAACGACACTTACAAA+AGG | - | chr8_3:67958536-67958555 | None:intergenic | 35.0% | |
ATCACAGTATATCCTACTCT+AGG | + | chr8_3:67958634-67958653 | Msa1304790:intron | 35.0% | |
CTGTTATATCTAGATGAGTC+AGG | + | chr8_3:67958685-67958704 | Msa1304790:intron | 35.0% | |
AATCATGTGATCACTGTAAC+AGG | - | chr8_3:67958720-67958739 | None:intergenic | 35.0% | |
ATGAAGGAATGCATGTCAAA+TGG | - | chr8_3:67958895-67958914 | None:intergenic | 35.0% | |
!! | TATCTGCTTTTGTCTCTATG+AGG | + | chr8_3:67958959-67958978 | Msa1304790:intron | 35.0% |
! | TACCTTTTCTATGGCAGAAA+CGG | + | chr8_3:67959034-67959053 | Msa1304790:intron | 35.0% |
!!! | CTTGGTATTTTGATAGCTGT+CGG | + | chr8_3:67959070-67959089 | Msa1304790:CDS | 35.0% |
ATACATCCCTGAAAGAACAT+AGG | - | chr8_3:67959107-67959126 | None:intergenic | 35.0% | |
TATGTTCTTTCAGGGATGTA+TGG | + | chr8_3:67959106-67959125 | Msa1304790:CDS | 35.0% | |
TAATACCTGCAAAAAAGAGC+TGG | - | chr8_3:67959177-67959196 | None:intergenic | 35.0% | |
GAGCTTCTTCAAAAAGGATA+TGG | + | chr8_3:67959214-67959233 | Msa1304790:CDS | 35.0% | |
CTTCAAAAAGGATATGGTCT+TGG | + | chr8_3:67959220-67959239 | Msa1304790:CDS | 35.0% | |
! | AAAAGGATATGGTCTTGGTT+CGG | + | chr8_3:67959225-67959244 | Msa1304790:CDS | 35.0% |
AGATAAAAGGTAATATGCCC+TGG | - | chr8_3:67959364-67959383 | None:intergenic | 35.0% | |
!! | GTTGATAACTAGAACAGACA+AGG | + | chr8_3:67959511-67959530 | Msa1304790:CDS | 35.0% |
GAGGTATAGAACAGTTTGAT+TGG | - | chr8_3:67959695-67959714 | None:intergenic | 35.0% | |
AGAGCAGACTGAAGAATAAT+GGG | - | chr8_3:67959725-67959744 | None:intergenic | 35.0% | |
AAGAGCAGACTGAAGAATAA+TGG | - | chr8_3:67959726-67959745 | None:intergenic | 35.0% | |
!!! | CCGTTCTGCTATTTTCTTTC+AGG | + | chr8_3:67957784-67957803 | Msa1304790:five_prime_UTR | 40.0% |
TCTCTCTGCATGTGCAAATT+AGG | + | chr8_3:67957832-67957851 | Msa1304790:intron | 40.0% | |
CTCTCTGCATGTGCAAATTA+GGG | + | chr8_3:67957833-67957852 | Msa1304790:intron | 40.0% | |
GCATGCAATATAGGTAGATC+TGG | - | chr8_3:67957895-67957914 | None:intergenic | 40.0% | |
TAGTTTGATAAGATGGGTGG+TGG | + | chr8_3:67958183-67958202 | Msa1304790:exon | 40.0% | |
AGTTTGATAAGATGGGTGGT+GGG | + | chr8_3:67958184-67958203 | Msa1304790:exon | 40.0% | |
!! | GAAAGTGCCATTTAGAGAGA+AGG | + | chr8_3:67958272-67958291 | Msa1304790:CDS | 40.0% |
TGTAGTCAGCTTCCTCTATA+TGG | + | chr8_3:67958333-67958352 | Msa1304790:CDS | 40.0% | |
GTAGTCAGCTTCCTCTATAT+GGG | + | chr8_3:67958334-67958353 | Msa1304790:CDS | 40.0% | |
! | ATCACTCCTATTGTCACTTC+TGG | + | chr8_3:67958441-67958460 | Msa1304790:CDS | 40.0% |
! | TCACTCCTATTGTCACTTCT+GGG | + | chr8_3:67958442-67958461 | Msa1304790:CDS | 40.0% |
! | AAAACTACTGACGTTTGGTG+AGG | - | chr8_3:67958595-67958614 | None:intergenic | 40.0% |
CAGCTAAAACTACTGACGTT+TGG | - | chr8_3:67958600-67958619 | None:intergenic | 40.0% | |
!!! | CAAACGTCAGTAGTTTTAGC+TGG | + | chr8_3:67958598-67958617 | Msa1304790:intron | 40.0% |
CGTGTGATAAATCCTAGAGT+AGG | - | chr8_3:67958649-67958668 | None:intergenic | 40.0% | |
GGATTTATCACACGTGTGTA+TGG | + | chr8_3:67958655-67958674 | Msa1304790:intron | 40.0% | |
! | GAGGTTTTCACTATTTAGGG+TGG | + | chr8_3:67958978-67958997 | Msa1304790:intron | 40.0% |
!! | TTTTCACTATTTAGGGTGGC+TGG | + | chr8_3:67958982-67959001 | Msa1304790:intron | 40.0% |
!!! | TATTTTGATAGCTGTCGGAG+AGG | + | chr8_3:67959075-67959094 | Msa1304790:CDS | 40.0% |
CAGTTGCCTATGTTCTTTCA+GGG | + | chr8_3:67959098-67959117 | Msa1304790:CDS | 40.0% | |
AAAAGAGCTGGACAATGATG+AGG | - | chr8_3:67959165-67959184 | None:intergenic | 40.0% | |
!!! | ATTGTCCAGCTCTTTTTTGC+AGG | + | chr8_3:67959169-67959188 | Msa1304790:CDS | 40.0% |
! | AAAGGATATGGTCTTGGTTC+GGG | + | chr8_3:67959226-67959245 | Msa1304790:CDS | 40.0% |
CATAGCGACTAATATCTGGT+AGG | + | chr8_3:67959261-67959280 | Msa1304790:intron | 40.0% | |
TAAAAGGTAATATGCCCTGG+TGG | - | chr8_3:67959361-67959380 | None:intergenic | 40.0% | |
GCAAGGAGATTTGTCACATT+GGG | - | chr8_3:67959575-67959594 | None:intergenic | 40.0% | |
AGCAAGGAGATTTGTCACAT+TGG | - | chr8_3:67959576-67959595 | None:intergenic | 40.0% | |
!! | AAGAATAATGGGCATGTTGG+AGG | - | chr8_3:67959714-67959733 | None:intergenic | 40.0% |
!! | CTGAAGAATAATGGGCATGT+TGG | - | chr8_3:67959717-67959736 | None:intergenic | 40.0% |
CTGGGAGATAAAGTAGAGAT+TGG | - | chr8_3:67959753-67959772 | None:intergenic | 40.0% | |
CAATCTCTACTTTATCTCCC+AGG | + | chr8_3:67959751-67959770 | Msa1304790:CDS | 40.0% | |
!!! | CCGTTCTGCTATTTTCTTTC+AGG | + | chr8_3:67957784-67957803 | Msa1304790:five_prime_UTR | 40.0% |
TCTCTCTGCATGTGCAAATT+AGG | + | chr8_3:67957832-67957851 | Msa1304790:intron | 40.0% | |
CTCTCTGCATGTGCAAATTA+GGG | + | chr8_3:67957833-67957852 | Msa1304790:intron | 40.0% | |
GCATGCAATATAGGTAGATC+TGG | - | chr8_3:67957895-67957914 | None:intergenic | 40.0% | |
TAGTTTGATAAGATGGGTGG+TGG | + | chr8_3:67958183-67958202 | Msa1304790:exon | 40.0% | |
AGTTTGATAAGATGGGTGGT+GGG | + | chr8_3:67958184-67958203 | Msa1304790:exon | 40.0% | |
!! | GAAAGTGCCATTTAGAGAGA+AGG | + | chr8_3:67958272-67958291 | Msa1304790:CDS | 40.0% |
TGTAGTCAGCTTCCTCTATA+TGG | + | chr8_3:67958333-67958352 | Msa1304790:CDS | 40.0% | |
GTAGTCAGCTTCCTCTATAT+GGG | + | chr8_3:67958334-67958353 | Msa1304790:CDS | 40.0% | |
! | ATCACTCCTATTGTCACTTC+TGG | + | chr8_3:67958441-67958460 | Msa1304790:CDS | 40.0% |
! | TCACTCCTATTGTCACTTCT+GGG | + | chr8_3:67958442-67958461 | Msa1304790:CDS | 40.0% |
! | AAAACTACTGACGTTTGGTG+AGG | - | chr8_3:67958595-67958614 | None:intergenic | 40.0% |
CAGCTAAAACTACTGACGTT+TGG | - | chr8_3:67958600-67958619 | None:intergenic | 40.0% | |
!!! | CAAACGTCAGTAGTTTTAGC+TGG | + | chr8_3:67958598-67958617 | Msa1304790:intron | 40.0% |
CGTGTGATAAATCCTAGAGT+AGG | - | chr8_3:67958649-67958668 | None:intergenic | 40.0% | |
GGATTTATCACACGTGTGTA+TGG | + | chr8_3:67958655-67958674 | Msa1304790:intron | 40.0% | |
! | GAGGTTTTCACTATTTAGGG+TGG | + | chr8_3:67958978-67958997 | Msa1304790:intron | 40.0% |
!! | TTTTCACTATTTAGGGTGGC+TGG | + | chr8_3:67958982-67959001 | Msa1304790:intron | 40.0% |
!!! | TATTTTGATAGCTGTCGGAG+AGG | + | chr8_3:67959075-67959094 | Msa1304790:CDS | 40.0% |
CAGTTGCCTATGTTCTTTCA+GGG | + | chr8_3:67959098-67959117 | Msa1304790:CDS | 40.0% | |
AAAAGAGCTGGACAATGATG+AGG | - | chr8_3:67959165-67959184 | None:intergenic | 40.0% | |
!!! | ATTGTCCAGCTCTTTTTTGC+AGG | + | chr8_3:67959169-67959188 | Msa1304790:CDS | 40.0% |
! | AAAGGATATGGTCTTGGTTC+GGG | + | chr8_3:67959226-67959245 | Msa1304790:CDS | 40.0% |
CATAGCGACTAATATCTGGT+AGG | + | chr8_3:67959261-67959280 | Msa1304790:intron | 40.0% | |
TAAAAGGTAATATGCCCTGG+TGG | - | chr8_3:67959361-67959380 | None:intergenic | 40.0% | |
GCAAGGAGATTTGTCACATT+GGG | - | chr8_3:67959575-67959594 | None:intergenic | 40.0% | |
AGCAAGGAGATTTGTCACAT+TGG | - | chr8_3:67959576-67959595 | None:intergenic | 40.0% | |
!! | AAGAATAATGGGCATGTTGG+AGG | - | chr8_3:67959714-67959733 | None:intergenic | 40.0% |
!! | CTGAAGAATAATGGGCATGT+TGG | - | chr8_3:67959717-67959736 | None:intergenic | 40.0% |
CTGGGAGATAAAGTAGAGAT+TGG | - | chr8_3:67959753-67959772 | None:intergenic | 40.0% | |
TCTGATATCTCTCCACTCAC+CGG | + | chr8_3:67957745-67957764 | Msa1304790:five_prime_UTR | 45.0% | |
!! | ATAAGATGGGTGGTGGGTTT+AGG | + | chr8_3:67958190-67958209 | Msa1304790:exon | 45.0% |
!! | TAAGATGGGTGGTGGGTTTA+GGG | + | chr8_3:67958191-67958210 | Msa1304790:exon | 45.0% |
GTCGAGTGTATCCCATATAG+AGG | - | chr8_3:67958348-67958367 | None:intergenic | 45.0% | |
TATGGGATACACTCGACAAC+AGG | + | chr8_3:67958351-67958370 | Msa1304790:CDS | 45.0% | |
GTTATCCTTGCTTCAAACCG+TGG | + | chr8_3:67958399-67958418 | Msa1304790:CDS | 45.0% | |
TTCAAACCGTGGAACTGTCA+TGG | + | chr8_3:67958410-67958429 | Msa1304790:CDS | 45.0% | |
ACAACAATGTGCGAGAGGAT+CGG | + | chr8_3:67958508-67958527 | Msa1304790:CDS | 45.0% | |
CTCCGTTTCTGCCATAGAAA+AGG | - | chr8_3:67959039-67959058 | None:intergenic | 45.0% | |
GCAGTTGCCTATGTTCTTTC+AGG | + | chr8_3:67959097-67959116 | Msa1304790:CDS | 45.0% | |
! | TTCAGGGATGTATGGTAGTG+TGG | + | chr8_3:67959114-67959133 | Msa1304790:CDS | 45.0% |
! | TCAGGGATGTATGGTAGTGT+GGG | + | chr8_3:67959115-67959134 | Msa1304790:CDS | 45.0% |
TAGCATTTCCCACTCCAAGT+TGG | - | chr8_3:67959141-67959160 | None:intergenic | 45.0% | |
!! | CTCTTCGTGAGGCATTTTAC+CGG | + | chr8_3:67959540-67959559 | Msa1304790:CDS | 45.0% |
TCACATTGGGAAGATTCTGC+CGG | - | chr8_3:67959562-67959581 | None:intergenic | 45.0% | |
GGAAGATCAAGACAGTAGCA+AGG | - | chr8_3:67959592-67959611 | None:intergenic | 45.0% | |
ATACTTCCAAGGTTTCCGTG+TGG | + | chr8_3:67959622-67959641 | Msa1304790:CDS | 45.0% | |
ACCTTACAGGCAAAACCACA+CGG | - | chr8_3:67959640-67959659 | None:intergenic | 45.0% | |
CGAGCATTCTTTGACCTTAC+AGG | - | chr8_3:67959653-67959672 | None:intergenic | 45.0% | |
GTAAGGTCAAAGAATGCTCG+TGG | + | chr8_3:67959653-67959672 | Msa1304790:CDS | 45.0% | |
TCTGATATCTCTCCACTCAC+CGG | + | chr8_3:67957745-67957764 | Msa1304790:five_prime_UTR | 45.0% | |
!! | ATAAGATGGGTGGTGGGTTT+AGG | + | chr8_3:67958190-67958209 | Msa1304790:exon | 45.0% |
!! | TAAGATGGGTGGTGGGTTTA+GGG | + | chr8_3:67958191-67958210 | Msa1304790:exon | 45.0% |
GTCGAGTGTATCCCATATAG+AGG | - | chr8_3:67958348-67958367 | None:intergenic | 45.0% | |
TATGGGATACACTCGACAAC+AGG | + | chr8_3:67958351-67958370 | Msa1304790:CDS | 45.0% | |
GTTATCCTTGCTTCAAACCG+TGG | + | chr8_3:67958399-67958418 | Msa1304790:CDS | 45.0% | |
TTCAAACCGTGGAACTGTCA+TGG | + | chr8_3:67958410-67958429 | Msa1304790:CDS | 45.0% | |
ACAACAATGTGCGAGAGGAT+CGG | + | chr8_3:67958508-67958527 | Msa1304790:CDS | 45.0% | |
CTCCGTTTCTGCCATAGAAA+AGG | - | chr8_3:67959039-67959058 | None:intergenic | 45.0% | |
GCAGTTGCCTATGTTCTTTC+AGG | + | chr8_3:67959097-67959116 | Msa1304790:CDS | 45.0% | |
! | TTCAGGGATGTATGGTAGTG+TGG | + | chr8_3:67959114-67959133 | Msa1304790:CDS | 45.0% |
! | TCAGGGATGTATGGTAGTGT+GGG | + | chr8_3:67959115-67959134 | Msa1304790:CDS | 45.0% |
TAGCATTTCCCACTCCAAGT+TGG | - | chr8_3:67959141-67959160 | None:intergenic | 45.0% | |
!! | CTCTTCGTGAGGCATTTTAC+CGG | + | chr8_3:67959540-67959559 | Msa1304790:CDS | 45.0% |
TCACATTGGGAAGATTCTGC+CGG | - | chr8_3:67959562-67959581 | None:intergenic | 45.0% | |
GGAAGATCAAGACAGTAGCA+AGG | - | chr8_3:67959592-67959611 | None:intergenic | 45.0% | |
ATACTTCCAAGGTTTCCGTG+TGG | + | chr8_3:67959622-67959641 | Msa1304790:CDS | 45.0% | |
ACCTTACAGGCAAAACCACA+CGG | - | chr8_3:67959640-67959659 | None:intergenic | 45.0% | |
CGAGCATTCTTTGACCTTAC+AGG | - | chr8_3:67959653-67959672 | None:intergenic | 45.0% | |
GTAAGGTCAAAGAATGCTCG+TGG | + | chr8_3:67959653-67959672 | Msa1304790:CDS | 45.0% | |
CTGATATCTCTCCACTCACC+GGG | + | chr8_3:67957746-67957765 | Msa1304790:five_prime_UTR | 50.0% | |
TCGGGAAGGAACGAGAGAAA+CGG | - | chr8_3:67958234-67958253 | None:intergenic | 50.0% | |
CTGTCAGCAGTCTGAACTTC+GGG | - | chr8_3:67958252-67958271 | None:intergenic | 50.0% | |
CCTGTCAGCAGTCTGAACTT+CGG | - | chr8_3:67958253-67958272 | None:intergenic | 50.0% | |
CAGGTGCAGATCCGTTCTAT+TGG | + | chr8_3:67958370-67958389 | Msa1304790:CDS | 50.0% | |
! | CAGTTCCACGGTTTGAAGCA+AGG | - | chr8_3:67958407-67958426 | None:intergenic | 50.0% |
CAAGCTCCATGACAGTTCCA+CGG | - | chr8_3:67958419-67958438 | None:intergenic | 50.0% | |
! | TCCTATTGTCACTTCTGGGC+TGG | + | chr8_3:67958446-67958465 | Msa1304790:CDS | 50.0% |
ACCAGCCCAGAAGTGACAAT+AGG | - | chr8_3:67958450-67958469 | None:intergenic | 50.0% | |
AGTGGACAACAATGTGCGAG+AGG | + | chr8_3:67958503-67958522 | Msa1304790:CDS | 50.0% | |
CAACAATGTGCGAGAGGATC+GGG | + | chr8_3:67958509-67958528 | Msa1304790:CDS | 50.0% | |
TCTCACACTTCTGCTAGCAG+TGG | + | chr8_3:67958865-67958884 | Msa1304790:intron | 50.0% | |
AACGGAGCACAGAAGCTACT+TGG | + | chr8_3:67959052-67959071 | Msa1304790:CDS | 50.0% | |
! | TATGGTAGTGTGGGCCAACT+TGG | + | chr8_3:67959124-67959143 | Msa1304790:CDS | 50.0% |
AGTCCCACCACCATTAACAG+TGG | + | chr8_3:67959443-67959462 | Msa1304790:CDS | 50.0% | |
CGTCCACTGTTAATGGTGGT+GGG | - | chr8_3:67959449-67959468 | None:intergenic | 50.0% | |
ACGTCCACTGTTAATGGTGG+TGG | - | chr8_3:67959450-67959469 | None:intergenic | 50.0% | |
ACCACCATTAACAGTGGACG+TGG | + | chr8_3:67959449-67959468 | Msa1304790:CDS | 50.0% | |
TCCACGTCCACTGTTAATGG+TGG | - | chr8_3:67959453-67959472 | None:intergenic | 50.0% | |
AGCTCCACGTCCACTGTTAA+TGG | - | chr8_3:67959456-67959475 | None:intergenic | 50.0% | |
GCAAAACCACACGGAAACCT+TGG | - | chr8_3:67959631-67959650 | None:intergenic | 50.0% | |
!! | TCCGTGTGGTTTTGCCTGTA+AGG | + | chr8_3:67959636-67959655 | Msa1304790:CDS | 50.0% |
AAAGAATGCTCGTGGACAGC+AGG | + | chr8_3:67959661-67959680 | Msa1304790:CDS | 50.0% | |
AAGAATGCTCGTGGACAGCA+GGG | + | chr8_3:67959662-67959681 | Msa1304790:CDS | 50.0% | |
CTGATATCTCTCCACTCACC+GGG | + | chr8_3:67957746-67957765 | Msa1304790:five_prime_UTR | 50.0% | |
TCGGGAAGGAACGAGAGAAA+CGG | - | chr8_3:67958234-67958253 | None:intergenic | 50.0% | |
CTGTCAGCAGTCTGAACTTC+GGG | - | chr8_3:67958252-67958271 | None:intergenic | 50.0% | |
CCTGTCAGCAGTCTGAACTT+CGG | - | chr8_3:67958253-67958272 | None:intergenic | 50.0% | |
CAGGTGCAGATCCGTTCTAT+TGG | + | chr8_3:67958370-67958389 | Msa1304790:CDS | 50.0% | |
! | CAGTTCCACGGTTTGAAGCA+AGG | - | chr8_3:67958407-67958426 | None:intergenic | 50.0% |
CAAGCTCCATGACAGTTCCA+CGG | - | chr8_3:67958419-67958438 | None:intergenic | 50.0% | |
! | TCCTATTGTCACTTCTGGGC+TGG | + | chr8_3:67958446-67958465 | Msa1304790:CDS | 50.0% |
ACCAGCCCAGAAGTGACAAT+AGG | - | chr8_3:67958450-67958469 | None:intergenic | 50.0% | |
AGTGGACAACAATGTGCGAG+AGG | + | chr8_3:67958503-67958522 | Msa1304790:CDS | 50.0% | |
CAACAATGTGCGAGAGGATC+GGG | + | chr8_3:67958509-67958528 | Msa1304790:CDS | 50.0% | |
TCTCACACTTCTGCTAGCAG+TGG | + | chr8_3:67958865-67958884 | Msa1304790:intron | 50.0% | |
AACGGAGCACAGAAGCTACT+TGG | + | chr8_3:67959052-67959071 | Msa1304790:CDS | 50.0% | |
! | TATGGTAGTGTGGGCCAACT+TGG | + | chr8_3:67959124-67959143 | Msa1304790:CDS | 50.0% |
AGTCCCACCACCATTAACAG+TGG | + | chr8_3:67959443-67959462 | Msa1304790:CDS | 50.0% | |
CGTCCACTGTTAATGGTGGT+GGG | - | chr8_3:67959449-67959468 | None:intergenic | 50.0% | |
ACGTCCACTGTTAATGGTGG+TGG | - | chr8_3:67959450-67959469 | None:intergenic | 50.0% | |
ACCACCATTAACAGTGGACG+TGG | + | chr8_3:67959449-67959468 | Msa1304790:CDS | 50.0% | |
TCCACGTCCACTGTTAATGG+TGG | - | chr8_3:67959453-67959472 | None:intergenic | 50.0% | |
AGCTCCACGTCCACTGTTAA+TGG | - | chr8_3:67959456-67959475 | None:intergenic | 50.0% | |
GCAAAACCACACGGAAACCT+TGG | - | chr8_3:67959631-67959650 | None:intergenic | 50.0% | |
!! | TCCGTGTGGTTTTGCCTGTA+AGG | + | chr8_3:67959636-67959655 | Msa1304790:CDS | 50.0% |
AAAGAATGCTCGTGGACAGC+AGG | + | chr8_3:67959661-67959680 | Msa1304790:CDS | 50.0% | |
AAGAATGCTCGTGGACAGCA+GGG | + | chr8_3:67959662-67959681 | Msa1304790:CDS | 50.0% | |
CAGCAGTCTGAACTTCGGGA+AGG | - | chr8_3:67958248-67958267 | None:intergenic | 55.0% | |
CCGAAGTTCAGACTGCTGAC+AGG | + | chr8_3:67958250-67958269 | Msa1304790:CDS | 55.0% | |
CGTGGAACTGTCATGGAGCT+TGG | + | chr8_3:67958417-67958436 | Msa1304790:CDS | 55.0% | |
!!! | TGGGCTGGTCATGCAGCTTT+TGG | + | chr8_3:67958461-67958480 | Msa1304790:CDS | 55.0% |
! | CTGGTCATGCAGCTTTTGGC+TGG | + | chr8_3:67958465-67958484 | Msa1304790:CDS | 55.0% |
TAGTGTGGGCCAACTTGGAG+TGG | + | chr8_3:67959129-67959148 | Msa1304790:CDS | 55.0% | |
AGTGTGGGCCAACTTGGAGT+GGG | + | chr8_3:67959130-67959149 | Msa1304790:CDS | 55.0% | |
GGACGTGGAGCTGAGTTTGA+AGG | + | chr8_3:67959464-67959483 | Msa1304790:CDS | 55.0% | |
CAAGGTTCGTGCTCTTCGTG+AGG | + | chr8_3:67959529-67959548 | Msa1304790:CDS | 55.0% | |
CAGCAGTCTGAACTTCGGGA+AGG | - | chr8_3:67958248-67958267 | None:intergenic | 55.0% | |
CCGAAGTTCAGACTGCTGAC+AGG | + | chr8_3:67958250-67958269 | Msa1304790:CDS | 55.0% | |
CGTGGAACTGTCATGGAGCT+TGG | + | chr8_3:67958417-67958436 | Msa1304790:CDS | 55.0% | |
!!! | TGGGCTGGTCATGCAGCTTT+TGG | + | chr8_3:67958461-67958480 | Msa1304790:CDS | 55.0% |
! | CTGGTCATGCAGCTTTTGGC+TGG | + | chr8_3:67958465-67958484 | Msa1304790:CDS | 55.0% |
TAGTGTGGGCCAACTTGGAG+TGG | + | chr8_3:67959129-67959148 | Msa1304790:CDS | 55.0% | |
AGTGTGGGCCAACTTGGAGT+GGG | + | chr8_3:67959130-67959149 | Msa1304790:CDS | 55.0% | |
GGACGTGGAGCTGAGTTTGA+AGG | + | chr8_3:67959464-67959483 | Msa1304790:CDS | 55.0% | |
CAAGGTTCGTGCTCTTCGTG+AGG | + | chr8_3:67959529-67959548 | Msa1304790:CDS | 55.0% | |
ACGACGAAGATCCCGGTGAG+TGG | - | chr8_3:67957760-67957779 | None:intergenic | 60.0% | |
CGGGAAGACGACGAAGATCC+CGG | - | chr8_3:67957767-67957786 | None:intergenic | 60.0% | |
ACGACGAAGATCCCGGTGAG+TGG | - | chr8_3:67957760-67957779 | None:intergenic | 60.0% | |
CGGGAAGACGACGAAGATCC+CGG | - | chr8_3:67957767-67957786 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_3 | gene | 67957710 | 67959772 | 67957710 | ID=Msa1304790;Name=Msa1304790 |
chr8_3 | mRNA | 67957710 | 67959772 | 67957710 | ID=Msa1304790-mRNA-1;Parent=Msa1304790;Name=Msa1304790-mRNA-1;_AED=0.01;_eAED=0.01;_QI=120|1|1|1|0.66|0.5|4|0|309 |
chr8_3 | exon | 67957710 | 67957805 | 67957710 | ID=Msa1304790-mRNA-1:exon:20947;Parent=Msa1304790-mRNA-1 |
chr8_3 | exon | 67958171 | 67958538 | 67958171 | ID=Msa1304790-mRNA-1:exon:20948;Parent=Msa1304790-mRNA-1 |
chr8_3 | exon | 67959051 | 67959278 | 67959051 | ID=Msa1304790-mRNA-1:exon:20949;Parent=Msa1304790-mRNA-1 |
chr8_3 | exon | 67959418 | 67959772 | 67959418 | ID=Msa1304790-mRNA-1:exon:20950;Parent=Msa1304790-mRNA-1 |
chr8_3 | five_prime_UTR | 67957710 | 67957805 | 67957710 | ID=Msa1304790-mRNA-1:five_prime_utr;Parent=Msa1304790-mRNA-1 |
chr8_3 | five_prime_UTR | 67958171 | 67958194 | 67958171 | ID=Msa1304790-mRNA-1:five_prime_utr;Parent=Msa1304790-mRNA-1 |
chr8_3 | CDS | 67958195 | 67958538 | 67958195 | ID=Msa1304790-mRNA-1:cds;Parent=Msa1304790-mRNA-1 |
chr8_3 | CDS | 67959051 | 67959278 | 67959051 | ID=Msa1304790-mRNA-1:cds;Parent=Msa1304790-mRNA-1 |
chr8_3 | CDS | 67959418 | 67959772 | 67959418 | ID=Msa1304790-mRNA-1:cds;Parent=Msa1304790-mRNA-1 |
Gene Sequence |
Protein sequence |