AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0272420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0272420 MtrunA17_Chr2g0282001 91.496 341 29 0 1 341 1 341 0.0 653
Msa0272420 MtrunA17_Chr2g0281991 87.097 341 44 0 1 341 2 342 0.0 617
Msa0272420 MtrunA17_Chr2g0282011 84.164 341 54 0 1 341 2 342 0.0 572
Msa0272420 MtrunA17_Chr7g0275521 60.234 342 131 4 1 339 1 340 8.27e-146 415
Msa0272420 MtrunA17_Chr1g0155411 34.524 336 199 8 7 339 8 325 1.97e-55 184
Msa0272420 MtrunA17_Chr1g0155431 33.945 327 195 8 7 330 8 316 1.32e-54 182
Msa0272420 MtrunA17_Chr7g0245731 34.024 338 195 9 2 332 53 369 4.77e-54 181
Msa0272420 MtrunA17_Chr7g0245741 34.018 341 197 9 6 339 7 326 1.29e-53 179
Msa0272420 MtrunA17_Chr4g0048961 31.940 335 214 7 6 337 13 336 3.04e-53 178
Msa0272420 MtrunA17_Chr7g0245671 34.104 346 193 10 6 339 7 329 1.21e-52 176
Msa0272420 MtrunA17_Chr7g0245691 33.819 343 207 8 2 339 3 330 2.01e-52 176
Msa0272420 MtrunA17_Chr7g0245641 33.815 346 194 10 6 339 44 366 2.90e-52 176
Msa0272420 MtrunA17_Chr7g0245631 32.558 344 206 9 2 339 3 326 1.14e-49 169
Msa0272420 MtrunA17_Chr4g0042101 29.446 343 211 7 4 332 21 346 2.21e-43 153
Msa0272420 MtrunA17_Chr4g0010991 31.563 339 209 10 7 339 8 329 7.78e-41 145
Msa0272420 MtrunA17_Chr7g0245711 30.976 297 178 8 44 334 8 283 6.53e-38 137
Msa0272420 MtrunA17_Chr3g0077231 31.834 289 178 5 7 295 6 275 9.80e-36 132
Msa0272420 MtrunA17_Chr5g0431311 30.792 341 204 11 7 340 5 320 1.97e-35 131
Msa0272420 MtrunA17_Chr3g0106111 30.088 339 203 10 7 337 5 317 1.29e-34 129
Msa0272420 MtrunA17_Chr2g0331211 29.167 336 218 7 6 340 4 320 1.70e-34 129
Msa0272420 MtrunA17_Chr5g0423551 28.319 339 212 9 8 339 5 319 5.87e-34 127
Msa0272420 MtrunA17_Chr3g0077221 31.399 293 174 7 7 295 10 279 8.80e-33 124
Msa0272420 MtrunA17_Chr4g0039321 31.399 293 174 7 7 295 9 278 5.26e-31 119
Msa0272420 MtrunA17_Chr2g0333781 30.409 342 201 11 7 341 20 331 4.06e-29 114
Msa0272420 MtrunA17_Chr4g0039311 30.690 290 180 9 7 295 11 280 1.05e-28 113
Msa0272420 MtrunA17_Chr8g0364051 28.529 333 209 8 7 334 8 316 2.66e-28 112
Msa0272420 MtrunA17_Chr4g0001321 28.107 338 214 11 7 341 17 328 3.76e-28 112
Msa0272420 MtrunA17_Chr4g0002661 29.794 339 206 13 6 339 12 323 8.85e-28 110
Msa0272420 MtrunA17_Chr8g0363831 30.137 292 178 8 7 295 9 277 3.00e-26 106
Msa0272420 MtrunA17_Chr4g0002961 30.088 339 205 13 6 339 12 323 3.21e-25 103
Msa0272420 MtrunA17_Chr2g0291541 30.625 320 191 12 7 318 10 306 8.97e-24 100
Msa0272420 MtrunA17_Chr3g0133771 26.523 279 161 13 6 279 3 242 4.50e-13 69.3
Msa0272420 MtrunA17_Chr5g0411071 24.623 199 135 6 4 202 9 192 5.67e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0272420 AT5G42800.1 32.249 338 208 7 7 341 8 327 8.91e-52 176
Msa0272420 AT1G61720.1 32.523 329 212 6 4 331 10 329 4.08e-50 171
Msa0272420 AT4G27250.1 32.036 334 206 8 8 330 14 337 5.38e-47 162
Msa0272420 AT2G45400.1 32.941 340 206 9 7 339 40 364 1.15e-46 162
Msa0272420 AT4G27250.2 32.335 334 195 10 8 330 14 327 6.28e-45 157
Msa0272420 AT2G45400.2 34.256 289 174 7 7 292 40 315 4.28e-43 152
Msa0272420 AT1G09510.1 35.034 294 162 9 7 295 8 277 6.90e-39 140
Msa0272420 AT4G35420.1 29.254 335 218 7 6 340 7 322 1.05e-36 135
Msa0272420 AT1G09500.3 33.784 296 164 9 7 295 8 278 5.70e-36 132
Msa0272420 AT1G09500.1 33.784 296 164 9 7 295 8 278 1.52e-35 132
Msa0272420 AT1G66800.1 34.589 292 152 9 7 290 8 268 3.04e-35 131
Msa0272420 AT2G45400.4 35.616 219 132 4 7 222 40 252 4.40e-35 129
Msa0272420 AT2G45400.3 31.288 326 198 10 19 339 3 307 5.57e-35 130
Msa0272420 AT5G58490.1 30.904 343 201 12 7 340 9 324 1.90e-34 129
Msa0272420 AT1G51410.1 30.201 298 189 6 2 299 4 282 1.21e-33 127
Msa0272420 AT5G19440.1 29.167 336 210 8 7 337 10 322 1.79e-33 126
Msa0272420 AT1G68540.1 29.794 339 207 9 9 339 6 321 1.82e-33 126
Msa0272420 AT1G09480.2 31.271 291 167 6 7 290 8 272 7.73e-32 122
Msa0272420 AT1G09490.1 31.922 307 173 9 7 304 8 287 1.32e-31 121
Msa0272420 AT1G09480.1 31.271 291 167 6 7 290 55 319 1.62e-31 122
Msa0272420 AT1G80820.1 30.725 345 196 12 7 341 8 319 7.47e-31 119
Msa0272420 AT1G76470.1 29.762 336 215 9 6 339 6 322 1.34e-30 119
Msa0272420 AT1G25460.1 29.254 335 212 10 9 339 6 319 8.88e-29 113
Msa0272420 AT1G15950.3 30.205 341 201 11 7 340 13 323 4.84e-28 112
Msa0272420 AT1G15950.1 30.205 341 201 11 7 340 13 323 4.84e-28 112
Msa0272420 AT2G02400.1 30.000 330 197 12 7 331 6 306 9.30e-28 110
Msa0272420 AT1G15950.2 30.094 319 187 10 7 318 13 302 7.73e-27 108
Msa0272420 AT1G80820.2 31.081 296 165 10 7 295 8 271 9.78e-27 107
Msa0272420 AT1G15950.4 30.537 298 174 9 7 300 13 281 1.60e-25 104
Msa0272420 AT1G15950.6 30.717 293 170 9 7 295 13 276 4.04e-25 102
Msa0272420 AT1G15950.5 30.272 294 172 9 7 296 13 277 1.34e-24 101
Msa0272420 AT2G33590.1 28.657 335 208 14 6 335 8 316 3.93e-24 101
Msa0272420 AT1G09500.2 30.303 264 152 9 39 295 6 244 1.10e-20 90.9
Msa0272420 AT2G33600.1 27.711 332 215 11 6 335 8 316 1.77e-20 90.9
Msa0272420 AT1G09490.2 27.957 279 157 10 39 304 9 256 8.82e-17 80.1
Msa0272420 AT4G33360.2 25.524 286 151 11 4 275 12 249 1.88e-14 73.6
Msa0272420 AT4G33360.1 24.476 286 154 9 4 275 12 249 2.48e-14 73.6
Msa0272420 AT4G33360.3 24.648 284 152 9 6 275 2 237 3.47e-14 72.8
Msa0272420 AT2G23910.2 22.615 283 191 10 4 285 8 263 6.77e-13 68.6
Msa0272420 AT2G23910.1 22.615 283 191 10 4 285 8 263 6.89e-13 68.9
Msa0272420 AT2G23910.3 22.615 283 191 10 4 285 8 263 7.47e-13 68.6
Msa0272420 AT4G30470.1 25.000 244 153 10 4 238 8 230 1.88e-12 67.4

Find 93 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGCACAAAAGTTTATATT+AGG 0.153694 2_3:+3972243 Msa0272420:three_prime_UTR
GTCAACCTTCATTTGGTTTC+CGG 0.204199 2_3:+3971860 Msa0272420:three_prime_UTR
TTCTCTTTCAAATTGAATTC+TGG 0.212502 2_3:-3970860 None:intergenic
TAGATTCTCGTGATTATATA+TGG 0.284496 2_3:+3972140 Msa0272420:three_prime_UTR
AATGCATTATCTAGTAAATA+TGG 0.292838 2_3:-3967431 None:intergenic
TCAACAAAGCTCATAGATAA+AGG 0.298417 2_3:+3971706 Msa0272420:CDS
TTAGTATTACGTTGTTGATA+TGG 0.299781 2_3:+3971894 Msa0272420:three_prime_UTR
TCTCCTAGTCAAGAAGCTTT+TGG 0.309271 2_3:+3967582 Msa0272420:CDS
ACAGGTGGTGCTGGTTATAT+TGG 0.319946 2_3:+3967556 Msa0272420:CDS
AATTCACAGCCTTGAATTGC+TGG 0.321732 2_3:-3967970 None:intergenic
AGCTGCAAGGTGTGTGTTAC+AGG 0.325911 2_3:+3967538 Msa0272420:CDS
GTGCACAAAAGTTTATATTA+GGG 0.331694 2_3:+3972244 Msa0272420:three_prime_UTR
ACAAATCACATATCTCTCTT+AGG 0.341922 2_3:-3972166 None:intergenic
CATCTTGAGATCATATTTGT+AGG 0.350926 2_3:-3971734 None:intergenic
AGTTATGGTAAAGATGAAAA+TGG 0.352631 2_3:+3970539 Msa0272420:CDS
TGTGTTATACTAATTGATTA+TGG 0.353689 2_3:+3971985 Msa0272420:three_prime_UTR
ACTTCATTGATGAAACTTGT+TGG 0.365623 2_3:+3968438 Msa0272420:CDS
AGAGAATTATTAACGAGTTA+TGG 0.366349 2_3:+3970524 Msa0272420:CDS
TATATTGGTCAACCTTCATT+TGG 0.382410 2_3:+3971853 Msa0272420:three_prime_UTR
ATAATCACTGCAACACTTGC+GGG 0.395620 2_3:-3970632 None:intergenic
AGAATCAGTTTGATGTAGAT+AGG 0.396421 2_3:-3968013 None:intergenic
ACGAGAATCTAGAATGTGAT+TGG 0.413209 2_3:-3972128 None:intergenic
GCCTCTCAGAAAGCTGACTT+TGG 0.417578 2_3:-3967881 None:intergenic
TCCTCTCACCGCTTTCCATA+AGG 0.418685 2_3:+3968484 Msa0272420:CDS
ACTCTTGGTGTTGGCCTAGT+GGG 0.433402 2_3:+3970584 Msa0272420:CDS
CGAGAATCTAGAATGTGATT+GGG 0.440617 2_3:-3972127 None:intergenic
TCCACATGCAAATACAAGAT+TGG 0.441027 2_3:+3967906 Msa0272420:CDS
TATATAATGATGGATCATCT+TGG 0.446140 2_3:+3971804 Msa0272420:exon
AGTCAAACAGAGCAATCAAA+TGG 0.449477 2_3:+3971680 Msa0272420:CDS
CAACAAAGCTCATAGATAAA+GGG 0.450243 2_3:+3971707 Msa0272420:CDS
TTCTCTCTCTGCCAATGTCT+TGG 0.450541 2_3:-3970507 None:intergenic
ATATAATGATGGATCATCTT+GGG 0.453225 2_3:+3971805 Msa0272420:exon
TCTACATCAAACTGATTCTC+AGG 0.459043 2_3:+3968017 Msa0272420:CDS
GAGGTGGTTACTCTTGGTGT+TGG 0.474061 2_3:+3970575 Msa0272420:CDS
TGAGAGGAAGGTGGAGACTC+TGG 0.474386 2_3:-3968469 None:intergenic
GCTTCTCCACTGAAGGATGA+TGG 0.480245 2_3:+3968401 Msa0272420:CDS
GGAATTGAGGTGGTTACTCT+TGG 0.482358 2_3:+3970569 Msa0272420:CDS
AATACTAATATCCACTTGTC+CGG 0.485305 2_3:-3971879 None:intergenic
AAGTTCTTAGAAGATATAGA+TGG 0.488977 2_3:+3970695 Msa0272420:CDS
GGTAAAGATGAAAATGGAAA+TGG 0.489339 2_3:+3970545 Msa0272420:CDS
ATAGAGGAAGCAGCAGTAGC+AGG 0.492362 2_3:+3968302 Msa0272420:CDS
AGAGACCCCTCATATTTACT+AGG 0.493361 2_3:+3967402 None:intergenic
GTCAAATGCGGAAGAAGGAC+GGG 0.508730 2_3:+3971772 Msa0272420:CDS
AGTTAGATTATTATCAGTGA+TGG 0.510789 2_3:+3967510 Msa0272420:exon
TTTCCAAAAGCTTCTTGACT+AGG 0.510906 2_3:-3967585 None:intergenic
GTGTGTGTTACAGGTGGTGC+TGG 0.512366 2_3:+3967547 Msa0272420:CDS
TGTCAAATGCGGAAGAAGGA+CGG 0.517919 2_3:+3971771 Msa0272420:CDS
CTTCTCCACTGAAGGATGAT+GGG 0.521350 2_3:+3968402 Msa0272420:CDS
GGAAAGCGGTGAGAGGAAGG+TGG 0.525033 2_3:-3968478 None:intergenic
AGACCATCGTTGATTACCTA+CGG 0.530299 2_3:-3971924 None:intergenic
ATAGTGTCAAATGCGGAAGA+AGG 0.537899 2_3:+3971767 Msa0272420:CDS
TACTCTTGGTGTTGGCCTAG+TGG 0.540652 2_3:+3970583 Msa0272420:CDS
GTCAAACAGAGCAATCAAAT+GGG 0.548805 2_3:+3971681 Msa0272420:CDS
TCATTTGGTTTCCGGACAAG+TGG 0.553695 2_3:+3971868 Msa0272420:three_prime_UTR
AAAGATGAAAATGGAAATGG+TGG 0.554971 2_3:+3970548 Msa0272420:CDS
GAATCAGTTTGATGTAGATA+GGG 0.556532 2_3:-3968012 None:intergenic
GCGATCTTAGTATATAATGA+TGG 0.557596 2_3:+3971794 Msa0272420:exon
GATTATTATCAGTGATGGAA+AGG 0.557631 2_3:+3967515 Msa0272420:exon
GGTTGCTGCTTCTCCACTGA+AGG 0.558373 2_3:+3968394 Msa0272420:CDS
TATGGAAAGCGGTGAGAGGA+AGG 0.562621 2_3:-3968481 None:intergenic
ACATCATCAATGTGGACTAG+TGG 0.564824 2_3:-3970725 None:intergenic
ACCAATCTTGTATTTGCATG+TGG 0.567821 2_3:-3967907 None:intergenic
CTTGGTGTTGGCCTAGTGGG+AGG 0.579025 2_3:+3970587 Msa0272420:CDS
CTTGTCCGGAAACCAAATGA+AGG 0.581533 2_3:-3971865 None:intergenic
GATAATCACTGCAACACTTG+CGG 0.586260 2_3:-3970633 None:intergenic
GAAGAGCATCTCCTCCCACT+AGG 0.587729 2_3:-3970598 None:intergenic
AATACTCAAGTTTCTGAGAG+TGG 0.592377 2_3:-3967626 None:intergenic
GAGAATCTAGAATGTGATTG+GGG 0.592559 2_3:-3972126 None:intergenic
AGTTTGATGTAGATAGGGAG+TGG 0.593081 2_3:-3968007 None:intergenic
AAATGGAAATGGTGGAATTG+AGG 0.596604 2_3:+3970556 Msa0272420:CDS
GTACGCTTATTCCAAGACAT+TGG 0.600674 2_3:+3970496 Msa0272420:CDS
AGTATTTACCTTATGGAAAG+CGG 0.602744 2_3:-3968492 None:intergenic
ACCTTATGGAAAGCGGTGAG+AGG 0.612095 2_3:-3968485 None:intergenic
CCACTGAAGGATGATGGGAG+TGG 0.616498 2_3:+3968407 Msa0272420:CDS
GGAAGGTGGAGACTCTGGAG+AGG 0.622635 2_3:-3968464 None:intergenic
AGGACAGTTTAAGAGCATAG+AGG 0.626813 2_3:+3968286 Msa0272420:intron
TCAAGTTTCTGAGAGTGGCA+TGG 0.630524 2_3:-3967621 None:intergenic
CAGTGGAGAAGCAGCAACCA+CGG 0.636125 2_3:-3968390 None:intergenic
TGCAAGGTGTGTGTTACAGG+TGG 0.636996 2_3:+3967541 Msa0272420:CDS
CCACTCCCATCATCCTTCAG+TGG 0.640324 2_3:-3968407 None:intergenic
GCGAGAAGACTGATATACAC+TGG 0.641046 2_3:+3968365 Msa0272420:CDS
GTAGATAGGGAGTGGCAACA+TGG 0.645401 2_3:-3967999 None:intergenic
GACCCCTCATATTTACTAGG+TGG 0.648898 2_3:+3967405 None:intergenic
TTGATATGGAGACACTCCGT+AGG 0.650270 2_3:+3971908 Msa0272420:three_prime_UTR
AGTGATGGAAAGGAGCTGCA+AGG 0.651284 2_3:+3967525 Msa0272420:exon
ATATGTTAGATCATTGTGAG+TGG 0.657002 2_3:+3967484 Msa0272420:five_prime_UTR
TCCAAAGTCAGCTTTCTGAG+AGG 0.659613 2_3:+3967880 Msa0272420:CDS
TGGAAATGGTGGAATTGAGG+TGG 0.673716 2_3:+3970559 Msa0272420:CDS
CTTCACAAACATCATCAATG+TGG 0.701450 2_3:-3970733 None:intergenic
AGAATCTAGAATGTGATTGG+GGG 0.723264 2_3:-3972125 None:intergenic
ACTCCGTAGGTAATCAACGA+TGG 0.726822 2_3:+3971921 Msa0272420:three_prime_UTR
CTAGACGATAGTGTCAAATG+CGG 0.728283 2_3:+3971760 Msa0272420:CDS
ACTGATATACACTGGCACCG+TGG 0.763689 2_3:+3968373 Msa0272420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTAATTAAATATAAA+CGG + chr2_3:3967775-3967794 Msa0272420:intron 0.0%
!! CAAATAATTAAAAGAATAAA+AGG - chr2_3:3969144-3969163 None:intergenic 10.0%
!! TAAATGGTAAAATAAAATTT+AGG + chr2_3:3969631-3969650 Msa0272420:intron 10.0%
!! AAATGGTAAAATAAAATTTA+GGG + chr2_3:3969632-3969651 Msa0272420:intron 10.0%
!! TGTTAAAAAAATCATTAAAT+GGG - chr2_3:3969904-3969923 None:intergenic 10.0%
!! TCTAAATAAAAAAAAACAAT+AGG + chr2_3:3971944-3971963 Msa0272420:three_prime_UTR 10.0%
!! TAAAAAAATAAATAAGGTAA+TGG + chr2_3:3972015-3972034 Msa0272420:three_prime_UTR 10.0%
!! CTAAAAAGAATTGAAAAAAA+TGG - chr2_3:3967707-3967726 None:intergenic 15.0%
!! AAGAGTAATAATCAATATTT+GGG - chr2_3:3968050-3968069 None:intergenic 15.0%
!! AAAGAGTAATAATCAATATT+TGG - chr2_3:3968051-3968070 None:intergenic 15.0%
!! TATATATAGTATTTACCTTA+TGG - chr2_3:3968502-3968521 None:intergenic 15.0%
!!! TTAAAGGTTAAATATGTTTT+TGG - chr2_3:3968603-3968622 None:intergenic 15.0%
!! TTCTATAAAAAAAAAACGTT+TGG - chr2_3:3968686-3968705 None:intergenic 15.0%
!! ATAGTCACAAAATATTAATA+GGG - chr2_3:3969214-3969233 None:intergenic 15.0%
!! TATAGTCACAAAATATTAAT+AGG - chr2_3:3969215-3969234 None:intergenic 15.0%
!! GAAAATTCAAAGTTATAATA+GGG + chr2_3:3969506-3969525 Msa0272420:intron 15.0%
!!! TTTTCAACAAAATAATGATA+AGG + chr2_3:3969538-3969557 Msa0272420:intron 15.0%
!! CTGTTAAAAAAATCATTAAA+TGG - chr2_3:3969905-3969924 None:intergenic 15.0%
!! AAAAAAAAAAACTTTAGACA+TGG - chr2_3:3970146-3970165 None:intergenic 15.0%
!!! GTCTAAAGTTTTTTTTTTTT+TGG + chr2_3:3970147-3970166 Msa0272420:intron 15.0%
!!! TAAAGTTTTTTTTTTTTTGG+AGG + chr2_3:3970150-3970169 Msa0272420:intron 15.0%
!! TAAAGTTTACAAATAGTTTA+TGG + chr2_3:3971062-3971081 Msa0272420:intron 15.0%
!! CTTGCATAAAAAAATAAATA+AGG + chr2_3:3972009-3972028 Msa0272420:three_prime_UTR 15.0%
!! AATGCATTATCTAGTAAATA+TGG - chr2_3:3967434-3967453 None:intergenic 20.0%
!! AAAGAATTGAAAAAAATGGA+TGG - chr2_3:3967703-3967722 None:intergenic 20.0%
!!! AATTCATTTATTGATTTCAG+AGG + chr2_3:3967852-3967871 Msa0272420:intron 20.0%
!! ATGGCTAATGATAAAATTAA+AGG - chr2_3:3968619-3968638 None:intergenic 20.0%
!!! TTTTTTTTTGGTAGATGTTT+GGG - chr2_3:3968655-3968674 None:intergenic 20.0%
!!! TTTTTTTTTTGGTAGATGTT+TGG - chr2_3:3968656-3968675 None:intergenic 20.0%
!! AAACATCTACCAAAAAAAAA+AGG + chr2_3:3968655-3968674 Msa0272420:intron 20.0%
!! AACATCTACCAAAAAAAAAA+GGG + chr2_3:3968656-3968675 Msa0272420:intron 20.0%
!! TGAAGAAAAAAAAAAGTTTG+TGG - chr2_3:3968901-3968920 None:intergenic 20.0%
!! AAAAAGATAGAAATATCAAG+CGG - chr2_3:3968938-3968957 None:intergenic 20.0%
!!! ATTTTCCTATGAAATCTTTA+GGG - chr2_3:3969492-3969511 None:intergenic 20.0%
!!! AATTTTCCTATGAAATCTTT+AGG - chr2_3:3969493-3969512 None:intergenic 20.0%
!! GGAAAATTCAAAGTTATAAT+AGG + chr2_3:3969505-3969524 Msa0272420:intron 20.0%
!! GTTATTCATAAGTAATTTCT+TGG + chr2_3:3969811-3969830 Msa0272420:intron 20.0%
!!! ATTTTTTTAACAGTCTAGTT+TGG + chr2_3:3969912-3969931 Msa0272420:intron 20.0%
!!! AAATATCGAATTGTAACTTT+TGG + chr2_3:3970344-3970363 Msa0272420:intron 20.0%
!! ATACTATATGTTGTATAAGT+TGG - chr2_3:3970912-3970931 None:intergenic 20.0%
!! TGTTATATATGGATGTTAAA+TGG + chr2_3:3971391-3971410 Msa0272420:intron 20.0%
!!! AATGGAGGTATAAAAATTAA+AGG + chr2_3:3971409-3971428 Msa0272420:intron 20.0%
!! GCAAGTTAAAAAATGTATAT+TGG + chr2_3:3971838-3971857 Msa0272420:three_prime_UTR 20.0%
!! TGTGTTATACTAATTGATTA+TGG + chr2_3:3971985-3972004 Msa0272420:three_prime_UTR 20.0%
! AGTTAGATTATTATCAGTGA+TGG + chr2_3:3967510-3967529 Msa0272420:exon 25.0%
! AGAAAAAAAAAATGCAGAGA+GGG - chr2_3:3967670-3967689 None:intergenic 25.0%
! AAGAAAAAAAAAATGCAGAG+AGG - chr2_3:3967671-3967690 None:intergenic 25.0%
!! TCTATAAACCAGATGATTTT+TGG + chr2_3:3967947-3967966 Msa0272420:CDS 25.0%
!! ATTACTCTTTTCTTTCCTTT+TGG + chr2_3:3968061-3968080 Msa0272420:intron 25.0%
!! ATTTCAAGTACATAACCAAA+AGG - chr2_3:3968079-3968098 None:intergenic 25.0%
! ACTTTCTCACACAATAATAA+TGG + chr2_3:3968528-3968547 Msa0272420:intron 25.0%
! TTATCATTAGCCATACATAA+AGG + chr2_3:3968625-3968644 Msa0272420:intron 25.0%
! TATCATTAGCCATACATAAA+GGG + chr2_3:3968626-3968645 Msa0272420:intron 25.0%
! TAGAATACGTTTATGTGAAT+TGG + chr2_3:3968701-3968720 Msa0272420:intron 25.0%
! AGAATACGTTTATGTGAATT+GGG + chr2_3:3968702-3968721 Msa0272420:intron 25.0%
!!! CTTTTTTTTTTCTTCAGAAG+AGG + chr2_3:3968905-3968924 Msa0272420:intron 25.0%
! TGTTAACACATCCTAAATTA+AGG + chr2_3:3968997-3969016 Msa0272420:intron 25.0%
! GTTAACACATCCTAAATTAA+GGG + chr2_3:3968998-3969017 Msa0272420:intron 25.0%
! GTATGTTTAACCCTTAATTT+AGG - chr2_3:3969011-3969030 None:intergenic 25.0%
! ATTAAGGGTTAAACATACAA+AGG + chr2_3:3969013-3969032 Msa0272420:intron 25.0%
! TTAAGGGTTAAACATACAAA+GGG + chr2_3:3969014-3969033 Msa0272420:intron 25.0%
!! TGACTAATGACATTAGTTTA+CGG + chr2_3:3969052-3969071 Msa0272420:intron 25.0%
! ACACAACATGTTATTATTCT+AGG + chr2_3:3969234-3969253 Msa0272420:intron 25.0%
!! ATGTTATTATTCTAGGTTGA+GGG + chr2_3:3969241-3969260 Msa0272420:intron 25.0%
! TTTGTGGGAAGAAAAAAAAT+GGG - chr2_3:3969853-3969872 None:intergenic 25.0%
! ATTTGTGGGAAGAAAAAAAA+TGG - chr2_3:3969854-3969873 None:intergenic 25.0%
! TATGTGCTTATTTGATCTAA+GGG + chr2_3:3970064-3970083 Msa0272420:intron 25.0%
! AAAAAAAACTTTAGACATGG+TGG - chr2_3:3970143-3970162 None:intergenic 25.0%
! CACATATTGGATGTAAATAT+AGG - chr2_3:3970180-3970199 None:intergenic 25.0%
! CTATATTTACATCCAATATG+TGG + chr2_3:3970178-3970197 Msa0272420:intron 25.0%
!!! TGATTTCAAGTTTAATATCG+AGG - chr2_3:3970218-3970237 None:intergenic 25.0%
! AAATCAATATGACACATCTA+TGG + chr2_3:3970305-3970324 Msa0272420:intron 25.0%
! AGAGAATTATTAACGAGTTA+TGG + chr2_3:3970524-3970543 Msa0272420:CDS 25.0%
! AGTTATGGTAAAGATGAAAA+TGG + chr2_3:3970539-3970558 Msa0272420:CDS 25.0%
! AAGTTCTTAGAAGATATAGA+TGG + chr2_3:3970695-3970714 Msa0272420:CDS 25.0%
!! ATCTATCAATGACAGATTTT+TGG + chr2_3:3970781-3970800 Msa0272420:CDS 25.0%
! TTCTCTTTCAAATTGAATTC+TGG - chr2_3:3970863-3970882 None:intergenic 25.0%
! TATAAGAGATTTCTCTTTGT+AGG - chr2_3:3970958-3970977 None:intergenic 25.0%
! TCTTTAACATGTGTCATAAA+AGG + chr2_3:3971194-3971213 Msa0272420:intron 25.0%
! CATATATAACAAAGCATGAT+TGG - chr2_3:3971382-3971401 None:intergenic 25.0%
!! CAATCATGCTTTGTTATATA+TGG + chr2_3:3971380-3971399 Msa0272420:intron 25.0%
! TATATATGGATGTTAAATGG+AGG + chr2_3:3971394-3971413 Msa0272420:intron 25.0%
! AAATCTTAGTATGATTCACA+AGG + chr2_3:3971575-3971594 Msa0272420:intron 25.0%
!! AATATTTGCCATCTGATTTT+AGG + chr2_3:3971647-3971666 Msa0272420:intron 25.0%
!!! TATATAATGATGGATCATCT+TGG + chr2_3:3971804-3971823 Msa0272420:exon 25.0%
!!! ATATAATGATGGATCATCTT+GGG + chr2_3:3971805-3971824 Msa0272420:exon 25.0%
! TTAGTATTACGTTGTTGATA+TGG + chr2_3:3971894-3971913 Msa0272420:three_prime_UTR 25.0%
! TAGATTCTCGTGATTATATA+TGG + chr2_3:3972140-3972159 Msa0272420:three_prime_UTR 25.0%
! AGCTAAAATACCAAAAAGAT+AGG - chr2_3:3972192-3972211 None:intergenic 25.0%
! TGTGCACAAAAGTTTATATT+AGG + chr2_3:3972243-3972262 Msa0272420:three_prime_UTR 25.0%
! GTGCACAAAAGTTTATATTA+GGG + chr2_3:3972244-3972263 Msa0272420:three_prime_UTR 25.0%
!!! TGTTTTTTCACTATTGTGTG+TGG + chr2_3:3967453-3967472 Msa0272420:five_prime_UTR 30.0%
ATATGTTAGATCATTGTGAG+TGG + chr2_3:3967484-3967503 Msa0272420:five_prime_UTR 30.0%
! GATTATTATCAGTGATGGAA+AGG + chr2_3:3967515-3967534 Msa0272420:exon 30.0%
GAATTGAAAAAAATGGATGG+TGG - chr2_3:3967700-3967719 None:intergenic 30.0%
GAATCAGTTTGATGTAGATA+GGG - chr2_3:3968015-3968034 None:intergenic 30.0%
AGAATCAGTTTGATGTAGAT+AGG - chr2_3:3968016-3968035 None:intergenic 30.0%
AGCACTCACAACAATAAAAT+TGG - chr2_3:3968108-3968127 None:intergenic 30.0%
TCGTTGATATAAGTGAATGT+TGG + chr2_3:3968262-3968281 Msa0272420:intron 30.0%
TGATATAAGTGAATGTTGGT+AGG + chr2_3:3968266-3968285 Msa0272420:intron 30.0%
ACTTCATTGATGAAACTTGT+TGG + chr2_3:3968438-3968457 Msa0272420:CDS 30.0%
AGTATTTACCTTATGGAAAG+CGG - chr2_3:3968495-3968514 None:intergenic 30.0%
TCTACCAAAAAAAAAAGGGT+CGG + chr2_3:3968660-3968679 Msa0272420:intron 30.0%
CTAACAATTGTACGTAATGA+CGG + chr2_3:3968772-3968791 Msa0272420:intron 30.0%
ATATTAGTTCATATCCCCAA+AGG - chr2_3:3968871-3968890 None:intergenic 30.0%
TAAACATACAAAGGGTAAGT+AGG + chr2_3:3969022-3969041 Msa0272420:intron 30.0%
CATGTTATTATTCTAGGTTG+AGG + chr2_3:3969240-3969259 Msa0272420:intron 30.0%
CAACATGGTTGTAGTTAAAA+AGG + chr2_3:3969736-3969755 Msa0272420:intron 30.0%
ATAAGTAATTTCTTGGCTGA+TGG + chr2_3:3969818-3969837 Msa0272420:intron 30.0%
! TTCTTCTGTGGATAATTTGT+GGG - chr2_3:3969868-3969887 None:intergenic 30.0%
ATTCTTCTGTGGATAATTTG+TGG - chr2_3:3969869-3969888 None:intergenic 30.0%
!! TGGTTTTCTAAGAATGTTTC+TGG + chr2_3:3969932-3969951 Msa0272420:intron 30.0%
AAAAAGAAGCTAATCATGTG+TGG + chr2_3:3970023-3970042 Msa0272420:intron 30.0%
GTATGTGCTTATTTGATCTA+AGG + chr2_3:3970063-3970082 Msa0272420:intron 30.0%
TAGTGGTAAAAACCACATAT+TGG - chr2_3:3970193-3970212 None:intergenic 30.0%
AGTTTAATATCGAGGATTAG+TGG - chr2_3:3970210-3970229 None:intergenic 30.0%
! AACTACCAAATCGTAACTTT+TGG + chr2_3:3970280-3970299 Msa0272420:intron 30.0%
! TTTTGCCAAAAGTTACGATT+TGG - chr2_3:3970288-3970307 None:intergenic 30.0%
GCTCGATATATAACAAATCA+CGG + chr2_3:3970456-3970475 Msa0272420:intron 30.0%
GGTAAAGATGAAAATGGAAA+TGG + chr2_3:3970545-3970564 Msa0272420:CDS 30.0%
AAAGATGAAAATGGAAATGG+TGG + chr2_3:3970548-3970567 Msa0272420:CDS 30.0%
! CTGTCATAAACTTTTTACGT+TGG + chr2_3:3971239-3971258 Msa0272420:intron 30.0%
! ATAAGTACCCATCTTTTTAG+AGG - chr2_3:3971269-3971288 None:intergenic 30.0%
ATATAAGACCCTACTAAAGA+TGG + chr2_3:3971525-3971544 Msa0272420:intron 30.0%
CAATCTAACCATCTTTAGTA+GGG - chr2_3:3971536-3971555 None:intergenic 30.0%
TCAATCTAACCATCTTTAGT+AGG - chr2_3:3971537-3971556 None:intergenic 30.0%
TCCAAATACCTAAAATCAGA+TGG - chr2_3:3971658-3971677 None:intergenic 30.0%
TCAACAAAGCTCATAGATAA+AGG + chr2_3:3971706-3971725 Msa0272420:CDS 30.0%
CAACAAAGCTCATAGATAAA+GGG + chr2_3:3971707-3971726 Msa0272420:CDS 30.0%
CATCTTGAGATCATATTTGT+AGG - chr2_3:3971737-3971756 None:intergenic 30.0%
GCGATCTTAGTATATAATGA+TGG + chr2_3:3971794-3971813 Msa0272420:exon 30.0%
TATATTGGTCAACCTTCATT+TGG + chr2_3:3971853-3971872 Msa0272420:three_prime_UTR 30.0%
AATACTAATATCCACTTGTC+CGG - chr2_3:3971882-3971901 None:intergenic 30.0%
CGAAAAAACACAAACATCTT+GGG - chr2_3:3972048-3972067 None:intergenic 30.0%
ACGAAAAAACACAAACATCT+TGG - chr2_3:3972049-3972068 None:intergenic 30.0%
ACAAATCACATATCTCTCTT+AGG - chr2_3:3972169-3972188 None:intergenic 30.0%
!! TGTGATTTGTCCTATCTTTT+TGG + chr2_3:3972179-3972198 Msa0272420:three_prime_UTR 30.0%
!! TTATATTAGGGTGCTCTTTT+TGG + chr2_3:3972256-3972275 Msa0272420:three_prime_UTR 30.0%
!!! GTGCTCTTTTTGGTTTATTA+GGG + chr2_3:3972266-3972285 Msa0272420:three_prime_UTR 30.0%
TTTCCAAAAGCTTCTTGACT+AGG - chr2_3:3967588-3967607 None:intergenic 35.0%
!! AGTCAAGAAGCTTTTGGAAA+AGG + chr2_3:3967588-3967607 Msa0272420:CDS 35.0%
!! GTCAAGAAGCTTTTGGAAAA+GGG + chr2_3:3967589-3967608 Msa0272420:CDS 35.0%
! AATACTCAAGTTTCTGAGAG+TGG - chr2_3:3967629-3967648 None:intergenic 35.0%
AAAAAATGCAGAGAGGGAAA+GGG - chr2_3:3967664-3967683 None:intergenic 35.0%
AAAAAAATGCAGAGAGGGAA+AGG - chr2_3:3967665-3967684 None:intergenic 35.0%
TCCACATGCAAATACAAGAT+TGG + chr2_3:3967906-3967925 Msa0272420:CDS 35.0%
ACCAATCTTGTATTTGCATG+TGG - chr2_3:3967910-3967929 None:intergenic 35.0%
! TCTACATCAAACTGATTCTC+AGG + chr2_3:3968017-3968036 Msa0272420:CDS 35.0%
GTTGTGCATAGTAAAATAGC+TGG - chr2_3:3969323-3969342 None:intergenic 35.0%
TTGTAAATGCAATTCTCCGA+CGG - chr2_3:3969460-3969479 None:intergenic 35.0%
ACACACCCTAAAGATTTCAT+AGG + chr2_3:3969484-3969503 Msa0272420:intron 35.0%
TGCGAGTAAAATCAATGACA+GGG - chr2_3:3969604-3969623 None:intergenic 35.0%
TTGCGAGTAAAATCAATGAC+AGG - chr2_3:3969605-3969624 None:intergenic 35.0%
!!! TGTCATTGATTTTACTCGCA+AGG + chr2_3:3969604-3969623 Msa0272420:intron 35.0%
! TTTAGGGCTCTTCTAAATCT+TGG + chr2_3:3969648-3969667 Msa0272420:intron 35.0%
GTGACTTAAACAATGCTTTG+AGG + chr2_3:3969712-3969731 Msa0272420:intron 35.0%
! ACTGCTTTAGTTCATTGTTC+TGG - chr2_3:3969783-3969802 None:intergenic 35.0%
AGAACAATGAACTAAAGCAG+TGG + chr2_3:3969782-3969801 Msa0272420:intron 35.0%
! GTTTCAGATTGATTCTTCTG+TGG - chr2_3:3969880-3969899 None:intergenic 35.0%
! GTGAACATTTGAAGCATTCA+TGG + chr2_3:3969954-3969973 Msa0272420:intron 35.0%
AGCATTCATGGATATTGTTC+AGG + chr2_3:3969966-3969985 Msa0272420:intron 35.0%
!! TTTAGACATGGTGGATTCTA+GGG - chr2_3:3970134-3970153 None:intergenic 35.0%
! AAATGGAAATGGTGGAATTG+AGG + chr2_3:3970556-3970575 Msa0272420:CDS 35.0%
CTTCACAAACATCATCAATG+TGG - chr2_3:3970736-3970755 None:intergenic 35.0%
!! CAGATTTGATAATGTCAAGC+CGG + chr2_3:3971011-3971030 Msa0272420:intron 35.0%
AAAAATTACATCGATCCGAG+TGG + chr2_3:3971462-3971481 Msa0272420:intron 35.0%
CTTAGTATGATTCACAAGGT+TGG + chr2_3:3971579-3971598 Msa0272420:intron 35.0%
!! GCCATCTGATTTTAGGTATT+TGG + chr2_3:3971654-3971673 Msa0272420:intron 35.0%
AGTCAAACAGAGCAATCAAA+TGG + chr2_3:3971680-3971699 Msa0272420:CDS 35.0%
GTCAAACAGAGCAATCAAAT+GGG + chr2_3:3971681-3971700 Msa0272420:CDS 35.0%
! AGAATCTAGAATGTGATTGG+GGG - chr2_3:3972128-3972147 None:intergenic 35.0%
! GAGAATCTAGAATGTGATTG+GGG - chr2_3:3972129-3972148 None:intergenic 35.0%
! CGAGAATCTAGAATGTGATT+GGG - chr2_3:3972130-3972149 None:intergenic 35.0%
! ACGAGAATCTAGAATGTGAT+TGG - chr2_3:3972131-3972150 None:intergenic 35.0%
!!! TTGGTATTTTAGCTACAGCA+AGG + chr2_3:3972198-3972217 Msa0272420:three_prime_UTR 35.0%
!!! GGTGCTCTTTTTGGTTTATT+AGG + chr2_3:3972265-3972284 Msa0272420:three_prime_UTR 35.0%
! TCTCCTAGTCAAGAAGCTTT+TGG + chr2_3:3967582-3967601 Msa0272420:CDS 40.0%
GCACTGCATATAACAACTGT+TGG - chr2_3:3967802-3967821 None:intergenic 40.0%
ATTGCTGGCCAAAAATCATC+TGG - chr2_3:3967958-3967977 None:intergenic 40.0%
!!! GATTTTTGGCCAGCAATTCA+AGG + chr2_3:3967961-3967980 Msa0272420:CDS 40.0%
AATTCACAGCCTTGAATTGC+TGG - chr2_3:3967973-3967992 None:intergenic 40.0%
AGTTTGATGTAGATAGGGAG+TGG - chr2_3:3968010-3968029 None:intergenic 40.0%
! AGGACAGTTTAAGAGCATAG+AGG + chr2_3:3968286-3968305 Msa0272420:intron 40.0%
!!! TTGGCCGACCCTTTTTTTTT+TGG - chr2_3:3968667-3968686 None:intergenic 40.0%
AGTGATCCTTGCACTAACAA+CGG + chr2_3:3968807-3968826 Msa0272420:intron 40.0%
GATCTAATGGTCAAGATGAG+TGG - chr2_3:3969292-3969311 None:intergenic 40.0%
AGTAAAATAGCTGGATGCGT+TGG - chr2_3:3969314-3969333 None:intergenic 40.0%
!!! AATTCTCCGACGGACTTTTT+TGG - chr2_3:3969450-3969469 None:intergenic 40.0%
AATCAATGACAGGGACATGA+TGG - chr2_3:3969595-3969614 None:intergenic 40.0%
! TTACTCGCAAGGTGCTTAAA+TGG + chr2_3:3969615-3969634 Msa0272420:intron 40.0%
!! ACAATGCTTTGAGGTCAACA+TGG + chr2_3:3969721-3969740 Msa0272420:intron 40.0%
CAATGAACTAAAGCAGTGGA+AGG + chr2_3:3969786-3969805 Msa0272420:intron 40.0%
!! CTTTAGACATGGTGGATTCT+AGG - chr2_3:3970135-3970154 None:intergenic 40.0%
ATGTGTATCTTAGGATTCGC+GGG - chr2_3:3970407-3970426 None:intergenic 40.0%
CATGTGTATCTTAGGATTCG+CGG - chr2_3:3970408-3970427 None:intergenic 40.0%
CGAATCCTAAGATACACATG+TGG + chr2_3:3970408-3970427 Msa0272420:intron 40.0%
GAACACCACATGTGTATCTT+AGG - chr2_3:3970416-3970435 None:intergenic 40.0%
ATCACGGTGAATCTCTTTGT+AGG + chr2_3:3970472-3970491 Msa0272420:intron 40.0%
GTACGCTTATTCCAAGACAT+TGG + chr2_3:3970496-3970515 Msa0272420:CDS 40.0%
ATAATCACTGCAACACTTGC+GGG - chr2_3:3970635-3970654 None:intergenic 40.0%
GATAATCACTGCAACACTTG+CGG - chr2_3:3970636-3970655 None:intergenic 40.0%
!! ACATCATCAATGTGGACTAG+TGG - chr2_3:3970728-3970747 None:intergenic 40.0%
! TTGGTCTGCCTCTAAAAAGA+TGG + chr2_3:3971258-3971277 Msa0272420:intron 40.0%
! TGGTCTGCCTCTAAAAAGAT+GGG + chr2_3:3971259-3971278 Msa0272420:intron 40.0%
CCACAAAGTCAAATTCCACT+CGG - chr2_3:3971480-3971499 None:intergenic 40.0%
CTAGACGATAGTGTCAAATG+CGG + chr2_3:3971760-3971779 Msa0272420:CDS 40.0%
ATAGTGTCAAATGCGGAAGA+AGG + chr2_3:3971767-3971786 Msa0272420:CDS 40.0%
! GTCAACCTTCATTTGGTTTC+CGG + chr2_3:3971860-3971879 Msa0272420:three_prime_UTR 40.0%
! AGACCATCGTTGATTACCTA+CGG - chr2_3:3971927-3971946 None:intergenic 40.0%
!! ACAGGTGGTGCTGGTTATAT+TGG + chr2_3:3967556-3967575 Msa0272420:CDS 45.0%
! TCAAGTTTCTGAGAGTGGCA+TGG - chr2_3:3967624-3967643 None:intergenic 45.0%
TCCAAAGTCAGCTTTCTGAG+AGG + chr2_3:3967880-3967899 Msa0272420:CDS 45.0%
GCGAGAAGACTGATATACAC+TGG + chr2_3:3968365-3968384 Msa0272420:CDS 45.0%
CTTCTCCACTGAAGGATGAT+GGG + chr2_3:3968402-3968421 Msa0272420:CDS 45.0%
TTTGGGCGACCCTTTATGTA+TGG - chr2_3:3968638-3968657 None:intergenic 45.0%
GTGATCCTTGCACTAACAAC+GGG + chr2_3:3968808-3968827 Msa0272420:intron 45.0%
TGATCCTTGCACTAACAACG+GGG + chr2_3:3968809-3968828 Msa0272420:intron 45.0%
TTCATATCCCCAAAGGACGT+GGG - chr2_3:3968864-3968883 None:intergenic 45.0%
GGTCCAATTAAATCCCTCAC+CGG + chr2_3:3969262-3969281 Msa0272420:intron 45.0%
ACACCGGTGAGGGATTTAAT+TGG - chr2_3:3969268-3969287 None:intergenic 45.0%
! CACTGGATAGTGGTGCATTT+GGG - chr2_3:3969394-3969413 None:intergenic 45.0%
! TCACTGGATAGTGGTGCATT+TGG - chr2_3:3969395-3969414 None:intergenic 45.0%
!!! CTTTTTTGGTGGCAGTGTCA+TGG - chr2_3:3969436-3969455 None:intergenic 45.0%
CATGGATATTGTTCAGGCTG+TGG + chr2_3:3969972-3969991 Msa0272420:intron 45.0%
GATCTAAGGGTCAAGATGAG+TGG + chr2_3:3970077-3970096 Msa0272420:intron 45.0%
ACACTGGTGAGGGACTTAAT+TGG + chr2_3:3970101-3970120 Msa0272420:intron 45.0%
TGTGTATCTTAGGATTCGCG+GGG - chr2_3:3970406-3970425 None:intergenic 45.0%
TTCTCTCTCTGCCAATGTCT+TGG - chr2_3:3970510-3970529 None:intergenic 45.0%
! TGGAAATGGTGGAATTGAGG+TGG + chr2_3:3970559-3970578 Msa0272420:CDS 45.0%
GGAATTGAGGTGGTTACTCT+TGG + chr2_3:3970569-3970588 Msa0272420:CDS 45.0%
CACCTAATTGTCTCACTCAC+CGG - chr2_3:3971033-3971052 None:intergenic 45.0%
! CCGAGTGGAATTTGACTTTG+TGG + chr2_3:3971477-3971496 Msa0272420:intron 45.0%
TGTCAAATGCGGAAGAAGGA+CGG + chr2_3:3971771-3971790 Msa0272420:CDS 45.0%
CTTGTCCGGAAACCAAATGA+AGG - chr2_3:3971868-3971887 None:intergenic 45.0%
! TCATTTGGTTTCCGGACAAG+TGG + chr2_3:3971868-3971887 Msa0272420:three_prime_UTR 45.0%
TTGATATGGAGACACTCCGT+AGG + chr2_3:3971908-3971927 Msa0272420:three_prime_UTR 45.0%
ACTCCGTAGGTAATCAACGA+TGG + chr2_3:3971921-3971940 Msa0272420:three_prime_UTR 45.0%
TAGAATGTGATTGGGGGTTG+AGG - chr2_3:3972122-3972141 None:intergenic 45.0%
!! ATATTTAATTAAAAAATGAA+CGG - chr2_3:3967772-3967791 None:intergenic 5.0%
! AGTGATGGAAAGGAGCTGCA+AGG + chr2_3:3967525-3967544 Msa0272420:exon 50.0%
AGCTGCAAGGTGTGTGTTAC+AGG + chr2_3:3967538-3967557 Msa0272420:CDS 50.0%
TGCAAGGTGTGTGTTACAGG+TGG + chr2_3:3967541-3967560 Msa0272420:CDS 50.0%
! GCCTCTCAGAAAGCTGACTT+TGG - chr2_3:3967884-3967903 None:intergenic 50.0%
GTAGATAGGGAGTGGCAACA+TGG - chr2_3:3968002-3968021 None:intergenic 50.0%
ATAGAGGAAGCAGCAGTAGC+AGG + chr2_3:3968302-3968321 Msa0272420:CDS 50.0%
ACTGATATACACTGGCACCG+TGG + chr2_3:3968373-3968392 Msa0272420:CDS 50.0%
GCTTCTCCACTGAAGGATGA+TGG + chr2_3:3968401-3968420 Msa0272420:CDS 50.0%
TATGGAAAGCGGTGAGAGGA+AGG - chr2_3:3968484-3968503 None:intergenic 50.0%
TCCTCTCACCGCTTTCCATA+AGG + chr2_3:3968484-3968503 Msa0272420:CDS 50.0%
ACCTTATGGAAAGCGGTGAG+AGG - chr2_3:3968488-3968507 None:intergenic 50.0%
GATCCTTGCACTAACAACGG+GGG + chr2_3:3968810-3968829 Msa0272420:intron 50.0%
TGGTTGAACCCACGTCCTTT+GGG + chr2_3:3968853-3968872 Msa0272420:intron 50.0%
GTTCATATCCCCAAAGGACG+TGG - chr2_3:3968865-3968884 None:intergenic 50.0%
GGTCAAGATGAGTGGTACAC+CGG - chr2_3:3970085-3970104 None:intergenic 50.0%
GCTGGATGCGTTGGATCTAA+TGG - chr2_3:3969305-3969324 None:intergenic 50.0%
! GATAGTGGTGCATTTGGGTG+AGG - chr2_3:3969389-3969408 None:intergenic 50.0%
GGTGGTAGTTCACTGGATAG+TGG - chr2_3:3969404-3969423 None:intergenic 50.0%
!! AGTGGTTGGTGGTAGTTCAC+TGG - chr2_3:3969411-3969430 None:intergenic 50.0%
! GTGTCATGGATAGTGGTTGG+TGG - chr2_3:3969422-3969441 None:intergenic 50.0%
! GCAGTGTCATGGATAGTGGT+TGG - chr2_3:3969425-3969444 None:intergenic 50.0%
CTGCCACCAAAAAAGTCCGT+CGG + chr2_3:3969441-3969460 Msa0272420:intron 50.0%
!!! TCTCCGACGGACTTTTTTGG+TGG - chr2_3:3969447-3969466 None:intergenic 50.0%
GGTCAAGATGAGTGGTACAC+TGG + chr2_3:3970085-3970104 Msa0272420:intron 50.0%
AGATGAGTGGTACACTGGTG+AGG + chr2_3:3970090-3970109 Msa0272420:intron 50.0%
GATGAGTGGTACACTGGTGA+GGG + chr2_3:3970091-3970110 Msa0272420:intron 50.0%
!! CATGGTGGATTCTAGGGTGA+GGG - chr2_3:3970128-3970147 None:intergenic 50.0%
!! ACATGGTGGATTCTAGGGTG+AGG - chr2_3:3970129-3970148 None:intergenic 50.0%
CTTAGGATTCGCGGGGAATT+TGG - chr2_3:3970399-3970418 None:intergenic 50.0%
! GAGGTGGTTACTCTTGGTGT+TGG + chr2_3:3970575-3970594 Msa0272420:CDS 50.0%
!! TACTCTTGGTGTTGGCCTAG+TGG + chr2_3:3970583-3970602 Msa0272420:CDS 50.0%
!! ACTCTTGGTGTTGGCCTAGT+GGG + chr2_3:3970584-3970603 Msa0272420:CDS 50.0%
AGCCGGTGAGTGAGACAATT+AGG + chr2_3:3971028-3971047 Msa0272420:intron 50.0%
AACACCCAATCCGATCCACA+TGG + chr2_3:3971313-3971332 Msa0272420:intron 50.0%
TGTGCCATGTGGATCGGATT+GGG - chr2_3:3971320-3971339 None:intergenic 50.0%
CTCATGTGTGCCATGTGGAT+CGG - chr2_3:3971326-3971345 None:intergenic 50.0%
CTTACCTCATGTGTGCCATG+TGG - chr2_3:3971331-3971350 None:intergenic 50.0%
GTCAAATGCGGAAGAAGGAC+GGG + chr2_3:3971772-3971791 Msa0272420:CDS 50.0%
GTGTGTGTTACAGGTGGTGC+TGG + chr2_3:3967547-3967566 Msa0272420:CDS 55.0%
CAGTGGAGAAGCAGCAACCA+CGG - chr2_3:3968393-3968412 None:intergenic 55.0%
! GGTTGCTGCTTCTCCACTGA+AGG + chr2_3:3968394-3968413 Msa0272420:CDS 55.0%
CCACTCCCATCATCCTTCAG+TGG - chr2_3:3968410-3968429 None:intergenic 55.0%
!! CCACTGAAGGATGATGGGAG+TGG + chr2_3:3968407-3968426 Msa0272420:CDS 55.0%
TGAGAGGAAGGTGGAGACTC+TGG - chr2_3:3968472-3968491 None:intergenic 55.0%
CAACCCCCGTTGTTAGTGCA+AGG - chr2_3:3968816-3968835 None:intergenic 55.0%
TTCAACCACCACACGAGCGT+GGG - chr2_3:3968841-3968860 None:intergenic 55.0%
GTGGTTGAACCCACGTCCTT+TGG + chr2_3:3968852-3968871 Msa0272420:intron 55.0%
GGTTGAACCCACGTCCTTTG+GGG + chr2_3:3968854-3968873 Msa0272420:intron 55.0%
GATGAGTGGTACACCGGTGA+GGG - chr2_3:3969278-3969297 None:intergenic 55.0%
AGATGAGTGGTACACCGGTG+AGG - chr2_3:3969279-3969298 None:intergenic 55.0%
GGTGGCAGTGTCATGGATAG+TGG - chr2_3:3969429-3969448 None:intergenic 55.0%
!! GAAGAGCATCTCCTCCCACT+AGG - chr2_3:3970601-3970620 None:intergenic 55.0%
GTGTGCCATGTGGATCGGAT+TGG - chr2_3:3971321-3971340 None:intergenic 55.0%
CGATCCACATGGCACACATG+AGG + chr2_3:3971324-3971343 Msa0272420:intron 55.0%
GTGATTGGGGGTTGAGGCAA+GGG - chr2_3:3972116-3972135 None:intergenic 55.0%
TGTGATTGGGGGTTGAGGCA+AGG - chr2_3:3972117-3972136 None:intergenic 55.0%
! GGAAGGTGGAGACTCTGGAG+AGG - chr2_3:3968467-3968486 None:intergenic 60.0%
GGAAAGCGGTGAGAGGAAGG+TGG - chr2_3:3968481-3968500 None:intergenic 60.0%
TTGAACCCACGCTCGTGTGG+TGG + chr2_3:3968833-3968852 Msa0272420:intron 60.0%
GTTCAACCACCACACGAGCG+TGG - chr2_3:3968842-3968861 None:intergenic 60.0%
!! CTTGGTGTTGGCCTAGTGGG+AGG + chr2_3:3970587-3970606 Msa0272420:CDS 60.0%
GGGTTGAACCCACGCTCGTG+TGG + chr2_3:3968830-3968849 Msa0272420:intron 65.0%
GGGGGTTGAGGCAAGGGCAG+AGG - chr2_3:3972110-3972129 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 3967416 3972330 3967416 ID=Msa0272420;Name=Msa0272420
chr2_3 mRNA 3967416 3972330 3967416 ID=Msa0272420-mRNA-1;Parent=Msa0272420;Name=Msa0272420-mRNA-1;_AED=0.07;_eAED=0.07;_QI=113|1|1|1|1|1|5|520|341
chr2_3 exon 3967416 3967643 3967416 ID=Msa0272420-mRNA-1:exon:1925;Parent=Msa0272420-mRNA-1
chr2_3 exon 3967872 3968038 3967872 ID=Msa0272420-mRNA-1:exon:1926;Parent=Msa0272420-mRNA-1
chr2_3 exon 3968293 3968505 3968293 ID=Msa0272420-mRNA-1:exon:1927;Parent=Msa0272420-mRNA-1
chr2_3 exon 3970494 3970882 3970494 ID=Msa0272420-mRNA-1:exon:1928;Parent=Msa0272420-mRNA-1
chr2_3 exon 3971669 3972330 3971669 ID=Msa0272420-mRNA-1:exon:1929;Parent=Msa0272420-mRNA-1
chr2_3 five_prime_UTR 3967416 3967528 3967416 ID=Msa0272420-mRNA-1:five_prime_utr;Parent=Msa0272420-mRNA-1
chr2_3 CDS 3967529 3967643 3967529 ID=Msa0272420-mRNA-1:cds;Parent=Msa0272420-mRNA-1
chr2_3 CDS 3967872 3968038 3967872 ID=Msa0272420-mRNA-1:cds;Parent=Msa0272420-mRNA-1
chr2_3 CDS 3968293 3968505 3968293 ID=Msa0272420-mRNA-1:cds;Parent=Msa0272420-mRNA-1
chr2_3 CDS 3970494 3970882 3970494 ID=Msa0272420-mRNA-1:cds;Parent=Msa0272420-mRNA-1
chr2_3 CDS 3971669 3971810 3971669 ID=Msa0272420-mRNA-1:cds;Parent=Msa0272420-mRNA-1
chr2_3 three_prime_UTR 3971811 3972330 3971811 ID=Msa0272420-mRNA-1:three_prime_utr;Parent=Msa0272420-mRNA-1
Gene Sequence

>Msa0272420

ATGGAAAGGAGCTGCAAGGTGTGTGTTACAGGTGGTGCTGGTTATATTGGCTCTCTCCTAGTCAAGAAGCTTTTGGAAAAGGGATACACTGTCCATGCCACTCTCAGAAACTTGAAGGACGAGTCCAAAGTCAGCTTTCTGAGAGGCTTTCCACATGCAAATACAAGATTGGTGTTATTTGAAGCTGACATCTATAAACCAGATGATTTTTGGCCAGCAATTCAAGGCTGTGAATTTGTCTTCCATGTTGCCACTCCCTATCTACATCAAACTGATTCTCAGTTTAAGAGCATAGAGGAAGCAGCAGTAGCAGGTGTAAAAAGCATAGCTGAGACTTGTATTAAATCAAAAACAGCGAGAAGACTGATATACACTGGCACCGTGGTTGCTGCTTCTCCACTGAAGGATGATGGGAGTGGTTACAAAGACTTCATTGATGAAACTTGTTGGACTCCTCTCCAGAGTCTCCACCTTCCTCTCACCGCTTTCCATAAGGAGTACGCTTATTCCAAGACATTGGCAGAGAGAGAATTATTAACGAGTTATGGTAAAGATGAAAATGGAAATGGTGGAATTGAGGTGGTTACTCTTGGTGTTGGCCTAGTGGGAGGAGATGCTCTTCTCAGTTACTTACCCGCAAGTGTTGCAGTGATTATCTCTCAGCTTCAAGACAATGAAGTTGCATATCAGTCTATGAAGTTCTTAGAAGATATAGATGGAAAAATTCCACTAGTCCACATTGATGATGTTTGTGAAGCTCATATCTTTTGTGCTGAAGATTCATCTATCAATGACAGATTTTTGGTTGCAAGCTCATATGCATCATCAGCAGAGATAGCAAATTATTATCTTCAAAACTATCCAGAATTCAATTTGAAAGAGAAGTATTTGGAAGAGTCAAACAGAGCAATCAAATGGGCATCAACAAAGCTCATAGATAAAGGGTTTTCCTACAAATATGATCTCAAGATGATACTAGACGATAGTGTCAAATGCGGAAGAAGGACGGGCGATCTTAGTATATAA

Protein sequence

>Msa0272420

MERSCKVCVTGGAGYIGSLLVKKLLEKGYTVHATLRNLKDESKVSFLRGFPHANTRLVLFEADIYKPDDFWPAIQGCEFVFHVATPYLHQTDSQFKSIEEAAVAGVKSIAETCIKSKTARRLIYTGTVVAASPLKDDGSGYKDFIDETCWTPLQSLHLPLTAFHKEYAYSKTLAERELLTSYGKDENGNGGIEVVTLGVGLVGGDALLSYLPASVAVIISQLQDNEVAYQSMKFLEDIDGKIPLVHIDDVCEAHIFCAEDSSINDRFLVASSYASSAEIANYYLQNYPEFNLKEKYLEESNRAIKWASTKLIDKGFSYKYDLKMILDDSVKCGRRTGDLSI*