AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0934920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0934920 MtrunA17_Chr6g0451051 82.716 162 21 1 1 162 1 155 6.24e-95 271
Msa0934920 MtrunA17_Chr6g0451031 66.165 133 41 3 1 133 1 129 7.86e-60 181
Msa0934920 MtrunA17_Chr6g0451041 79.381 97 19 1 59 154 3 99 1.02e-50 157
Msa0934920 MtrunA17_Chr3g0117821 41.538 130 66 3 1 120 3 132 5.26e-32 112
Msa0934920 MtrunA17_Chr3g0123631 32.886 149 96 2 3 147 1 149 2.96e-22 87.8
Msa0934920 MtrunA17_Chr3g0123641 32.895 152 98 2 3 150 1 152 9.26e-22 87.8
Msa0934920 MtrunA17_Chr6g0486651 30.968 155 99 3 3 151 45 197 5.38e-19 82.4
Msa0934920 MtrunA17_Chr4g0059281 32.331 133 77 3 3 122 49 181 5.47e-18 79.0
Msa0934920 MtrunA17_Chr2g0295571 34.959 123 59 2 37 141 86 205 1.39e-17 77.4
Msa0934920 MtrunA17_Chr6g0451161 34.091 132 68 3 3 118 76 204 3.29e-17 77.4
Msa0934920 MtrunA17_Chr2g0307411 37.719 114 67 2 3 116 34 143 7.55e-17 73.9
Msa0934920 MtrunA17_Chr2g0297011 43.210 81 46 0 43 123 72 152 9.27e-17 73.2
Msa0934920 MtrunA17_Chr8g0364881 43.421 76 43 0 47 122 68 143 1.85e-16 75.1
Msa0934920 MtrunA17_Chr4g0027761 37.234 94 56 2 45 138 98 188 3.51e-16 72.4
Msa0934920 MtrunA17_Chr3g0132491 35.000 120 66 4 7 116 62 179 3.95e-16 74.3
Msa0934920 MtrunA17_Chr4g0073141 46.154 91 46 2 69 157 140 229 5.53e-16 74.3
Msa0934920 MtrunA17_Chr5g0407431 35.514 107 62 2 46 150 76 177 5.85e-16 72.0
Msa0934920 MtrunA17_Chr5g0413841 36.735 98 62 0 24 121 93 190 6.22e-16 73.6
Msa0934920 MtrunA17_Chr3g0143301 30.833 120 79 2 5 124 7 122 8.97e-16 69.7
Msa0934920 MtrunA17_Chr5g0427431 42.105 76 44 0 43 118 130 205 1.30e-15 73.2
Msa0934920 MtrunA17_Chr7g0244851 36.364 88 56 0 45 132 79 166 2.44e-15 69.7
Msa0934920 MtrunA17_Chr7g0269491 44.118 68 36 1 53 118 72 139 4.36e-15 69.3
Msa0934920 MtrunA17_Chr3g0128771 39.744 78 45 1 40 115 84 161 6.71e-15 68.6
Msa0934920 MtrunA17_Chr3g0133001 40.789 76 45 0 43 118 126 201 7.19e-15 70.9
Msa0934920 MtrunA17_Chr1g0191601 30.081 123 76 3 3 116 49 170 8.08e-15 70.5
Msa0934920 MtrunA17_Chr3g0105441 41.000 100 51 3 54 150 118 212 9.85e-15 69.3
Msa0934920 MtrunA17_Chr2g0317671 42.308 78 42 1 42 116 125 202 1.16e-14 68.6
Msa0934920 MtrunA17_Chr4g0060981 45.833 72 38 1 47 118 149 219 1.25e-14 68.6
Msa0934920 MtrunA17_Chr8g0345361 39.024 82 49 1 53 134 98 178 1.27e-14 68.9
Msa0934920 MtrunA17_Chr5g0406031 39.189 74 43 1 44 115 158 231 1.28e-14 68.9
Msa0934920 MtrunA17_Chr1g0157091 34.211 114 67 4 5 116 7 114 1.30e-14 66.6
Msa0934920 MtrunA17_Chr1g0198201 30.909 110 62 3 39 138 53 158 1.30e-14 68.6
Msa0934920 MtrunA17_Chr5g0444161 36.585 82 50 1 42 121 152 233 1.94e-14 68.2
Msa0934920 MtrunA17_Chr3g0129671 34.532 139 84 5 1 135 61 196 2.23e-14 68.2
Msa0934920 MtrunA17_Chr8g0370171 42.466 73 40 1 46 116 69 141 2.70e-14 67.4
Msa0934920 MtrunA17_Chr2g0325141 28.462 130 79 2 3 118 7 136 2.90e-14 66.2
Msa0934920 MtrunA17_Chr8g0371291 39.130 69 38 1 47 115 158 222 3.55e-14 67.4
Msa0934920 MtrunA17_Chr1g0203541 33.884 121 64 5 31 142 92 205 4.98e-14 66.6
Msa0934920 MtrunA17_Chr5g0426881 32.824 131 80 4 5 127 69 199 5.55e-14 68.2
Msa0934920 MtrunA17_Chr8g0345381 46.154 52 28 0 73 124 53 104 5.70e-14 65.5
Msa0934920 MtrunA17_Chr5g0409201 30.769 130 75 4 7 123 16 143 6.16e-14 65.5
Msa0934920 MtrunA17_Chr6g0470751 29.787 141 91 3 6 140 58 196 6.47e-14 67.8
Msa0934920 MtrunA17_Chr4g0067591 36.986 73 44 1 46 118 79 149 9.63e-14 67.0
Msa0934920 MtrunA17_Chr4g0010171 32.576 132 73 4 1 124 41 164 1.05e-13 65.5
Msa0934920 MtrunA17_Chr5g0433861 34.400 125 70 4 7 120 30 153 1.18e-13 67.0
Msa0934920 MtrunA17_Chr7g0237871 30.435 161 94 5 1 153 78 228 1.44e-13 65.9
Msa0934920 MtrunA17_Chr2g0301871 43.939 66 34 1 56 118 63 128 2.42e-13 65.9
Msa0934920 MtrunA17_Chr2g0327791 36.735 98 50 3 53 148 113 200 2.61e-13 65.1
Msa0934920 MtrunA17_Chr3g0144241 42.466 73 41 1 46 118 78 149 2.75e-13 64.7
Msa0934920 MtrunA17_Chr8g0343571 35.714 84 54 0 59 142 71 154 2.91e-13 63.9
Msa0934920 MtrunA17_Chr8g0383931 56.818 44 19 0 72 115 140 183 3.01e-13 65.1
Msa0934920 MtrunA17_Chr8g0383901 56.818 44 19 0 72 115 130 173 3.36e-13 64.7
Msa0934920 MtrunA17_Chr7g0273051 27.068 133 85 3 3 126 44 173 3.69e-13 65.9
Msa0934920 MtrunA17_Chr7g0276591 39.706 68 40 1 53 120 82 148 3.79e-13 65.5
Msa0934920 MtrunA17_Chr8g0383941 40.845 71 41 1 46 115 106 176 4.15e-13 64.3
Msa0934920 MtrunA17_Chr2g0300331 39.316 117 61 5 36 144 125 239 4.54e-13 64.7
Msa0934920 MtrunA17_Chr3g0112041 31.683 101 58 2 20 120 170 259 5.37e-13 64.7
Msa0934920 MtrunA17_Chr3g0126931 34.118 85 56 0 53 137 107 191 5.51e-13 65.5
Msa0934920 MtrunA17_Chr8g0345401 41.509 53 31 0 73 125 49 101 6.05e-13 62.8
Msa0934920 MtrunA17_Chr8g0383871 40.845 71 41 1 46 115 111 181 6.41e-13 63.9
Msa0934920 MtrunA17_Chr8g0383881 41.892 74 40 2 44 115 100 172 6.56e-13 63.9
Msa0934920 MtrunA17_Chr8g0383921 40.845 71 41 1 46 115 110 180 7.56e-13 63.5
Msa0934920 MtrunA17_Chr8g0383861 41.892 74 40 2 44 115 110 182 7.75e-13 63.9
Msa0934920 MtrunA17_Chr1g0186661 30.714 140 78 4 31 151 81 220 7.90e-13 64.7
Msa0934920 MtrunA17_Chr3g0113811 30.827 133 85 4 3 128 30 162 9.57e-13 62.8
Msa0934920 MtrunA17_Chr3g0118071 32.540 126 65 6 7 116 26 147 1.12e-12 63.2
Msa0934920 MtrunA17_Chr5g0437361 36.047 86 49 2 35 116 63 146 1.42e-12 62.0
Msa0934920 MtrunA17_Chr8g0369571 32.727 110 67 2 11 116 27 133 1.93e-12 62.0
Msa0934920 MtrunA17_Chr5g0409211 29.530 149 76 5 5 134 14 152 2.10e-12 62.0
Msa0934920 MtrunA17_Chr1g0184171 31.522 92 59 2 34 124 93 181 2.30e-12 63.5
Msa0934920 MtrunA17_Chr4g0052671 39.744 78 45 1 43 118 74 151 2.86e-12 60.8
Msa0934920 MtrunA17_Chr8g0366561 49.057 53 27 0 72 124 141 193 2.95e-12 63.2
Msa0934920 MtrunA17_Chr4g0073131 41.053 95 45 4 52 142 81 168 3.87e-12 61.2
Msa0934920 MtrunA17_Chr4g0031911 39.759 83 40 3 60 138 192 268 3.95e-12 62.4
Msa0934920 MtrunA17_Chr5g0444141 32.075 106 62 3 26 121 163 268 4.07e-12 62.4
Msa0934920 MtrunA17_Chr7g0274711 37.333 75 47 0 72 146 95 169 5.24e-12 60.8
Msa0934920 MtrunA17_Chr8g0336881 37.681 69 40 1 53 118 82 150 5.53e-12 62.4
Msa0934920 MtrunA17_Chr4g0030831 38.235 68 40 1 53 118 90 157 6.25e-12 60.5
Msa0934920 MtrunA17_Chr1g0184631 38.462 78 47 1 72 148 96 173 6.90e-12 60.5
Msa0934920 MtrunA17_Chr7g0274741 35.135 74 45 1 46 116 69 142 7.50e-12 60.5
Msa0934920 MtrunA17_Chr2g0305161 51.923 52 24 1 67 118 136 186 8.02e-12 60.5
Msa0934920 MtrunA17_Chr7g0275601 38.043 92 50 3 32 122 73 158 8.42e-12 60.1
Msa0934920 MtrunA17_Chr1g0169651 53.191 47 21 1 72 118 682 727 1.90e-11 61.2
Msa0934920 MtrunA17_Chr2g0325161 39.130 69 36 1 56 118 100 168 2.15e-11 60.1
Msa0934920 MtrunA17_Chr5g0430781 36.047 86 49 2 46 128 86 168 2.40e-11 59.7
Msa0934920 MtrunA17_Chr3g0124531 38.261 115 54 7 5 118 16 114 2.91e-11 58.5
Msa0934920 MtrunA17_Chr4g0065171 45.614 57 29 2 63 118 474 529 2.94e-11 60.5
Msa0934920 MtrunA17_Chr4g0031921 42.667 75 34 3 64 138 203 268 3.85e-11 59.7
Msa0934920 MtrunA17_Chr3g0138451 40.909 66 38 1 73 138 317 381 3.94e-11 60.1
Msa0934920 MtrunA17_Chr8g0381731 29.592 98 67 1 48 143 149 246 4.05e-11 59.7
Msa0934920 MtrunA17_Chr3g0081611 44.444 54 27 1 62 115 100 150 4.89e-11 58.2
Msa0934920 MtrunA17_Chr3g0126611 28.689 122 74 3 5 116 256 374 5.44e-11 59.7
Msa0934920 MtrunA17_Chr5g0411081 46.809 47 25 0 72 118 147 193 5.92e-11 59.7
Msa0934920 MtrunA17_Chr8g0347461 31.034 87 57 2 53 136 117 203 6.56e-11 59.3
Msa0934920 MtrunA17_Chr7g0274721 34.091 88 55 2 31 116 50 136 7.42e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0934920 AT3G48030.2 31.720 186 92 8 5 162 49 227 4.12e-20 84.3
Msa0934920 AT3G48030.1 31.720 186 92 8 5 162 127 305 1.05e-19 84.3
Msa0934920 AT5G01880.1 44.304 79 42 1 37 115 71 147 1.10e-17 75.9
Msa0934920 AT4G28890.1 36.735 98 61 1 34 131 85 181 1.54e-17 79.0
Msa0934920 AT1G23980.1 30.769 143 72 2 5 120 49 191 4.62e-17 77.4
Msa0934920 AT5G57750.1 36.207 116 65 2 35 141 83 198 5.06e-17 75.1
Msa0934920 AT3G16720.1 33.913 115 64 3 37 151 86 188 1.01e-16 75.9
Msa0934920 AT1G74410.1 45.205 73 40 0 46 118 149 221 1.58e-16 73.9
Msa0934920 AT4G09110.1 33.613 119 70 3 3 116 52 166 1.72e-16 75.1
Msa0934920 AT1G72310.1 33.036 112 70 3 48 155 103 213 3.10e-16 74.7
Msa0934920 AT4G40070.1 32.317 164 100 6 3 162 50 206 1.18e-15 73.2
Msa0934920 AT1G53820.1 42.308 78 37 2 71 143 118 192 2.16e-15 72.0
Msa0934920 AT5G40250.1 31.214 173 89 6 5 147 52 224 3.06e-15 72.4
Msa0934920 AT2G17450.1 38.750 80 42 1 46 118 68 147 5.55e-15 69.3
Msa0934920 AT3G05200.1 29.054 148 88 4 3 141 49 188 5.70e-15 71.6
Msa0934920 AT3G60220.1 39.773 88 45 2 53 132 94 181 5.97e-15 71.2
Msa0934920 AT4G09120.1 33.613 119 70 3 3 116 52 166 6.78e-15 71.2
Msa0934920 AT2G20030.1 35.135 111 63 2 48 150 99 208 7.06e-15 71.2
Msa0934920 AT3G14320.1 40.789 76 44 1 43 118 59 133 7.88e-15 69.3
Msa0934920 AT4G30400.1 48.438 64 32 1 53 115 113 176 8.35e-15 71.2
Msa0934920 AT2G18650.1 56.250 48 21 0 69 116 122 169 1.34e-14 70.5
Msa0934920 AT5G05810.1 45.455 66 36 0 53 118 126 191 1.38e-14 70.5
Msa0934920 AT4G30370.1 41.667 72 42 0 47 118 89 160 1.71e-14 67.8
Msa0934920 AT2G17730.1 37.805 82 47 2 38 115 157 238 1.91e-14 68.9
Msa0934920 AT4G09130.1 33.058 121 71 2 35 145 79 199 2.03e-14 69.7
Msa0934920 AT3G62690.1 36.364 88 56 0 31 118 71 158 2.19e-14 68.9
Msa0934920 AT4G09100.1 40.506 79 44 1 43 118 52 130 2.36e-14 66.2
Msa0934920 AT5G42200.1 34.211 114 73 1 5 116 34 147 3.28e-14 66.6
Msa0934920 AT2G27940.1 33.577 137 67 4 1 116 50 183 3.29e-14 68.2
Msa0934920 AT5G66160.2 32.258 124 76 4 7 128 170 287 3.67e-14 68.6
Msa0934920 AT4G35840.1 37.333 75 44 1 44 115 159 233 3.83e-14 67.8
Msa0934920 AT2G18670.1 42.466 73 41 1 47 118 83 155 5.39e-14 66.6
Msa0934920 AT1G20823.1 39.241 79 47 1 41 118 78 156 1.29e-13 65.9
Msa0934920 AT1G71980.1 53.846 52 22 2 65 115 224 274 1.55e-13 67.4
Msa0934920 AT3G10910.1 42.647 68 39 0 48 115 89 156 1.66e-13 65.1
Msa0934920 AT1G76410.1 40.506 79 46 1 41 118 71 149 1.98e-13 65.1
Msa0934920 AT3G03550.1 33.663 101 62 1 53 148 139 239 2.00e-13 67.0
Msa0934920 AT5G17600.1 28.571 133 83 3 37 161 106 234 3.14e-13 66.6
Msa0934920 AT3G20395.1 39.437 71 41 2 45 115 145 213 4.76e-13 64.7
Msa0934920 AT5G05280.1 38.158 76 46 1 46 121 87 161 5.98e-13 63.5
Msa0934920 AT1G35330.1 38.961 77 44 1 43 116 96 172 6.77e-13 65.5
Msa0934920 AT2G44581.1 34.783 115 58 4 6 118 16 115 7.28e-13 62.8
Msa0934920 AT5G27420.1 29.655 145 96 3 9 148 56 199 7.29e-13 65.5
Msa0934920 AT3G18773.1 28.221 163 112 5 1 159 54 215 8.22e-13 63.9
Msa0934920 AT2G47560.1 37.333 75 45 1 46 118 79 153 9.74e-13 63.9
Msa0934920 AT2G42350.1 40.278 72 42 1 45 116 73 143 1.10e-12 63.5
Msa0934920 AT2G42360.1 40.000 75 44 1 45 118 79 153 1.12e-12 63.9
Msa0934920 AT2G44578.1 33.913 115 63 4 5 118 13 115 1.16e-12 62.4
Msa0934920 AT3G18930.2 45.614 57 31 0 62 118 145 201 1.17e-12 65.1
Msa0934920 AT3G18930.3 45.614 57 31 0 62 118 145 201 1.17e-12 65.1
Msa0934920 AT3G18930.1 45.614 57 31 0 62 118 145 201 1.17e-12 65.1
Msa0934920 AT4G17905.2 36.190 105 59 3 48 147 159 260 1.55e-12 64.3
Msa0934920 AT1G32361.1 41.270 63 35 1 53 115 136 196 1.66e-12 64.3
Msa0934920 AT1G49220.1 29.197 137 85 4 20 154 89 215 1.81e-12 63.5
Msa0934920 AT4G17905.1 36.190 105 59 3 48 147 133 234 2.03e-12 63.9
Msa0934920 AT2G35420.1 28.462 130 75 4 5 120 30 155 2.16e-12 63.5
Msa0934920 AT5G66070.5 46.667 45 24 0 71 115 174 218 2.64e-12 62.8
Msa0934920 AT5G66070.1 46.667 45 24 0 71 115 174 218 2.64e-12 62.8
Msa0934920 AT4G35480.1 40.000 65 36 1 54 118 97 158 2.98e-12 62.4
Msa0934920 AT1G14200.1 38.356 73 43 2 43 115 80 150 3.22e-12 61.6
Msa0934920 AT1G49210.1 29.808 104 71 2 46 148 107 209 4.30e-12 62.0
Msa0934920 AT1G49200.1 31.356 118 78 3 1 115 61 178 4.82e-12 62.0
Msa0934920 AT5G66070.2 46.667 45 24 0 71 115 198 242 4.97e-12 62.4
Msa0934920 AT3G60966.1 44.643 56 31 0 63 118 52 107 6.24e-12 60.1
Msa0934920 AT4G15975.1 41.667 48 28 0 71 118 74 121 7.14e-12 61.6
Msa0934920 AT1G72200.1 29.545 132 74 5 1 116 59 187 9.58e-12 62.4
Msa0934920 AT2G35000.1 40.541 74 41 1 46 116 105 178 1.50e-11 61.6
Msa0934920 AT1G49230.1 52.273 44 21 0 72 115 130 173 1.51e-11 60.5
Msa0934920 AT1G53010.1 39.623 53 32 0 64 116 121 173 2.09e-11 59.7
Msa0934920 AT2G46493.1 27.273 121 78 2 5 115 60 180 2.91e-11 59.3
Msa0934920 AT1G04360.1 31.193 109 65 3 46 144 100 208 3.41e-11 60.8
Msa0934920 AT2G17730.2 36.364 77 45 2 38 110 157 233 4.31e-11 59.7
Msa0934920 AT5G43420.1 36.047 86 50 2 72 152 137 222 4.52e-11 60.5
Msa0934920 AT4G33565.1 39.130 69 35 1 61 122 205 273 4.55e-11 60.5
Msa0934920 AT3G55530.1 43.396 53 29 1 63 115 201 252 4.78e-11 59.7
Msa0934920 AT2G25410.1 30.000 120 74 2 5 116 253 370 6.41e-11 60.1
Msa0934920 AT1G33480.1 32.500 120 67 5 5 115 28 142 9.11e-11 58.9

Find 29 sgRNAs with CRISPR-Local

Find 31 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTATGTTGCAAAAGAAAA+TGG 0.230340 6_3:-5181960 Msa0934920:CDS
TTGTCCAATTTGTAGATCTA+TGG 0.257672 6_3:-5181808 Msa0934920:CDS
GTTTGGAGAATTTCACTATT+GGG 0.290326 6_3:-5181911 Msa0934920:CDS
AGTGCAAACAAAGTTGTTAT+AGG 0.302873 6_3:-5181774 Msa0934920:CDS
GCTCTATTACTAATATTTGT+AGG 0.310118 6_3:-5182122 Msa0934920:CDS
CAGGAAAACATATACGAAAT+AGG 0.312839 6_3:+5182084 None:intergenic
TGTTTGGAGAATTTCACTAT+TGG 0.324990 6_3:-5181912 Msa0934920:CDS
TTTAGATTGTGCAATTTGTT+TGG 0.325499 6_3:-5181928 Msa0934920:CDS
ATTTGTAGGACTAGTGCTTT+TGG 0.332746 6_3:-5182108 Msa0934920:CDS
CCAACCATAGATCTACAAAT+TGG 0.357467 6_3:+5181804 None:intergenic
GAGCAACAACAATGGTTGAT+AGG 0.371915 6_3:-5182031 Msa0934920:CDS
AACAAATTGCACAATCTAAA+GGG 0.417519 6_3:+5181931 None:intergenic
AGATCTACAAATTGGACAAA+TGG 0.421145 6_3:+5181812 None:intergenic
ATGCTCAATGTGTGGATCAA+TGG 0.439509 6_3:-5181848 Msa0934920:CDS
TGTGATTCTACTTCAAATGT+TGG 0.442241 6_3:+5181681 None:intergenic
AAACAAATTGCACAATCTAA+AGG 0.442477 6_3:+5181930 None:intergenic
AAGCTTCTCTAACTCAACTT+TGG 0.450211 6_3:+5181992 None:intergenic
AGCAACAACAATGGTTGATA+GGG 0.465961 6_3:-5182030 Msa0934920:CDS
CCAATTTGTAGATCTATGGT+TGG 0.498208 6_3:-5181804 Msa0934920:CDS
TCTCTAACTCAACTTTGGAT+AGG 0.515749 6_3:+5181997 None:intergenic
TTTGGAGAATTTCACTATTG+GGG 0.528111 6_3:-5181910 Msa0934920:CDS
ATACTCATATAACTCTCAGC+AGG 0.552332 6_3:+5182065 None:intergenic
AGTTATATGAGTATGAGACT+AGG 0.564426 6_3:-5182056 Msa0934920:CDS
AAAGTTGTTATAGGTAACAA+TGG 0.569424 6_3:-5181765 Msa0934920:CDS
TGAAAATTGTGCTTGCAAGT+AGG 0.575339 6_3:+5181870 None:intergenic
GGAAGAGAAAGCATAGAAAG+TGG 0.597369 6_3:-5181744 Msa0934920:CDS
GCAACAACAATGGTTGATAG+GGG 0.635210 6_3:-5182029 Msa0934920:CDS
TTTGCAACATAATCATAACA+TGG 0.646690 6_3:+5181969 None:intergenic
ACTAGGAAGAGCAACAACAA+TGG 0.696545 6_3:-5182039 Msa0934920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! GCTCTATTACTAATATTTGT+AGG - chr6_3:5181686-5181705 Msa0934920:CDS 25.0%
! TTTGCAACATAATCATAACA+TGG + chr6_3:5181842-5181861 None:intergenic 25.0%
! GATTATGTTGCAAAAGAAAA+TGG - chr6_3:5181848-5181867 Msa0934920:CDS 25.0%
! AACAAATTGCACAATCTAAA+GGG + chr6_3:5181880-5181899 None:intergenic 25.0%
! AAACAAATTGCACAATCTAA+AGG + chr6_3:5181881-5181900 None:intergenic 25.0%
!! TTTAGATTGTGCAATTTGTT+TGG - chr6_3:5181880-5181899 Msa0934920:CDS 25.0%
! AAAGTTGTTATAGGTAACAA+TGG - chr6_3:5182043-5182062 Msa0934920:CDS 25.0%
CAGGAAAACATATACGAAAT+AGG + chr6_3:5181727-5181746 None:intergenic 30.0%
AGTTATATGAGTATGAGACT+AGG - chr6_3:5181752-5181771 Msa0934920:CDS 30.0%
TGTTTGGAGAATTTCACTAT+TGG - chr6_3:5181896-5181915 Msa0934920:CDS 30.0%
GTTTGGAGAATTTCACTATT+GGG - chr6_3:5181897-5181916 Msa0934920:CDS 30.0%
TTTGGAGAATTTCACTATTG+GGG - chr6_3:5181898-5181917 Msa0934920:CDS 30.0%
AGATCTACAAATTGGACAAA+TGG + chr6_3:5181999-5182018 None:intergenic 30.0%
TTGTCCAATTTGTAGATCTA+TGG - chr6_3:5182000-5182019 Msa0934920:CDS 30.0%
AGTGCAAACAAAGTTGTTAT+AGG - chr6_3:5182034-5182053 Msa0934920:CDS 30.0%
TGTGATTCTACTTCAAATGT+TGG + chr6_3:5182130-5182149 None:intergenic 30.0%
!! ATTTGTAGGACTAGTGCTTT+TGG - chr6_3:5181700-5181719 Msa0934920:CDS 35.0%
ATACTCATATAACTCTCAGC+AGG + chr6_3:5181746-5181765 None:intergenic 35.0%
! AGCAACAACAATGGTTGATA+GGG - chr6_3:5181778-5181797 Msa0934920:CDS 35.0%
TCTCTAACTCAACTTTGGAT+AGG + chr6_3:5181814-5181833 None:intergenic 35.0%
AAGCTTCTCTAACTCAACTT+TGG + chr6_3:5181819-5181838 None:intergenic 35.0%
TGAAAATTGTGCTTGCAAGT+AGG + chr6_3:5181941-5181960 None:intergenic 35.0%
! CAATTTTCATGCTCAATGTG+TGG - chr6_3:5181952-5181971 Msa0934920:CDS 35.0%
CCAACCATAGATCTACAAAT+TGG + chr6_3:5182007-5182026 None:intergenic 35.0%
CCAATTTGTAGATCTATGGT+TGG - chr6_3:5182004-5182023 Msa0934920:CDS 35.0%
ACTAGGAAGAGCAACAACAA+TGG - chr6_3:5181769-5181788 Msa0934920:CDS 40.0%
GAGCAACAACAATGGTTGAT+AGG - chr6_3:5181777-5181796 Msa0934920:CDS 40.0%
!! GCAACAACAATGGTTGATAG+GGG - chr6_3:5181779-5181798 Msa0934920:CDS 40.0%
ATGCTCAATGTGTGGATCAA+TGG - chr6_3:5181960-5181979 Msa0934920:CDS 40.0%
! GGAAGAGAAAGCATAGAAAG+TGG - chr6_3:5182064-5182083 Msa0934920:CDS 40.0%
! GTGTGGATCAATGGCTTTTG+AGG - chr6_3:5181969-5181988 Msa0934920:CDS 45.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 5181671 5182159 5181671 ID=Msa0934920;Name=Msa0934920
chr6_3 mRNA 5181671 5182159 5181671 ID=Msa0934920-mRNA-1;Parent=Msa0934920;Name=Msa0934920-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|162
chr6_3 exon 5181671 5182159 5181671 ID=Msa0934920-mRNA-1:exon:1587;Parent=Msa0934920-mRNA-1
chr6_3 CDS 5181671 5182159 5181671 ID=Msa0934920-mRNA-1:cds;Parent=Msa0934920-mRNA-1
Gene Sequence

>Msa0934920

ATGGAACTTACTATAGCTCTATTACTAATATTTGTAGGACTAGTGCTTTTGGTCCTATTTCGTATATGTTTTCCTGCTGAGAGTTATATGAGTATGAGACTAGGAAGAGCAACAACAATGGTTGATAGGGGAAGAAGAAGCCTATCCAAAGTTGAGTTAGAGAAGCTTCCATGTTATGATTATGTTGCAAAAGAAAATGGAAGTAACCCTTTAGATTGTGCAATTTGTTTGGAGAATTTCACTATTGGGGATAAATGTAGATTGTTACCTACTTGCAAGCACAATTTTCATGCTCAATGTGTGGATCAATGGCTTTTGAGGAATTCCATTTGTCCAATTTGTAGATCTATGGTTGGTTCTCATAGTGCAAACAAAGTTGTTATAGGTAACAATGGAAGAGAAAGCATAGAAAGTGGTTCATCTAGAAATGTTGTTATAGAATTAAGAGAAAATATTCCAACATTTGAAGTAGAATCACAAGAGCACTAA
Protein sequence

>Msa0934920

MELTIALLLIFVGLVLLVLFRICFPAESYMSMRLGRATTMVDRGRRSLSKVELEKLPCYDYVAKENGSNPLDCAICLENFTIGDKCRLLPTCKHNFHAQCVDQWLLRNSICPICRSMVGSHSANKVVIGNNGRESIESGSSRNVVIELRENIPTFEVESQEH*