Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936360 | XP_003589358.2 | 98.261 | 115 | 2 | 0 | 1 | 115 | 1 | 115 | 2.67e-78 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936360 | sp|Q6ID77|MED11_ARATH | 73.684 | 114 | 30 | 0 | 1 | 114 | 1 | 114 | 6.10e-60 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003130 | Msa0936360 | 0.816268 | 6.036422e-52 | -8.615850e-47 |
| Msa0003230 | Msa0936360 | 0.833240 | 5.973618e-56 | -8.615850e-47 |
| Msa0814780 | Msa0936360 | 0.819082 | 1.400135e-52 | -8.615850e-47 |
| Msa0412540 | Msa0936360 | 0.800981 | 1.116911e-48 | -8.615850e-47 |
| Msa0272420 | Msa0936360 | 0.805886 | 1.074751e-49 | -8.615850e-47 |
| Msa0936360 | Msa1081700 | 0.800712 | 1.267201e-48 | -8.615850e-47 |
| Msa0936360 | Msa1272070 | 0.823153 | 1.614732e-53 | -8.615850e-47 |
| Msa0936360 | Msa1386020 | 0.807351 | 5.274419e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936360 | MtrunA17_Chr1g0155861 | 98.261 | 115 | 2 | 0 | 1 | 115 | 1 | 115 | 2.46e-82 | 236 |
| Msa0936360 | MtrunA17_Chr8g0392451 | 97.391 | 115 | 3 | 0 | 1 | 115 | 1 | 115 | 7.81e-81 | 232 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936360 | AT3G01435.1 | 73.684 | 114 | 30 | 0 | 1 | 114 | 1 | 114 | 6.20e-61 | 182 |
| Msa0936360 | AT3G01435.4 | 73.684 | 114 | 30 | 0 | 1 | 114 | 1 | 114 | 6.20e-61 | 182 |
| Msa0936360 | AT3G01435.2 | 57.534 | 146 | 30 | 1 | 1 | 114 | 1 | 146 | 5.45e-54 | 166 |
| Msa0936360 | AT3G01435.3 | 70.238 | 84 | 25 | 0 | 31 | 114 | 1 | 84 | 6.96e-42 | 133 |
Find 39 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATTCAAGACAGTGATTT+TGG | 0.154549 | 6_3:-7024984 | None:intergenic |
| TCACAGTTCTTTGCAATTTC+AGG | 0.167918 | 6_3:+7022812 | Msa0936360:five_prime_UTR |
| CATATCTCATTTGCTATTCT+TGG | 0.183234 | 6_3:-7026718 | None:intergenic |
| AGAGAGAGCGATTTGTTCTT+AGG | 0.191630 | 6_3:-7022643 | None:intergenic |
| TGAAAATTCAGTCTGTAATT+TGG | 0.197049 | 6_3:+7026860 | Msa0936360:three_prime_UTR |
| TGAATTCATGCAATTAATTA+AGG | 0.202211 | 6_3:+7024999 | Msa0936360:CDS |
| CCATTTGAAAAGTGTGATTA+TGG | 0.272416 | 6_3:+7026694 | Msa0936360:CDS |
| ATAGAGAATTGTGAAGGTTT+TGG | 0.292105 | 6_3:+7024900 | Msa0936360:intron |
| GTTGTGTTGTGTGGTGTATA+TGG | 0.316982 | 6_3:-7022577 | None:intergenic |
| GTGCAACTTGAATTGCTTGC+AGG | 0.330825 | 6_3:-7026895 | None:intergenic |
| ATTTATTTCGAGGGGTCATT+TGG | 0.349026 | 6_3:+7026945 | Msa0936360:three_prime_UTR |
| AAAGACAGATTATGAAGTTA+TGG | 0.375086 | 6_3:+7027008 | Msa0936360:three_prime_UTR |
| ATGAAATTTATGGAGGGTTG+TGG | 0.390675 | 6_3:-7022737 | None:intergenic |
| AAATGAGATATGTTTCAAAA+AGG | 0.396887 | 6_3:+7026729 | Msa0936360:CDS |
| ATATCTCATTTGCTATTCTT+GGG | 0.398050 | 6_3:-7026717 | None:intergenic |
| CGAGTGAGAGATGAAATTTA+TGG | 0.403614 | 6_3:-7022747 | None:intergenic |
| GGAATATGTCATGTCACAAT+TGG | 0.423342 | 6_3:+7026753 | Msa0936360:CDS |
| AGCAACATCAATGGATTCAC+AGG | 0.432506 | 6_3:+7024716 | Msa0936360:exon |
| GAGAGAGCGATTTGTTCTTA+GGG | 0.433712 | 6_3:-7022642 | None:intergenic |
| TTTATTTCGAGGGGTCATTT+GGG | 0.435975 | 6_3:+7026946 | Msa0936360:three_prime_UTR |
| TGAAATTTATGGAGGGTTGT+GGG | 0.436372 | 6_3:-7022736 | None:intergenic |
| GTCTTTGCAATGAAGTTGTC+TGG | 0.456591 | 6_3:-7024740 | None:intergenic |
| TTGTTTATGTATTTATTTCG+AGG | 0.463556 | 6_3:+7026935 | Msa0936360:three_prime_UTR |
| TTTCATCACGCAACGCCACT+TGG | 0.479312 | 6_3:-7026648 | None:intergenic |
| TGTTTATGTATTTATTTCGA+GGG | 0.498072 | 6_3:+7026936 | Msa0936360:three_prime_UTR |
| CACAGAGAAAGCAACATCAA+TGG | 0.506024 | 6_3:+7024707 | Msa0936360:exon |
| ATGTCTTTAATCTCAAACAT+AGG | 0.521066 | 6_3:-7027079 | None:intergenic |
| GTGAGAGATGAAATTTATGG+AGG | 0.521544 | 6_3:-7022744 | None:intergenic |
| TGCAACTTGAATTGCTTGCA+GGG | 0.527566 | 6_3:-7026894 | None:intergenic |
| GACGAGCTTGCAAGCCCAGT+TGG | 0.535324 | 6_3:+7024943 | Msa0936360:CDS |
| AAGACTTCAGAATGTCGAAA+AGG | 0.556491 | 6_3:+7024758 | Msa0936360:CDS |
| TTATAGATGGTTGTGTTGTG+TGG | 0.557586 | 6_3:-7022586 | None:intergenic |
| GGAGCTTGCAGGAGGAGTGA+TGG | 0.557814 | 6_3:+7024921 | Msa0936360:CDS |
| GCTTTGAGTGAGCGATTGAA+AGG | 0.563751 | 6_3:-7022680 | None:intergenic |
| TGAGAGATGAAATTTATGGA+GGG | 0.567496 | 6_3:-7022743 | None:intergenic |
| AATTCAAGTTGCACTCAACA+AGG | 0.612180 | 6_3:+7026904 | Msa0936360:three_prime_UTR |
| GTTTATGTATTTATTTCGAG+GGG | 0.634189 | 6_3:+7026937 | Msa0936360:three_prime_UTR |
| GTTTGTATAGAGAATTGTGA+AGG | 0.675616 | 6_3:+7024894 | Msa0936360:intron |
| GCAACATCAATGGATTCACA+GGG | 0.701218 | 6_3:+7024717 | Msa0936360:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTGTTATAGA+TGG | - | chr6_3:7022602-7022621 | None:intergenic | 10.0% |
| !! | ATATTAAAGTATATTAAAGA+AGG | + | chr6_3:7023988-7024007 | Msa0936360:intron | 10.0% |
| !! | TATGATATTAATTATTGAAA+TGG | - | chr6_3:7025103-7025122 | None:intergenic | 10.0% |
| !!! | ATTTTTTGATTTTGATGAAA+TGG | + | chr6_3:7022921-7022940 | Msa0936360:intron | 15.0% |
| !!! | TTTTTTGATTTTGATGAAAT+GGG | + | chr6_3:7022922-7022941 | Msa0936360:intron | 15.0% |
| !!! | TTTGTTGAAATTTTGATTTT+TGG | + | chr6_3:7022945-7022964 | Msa0936360:intron | 15.0% |
| !!! | TACAACATTTTTTTTATGAA+GGG | + | chr6_3:7023195-7023214 | Msa0936360:intron | 15.0% |
| !! | ATGAATAAGTGTTTATAAAT+GGG | - | chr6_3:7025403-7025422 | None:intergenic | 15.0% |
| !!! | TGATTTTCAATTACAATTAA+CGG | + | chr6_3:7025810-7025829 | Msa0936360:intron | 15.0% |
| !! | TTCATTTCATATCTTTAATT+TGG | - | chr6_3:7026245-7026264 | None:intergenic | 15.0% |
| !!! | AAACTATTTTTGATAGAAAT+GGG | - | chr6_3:7026270-7026289 | None:intergenic | 15.0% |
| !!! | TAAACTATTTTTGATAGAAA+TGG | - | chr6_3:7026271-7026290 | None:intergenic | 15.0% |
| !! | AATATTACAACATTATAGTA+GGG | - | chr6_3:7026572-7026591 | None:intergenic | 15.0% |
| !! | AAAAATTAGAAAGAAAATGA+AGG | - | chr6_3:7026619-7026638 | None:intergenic | 15.0% |
| !!! | ATTTTCTTTCTAATTTTTGT+AGG | + | chr6_3:7026621-7026640 | Msa0936360:intron | 15.0% |
| !!! | TAATTTCAAGCATTTTTTTG+TGG | - | chr6_3:7023119-7023138 | None:intergenic | 20.0% |
| !!! | GTACAACATTTTTTTTATGA+AGG | + | chr6_3:7023194-7023213 | Msa0936360:intron | 20.0% |
| !!! | GTATTTTTGTTTTCATGTAA+AGG | + | chr6_3:7023308-7023327 | Msa0936360:intron | 20.0% |
| !! | CTTCAATTTATAATCCAAAA+GGG | - | chr6_3:7023356-7023375 | None:intergenic | 20.0% |
| !! | ACTTCAATTTATAATCCAAA+AGG | - | chr6_3:7023357-7023376 | None:intergenic | 20.0% |
| !!! | ACATTTTAGCTTAAAATTAG+TGG | - | chr6_3:7023440-7023459 | None:intergenic | 20.0% |
| !! | ATATCATTGCATTTATTTGT+TGG | - | chr6_3:7023492-7023511 | None:intergenic | 20.0% |
| !!! | TGTTTTTTATCAGAAACAAT+TGG | + | chr6_3:7023606-7023625 | Msa0936360:intron | 20.0% |
| !! | TTAGTAATATTCATATCTAG+TGG | - | chr6_3:7023686-7023705 | None:intergenic | 20.0% |
| !! | ATAATAATATAATGTACCGT+TGG | - | chr6_3:7024023-7024042 | None:intergenic | 20.0% |
| !! | AAAAAAGAAATCAACAGAAT+GGG | - | chr6_3:7024153-7024172 | None:intergenic | 20.0% |
| !! | TAAAAAAGAAATCAACAGAA+TGG | - | chr6_3:7024154-7024173 | None:intergenic | 20.0% |
| !!! | ATTCTGTTGATTTCTTTTTT+AGG | + | chr6_3:7024153-7024172 | Msa0936360:intron | 20.0% |
| !! | TACTTGATAAAAATCTTACA+CGG | - | chr6_3:7024337-7024356 | None:intergenic | 20.0% |
| !! | AAAAAAAAATCAAGTGTGAA+AGG | - | chr6_3:7024826-7024845 | None:intergenic | 20.0% |
| !! | TGAATTCATGCAATTAATTA+AGG | + | chr6_3:7024999-7025018 | Msa0936360:CDS | 20.0% |
| !! | TATATAACTATAGATTCAAG+TGG | + | chr6_3:7025075-7025094 | Msa0936360:intron | 20.0% |
| !! | TGAATAAGTGTTTATAAATG+GGG | - | chr6_3:7025402-7025421 | None:intergenic | 20.0% |
| !! | CATGAATAAGTGTTTATAAA+TGG | - | chr6_3:7025404-7025423 | None:intergenic | 20.0% |
| !! | TTCAATATATAAACTATGCT+TGG | + | chr6_3:7025452-7025471 | Msa0936360:intron | 20.0% |
| !! | TATATTGCATACAAATGAAA+GGG | - | chr6_3:7025512-7025531 | None:intergenic | 20.0% |
| !! | TGTTATATCAAGTTAAAAAG+AGG | - | chr6_3:7025853-7025872 | None:intergenic | 20.0% |
| !! | ACTCAATTACACAAATTTAA+AGG | - | chr6_3:7025903-7025922 | None:intergenic | 20.0% |
| !! | GAATATTACAACATTATAGT+AGG | - | chr6_3:7026573-7026592 | None:intergenic | 20.0% |
| !! | AAATGAGATATGTTTCAAAA+AGG | + | chr6_3:7026729-7026748 | Msa0936360:CDS | 20.0% |
| !!! | ATTTAAGAAGCAAAATTTTC+AGG | - | chr6_3:7026818-7026837 | None:intergenic | 20.0% |
| !! | TTGTTTATGTATTTATTTCG+AGG | + | chr6_3:7026935-7026954 | Msa0936360:three_prime_UTR | 20.0% |
| !! | TGTTTATGTATTTATTTCGA+GGG | + | chr6_3:7026936-7026955 | Msa0936360:three_prime_UTR | 20.0% |
| !! | TGCATTTTCTGTCAAATTAA+AGG | - | chr6_3:7023007-7023026 | None:intergenic | 25.0% |
| ! | CTATTAACTTATACTCGATA+TGG | + | chr6_3:7023033-7023052 | Msa0936360:intron | 25.0% |
| ! | ATATGGATTTGAATGTTTGA+GGG | + | chr6_3:7023050-7023069 | Msa0936360:intron | 25.0% |
| !! | TAATACTGGTGTATGATTTT+AGG | + | chr6_3:7023257-7023276 | Msa0936360:intron | 25.0% |
| !! | TTTAAAACTTTATGGCAAAC+AGG | - | chr6_3:7023392-7023411 | None:intergenic | 25.0% |
| !! | CATGTGCATTTAAAACTTTA+TGG | - | chr6_3:7023400-7023419 | None:intergenic | 25.0% |
| ! | GAAACAATTGGAATGAATAT+TGG | + | chr6_3:7023618-7023637 | Msa0936360:intron | 25.0% |
| !! | CTAGTAGAAGATATTGATTA+AGG | + | chr6_3:7023709-7023728 | Msa0936360:intron | 25.0% |
| ! | ATTGTTATAGCATACTACAT+TGG | + | chr6_3:7023886-7023905 | Msa0936360:intron | 25.0% |
| !! | ATTGGCAGTACAAATTATTT+TGG | + | chr6_3:7023904-7023923 | Msa0936360:intron | 25.0% |
| !!! | TAAGCTATTTTGTAGTCAAT+CGG | + | chr6_3:7024178-7024197 | Msa0936360:intron | 25.0% |
| !! | ATTTCCCTTTTTGTAAAATG+TGG | + | chr6_3:7024252-7024271 | Msa0936360:intron | 25.0% |
| !! | TTTTCTAAGCAGTAAACTAA+TGG | - | chr6_3:7024459-7024478 | None:intergenic | 25.0% |
| ! | AATCTTGCCAAAATATTGTA+GGG | - | chr6_3:7024622-7024641 | None:intergenic | 25.0% |
| ! | TAATCTTGCCAAAATATTGT+AGG | - | chr6_3:7024623-7024642 | None:intergenic | 25.0% |
| !! | TTTTTATTACAAGATTGCAC+TGG | + | chr6_3:7025052-7025071 | Msa0936360:intron | 25.0% |
| !! | TAGTTGTTGCACAATAATTT+TGG | - | chr6_3:7025138-7025157 | None:intergenic | 25.0% |
| ! | AATTATTGTGCAACAACTAT+TGG | + | chr6_3:7025139-7025158 | Msa0936360:intron | 25.0% |
| ! | GAATAAGTGTTTATAAATGG+GGG | - | chr6_3:7025401-7025420 | None:intergenic | 25.0% |
| ! | GTATATTGCATACAAATGAA+AGG | - | chr6_3:7025513-7025532 | None:intergenic | 25.0% |
| !!! | CTATTTCACATAACTGATTT+TGG | + | chr6_3:7025605-7025624 | Msa0936360:intron | 25.0% |
| ! | AAGTTAAAAAGAGGATAAAG+CGG | - | chr6_3:7025844-7025863 | None:intergenic | 25.0% |
| ! | GACTATTAGCACTTAAAAAA+TGG | + | chr6_3:7025932-7025951 | Msa0936360:intron | 25.0% |
| ! | TTCAAATACCAAACTTACAA+AGG | - | chr6_3:7026066-7026085 | None:intergenic | 25.0% |
| ! | TAATGAACATTAGATTTGTC+AGG | - | chr6_3:7026090-7026109 | None:intergenic | 25.0% |
| ! | CTATCAAAAATAGTTTACCT+TGG | + | chr6_3:7026274-7026293 | Msa0936360:intron | 25.0% |
| ! | AAACAACTAAGTACATGTTT+GGG | + | chr6_3:7026301-7026320 | Msa0936360:intron | 25.0% |
| ! | TATATACTCCAATAACTAAC+AGG | - | chr6_3:7026442-7026461 | None:intergenic | 25.0% |
| !!! | ATATCTCATTTGCTATTCTT+GGG | - | chr6_3:7026720-7026739 | None:intergenic | 25.0% |
| ! | TGAAAATTCAGTCTGTAATT+TGG | + | chr6_3:7026860-7026879 | Msa0936360:three_prime_UTR | 25.0% |
| ! | GTTTATGTATTTATTTCGAG+GGG | + | chr6_3:7026937-7026956 | Msa0936360:three_prime_UTR | 25.0% |
| !! | TAATCTGTCTTTTACATGTT+TGG | - | chr6_3:7027000-7027019 | None:intergenic | 25.0% |
| ! | AAAGACAGATTATGAAGTTA+TGG | + | chr6_3:7027008-7027027 | Msa0936360:three_prime_UTR | 25.0% |
| TGAGAGATGAAATTTATGGA+GGG | - | chr6_3:7022746-7022765 | None:intergenic | 30.0% | |
| AGAGAATATCACCTATATTG+AGG | - | chr6_3:7022869-7022888 | None:intergenic | 30.0% | |
| !! | AGAGTTTGTGTTTTTGTTTC+TGG | + | chr6_3:7022972-7022991 | Msa0936360:intron | 30.0% |
| GATATGGATTTGAATGTTTG+AGG | + | chr6_3:7023049-7023068 | Msa0936360:intron | 30.0% | |
| ! | GAGTAGTTTGAAATCAATGA+GGG | + | chr6_3:7023217-7023236 | Msa0936360:intron | 30.0% |
| ATTAAGATACAGTAGTGAGA+GGG | + | chr6_3:7023515-7023534 | Msa0936360:intron | 30.0% | |
| TAGGTAGTGTTTAGATAATG+CGG | + | chr6_3:7023755-7023774 | Msa0936360:intron | 30.0% | |
| TACATTGTAACTGATACCTA+AGG | - | chr6_3:7023824-7023843 | None:intergenic | 30.0% | |
| TTAGGTATCAGTTACAATGT+AGG | + | chr6_3:7023823-7023842 | Msa0936360:intron | 30.0% | |
| CAATAATAAAGCTTTGCAAG+TGG | - | chr6_3:7023870-7023889 | None:intergenic | 30.0% | |
| ! | ACTAGAAATTGATTCCAACT+TGG | + | chr6_3:7024074-7024093 | Msa0936360:intron | 30.0% |
| ATAAACATAGAATGCCAAGT+TGG | - | chr6_3:7024091-7024110 | None:intergenic | 30.0% | |
| ATTCTATGTTTATCCCGATT+TGG | + | chr6_3:7024098-7024117 | Msa0936360:intron | 30.0% | |
| TTCTATGTTTATCCCGATTT+GGG | + | chr6_3:7024099-7024118 | Msa0936360:intron | 30.0% | |
| ! | TTTTGTAGTCAATCGGATAT+CGG | + | chr6_3:7024185-7024204 | Msa0936360:intron | 30.0% |
| ! | TCAGCCACATTTTACAAAAA+GGG | - | chr6_3:7024259-7024278 | None:intergenic | 30.0% |
| ! | ATCAGCCACATTTTACAAAA+AGG | - | chr6_3:7024260-7024279 | None:intergenic | 30.0% |
| TTGATAAAAATCTTACACGG+CGG | - | chr6_3:7024334-7024353 | None:intergenic | 30.0% | |
| ! | AACTAATGGTGTGTTTGTTT+TGG | - | chr6_3:7024445-7024464 | None:intergenic | 30.0% |
| GTTTGTATAGAGAATTGTGA+AGG | + | chr6_3:7024894-7024913 | Msa0936360:intron | 30.0% | |
| ! | ATAGAGAATTGTGAAGGTTT+TGG | + | chr6_3:7024900-7024919 | Msa0936360:intron | 30.0% |
| ! | TTTTGGACAAGATCTTTTCT+AGG | - | chr6_3:7024970-7024989 | None:intergenic | 30.0% |
| ! | TGAATTCAAGACAGTGATTT+TGG | - | chr6_3:7024987-7025006 | None:intergenic | 30.0% |
| AATTATTGAGAGACAAAGCA+AGG | - | chr6_3:7025029-7025048 | None:intergenic | 30.0% | |
| CTAACTCATCCTTACAAAAT+CGG | - | chr6_3:7025343-7025362 | None:intergenic | 30.0% | |
| ATTGAAATGTCTACGTACAT+CGG | - | chr6_3:7025438-7025457 | None:intergenic | 30.0% | |
| CATACAAATGAAAGGGTTAT+GGG | - | chr6_3:7025505-7025524 | None:intergenic | 30.0% | |
| TGAAATAGCAAATACTGTCA+CGG | - | chr6_3:7025593-7025612 | None:intergenic | 30.0% | |
| ATGTAATCAATAGCAGATTG+CGG | - | chr6_3:7025642-7025661 | None:intergenic | 30.0% | |
| AACAGATAGAATTGTGATCA+AGG | - | chr6_3:7025791-7025810 | None:intergenic | 30.0% | |
| TATCACAACCAAACTTACAA+AGG | - | chr6_3:7026035-7026054 | None:intergenic | 30.0% | |
| AAACAACACTAGTTATGTGA+TGG | + | chr6_3:7026189-7026208 | Msa0936360:intron | 30.0% | |
| CAAACATGTACTTAGTTGTT+TGG | - | chr6_3:7026302-7026321 | None:intergenic | 30.0% | |
| CAAACAACTAAGTACATGTT+TGG | + | chr6_3:7026300-7026319 | Msa0936360:intron | 30.0% | |
| TAAGTACATGTTTGGGTAAT+TGG | + | chr6_3:7026308-7026327 | Msa0936360:intron | 30.0% | |
| AACACAAACAATTCTTCTAG+AGG | - | chr6_3:7026381-7026400 | None:intergenic | 30.0% | |
| ACTAAACCTGTTAGCAATTA+GGG | - | chr6_3:7026502-7026521 | None:intergenic | 30.0% | |
| AACTAAACCTGTTAGCAATT+AGG | - | chr6_3:7026503-7026522 | None:intergenic | 30.0% | |
| CTAACAGGTTTAGTTATTCA+GGG | + | chr6_3:7026508-7026527 | Msa0936360:intron | 30.0% | |
| ! | CCATAATCACACTTTTCAAA+TGG | - | chr6_3:7026697-7026716 | None:intergenic | 30.0% |
| ! | CCATTTGAAAAGTGTGATTA+TGG | + | chr6_3:7026694-7026713 | Msa0936360:CDS | 30.0% |
| !! | CATATCTCATTTGCTATTCT+TGG | - | chr6_3:7026721-7026740 | None:intergenic | 30.0% |
| TGAGATATGTTTCAAAAAGG+TGG | + | chr6_3:7026732-7026751 | Msa0936360:CDS | 30.0% | |
| TTATAGATGGTTGTGTTGTG+TGG | - | chr6_3:7022589-7022608 | None:intergenic | 35.0% | |
| TGAAATTTATGGAGGGTTGT+GGG | - | chr6_3:7022739-7022758 | None:intergenic | 35.0% | |
| ATGAAATTTATGGAGGGTTG+TGG | - | chr6_3:7022740-7022759 | None:intergenic | 35.0% | |
| GTGAGAGATGAAATTTATGG+AGG | - | chr6_3:7022747-7022766 | None:intergenic | 35.0% | |
| CGAGTGAGAGATGAAATTTA+TGG | - | chr6_3:7022750-7022769 | None:intergenic | 35.0% | |
| TCACAGTTCTTTGCAATTTC+AGG | + | chr6_3:7022812-7022831 | Msa0936360:five_prime_UTR | 35.0% | |
| !! | GTTCTTTGCAATTTCAGGTT+TGG | + | chr6_3:7022817-7022836 | Msa0936360:intron | 35.0% |
| TCAGCTTCATTCCTCAATAT+AGG | + | chr6_3:7022855-7022874 | Msa0936360:intron | 35.0% | |
| ! | GGAGTAGTTTGAAATCAATG+AGG | + | chr6_3:7023216-7023235 | Msa0936360:intron | 35.0% |
| AAAGGATGCATATAATGCCT+TGG | + | chr6_3:7023326-7023345 | Msa0936360:intron | 35.0% | |
| GATTAAGATACAGTAGTGAG+AGG | + | chr6_3:7023514-7023533 | Msa0936360:intron | 35.0% | |
| TTAAGATACAGTAGTGAGAG+GGG | + | chr6_3:7023516-7023535 | Msa0936360:intron | 35.0% | |
| AAAACATCACTACTGTGTGT+TGG | - | chr6_3:7023592-7023611 | None:intergenic | 35.0% | |
| TTGTTGCAATTTGTGCAACT+AGG | + | chr6_3:7023736-7023755 | Msa0936360:intron | 35.0% | |
| AGGTAGTGTTTAGATAATGC+GGG | + | chr6_3:7023756-7023775 | Msa0936360:intron | 35.0% | |
| ! | CCTAAGGTTTTTCATTGTGT+CGG | - | chr6_3:7023808-7023827 | None:intergenic | 35.0% |
| ! | TGTCTAGAGTCTAGAATTCT+CGG | + | chr6_3:7024216-7024235 | Msa0936360:intron | 35.0% |
| AAGACTTCAGAATGTCGAAA+AGG | + | chr6_3:7024758-7024777 | Msa0936360:CDS | 35.0% | |
| TTCATTGTGTTGGGTTTGAA+GGG | + | chr6_3:7025241-7025260 | Msa0936360:intron | 35.0% | |
| TCATATCTCTAAGTGATGTG+GGG | - | chr6_3:7025279-7025298 | None:intergenic | 35.0% | |
| GTCATATCTCTAAGTGATGT+GGG | - | chr6_3:7025280-7025299 | None:intergenic | 35.0% | |
| CCAATGCTTTATAAACACAC+AGG | - | chr6_3:7025302-7025321 | None:intergenic | 35.0% | |
| CCTGTGTGTTTATAAAGCAT+TGG | + | chr6_3:7025299-7025318 | Msa0936360:intron | 35.0% | |
| ! | CGATTTTGTAAGGATGAGTT+AGG | + | chr6_3:7025341-7025360 | Msa0936360:intron | 35.0% |
| ATGGGAATCACCACAAAAAA+GGG | - | chr6_3:7025487-7025506 | None:intergenic | 35.0% | |
| TATGGGAATCACCACAAAAA+AGG | - | chr6_3:7025488-7025507 | None:intergenic | 35.0% | |
| GCATACAAATGAAAGGGTTA+TGG | - | chr6_3:7025506-7025525 | None:intergenic | 35.0% | |
| GAAATAGCAAATACTGTCAC+GGG | - | chr6_3:7025592-7025611 | None:intergenic | 35.0% | |
| ! | AAAATTGTCCTGTTTCTCCA+TGG | + | chr6_3:7025964-7025983 | Msa0936360:intron | 35.0% |
| AAGCATGAAAATACACACCA+TGG | - | chr6_3:7025984-7026003 | None:intergenic | 35.0% | |
| AACACACTCCTTTGTAAGTT+TGG | + | chr6_3:7026024-7026043 | Msa0936360:intron | 35.0% | |
| AACACACTCCTTTGTAAGTT+TGG | + | chr6_3:7026024-7026043 | Msa0936360:intron | 35.0% | |
| TACTTAGTTGTTTGGATCCA+AGG | - | chr6_3:7026294-7026313 | None:intergenic | 35.0% | |
| TAATTGGTGCAAACTACAGA+GGG | + | chr6_3:7026324-7026343 | Msa0936360:intron | 35.0% | |
| TCTTCTGAGTGCATTGTATT+TGG | + | chr6_3:7026347-7026366 | Msa0936360:intron | 35.0% | |
| AGTTCTGTCCTGTTAGTTAT+TGG | + | chr6_3:7026431-7026450 | Msa0936360:intron | 35.0% | |
| GCTAACAGGTTTAGTTATTC+AGG | + | chr6_3:7026507-7026526 | Msa0936360:intron | 35.0% | |
| ! | ATTTTTGTAGGACATCCAAG+TGG | + | chr6_3:7026633-7026652 | Msa0936360:intron | 35.0% |
| GGAATATGTCATGTCACAAT+TGG | + | chr6_3:7026753-7026772 | Msa0936360:CDS | 35.0% | |
| !! | AATTCAAGTTGCACTCAACA+AGG | + | chr6_3:7026904-7026923 | Msa0936360:three_prime_UTR | 35.0% |
| ATTTATTTCGAGGGGTCATT+TGG | + | chr6_3:7026945-7026964 | Msa0936360:three_prime_UTR | 35.0% | |
| TTTATTTCGAGGGGTCATTT+GGG | + | chr6_3:7026946-7026965 | Msa0936360:three_prime_UTR | 35.0% | |
| ! | GAGAGAGCGATTTGTTCTTA+GGG | - | chr6_3:7022645-7022664 | None:intergenic | 40.0% |
| ! | AGAGAGAGCGATTTGTTCTT+AGG | - | chr6_3:7022646-7022665 | None:intergenic | 40.0% |
| GGAATGAAGCTGAGAAAGAA+AGG | - | chr6_3:7022848-7022867 | None:intergenic | 40.0% | |
| GAATGTTTGAGGGAAGAAAG+AGG | + | chr6_3:7023060-7023079 | Msa0936360:intron | 40.0% | |
| CAACATCCAAAGCGTAATAC+TGG | + | chr6_3:7023243-7023262 | Msa0936360:intron | 40.0% | |
| CATACACCAGTATTACGCTT+TGG | - | chr6_3:7023252-7023271 | None:intergenic | 40.0% | |
| TAATCCAAAAGGGACAACCA+AGG | - | chr6_3:7023346-7023365 | None:intergenic | 40.0% | |
| ACACAGTGTGAACCTGATAT+AGG | + | chr6_3:7023654-7023673 | Msa0936360:intron | 40.0% | |
| CACAGTGTGAACCTGATATA+GGG | + | chr6_3:7023655-7023674 | Msa0936360:intron | 40.0% | |
| TAGTGGCATTACCCTATATC+AGG | - | chr6_3:7023669-7023688 | None:intergenic | 40.0% | |
| GGTAGTGTTTAGATAATGCG+GGG | + | chr6_3:7023757-7023776 | Msa0936360:intron | 40.0% | |
| CCGACACAATGAAAAACCTT+AGG | + | chr6_3:7023805-7023824 | Msa0936360:intron | 40.0% | |
| GTATCAGTTACAATGTAGGC+AGG | + | chr6_3:7023827-7023846 | Msa0936360:intron | 40.0% | |
| CGTGTTGCGTAAAGATTGAT+TGG | + | chr6_3:7024486-7024505 | Msa0936360:intron | 40.0% | |
| ! | TACCGCTCCCTACAATATTT+TGG | + | chr6_3:7024612-7024631 | Msa0936360:intron | 40.0% |
| TGCCAAAATATTGTAGGGAG+CGG | - | chr6_3:7024617-7024636 | None:intergenic | 40.0% | |
| CACAGAGAAAGCAACATCAA+TGG | + | chr6_3:7024707-7024726 | Msa0936360:exon | 40.0% | |
| ! | AGCAACATCAATGGATTCAC+AGG | + | chr6_3:7024716-7024735 | Msa0936360:exon | 40.0% |
| ! | GCAACATCAATGGATTCACA+GGG | + | chr6_3:7024717-7024736 | Msa0936360:exon | 40.0% |
| GTCTTTGCAATGAAGTTGTC+TGG | - | chr6_3:7024743-7024762 | None:intergenic | 40.0% | |
| !!! | GATCTTTTCTAGGACCAACT+GGG | - | chr6_3:7024960-7024979 | None:intergenic | 40.0% |
| !!! | AGATCTTTTCTAGGACCAAC+TGG | - | chr6_3:7024961-7024980 | None:intergenic | 40.0% |
| GAAACCCAATGGACACAATT+AGG | - | chr6_3:7025199-7025218 | None:intergenic | 40.0% | |
| !! | AACACAATGAAGGTGTTGGA+GGG | - | chr6_3:7025232-7025251 | None:intergenic | 40.0% |
| TCCAACACCTTCATTGTGTT+GGG | + | chr6_3:7025232-7025251 | Msa0936360:intron | 40.0% | |
| CTTCAAACCCAACACAATGA+AGG | - | chr6_3:7025242-7025261 | None:intergenic | 40.0% | |
| CTTCATTGTGTTGGGTTTGA+AGG | + | chr6_3:7025240-7025259 | Msa0936360:intron | 40.0% | |
| TCATTGTGTTGGGTTTGAAG+GGG | + | chr6_3:7025242-7025261 | Msa0936360:intron | 40.0% | |
| CATATCTCTAAGTGATGTGG+GGG | - | chr6_3:7025278-7025297 | None:intergenic | 40.0% | |
| GGTCATATCTCTAAGTGATG+TGG | - | chr6_3:7025281-7025300 | None:intergenic | 40.0% | |
| !! | AAAATCGGCTTGTAAGGTGA+GGG | - | chr6_3:7025328-7025347 | None:intergenic | 40.0% |
| !! | CCTTACAAAATCGGCTTGTA+AGG | - | chr6_3:7025334-7025353 | None:intergenic | 40.0% |
| !! | CCTTACAAGCCGATTTTGTA+AGG | + | chr6_3:7025331-7025350 | Msa0936360:intron | 40.0% |
| ATCACCACAAAAAAGGGGAA+TGG | - | chr6_3:7025481-7025500 | None:intergenic | 40.0% | |
| TGGGAATCACCACAAAAAAG+GGG | - | chr6_3:7025486-7025505 | None:intergenic | 40.0% | |
| CAAATACTGTCACGGGAAAA+TGG | - | chr6_3:7025585-7025604 | None:intergenic | 40.0% | |
| AACACGATCTTGATCAGAGT+AGG | + | chr6_3:7025711-7025730 | Msa0936360:intron | 40.0% | |
| AATACACACCATGGAGAAAC+AGG | - | chr6_3:7025975-7025994 | None:intergenic | 40.0% | |
| TGGCACATTCAATCTGTCTT+GGG | - | chr6_3:7026158-7026177 | None:intergenic | 40.0% | |
| GTAATTGGTGCAAACTACAG+AGG | + | chr6_3:7026323-7026342 | Msa0936360:intron | 40.0% | |
| TTGGAGTATATACGTGTGTG+TGG | + | chr6_3:7026450-7026469 | Msa0936360:intron | 40.0% | |
| GTTTCTCCCTAATTGCTAAC+AGG | + | chr6_3:7026493-7026512 | Msa0936360:intron | 40.0% | |
| TGCAACTTGAATTGCTTGCA+GGG | - | chr6_3:7026897-7026916 | None:intergenic | 40.0% | |
| ! | GCTTTGAGTGAGCGATTGAA+AGG | - | chr6_3:7022683-7022702 | None:intergenic | 45.0% |
| ! | CTGGTGTATGATTTTAGGCG+TGG | + | chr6_3:7023262-7023281 | Msa0936360:intron | 45.0% |
| ! | AATGCCTTGGTTGTCCCTTT+TGG | + | chr6_3:7023339-7023358 | Msa0936360:intron | 45.0% |
| CGGGGAAGATTAGTAAGCTA+AGG | + | chr6_3:7023775-7023794 | Msa0936360:intron | 45.0% | |
| TTACAATGTAGGCAGGCAAG+TGG | + | chr6_3:7023834-7023853 | Msa0936360:intron | 45.0% | |
| TACAATGTAGGCAGGCAAGT+GGG | + | chr6_3:7023835-7023854 | Msa0936360:intron | 45.0% | |
| TTACCGACACCCGAGTAATT+TGG | + | chr6_3:7023928-7023947 | Msa0936360:intron | 45.0% | |
| ACTGCGTCTGCCAAATTACT+CGG | - | chr6_3:7023941-7023960 | None:intergenic | 45.0% | |
| ! | AAGAAGGCATGTGATGCCAA+CGG | + | chr6_3:7024004-7024023 | Msa0936360:intron | 45.0% |
| TCACAGTGAGTTCCCAAATC+GGG | - | chr6_3:7024114-7024133 | None:intergenic | 45.0% | |
| CTCACAGTGAGTTCCCAAAT+CGG | - | chr6_3:7024115-7024134 | None:intergenic | 45.0% | |
| TCTGCATAATCCAACTTGCG+CGG | + | chr6_3:7024544-7024563 | Msa0936360:intron | 45.0% | |
| AGTCGCCTAATTGTGTCCAT+TGG | + | chr6_3:7025191-7025210 | Msa0936360:intron | 45.0% | |
| GTCGCCTAATTGTGTCCATT+GGG | + | chr6_3:7025192-7025211 | Msa0936360:intron | 45.0% | |
| GTGCAATGAAGGAAACCCAA+TGG | - | chr6_3:7025210-7025229 | None:intergenic | 45.0% | |
| !! | CAACACAATGAAGGTGTTGG+AGG | - | chr6_3:7025233-7025252 | None:intergenic | 45.0% |
| CTCCAACACCTTCATTGTGT+TGG | + | chr6_3:7025231-7025250 | Msa0936360:intron | 45.0% | |
| ! | ACCCAACACAATGAAGGTGT+TGG | - | chr6_3:7025236-7025255 | None:intergenic | 45.0% |
| !! | CAAAATCGGCTTGTAAGGTG+AGG | - | chr6_3:7025329-7025348 | None:intergenic | 45.0% |
| AGTTAGGCCCCGATATAAAC+CGG | + | chr6_3:7025357-7025376 | Msa0936360:intron | 45.0% | |
| ! | TCACAAGCCGGTTTATATCG+GGG | - | chr6_3:7025367-7025386 | None:intergenic | 45.0% |
| ! | CTCACAAGCCGGTTTATATC+GGG | - | chr6_3:7025368-7025387 | None:intergenic | 45.0% |
| ! | CCTCACAAGCCGGTTTATAT+CGG | - | chr6_3:7025369-7025388 | None:intergenic | 45.0% |
| ! | TACGTACATCGGTTGAGAGA+TGG | - | chr6_3:7025427-7025446 | None:intergenic | 45.0% |
| ACCACAAAAAAGGGGAATGG+AGG | - | chr6_3:7025478-7025497 | None:intergenic | 45.0% | |
| GACTTCTTTCAACCGCAATG+CGG | + | chr6_3:7025553-7025572 | Msa0936360:intron | 45.0% | |
| ! | AAATGGTGGAAACCGCATTG+CGG | - | chr6_3:7025568-7025587 | None:intergenic | 45.0% |
| ATACTGTCACGGGAAAATGG+TGG | - | chr6_3:7025582-7025601 | None:intergenic | 45.0% | |
| CTTGATCAGAGTAGGTGAGT+AGG | + | chr6_3:7025719-7025738 | Msa0936360:intron | 45.0% | |
| GTGGCACATTCAATCTGTCT+TGG | - | chr6_3:7026159-7026178 | None:intergenic | 45.0% | |
| !! | GTGTTGTTTGAGCAGTACTG+TGG | - | chr6_3:7026178-7026197 | None:intergenic | 45.0% |
| ! | GTGTGTGGTTTTCGATGACA+TGG | + | chr6_3:7026465-7026484 | Msa0936360:intron | 45.0% |
| GTGCAACTTGAATTGCTTGC+AGG | - | chr6_3:7026898-7026917 | None:intergenic | 45.0% | |
| CTGCCAAATTACTCGGGTGT+CGG | - | chr6_3:7023934-7023953 | None:intergenic | 50.0% | |
| CTGCGTCTGCCAAATTACTC+GGG | - | chr6_3:7023940-7023959 | None:intergenic | 50.0% | |
| ! | TCTTTAAGCACCGCGCAAGT+TGG | - | chr6_3:7024557-7024576 | None:intergenic | 50.0% |
| GCGCGGTGCTTAAAGATATC+AGG | + | chr6_3:7024561-7024580 | Msa0936360:intron | 50.0% | |
| !!! | GTGAAGGTTTTGGAGCTTGC+AGG | + | chr6_3:7024910-7024929 | Msa0936360:CDS | 50.0% |
| !!! | AAGGTTTTGGAGCTTGCAGG+AGG | + | chr6_3:7024913-7024932 | Msa0936360:CDS | 50.0% |
| CACAATTAGGCGACTAGAGG+CGG | - | chr6_3:7025186-7025205 | None:intergenic | 50.0% | |
| GGACACAATTAGGCGACTAG+AGG | - | chr6_3:7025189-7025208 | None:intergenic | 50.0% | |
| TTGTGTTGGGTTTGAAGGGG+TGG | + | chr6_3:7025245-7025264 | Msa0936360:intron | 50.0% | |
| !! | CCGATATAAACCGGCTTGTG+AGG | + | chr6_3:7025366-7025385 | Msa0936360:intron | 50.0% |
| !! | ATAAACCGGCTTGTGAGGTG+AGG | + | chr6_3:7025371-7025390 | Msa0936360:intron | 50.0% |
| !!! | GCCTCCATTCCCCTTTTTTG+TGG | + | chr6_3:7025474-7025493 | Msa0936360:intron | 50.0% |
| TTTCATCACGCAACGCCACT+TGG | - | chr6_3:7026651-7026670 | None:intergenic | 50.0% | |
| CTAGAGGCGGAGTGCAATGA+AGG | - | chr6_3:7025173-7025192 | None:intergenic | 55.0% | |
| ! | GGTGTTGGAGGGTGCAATGA+AGG | - | chr6_3:7025221-7025240 | None:intergenic | 55.0% |
| GCAATCCTCACCTCACAAGC+CGG | - | chr6_3:7025379-7025398 | None:intergenic | 55.0% | |
| GGAGCTTGCAGGAGGAGTGA+TGG | + | chr6_3:7024921-7024940 | Msa0936360:CDS | 60.0% | |
| GACGAGCTTGCAAGCCCAGT+TGG | + | chr6_3:7024943-7024962 | Msa0936360:CDS | 60.0% | |
| GTAGGCAGGCAAGTGGGACG+CGG | + | chr6_3:7023841-7023860 | Msa0936360:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 7022580 | 7027097 | 7022580 | ID=Msa0936360;Name=Msa0936360 |
| chr6_3 | mRNA | 7022580 | 7027097 | 7022580 | ID=Msa0936360-mRNA-1;Parent=Msa0936360;Name=Msa0936360-mRNA-1;_AED=0.16;_eAED=0.16;_QI=287|1|1|1|0.66|0.5|4|278|115 |
| chr6_3 | exon | 7022580 | 7022833 | 7022580 | ID=Msa0936360-mRNA-1:exon:2287;Parent=Msa0936360-mRNA-1 |
| chr6_3 | exon | 7024693 | 7024779 | 7024693 | ID=Msa0936360-mRNA-1:exon:2288;Parent=Msa0936360-mRNA-1 |
| chr6_3 | exon | 7024904 | 7025020 | 7024904 | ID=Msa0936360-mRNA-1:exon:2289;Parent=Msa0936360-mRNA-1 |
| chr6_3 | exon | 7026643 | 7027097 | 7026643 | ID=Msa0936360-mRNA-1:exon:2290;Parent=Msa0936360-mRNA-1 |
| chr6_3 | five_prime_UTR | 7022580 | 7022833 | 7022580 | ID=Msa0936360-mRNA-1:five_prime_utr;Parent=Msa0936360-mRNA-1 |
| chr6_3 | five_prime_UTR | 7024693 | 7024725 | 7024693 | ID=Msa0936360-mRNA-1:five_prime_utr;Parent=Msa0936360-mRNA-1 |
| chr6_3 | CDS | 7024726 | 7024779 | 7024726 | ID=Msa0936360-mRNA-1:cds;Parent=Msa0936360-mRNA-1 |
| chr6_3 | CDS | 7024904 | 7025020 | 7024904 | ID=Msa0936360-mRNA-1:cds;Parent=Msa0936360-mRNA-1 |
| chr6_3 | CDS | 7026643 | 7026819 | 7026643 | ID=Msa0936360-mRNA-1:cds;Parent=Msa0936360-mRNA-1 |
| chr6_3 | three_prime_UTR | 7026820 | 7027097 | 7026820 | ID=Msa0936360-mRNA-1:three_prime_utr;Parent=Msa0936360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
