AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0969520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0969520 MtrunA17_Chr6g0469931 54.128 218 61 5 1 185 1 212 1.18e-63 219
Msa0969520 MtrunA17_Chr6g0469811 50.365 137 51 1 2 121 11 147 1.93e-41 145
Msa0969520 MtrunA17_Chr2g0279021 29.119 261 150 6 147 377 16 271 1.16e-28 117
Msa0969520 MtrunA17_Chr8g0374181 35.338 133 85 1 246 377 21 153 3.29e-24 102
Msa0969520 MtrunA17_Chr7g0259081 34.356 163 90 1 1 146 1 163 4.68e-23 95.9
Msa0969520 MtrunA17_Chr7g0234721 35.583 163 88 3 1 146 1 163 9.79e-22 95.1
Msa0969520 MtrunA17_Chr3g0093401 29.557 203 118 3 1 180 1 201 1.07e-21 94.0
Msa0969520 MtrunA17_Chr4g0077081 33.333 135 56 2 218 325 28 155 1.33e-20 89.0
Msa0969520 MtrunA17_Chr4g0010241 36.232 138 77 1 39 165 75 212 1.98e-20 90.1
Msa0969520 MtrunA17_Chr4g0019691 32.593 135 86 2 246 377 29 161 8.02e-20 87.4
Msa0969520 MtrunA17_Chr1g0193821 36.620 142 77 3 44 185 1 129 4.12e-18 84.0
Msa0969520 MtrunA17_Chr1g0168201 38.393 112 66 2 281 391 15 124 3.55e-15 73.2
Msa0969520 MtrunA17_Chr1g0206481 25.243 206 123 5 11 186 11 215 6.03e-14 72.4
Msa0969520 MtrunA17_Chr6g0471721 36.538 104 64 1 276 377 2 105 3.18e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0969520 AT1G52950.1 20.577 520 300 18 10 451 12 496 3.94e-17 84.7

Find 143 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCGCTGATTATGATTATT+TGG 0.171120 6_4:-994478 Msa0969520:CDS
ATTTGAAATATCAGCTTATA+TGG 0.194564 6_4:+994585 None:intergenic
GGGAAGGATGATGTTGTTTA+AGG 0.226381 6_4:-993148 Msa0969520:CDS
TCATGTTTGATGGATCTTAT+AGG 0.299693 6_4:-993101 Msa0969520:CDS
AACTCAATCCAGATCAAGTT+TGG 0.306008 6_4:+991800 None:intergenic
CTTCGCTTGGTCCTCGCATT+AGG 0.310386 6_4:-993741 Msa0969520:CDS
CAGTAATATGCACCAGAATC+AGG 0.344639 6_4:+993553 None:intergenic
TTTCAGAAGAAGTTGGTAGA+AGG 0.346459 6_4:-994675 Msa0969520:intron
CGGTGTGGGCGCAAACTTCT+TGG 0.348141 6_4:+994496 None:intergenic
CAAACTTCTTGGATCTTAAT+CGG 0.352336 6_4:+994507 None:intergenic
GGAAGCTGGGGAAGGATTGC+CGG 0.355817 6_4:-994129 Msa0969520:CDS
GTTGTGGAAGGTTTGGTTGA+GGG 0.360112 6_4:-993622 Msa0969520:intron
CAGAATTCCTCAACAATAGA+TGG 0.369411 6_4:+993057 None:intergenic
CATGTTTGATGGATCTTATA+GGG 0.370520 6_4:-993100 Msa0969520:CDS
AATATAACCTTGGAACCATA+TGG 0.377849 6_4:+993506 None:intergenic
GGATGCTGAGTTGAGTGAAT+TGG 0.378551 6_4:-992280 Msa0969520:CDS
AGGAGTGTTACTCCTGATTC+TGG 0.380403 6_4:-993565 Msa0969520:CDS
AATTATGTGTTGTAGGTATA+AGG 0.382305 6_4:-993427 Msa0969520:intron
CAAGGCTCCCAAACTTGATC+TGG 0.387928 6_4:-991808 Msa0969520:CDS
AGCCTGATCAGGTTTCAAAA+AGG 0.390572 6_4:+994911 None:intergenic
GGTCGTGTGTCTGATACATC+TGG 0.392611 6_4:-992186 Msa0969520:CDS
GATGTTGTTGGTTTGATGAC+TGG 0.398535 6_4:-994373 Msa0969520:CDS
CAGATCAAGTTTGGGAGCCT+TGG 0.400511 6_4:+991809 None:intergenic
AAGGTTGAGTGTGCGTTGTT+TGG 0.400585 6_4:-994185 Msa0969520:CDS
CTGCCGAGAGAGAGTACGTT+AGG 0.402987 6_4:-994345 Msa0969520:CDS
GCAGTGTTTGTGATGTTTGA+TGG 0.403092 6_4:-993372 Msa0969520:CDS
TGTTTGTGTGATATTGTTCC+TGG 0.404785 6_4:-994987 Msa0969520:CDS
AAATACTGCTCCAGTTCTTA+AGG 0.409409 6_4:-992157 Msa0969520:intron
CAAAATGTTACCTTAAGAAC+TGG 0.411162 6_4:+992147 None:intergenic
GCAAATTGAACCACAACAAC+CGG 0.411747 6_4:+994110 None:intergenic
TTGTGGAAGGTTTGGTTGAG+GGG 0.411929 6_4:-993621 Msa0969520:intron
ATTACAAAATGCAAATAAAC+AGG 0.419512 6_4:+994044 None:intergenic
TCCTGAGATTGTTAGTTTGA+AGG 0.424223 6_4:-993169 Msa0969520:CDS
TCAACAGAGTTAGCCTGATC+AGG 0.429762 6_4:+994900 None:intergenic
CGCAAGGCATTTGACGCAGT+TGG 0.430086 6_4:-991861 Msa0969520:CDS
TAATTCTGTGTAGATGTTGT+TGG 0.433961 6_4:-994385 Msa0969520:intron
CTCTGTTAGGCTGAAAATGC+TGG 0.435251 6_4:-993201 Msa0969520:intron
TCTAGTGTTGTTCCTTCGCT+TGG 0.436276 6_4:-993754 Msa0969520:CDS
TTTGCAGTTGCCCCTGGTGT+TGG 0.441612 6_4:-994630 Msa0969520:CDS
CCCTTCAAACTAACAATCTC+AGG 0.442351 6_4:+993168 None:intergenic
CTACTGCTGCTGAGAAGAAT+GGG 0.445703 6_4:-991911 Msa0969520:CDS
CAGACCCTAGCTGTGGATCC+TGG 0.446283 6_4:-991996 Msa0969520:CDS
CAGAAGAAGTTGGTAGAAGG+AGG 0.447420 6_4:-994672 Msa0969520:CDS
TGTGTCTCCTCAACAACCTC+TGG 0.450330 6_4:+992249 None:intergenic
GATGCTGAGTTGAGTGAATT+GGG 0.450630 6_4:-992279 Msa0969520:CDS
GTCGAGAAGACTGCATCTGC+AGG 0.453268 6_4:-993126 Msa0969520:CDS
AGCGAAGGAACAACACTAGA+AGG 0.454161 6_4:+993757 None:intergenic
GCTACTGCTGCTGAGAAGAA+TGG 0.456853 6_4:-991912 Msa0969520:CDS
ATGCAAATAAACAGGCAAAC+AGG 0.459237 6_4:+994052 None:intergenic
GCAGTAGCTCCTGACAGGTC+TGG 0.460741 6_4:+991927 None:intergenic
TCTGCAGGGGTCATGTTTGA+TGG 0.461394 6_4:-993111 Msa0969520:CDS
ATGTTGTTGGTTTGATGACT+GGG 0.464793 6_4:-994372 Msa0969520:CDS
AATATCACACAAACAATCAA+TGG 0.466623 6_4:+994995 None:intergenic
TGGATGTGAGGCTGTAAGTT+TGG 0.469171 6_4:-991976 Msa0969520:CDS
ATCCTGCGCGTCGTTGTCAT+AGG 0.469694 6_4:-993585 Msa0969520:CDS
CCTGAGATTGTTAGTTTGAA+GGG 0.471203 6_4:-993168 Msa0969520:CDS
GGATGGAAAGGTTACTAAGA+TGG 0.473621 6_4:-994323 Msa0969520:intron
AGAGTACGTTAGGGATGGAA+AGG 0.475235 6_4:-994335 Msa0969520:CDS
TCATACTTTGCAGTTGCCCC+TGG 0.477173 6_4:-994636 Msa0969520:CDS
TGTGGAAGGTTTGGTTGAGG+GGG 0.488124 6_4:-993620 Msa0969520:intron
TGTTGTGGAAGGTTTGGTTG+AGG 0.488730 6_4:-993623 Msa0969520:intron
TGGATCTTATAGGGTGAAGA+GGG 0.492867 6_4:-993091 Msa0969520:CDS
GGATCAAGGTGCGTGTGCTT+AGG 0.496137 6_4:-994950 Msa0969520:CDS
AATGTGCAGTTTGTGTCTGA+TGG 0.498589 6_4:-992306 Msa0969520:intron
GCTGATTATGATTATTTGGT+TGG 0.504058 6_4:-994474 Msa0969520:intron
ACTCAATCCAGATCAAGTTT+GGG 0.509725 6_4:+991801 None:intergenic
TATCAGCTTATATGGATGAA+TGG 0.512952 6_4:+994593 None:intergenic
TGTTGAGGAGACACAAATTG+AGG 0.516639 6_4:-992241 Msa0969520:CDS
ATCCCTAACGTACTCTCTCT+CGG 0.520307 6_4:+994342 None:intergenic
CATTAGGCCTTCGATTGAAG+AGG 0.522179 6_4:-993725 Msa0969520:CDS
AATATCAGTGTTGCAATCCA+TGG 0.525062 6_4:-993787 Msa0969520:intron
CAGCAGCAGTAGCTCCTGAC+AGG 0.525221 6_4:+991922 None:intergenic
TGATTCTCTCCAGAAGATGA+TGG 0.528400 6_4:-994153 Msa0969520:CDS
CACTAGAAGGTTCAATGCCA+TGG 0.529130 6_4:+993770 None:intergenic
ATCCTCCATGACTCTCTACC+AGG 0.529476 6_4:+994969 None:intergenic
AGATTGTTAGTTTGAAGGGA+AGG 0.530656 6_4:-993164 Msa0969520:CDS
AATGTTGTTGTTACTCCAGT+GGG 0.530779 6_4:-992207 Msa0969520:CDS
GTACGGTATGAGCCAACACC+AGG 0.531748 6_4:+994618 None:intergenic
TTTAAAAGTCCAGACCTGTC+AGG 0.532245 6_4:-991936 Msa0969520:CDS
ATCGGAGAAAGTCCATGCAC+AGG 0.532897 6_4:+994525 None:intergenic
GGAAGGATTGCCGGTTGTTG+TGG 0.534201 6_4:-994120 Msa0969520:CDS
GATTCTCTCCAGAAGATGAT+GGG 0.535338 6_4:-994152 Msa0969520:CDS
TGTGAAGCATGTGTTCCATA+TGG 0.535840 6_4:-993521 Msa0969520:CDS
GACACAAATTGAGGATTTCG+TGG 0.538543 6_4:-992232 Msa0969520:CDS
AAACTTACAGCCTCACATCC+AGG 0.544375 6_4:+991978 None:intergenic
GCTGTAAGTTTGGCGGATGA+TGG 0.546225 6_4:-991966 Msa0969520:CDS
CACATCCAGGATCCACAGCT+AGG 0.550757 6_4:+991991 None:intergenic
GTATCAGACACACGACCCAC+TGG 0.552972 6_4:+992192 None:intergenic
TAGAGAGTCATGGAGGATCA+AGG 0.553834 6_4:-994964 Msa0969520:CDS
TTCTGGTGCATATTACTGCA+AGG 0.555168 6_4:-993548 Msa0969520:CDS
TCAGGCTAACTCTGTTGAGA+TGG 0.555939 6_4:-994895 Msa0969520:CDS
CTCCTATGACAACGACGCGC+AGG 0.556082 6_4:+993583 None:intergenic
GCGAAAATTAAAATATTCCG+AGG 0.559220 6_4:-994089 Msa0969520:CDS
GGAATTCTGCACTTCTGTCA+AGG 0.559554 6_4:-993043 Msa0969520:intron
ATGGATCTTATAGGGTGAAG+AGG 0.564607 6_4:-993092 Msa0969520:CDS
ATGTGTTCCATATGGTTCCA+AGG 0.573536 6_4:-993513 Msa0969520:intron
AAGAAATCCTCTTCAATCGA+AGG 0.574744 6_4:+993718 None:intergenic
GCAGTTTGTGTCTGATGGTG+TGG 0.575103 6_4:-992301 Msa0969520:intron
TAATGTTGTTGTTACTCCAG+TGG 0.578117 6_4:-992208 Msa0969520:CDS
TATATGGATGAATGGTAGTA+CGG 0.578247 6_4:+994601 None:intergenic
TGCCGAGAGAGAGTACGTTA+GGG 0.578680 6_4:-994344 Msa0969520:CDS
AATGAAGACAAAGGTGGAGA+GGG 0.584507 6_4:-994565 Msa0969520:CDS
AGCTGTGGATCCTGGATGTG+AGG 0.585040 6_4:-991988 Msa0969520:CDS
GGTGACATGCAACTGTTGCT+TGG 0.586225 6_4:-993351 Msa0969520:CDS
TTGTTCCTGGTAGAGAGTCA+TGG 0.586636 6_4:-994974 Msa0969520:CDS
TGAGGATCCAGAGGTTGTTG+AGG 0.588057 6_4:-992256 Msa0969520:CDS
ATAATCATAATCAGCGGTGT+GGG 0.589439 6_4:+994482 None:intergenic
GAGAGAGAGTACGTTAGGGA+TGG 0.590043 6_4:-994340 Msa0969520:CDS
GGTGCGTGTGCTTAGGATGT+GGG 0.592953 6_4:-994943 Msa0969520:CDS
TGTTGATCCATCTATTGTTG+AGG 0.594848 6_4:-993064 Msa0969520:CDS
TCGAGAAGACTGCATCTGCA+GGG 0.595551 6_4:-993125 Msa0969520:CDS
AGGTGCGTGTGCTTAGGATG+TGG 0.597101 6_4:-994944 Msa0969520:CDS
ATGTGAGGCTGTAAGTTTGG+CGG 0.600972 6_4:-991973 Msa0969520:CDS
ACATCCAGGATCCACAGCTA+GGG 0.605603 6_4:+991992 None:intergenic
TATCTGTTTATATGCAGAGA+GGG 0.606584 6_4:-994007 Msa0969520:CDS
AGGACAGAAAATTTATACCT+CGG 0.608770 6_4:+994072 None:intergenic
AAATGAAGACAAAGGTGGAG+AGG 0.612097 6_4:-994566 Msa0969520:CDS
AGTTCACTTATCCCTGTGCA+TGG 0.617904 6_4:-994537 Msa0969520:CDS
TCTGGTGCATATTACTGCAA+GGG 0.618450 6_4:-993547 Msa0969520:CDS
AATAATCATAATCAGCGGTG+TGG 0.624084 6_4:+994481 None:intergenic
AGCTAAGAGAAATTTGCGCA+AGG 0.625659 6_4:-991877 Msa0969520:CDS
CGAGAAGACTGCATCTGCAG+GGG 0.629581 6_4:-993124 Msa0969520:CDS
CTGGTGCATATTACTGCAAG+GGG 0.631078 6_4:-993546 Msa0969520:CDS
TCGGAGAAAGTCCATGCACA+GGG 0.632550 6_4:+994526 None:intergenic
ATTTCAAATGAAGACAAAGG+TGG 0.632682 6_4:-994571 Msa0969520:CDS
GATATTTCAAATGAAGACAA+AGG 0.634663 6_4:-994574 Msa0969520:CDS
ATTCTCTCCAGAAGATGATG+GGG 0.636639 6_4:-994151 Msa0969520:CDS
GTCGTGTGTCTGATACATCT+GGG 0.644547 6_4:-992185 Msa0969520:CDS
CTAATGCGAGGACCAAGCGA+AGG 0.655277 6_4:+993742 None:intergenic
AACCAAATAATCATAATCAG+CGG 0.658464 6_4:+994476 None:intergenic
TTCAAACTAACAATCTCAGG+AGG 0.664295 6_4:+993171 None:intergenic
TTTGCAGCAGACCCTAGCTG+TGG 0.668538 6_4:-992003 Msa0969520:intron
TGAGTTGAGTGAATTGGGTG+AGG 0.670731 6_4:-992274 Msa0969520:CDS
TCAATCGAAGGCCTAATGCG+AGG 0.683338 6_4:+993730 None:intergenic
TGAATTGGGTGAGGATCCAG+AGG 0.695337 6_4:-992265 Msa0969520:CDS
TTATCTGTTTATATGCAGAG+AGG 0.696528 6_4:-994008 Msa0969520:CDS
CACTACCACCAAGAAAACCA+AGG 0.705071 6_4:-991826 Msa0969520:CDS
TACTGCTGCTGAGAAGAATG+GGG 0.711790 6_4:-991910 Msa0969520:CDS
TACGGTATGAGCCAACACCA+GGG 0.713804 6_4:+994619 None:intergenic
TTCTCTCCAGAAGATGATGG+GGG 0.715015 6_4:-994150 Msa0969520:CDS
GCGTGTGCTTAGGATGTGGG+AGG 0.715566 6_4:-994940 Msa0969520:CDS
ACGGTATGAGCCAACACCAG+GGG 0.725542 6_4:+994620 None:intergenic
TTCCTGGTAGAGAGTCATGG+AGG 0.748573 6_4:-994971 Msa0969520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAAATTTTAAAATTAAAAC+AGG + chr6_4:992397-992416 None:intergenic 10.0%
!!! TATTATTCAAATATTTTGTA+TGG - chr6_4:993341-993360 Msa0969520:CDS 10.0%
!!! TATTTGCATTTTGTAATTTA+TGG - chr6_4:992770-992789 Msa0969520:intron 15.0%
!!! ATTTGCATTTTGTAATTTAT+GGG - chr6_4:992771-992790 Msa0969520:intron 15.0%
!! GTGTATATTTATTCTATTAA+CGG - chr6_4:993959-993978 Msa0969520:intron 15.0%
!!! ATCAATATATTTTTCAGAAA+AGG + chr6_4:994406-994425 None:intergenic 15.0%
!!! GGTTTATATAAATTTAGAAT+AGG - chr6_4:994702-994721 Msa0969520:intron 15.0%
!!! TTATATAAATTTAGAATAGG+AGG - chr6_4:994705-994724 Msa0969520:intron 15.0%
!!! GATTATTTATTTTGTCTATC+AGG - chr6_4:991960-991979 Msa0969520:CDS 20.0%
!! TATAAATTTCTCAATAGTAC+AGG + chr6_4:992007-992026 None:intergenic 20.0%
!!! ATTTGAAATATCAGCTTATA+TGG + chr6_4:992226-992245 None:intergenic 20.0%
!! ATTACAAAATGCAAATAAAC+AGG + chr6_4:992767-992786 None:intergenic 20.0%
!!! AACTCATAGATATTTTTCTT+GGG + chr6_4:993126-993145 None:intergenic 20.0%
!!! GGTTTAATTTAATATAACCT+TGG + chr6_4:993315-993334 None:intergenic 20.0%
!! AATATTTGAATAATAGCGAT+GGG + chr6_4:993336-993355 None:intergenic 20.0%
!! AAATATTTGAATAATAGCGA+TGG + chr6_4:993337-993356 None:intergenic 20.0%
!! TTATTGTAATTATGTGTTGT+AGG - chr6_4:993374-993393 Msa0969520:CDS 20.0%
!! ATTAACGGAAAATTTATGTT+AGG - chr6_4:993974-993993 Msa0969520:intron 20.0%
!!! AGCATTGAGAAAAAAAATAT+TGG - chr6_4:994346-994365 Msa0969520:CDS 20.0%
!! TGAGAAAAAAAATATTGGTA+AGG - chr6_4:994351-994370 Msa0969520:CDS 20.0%
!!! ACATTTTGCTTTTATAACTT+TGG - chr6_4:994676-994695 Msa0969520:intron 20.0%
!! AAGAATTTATGCAACAATTA+AGG + chr6_4:994782-994801 None:intergenic 20.0%
! AATATCACACAAACAATCAA+TGG + chr6_4:991816-991835 None:intergenic 25.0%
! GATATTTCAAATGAAGACAA+AGG - chr6_4:992234-992253 Msa0969520:CDS 25.0%
! AACCAAATAATCATAATCAG+CGG + chr6_4:992335-992354 None:intergenic 25.0%
!! AAACTATATTAACCCTGTTT+TGG - chr6_4:992584-992603 Msa0969520:intron 25.0%
!! ACTCATAGATATTTTTCTTG+GGG + chr6_4:993125-993144 None:intergenic 25.0%
!! CAACTCATAGATATTTTTCT+TGG + chr6_4:993127-993146 None:intergenic 25.0%
! AATTATGTGTTGTAGGTATA+AGG - chr6_4:993381-993400 Msa0969520:CDS 25.0%
! TTGCAAATAAAGACAAAAAC+CGG + chr6_4:993563-993582 None:intergenic 25.0%
! TAGAATAAATATACACACCT+TGG + chr6_4:993955-993974 None:intergenic 25.0%
! TTAGTTCACTTGCAATAAAT+TGG - chr6_4:994008-994027 Msa0969520:CDS 25.0%
!! ATAAATTGGACAGTTTCTTT+TGG - chr6_4:994022-994041 Msa0969520:CDS 25.0%
! CAAAAGAGTGAAACATTTAA+TGG - chr6_4:994108-994127 Msa0969520:CDS 25.0%
! TGTTGCATTAACTAATTATG+TGG - chr6_4:994297-994316 Msa0969520:intron 25.0%
! AGAAAAGGCTTCATAATTAA+TGG + chr6_4:994391-994410 None:intergenic 25.0%
!! GATACTTTGGTAACTTAAAA+TGG + chr6_4:994455-994474 None:intergenic 25.0%
!!! TTTGCTTTTATAACTTTGGT+TGG - chr6_4:994680-994699 Msa0969520:intron 25.0%
!!! TTGCTTTTATAACTTTGGTT+GGG - chr6_4:994681-994700 Msa0969520:intron 25.0%
! AGGTAGACATATTATATTAG+TGG - chr6_4:994725-994744 Msa0969520:intron 25.0%
ATACAACAATTGCCTTCTAA+TGG + chr6_4:992110-992129 None:intergenic 30.0%
!! GTATGTTTTTCAGAAGAAGT+TGG - chr6_4:992126-992145 Msa0969520:intron 30.0%
TATATGGATGAATGGTAGTA+CGG + chr6_4:992210-992229 None:intergenic 30.0%
TATCAGCTTATATGGATGAA+TGG + chr6_4:992218-992237 None:intergenic 30.0%
ATTTCAAATGAAGACAAAGG+TGG - chr6_4:992237-992256 Msa0969520:CDS 30.0%
CAAACTTCTTGGATCTTAAT+CGG + chr6_4:992304-992323 None:intergenic 30.0%
GCTGATTATGATTATTTGGT+TGG - chr6_4:992334-992353 Msa0969520:intron 30.0%
TAATTCTGTGTAGATGTTGT+TGG - chr6_4:992423-992442 Msa0969520:intron 30.0%
ATGAGAAAAACACCAAAACA+GGG + chr6_4:992599-992618 None:intergenic 30.0%
AATGAGAAAAACACCAAAAC+AGG + chr6_4:992600-992619 None:intergenic 30.0%
!!! TGTTTTGGTGTTTTTCTCAT+TGG - chr6_4:992599-992618 Msa0969520:intron 30.0%
GCGAAAATTAAAATATTCCG+AGG - chr6_4:992719-992738 Msa0969520:intron 30.0%
AGGACAGAAAATTTATACCT+CGG + chr6_4:992739-992758 None:intergenic 30.0%
TTATCTGTTTATATGCAGAG+AGG - chr6_4:992800-992819 Msa0969520:intron 30.0%
TATCTGTTTATATGCAGAGA+GGG - chr6_4:992801-992820 Msa0969520:intron 30.0%
TTATGAACACGACTAGAATT+TGG - chr6_4:992839-992858 Msa0969520:intron 30.0%
TATGAACACGACTAGAATTT+GGG - chr6_4:992840-992859 Msa0969520:intron 30.0%
!!! TTTTTTCTGTTGTGTGACTT+TGG - chr6_4:992930-992949 Msa0969520:intron 30.0%
AATATAACCTTGGAACCATA+TGG + chr6_4:993305-993324 None:intergenic 30.0%
GAATCATCTATAACCAACTT+TGG + chr6_4:993512-993531 None:intergenic 30.0%
!! TTTGATGATGTATCTCTGTT+AGG - chr6_4:993594-993613 Msa0969520:CDS 30.0%
! TCATGTTTGATGGATCTTAT+AGG - chr6_4:993707-993726 Msa0969520:intron 30.0%
! CATGTTTGATGGATCTTATA+GGG - chr6_4:993708-993727 Msa0969520:intron 30.0%
AACTACAAATGGAAAGCAAT+CGG + chr6_4:993861-993880 None:intergenic 30.0%
CATCAGAGAAAAACTACAAA+TGG + chr6_4:993872-993891 None:intergenic 30.0%
! TAGTTTTTCTCTGATGTTGT+GGG - chr6_4:993876-993895 Msa0969520:intron 30.0%
ACGGAAAATTTATGTTAGGT+AGG - chr6_4:993978-993997 Msa0969520:intron 30.0%
TGGTTAGTATATATGTGCTT+TGG + chr6_4:994253-994272 None:intergenic 30.0%
!!! TAACCACTGTTTTTATTTGC+TGG - chr6_4:994267-994286 Msa0969520:intron 30.0%
CAAAATGTTACCTTAAGAAC+TGG + chr6_4:994664-994683 None:intergenic 30.0%
TGTTTGTGTGATATTGTTCC+TGG - chr6_4:991821-991840 Msa0969520:CDS 35.0%
GATCAGGTTTCAAAAAGGTT+GGG + chr6_4:991895-991914 None:intergenic 35.0%
TGATCAGGTTTCAAAAAGGT+TGG + chr6_4:991896-991915 None:intergenic 35.0%
!!! AACCTTTTTGAAACCTGATC+AGG - chr6_4:991895-991914 Msa0969520:CDS 35.0%
!!! GATGGTTTTGATTGATGAGA+AGG - chr6_4:991931-991950 Msa0969520:CDS 35.0%
!! TTTCAGAAGAAGTTGGTAGA+AGG - chr6_4:992133-992152 Msa0969520:intron 35.0%
ATAATCATAATCAGCGGTGT+GGG + chr6_4:992329-992348 None:intergenic 35.0%
AATAATCATAATCAGCGGTG+TGG + chr6_4:992330-992349 None:intergenic 35.0%
! CACCGCTGATTATGATTATT+TGG - chr6_4:992330-992349 Msa0969520:intron 35.0%
TTTGATGTGGTTACTATGCA+GGG - chr6_4:992371-992390 Msa0969520:intron 35.0%
!! ATGTTGTTGGTTTGATGACT+GGG - chr6_4:992436-992455 Msa0969520:intron 35.0%
! TGGTGTTTTTCTCATTGGTA+AGG - chr6_4:992604-992623 Msa0969520:intron 35.0%
ATGCAAATAAACAGGCAAAC+AGG + chr6_4:992759-992778 None:intergenic 35.0%
AATTTCACAGCCTCTTCAAA+AGG + chr6_4:992874-992893 None:intergenic 35.0%
AGGCTGTGAAATTTAGAGAA+GGG - chr6_4:992881-992900 Msa0969520:intron 35.0%
AATATCAGTGTTGCAATCCA+TGG - chr6_4:993021-993040 Msa0969520:intron 35.0%
AAGAAATCCTCTTCAATCGA+AGG + chr6_4:993093-993112 None:intergenic 35.0%
TTGGTTATAGATGATTCTCC+TGG - chr6_4:993515-993534 Msa0969520:CDS 35.0%
TATTGTTGTGGTTTCTTCAC+CGG - chr6_4:993541-993560 Msa0969520:CDS 35.0%
TTCAAACTAACAATCTCAGG+AGG + chr6_4:993640-993659 None:intergenic 35.0%
! TCCTGAGATTGTTAGTTTGA+AGG - chr6_4:993639-993658 Msa0969520:intron 35.0%
! CCTGAGATTGTTAGTTTGAA+GGG - chr6_4:993640-993659 Msa0969520:intron 35.0%
! AGATTGTTAGTTTGAAGGGA+AGG - chr6_4:993644-993663 Msa0969520:intron 35.0%
TGTTGATCCATCTATTGTTG+AGG - chr6_4:993744-993763 Msa0969520:CDS 35.0%
CAGAATTCCTCAACAATAGA+TGG + chr6_4:993754-993773 None:intergenic 35.0%
! GTAGTTTTTCTCTGATGTTG+TGG - chr6_4:993875-993894 Msa0969520:intron 35.0%
ATAAATATACACACCTTGGC+CGG + chr6_4:993951-993970 None:intergenic 35.0%
TAGGTATTAGAATCATGCTG+AGG - chr6_4:994056-994075 Msa0969520:CDS 35.0%
AGGTATTAGAATCATGCTGA+GGG - chr6_4:994057-994076 Msa0969520:CDS 35.0%
TTAAACGACATGATTCACGA+TGG + chr6_4:994180-994199 None:intergenic 35.0%
AAAACCCATGAATTGTTTGC+AGG - chr6_4:994198-994217 Msa0969520:intron 35.0%
TTGCCAGCAAATAAAAACAG+TGG + chr6_4:994273-994292 None:intergenic 35.0%
!!! CTGTTTTTATTTGCTGGCAA+TGG - chr6_4:994273-994292 Msa0969520:intron 35.0%
! CTCACTTTGTTTGGATACTT+TGG + chr6_4:994468-994487 None:intergenic 35.0%
! TAATGTTGTTGTTACTCCAG+TGG - chr6_4:994600-994619 Msa0969520:CDS 35.0%
! AATGTTGTTGTTACTCCAGT+GGG - chr6_4:994601-994620 Msa0969520:CDS 35.0%
AAATACTGCTCCAGTTCTTA+AGG - chr6_4:994651-994670 Msa0969520:CDS 35.0%
AACAATTAAGGTCTACAGAG+AGG + chr6_4:994770-994789 None:intergenic 35.0%
AGCCTGATCAGGTTTCAAAA+AGG + chr6_4:991900-991919 None:intergenic 40.0%
AGATTCATGCCACCATTAGA+AGG - chr6_4:992095-992114 Msa0969520:intron 40.0%
CAACAATTGCCTTCTAATGG+TGG + chr6_4:992107-992126 None:intergenic 40.0%
AAATGAAGACAAAGGTGGAG+AGG - chr6_4:992242-992261 Msa0969520:CDS 40.0%
AATGAAGACAAAGGTGGAGA+GGG - chr6_4:992243-992262 Msa0969520:CDS 40.0%
GTTTGATGTGGTTACTATGC+AGG - chr6_4:992370-992389 Msa0969520:intron 40.0%
!! GATGTTGTTGGTTTGATGAC+TGG - chr6_4:992435-992454 Msa0969520:intron 40.0%
GGATGGAAAGGTTACTAAGA+TGG - chr6_4:992485-992504 Msa0969520:intron 40.0%
TGATTCTCTCCAGAAGATGA+TGG - chr6_4:992655-992674 Msa0969520:intron 40.0%
GATTCTCTCCAGAAGATGAT+GGG - chr6_4:992656-992675 Msa0969520:intron 40.0%
ATTCTCTCCAGAAGATGATG+GGG - chr6_4:992657-992676 Msa0969520:intron 40.0%
GCAAATTGAACCACAACAAC+CGG + chr6_4:992701-992720 None:intergenic 40.0%
GAGGCTGTGAAATTTAGAGA+AGG - chr6_4:992880-992899 Msa0969520:intron 40.0%
! CTATGAGTTGAATGCCATTG+TGG - chr6_4:993137-993156 Msa0969520:CDS 40.0%
ATAAATCCCATCCTCCACAA+TGG + chr6_4:993154-993173 None:intergenic 40.0%
! TTATGTTGTCTGTGCTGTTG+TGG - chr6_4:993170-993189 Msa0969520:CDS 40.0%
CAGTAATATGCACCAGAATC+AGG + chr6_4:993258-993277 None:intergenic 40.0%
TTCTGGTGCATATTACTGCA+AGG - chr6_4:993260-993279 Msa0969520:intron 40.0%
TCTGGTGCATATTACTGCAA+GGG - chr6_4:993261-993280 Msa0969520:intron 40.0%
TGTGAAGCATGTGTTCCATA+TGG - chr6_4:993287-993306 Msa0969520:intron 40.0%
ATGTGTTCCATATGGTTCCA+AGG - chr6_4:993295-993314 Msa0969520:intron 40.0%
GCAGTGTTTGTGATGTTTGA+TGG - chr6_4:993436-993455 Msa0969520:intron 40.0%
TTAGTTTCTGCAGCCAAAGT+TGG - chr6_4:993496-993515 Msa0969520:intron 40.0%
TTCTCCTGGTGATATTGTTG+TGG - chr6_4:993529-993548 Msa0969520:CDS 40.0%
GAAACCACAACAATATCACC+AGG + chr6_4:993536-993555 None:intergenic 40.0%
CCCTTCAAACTAACAATCTC+AGG + chr6_4:993643-993662 None:intergenic 40.0%
! GGGAAGGATGATGTTGTTTA+AGG - chr6_4:993660-993679 Msa0969520:intron 40.0%
ATGGATCTTATAGGGTGAAG+AGG - chr6_4:993716-993735 Msa0969520:CDS 40.0%
TGGATCTTATAGGGTGAAGA+GGG - chr6_4:993717-993736 Msa0969520:CDS 40.0%
!! AGCTGTTGCGTTTTGATGTA+TGG - chr6_4:993828-993847 Msa0969520:intron 40.0%
AATGGAAAGCAATCGGTCTT+AGG + chr6_4:993854-993873 None:intergenic 40.0%
!! TGAGGTTAGTGATTTGGTAG+AGG - chr6_4:993902-993921 Msa0969520:intron 40.0%
!! TAGTGATTTGGTAGAGGATC+TGG - chr6_4:993908-993927 Msa0969520:intron 40.0%
!! TCTTTTGGTTGCAGTAGTGT+AGG - chr6_4:994037-994056 Msa0969520:CDS 40.0%
CTAGCCTGCAAACAATTCAT+GGG + chr6_4:994205-994224 None:intergenic 40.0%
TCTAGCCTGCAAACAATTCA+TGG + chr6_4:994206-994225 None:intergenic 40.0%
AGCATCTCACTCACTTTGTT+TGG + chr6_4:994477-994496 None:intergenic 40.0%
AATGTGCAGTTTGTGTCTGA+TGG - chr6_4:994502-994521 Msa0969520:CDS 40.0%
! GATGCTGAGTTGAGTGAATT+GGG - chr6_4:994529-994548 Msa0969520:CDS 40.0%
TGTTGAGGAGACACAAATTG+AGG - chr6_4:994567-994586 Msa0969520:CDS 40.0%
GACACAAATTGAGGATTTCG+TGG - chr6_4:994576-994595 Msa0969520:CDS 40.0%
TTTAAAAGTCCAGACCTGTC+AGG - chr6_4:994872-994891 Msa0969520:intron 40.0%
AGCTAAGAGAAATTTGCGCA+AGG - chr6_4:994931-994950 Msa0969520:CDS 40.0%
TTGTTCCTGGTAGAGAGTCA+TGG - chr6_4:991834-991853 Msa0969520:CDS 45.0%
TAGAGAGTCATGGAGGATCA+AGG - chr6_4:991844-991863 Msa0969520:CDS 45.0%
! TCAACAGAGTTAGCCTGATC+AGG + chr6_4:991911-991930 None:intergenic 45.0%
TCAGGCTAACTCTGTTGAGA+TGG - chr6_4:991913-991932 Msa0969520:CDS 45.0%
! TCCCTTTTCCTTCCTTTCGT+AGG - chr6_4:992066-992085 Msa0969520:intron 45.0%
CCCTACGAAAGGAAGGAAAA+GGG + chr6_4:992070-992089 None:intergenic 45.0%
! CCCTTTTCCTTCCTTTCGTA+GGG - chr6_4:992067-992086 Msa0969520:intron 45.0%
ACCCTACGAAAGGAAGGAAA+AGG + chr6_4:992071-992090 None:intergenic 45.0%
! TTTTCCTTCCTTTCGTAGGG+TGG - chr6_4:992070-992089 Msa0969520:intron 45.0%
TTTCCTTCCTTTCGTAGGGT+GGG - chr6_4:992071-992090 Msa0969520:intron 45.0%
!! CAGAAGAAGTTGGTAGAAGG+AGG - chr6_4:992136-992155 Msa0969520:intron 45.0%
AGTTCACTTATCCCTGTGCA+TGG - chr6_4:992271-992290 Msa0969520:CDS 45.0%
GTAACCACATCAAACCACAC+TGG + chr6_4:992365-992384 None:intergenic 45.0%
ATCCCTAACGTACTCTCTCT+CGG + chr6_4:992469-992488 None:intergenic 45.0%
AGAGTACGTTAGGGATGGAA+AGG - chr6_4:992473-992492 Msa0969520:intron 45.0%
AAGGTTGAGTGTGCGTTGTT+TGG - chr6_4:992623-992642 Msa0969520:intron 45.0%
! TTCTCTCCAGAAGATGATGG+GGG - chr6_4:992658-992677 Msa0969520:intron 45.0%
!! GGTGAATCCTCCTTTTGAAG+AGG - chr6_4:992861-992880 Msa0969520:intron 45.0%
TTCACAGCCTCTTCAAAAGG+AGG + chr6_4:992871-992890 None:intergenic 45.0%
CACTAGAAGGTTCAATGCCA+TGG + chr6_4:993041-993060 None:intergenic 45.0%
AGCGAAGGAACAACACTAGA+AGG + chr6_4:993054-993073 None:intergenic 45.0%
! TCTAGTGTTGTTCCTTCGCT+TGG - chr6_4:993054-993073 Msa0969520:CDS 45.0%
CATTAGGCCTTCGATTGAAG+AGG - chr6_4:993083-993102 Msa0969520:CDS 45.0%
! TGAGTTGAATGCCATTGTGG+AGG - chr6_4:993140-993159 Msa0969520:CDS 45.0%
TTGAATGCCATTGTGGAGGA+TGG - chr6_4:993144-993163 Msa0969520:CDS 45.0%
TGAATGCCATTGTGGAGGAT+GGG - chr6_4:993145-993164 Msa0969520:CDS 45.0%
! TGTTGTGGAAGGTTTGGTTG+AGG - chr6_4:993185-993204 Msa0969520:CDS 45.0%
! GTTGTGGAAGGTTTGGTTGA+GGG - chr6_4:993186-993205 Msa0969520:CDS 45.0%
! TTGTGGAAGGTTTGGTTGAG+GGG - chr6_4:993187-993206 Msa0969520:CDS 45.0%
!! AGGAGTGTTACTCCTGATTC+TGG - chr6_4:993243-993262 Msa0969520:intron 45.0%
CTGGTGCATATTACTGCAAG+GGG - chr6_4:993262-993281 Msa0969520:intron 45.0%
CTCTGTTAGGCTGAAAATGC+TGG - chr6_4:993607-993626 Msa0969520:CDS 45.0%
GGAATTCTGCACTTCTGTCA+AGG - chr6_4:993765-993784 Msa0969520:CDS 45.0%
!! GGGTTCTGAGGTTAGTGATT+TGG - chr6_4:993896-993915 Msa0969520:intron 45.0%
CTGCATGAAGTCATTGCCTT+TGG - chr6_4:994152-994171 Msa0969520:CDS 45.0%
! GGATGCTGAGTTGAGTGAAT+TGG - chr6_4:994528-994547 Msa0969520:CDS 45.0%
! TGAGTTGAGTGAATTGGGTG+AGG - chr6_4:994534-994553 Msa0969520:CDS 45.0%
GTCGTGTGTCTGATACATCT+GGG - chr6_4:994623-994642 Msa0969520:CDS 45.0%
AAACTTACAGCCTCACATCC+AGG + chr6_4:994833-994852 None:intergenic 45.0%
TGGATGTGAGGCTGTAAGTT+TGG - chr6_4:994832-994851 Msa0969520:intron 45.0%
ATGTGAGGCTGTAAGTTTGG+CGG - chr6_4:994835-994854 Msa0969520:intron 45.0%
CTACTGCTGCTGAGAAGAAT+GGG - chr6_4:994897-994916 Msa0969520:CDS 45.0%
TACTGCTGCTGAGAAGAATG+GGG - chr6_4:994898-994917 Msa0969520:CDS 45.0%
!! CTTGGTTTTCTTGGTGGTAG+TGG + chr6_4:994984-995003 None:intergenic 45.0%
CACTACCACCAAGAAAACCA+AGG - chr6_4:994982-995001 Msa0969520:CDS 45.0%
!! TTTGGGAGCCTTGGTTTTCT+TGG + chr6_4:994993-995012 None:intergenic 45.0%
TTCCTGGTAGAGAGTCATGG+AGG - chr6_4:991837-991856 Msa0969520:CDS 50.0%
ATCCTCCATGACTCTCTACC+AGG + chr6_4:991842-991861 None:intergenic 50.0%
GAATCTTCCCACCCTACGAA+AGG + chr6_4:992081-992100 None:intergenic 50.0%
TCATACTTTGCAGTTGCCCC+TGG - chr6_4:992172-992191 Msa0969520:CDS 50.0%
TACGGTATGAGCCAACACCA+GGG + chr6_4:992192-992211 None:intergenic 50.0%
TCGGAGAAAGTCCATGCACA+GGG + chr6_4:992285-992304 None:intergenic 50.0%
ATCGGAGAAAGTCCATGCAC+AGG + chr6_4:992286-992305 None:intergenic 50.0%
!! TTTGGTTGGTGAGTCCAGTG+TGG - chr6_4:992348-992367 Msa0969520:intron 50.0%
GAGTCCAGTGTGGTTTGATG+TGG - chr6_4:992358-992377 Msa0969520:intron 50.0%
! TGCCGAGAGAGAGTACGTTA+GGG - chr6_4:992464-992483 Msa0969520:intron 50.0%
! GAGAGAGAGTACGTTAGGGA+TGG - chr6_4:992468-992487 Msa0969520:intron 50.0%
!! AGAAGATGATGGGGGAAGCT+GGG - chr6_4:992666-992685 Msa0969520:intron 50.0%
TCAATCGAAGGCCTAATGCG+AGG + chr6_4:993081-993100 None:intergenic 50.0%
! GTTGTCTGTGCTGTTGTGGA+AGG - chr6_4:993174-993193 Msa0969520:CDS 50.0%
! CTGTGCTGTTGTGGAAGGTT+TGG - chr6_4:993179-993198 Msa0969520:CDS 50.0%
! TGTGGAAGGTTTGGTTGAGG+GGG - chr6_4:993188-993207 Msa0969520:CDS 50.0%
GGTGACATGCAACTGTTGCT+TGG - chr6_4:993457-993476 Msa0969520:intron 50.0%
TCGAGAAGACTGCATCTGCA+GGG - chr6_4:993683-993702 Msa0969520:intron 50.0%
TCTGCAGGGGTCATGTTTGA+TGG - chr6_4:993697-993716 Msa0969520:intron 50.0%
CTCTGATGTTGTGGGTTCTG+AGG - chr6_4:993884-993903 Msa0969520:intron 50.0%
GGATGTTGCTGAAGAGACAC+CGG - chr6_4:993929-993948 Msa0969520:intron 50.0%
ATGATTCACGATGGCGCCAA+AGG + chr6_4:994171-994190 None:intergenic 50.0%
! GCAGTTTGTGTCTGATGGTG+TGG - chr6_4:994507-994526 Msa0969520:CDS 50.0%
TGAATTGGGTGAGGATCCAG+AGG - chr6_4:994543-994562 Msa0969520:CDS 50.0%
TGAGGATCCAGAGGTTGTTG+AGG - chr6_4:994552-994571 Msa0969520:CDS 50.0%
TGTGTCTCCTCAACAACCTC+TGG + chr6_4:994562-994581 None:intergenic 50.0%
GGTCGTGTGTCTGATACATC+TGG - chr6_4:994622-994641 Msa0969520:CDS 50.0%
ACATCCAGGATCCACAGCTA+GGG + chr6_4:994819-994838 None:intergenic 50.0%
! GCTGTAAGTTTGGCGGATGA+TGG - chr6_4:994842-994861 Msa0969520:intron 50.0%
GCTACTGCTGCTGAGAAGAA+TGG - chr6_4:994896-994915 Msa0969520:CDS 50.0%
CAGATCAAGTTTGGGAGCCT+TGG + chr6_4:995002-995021 None:intergenic 50.0%
CAAGGCTCCCAAACTTGATC+TGG - chr6_4:995000-995019 Msa0969520:CDS 50.0%
GGATCAAGGTGCGTGTGCTT+AGG - chr6_4:991858-991877 Msa0969520:CDS 55.0%
AGGTGCGTGTGCTTAGGATG+TGG - chr6_4:991864-991883 Msa0969520:CDS 55.0%
GGTGCGTGTGCTTAGGATGT+GGG - chr6_4:991865-991884 Msa0969520:CDS 55.0%
CTTCCCACCCTACGAAAGGA+AGG + chr6_4:992077-992096 None:intergenic 55.0%
TTTGCAGTTGCCCCTGGTGT+TGG - chr6_4:992178-992197 Msa0969520:CDS 55.0%
ACGGTATGAGCCAACACCAG+GGG + chr6_4:992191-992210 None:intergenic 55.0%
GTACGGTATGAGCCAACACC+AGG + chr6_4:992193-992212 None:intergenic 55.0%
! CTGCCGAGAGAGAGTACGTT+AGG - chr6_4:992463-992482 Msa0969520:intron 55.0%
CAGCTTCCCCCATCATCTTC+TGG + chr6_4:992667-992686 None:intergenic 55.0%
!! CAGAAGATGATGGGGGAAGC+TGG - chr6_4:992665-992684 Msa0969520:intron 55.0%
!! GAAGATGATGGGGGAAGCTG+GGG - chr6_4:992667-992686 Msa0969520:intron 55.0%
! GGAAGGATTGCCGGTTGTTG+TGG - chr6_4:992688-992707 Msa0969520:intron 55.0%
CTAATGCGAGGACCAAGCGA+AGG + chr6_4:993069-993088 None:intergenic 55.0%
CTTCGCTTGGTCCTCGCATT+AGG - chr6_4:993067-993086 Msa0969520:CDS 55.0%
GTTTGGTTGAGGGGGAGGAT+TGG - chr6_4:993196-993215 Msa0969520:intron 55.0%
ATCCTGCGCGTCGTTGTCAT+AGG - chr6_4:993223-993242 Msa0969520:intron 55.0%
GTCGAGAAGACTGCATCTGC+AGG - chr6_4:993682-993701 Msa0969520:intron 55.0%
CGAGAAGACTGCATCTGCAG+GGG - chr6_4:993684-993703 Msa0969520:intron 55.0%
GTATCAGACACACGACCCAC+TGG + chr6_4:994619-994638 None:intergenic 55.0%
TTTGCAGCAGACCCTAGCTG+TGG - chr6_4:994805-994824 Msa0969520:intron 55.0%
CACATCCAGGATCCACAGCT+AGG + chr6_4:994820-994839 None:intergenic 55.0%
AGCTGTGGATCCTGGATGTG+AGG - chr6_4:994820-994839 Msa0969520:intron 55.0%
! CGCAAGGCATTTGACGCAGT+TGG - chr6_4:994947-994966 Msa0969520:CDS 55.0%
!! GGGAGCCTTGGTTTTCTTGG+TGG + chr6_4:994990-995009 None:intergenic 55.0%
GCGTGTGCTTAGGATGTGGG+AGG - chr6_4:991868-991887 Msa0969520:CDS 60.0%
CGGTGTGGGCGCAAACTTCT+TGG + chr6_4:992315-992334 None:intergenic 60.0%
! ATGATGGGGGAAGCTGGGGA+AGG - chr6_4:992671-992690 Msa0969520:intron 60.0%
GGAAGCTGGGGAAGGATTGC+CGG - chr6_4:992679-992698 Msa0969520:intron 60.0%
! GGAAGGTTTGGTTGAGGGGG+AGG - chr6_4:993191-993210 Msa0969520:CDS 60.0%
TGGTTGAGGGGGAGGATTGG+TGG - chr6_4:993199-993218 Msa0969520:intron 60.0%
CTCCTATGACAACGACGCGC+AGG + chr6_4:993228-993247 None:intergenic 60.0%
TGCTGAAGAGACACCGGCCA+AGG - chr6_4:993935-993954 Msa0969520:intron 60.0%
CAGACCCTAGCTGTGGATCC+TGG - chr6_4:994812-994831 Msa0969520:intron 60.0%
GCAGTAGCTCCTGACAGGTC+TGG + chr6_4:994884-994903 None:intergenic 60.0%
CAGCAGCAGTAGCTCCTGAC+AGG + chr6_4:994889-994908 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 991803 995027 991803 ID=Msa0969520;Name=Msa0969520
chr6_4 mRNA 991803 995027 991803 ID=Msa0969520-mRNA-1;Parent=Msa0969520;Name=Msa0969520-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0|0|0.9|0.44|0.5|10|0|507
chr6_4 exon 994878 995027 994878 ID=Msa0969520-mRNA-1:exon:557;Parent=Msa0969520-mRNA-1
chr6_4 exon 994475 994691 994475 ID=Msa0969520-mRNA-1:exon:556;Parent=Msa0969520-mRNA-1
chr6_4 exon 994324 994394 994324 ID=Msa0969520-mRNA-1:exon:555;Parent=Msa0969520-mRNA-1
chr6_4 exon 993993 994204 993993 ID=Msa0969520-mRNA-1:exon:554;Parent=Msa0969520-mRNA-1
chr6_4 exon 993716 993801 993716 ID=Msa0969520-mRNA-1:exon:553;Parent=Msa0969520-mRNA-1
chr6_4 exon 993514 993634 993514 ID=Msa0969520-mRNA-1:exon:552;Parent=Msa0969520-mRNA-1
chr6_4 exon 993317 993434 993317 ID=Msa0969520-mRNA-1:exon:551;Parent=Msa0969520-mRNA-1
chr6_4 exon 993044 993214 993044 ID=Msa0969520-mRNA-1:exon:550;Parent=Msa0969520-mRNA-1
chr6_4 exon 992158 992319 992158 ID=Msa0969520-mRNA-1:exon:549;Parent=Msa0969520-mRNA-1
chr6_4 exon 991803 992018 991803 ID=Msa0969520-mRNA-1:exon:548;Parent=Msa0969520-mRNA-1
chr6_4 CDS 994878 995027 994878 ID=Msa0969520-mRNA-1:cds;Parent=Msa0969520-mRNA-1
chr6_4 CDS 994475 994691 994475 ID=Msa0969520-mRNA-1:cds;Parent=Msa0969520-mRNA-1
chr6_4 CDS 994324 994394 994324 ID=Msa0969520-mRNA-1:cds;Parent=Msa0969520-mRNA-1
chr6_4 CDS 993993 994204 993993 ID=Msa0969520-mRNA-1:cds;Parent=Msa0969520-mRNA-1
chr6_4 CDS 993716 993801 993716 ID=Msa0969520-mRNA-1:cds;Parent=Msa0969520-mRNA-1
chr6_4 CDS 993514 993634 993514 ID=Msa0969520-mRNA-1:cds;Parent=Msa0969520-mRNA-1
chr6_4 CDS 993317 993434 993317 ID=Msa0969520-mRNA-1:cds;Parent=Msa0969520-mRNA-1
chr6_4 CDS 993044 993214 993044 ID=Msa0969520-mRNA-1:cds;Parent=Msa0969520-mRNA-1
chr6_4 CDS 992158 992319 992158 ID=Msa0969520-mRNA-1:cds;Parent=Msa0969520-mRNA-1
chr6_4 CDS 991803 992018 991803 ID=Msa0969520-mRNA-1:cds;Parent=Msa0969520-mRNA-1
Gene Sequence

>Msa0969520

ATGGATAAATCCATTGATTGTTTGTGTGATATTGTTCCTGGTAGAGAGTCATGGAGGATCAAGGTGCGTGTGCTTAGGATGTGGGAGGTCCCAACCTTTTTGAAACCTGATCAGGCTAACTCTGTTGAGATGGTTTTGATTGATGAGAAGAAGAAGTTGGTAGAAGGAGGAGTGTACAAGATGTCATACTTTGCAGTTGCCCCTGGTGTTGGCTCATACCGTACTACCATTCATCCATATAAGCTGATATTTCAAATGAAGACAAAGGTGGAGAGGGTTGAGAGTTCACTTATCCCTGTGCATGGACTTTCTCCGATTAAGATCCAAGAAGTTTGCGCCCACACCGCTGATTATGATTATTTGGTTGATGTTGTTGGTTTGATGACTGGGATTTCTGCCGAGAGAGAGTACGTTAGGGATGGAAAGGTTACTAAGATGGTTGAGTGTGCGTTGTTTGGAAGCTATGTTGATTCTCTCCAGAAGATGATGGGGGAAGCTGGGGAAGGATTGCCGGTTGTTGTGGTTCAATTTGCGAAAATTAAAATATTCCGAGGTATAAATTTTCTGTCCTGTTTGCCTGTTTATTTGCATTTTGTAATTTATGGGTCAAGCTTATCTGTTTATATGCAGAGAGGGTCTCTATGTAGAATTGTTGCAATCCATGGCATTGAACCTTCTAGTGTTGTTCCTTCGCTTGGTCCTCGCATTAGGCCTTCGATTGAAGAGGATTTCTTGCGTTTGGTTGAGGGGGAGGATTGGTGGTATCCTGCGCGTCGTTGTCATAGGAGTGTTACTCCTGATTCTGGTGCATATTACTGCAAGGGGTGTGTGAAGCATGTGTTCCATATGGTTCCAAGGTATAAGGTGAAGCTCAGTGTGAGAGATTCTACATCAGATGCAGTGTTTGTGATGTTTGATGGTGACATGCAACTGTTGCTTGGTGAGCAGTGTAGCGACTTAGTTTCTGCAGCCAAAGCTGAAAATGCTGGATTTTATCCTCCTGAGATTGTTAGTTTGAAGGGAAGGATGATGTTGTTTAAGGTCGAGAAGACTGCATCTGCAGGGGTCATGTTTGATGGATCTTATAGGGTGAAGAGGGTTTGTGTTGATCCATCTATTGTTGAGGAATTCTGCACTTCTGTCAAGTTTGTGTCTGATGGTGTGGATGCTGAGTTGAGTGAATTGGGTGAGGATCCAGAGGTTGTTGAGGAGACACAAATTGAGGATTTCGTGGCTAATGTTGTTGTTACTCCAGTGGGTCGTGTGTCTGATACATCTGGGTATGAAAATACTGCTCCAGTTCTTAAGCAGACCCTAGCTGTGGATCCTGGATGTGAGGCTGTAAGTTTGGCGGATGATGGTACTGTCTTTAAAAGTCCAGACCTGTCAGGAGCTACTGCTGCTGAGAAGAATGGGGCTGTCAACAAAGCTAAGAGAAATTTGCGCAAGGCATTTGACGCAGTTGGTCGTGACAAGTCCACTACCACCAAGAAAACCAAGGCTCCCAAACTTGATCTGGATTGA

Protein sequence

>Msa0969520

MDKSIDCLCDIVPGRESWRIKVRVLRMWEVPTFLKPDQANSVEMVLIDEKKKLVEGGVYKMSYFAVAPGVGSYRTTIHPYKLIFQMKTKVERVESSLIPVHGLSPIKIQEVCAHTADYDYLVDVVGLMTGISAEREYVRDGKVTKMVECALFGSYVDSLQKMMGEAGEGLPVVVVQFAKIKIFRGINFLSCLPVYLHFVIYGSSLSVYMQRGSLCRIVAIHGIEPSSVVPSLGPRIRPSIEEDFLRLVEGEDWWYPARRCHRSVTPDSGAYYCKGCVKHVFHMVPRYKVKLSVRDSTSDAVFVMFDGDMQLLLGEQCSDLVSAAKAENAGFYPPEIVSLKGRMMLFKVEKTASAGVMFDGSYRVKRVCVDPSIVEEFCTSVKFVSDGVDAELSELGEDPEVVEETQIEDFVANVVVTPVGRVSDTSGYENTAPVLKQTLAVDPGCEAVSLADDGTVFKSPDLSGATAAEKNGAVNKAKRNLRKAFDAVGRDKSTTTKKTKAPKLDLD*