AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1386020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386020 MtrunA17_Chr2g0282001 91.496 341 29 0 1 341 1 341 0.0 653
Msa1386020 MtrunA17_Chr2g0281991 87.097 341 44 0 1 341 2 342 0.0 617
Msa1386020 MtrunA17_Chr2g0282011 84.164 341 54 0 1 341 2 342 0.0 572
Msa1386020 MtrunA17_Chr7g0275521 60.234 342 131 4 1 339 1 340 8.27e-146 415
Msa1386020 MtrunA17_Chr1g0155411 34.524 336 199 8 7 339 8 325 1.97e-55 184
Msa1386020 MtrunA17_Chr1g0155431 33.945 327 195 8 7 330 8 316 1.32e-54 182
Msa1386020 MtrunA17_Chr7g0245731 34.024 338 195 9 2 332 53 369 4.77e-54 181
Msa1386020 MtrunA17_Chr7g0245741 34.018 341 197 9 6 339 7 326 1.29e-53 179
Msa1386020 MtrunA17_Chr4g0048961 31.940 335 214 7 6 337 13 336 3.04e-53 178
Msa1386020 MtrunA17_Chr7g0245671 34.104 346 193 10 6 339 7 329 1.21e-52 176
Msa1386020 MtrunA17_Chr7g0245691 33.819 343 207 8 2 339 3 330 2.01e-52 176
Msa1386020 MtrunA17_Chr7g0245641 33.815 346 194 10 6 339 44 366 2.90e-52 176
Msa1386020 MtrunA17_Chr7g0245631 32.558 344 206 9 2 339 3 326 1.14e-49 169
Msa1386020 MtrunA17_Chr4g0042101 29.446 343 211 7 4 332 21 346 2.21e-43 153
Msa1386020 MtrunA17_Chr4g0010991 31.563 339 209 10 7 339 8 329 7.78e-41 145
Msa1386020 MtrunA17_Chr7g0245711 30.976 297 178 8 44 334 8 283 6.53e-38 137
Msa1386020 MtrunA17_Chr3g0077231 31.834 289 178 5 7 295 6 275 9.80e-36 132
Msa1386020 MtrunA17_Chr5g0431311 30.792 341 204 11 7 340 5 320 1.97e-35 131
Msa1386020 MtrunA17_Chr3g0106111 30.088 339 203 10 7 337 5 317 1.29e-34 129
Msa1386020 MtrunA17_Chr2g0331211 29.167 336 218 7 6 340 4 320 1.70e-34 129
Msa1386020 MtrunA17_Chr5g0423551 28.319 339 212 9 8 339 5 319 5.87e-34 127
Msa1386020 MtrunA17_Chr3g0077221 31.399 293 174 7 7 295 10 279 8.80e-33 124
Msa1386020 MtrunA17_Chr4g0039321 31.399 293 174 7 7 295 9 278 5.26e-31 119
Msa1386020 MtrunA17_Chr2g0333781 30.409 342 201 11 7 341 20 331 4.06e-29 114
Msa1386020 MtrunA17_Chr4g0039311 30.690 290 180 9 7 295 11 280 1.05e-28 113
Msa1386020 MtrunA17_Chr8g0364051 28.529 333 209 8 7 334 8 316 2.66e-28 112
Msa1386020 MtrunA17_Chr4g0001321 28.107 338 214 11 7 341 17 328 3.76e-28 112
Msa1386020 MtrunA17_Chr4g0002661 29.794 339 206 13 6 339 12 323 8.85e-28 110
Msa1386020 MtrunA17_Chr8g0363831 30.137 292 178 8 7 295 9 277 3.00e-26 106
Msa1386020 MtrunA17_Chr4g0002961 30.088 339 205 13 6 339 12 323 3.21e-25 103
Msa1386020 MtrunA17_Chr2g0291541 30.625 320 191 12 7 318 10 306 8.97e-24 100
Msa1386020 MtrunA17_Chr3g0133771 26.523 279 161 13 6 279 3 242 4.50e-13 69.3
Msa1386020 MtrunA17_Chr5g0411071 24.623 199 135 6 4 202 9 192 5.67e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386020 AT5G42800.1 32.249 338 208 7 7 341 8 327 8.91e-52 176
Msa1386020 AT1G61720.1 32.523 329 212 6 4 331 10 329 4.08e-50 171
Msa1386020 AT4G27250.1 32.036 334 206 8 8 330 14 337 5.38e-47 162
Msa1386020 AT2G45400.1 32.941 340 206 9 7 339 40 364 1.15e-46 162
Msa1386020 AT4G27250.2 32.335 334 195 10 8 330 14 327 6.28e-45 157
Msa1386020 AT2G45400.2 34.256 289 174 7 7 292 40 315 4.28e-43 152
Msa1386020 AT1G09510.1 35.034 294 162 9 7 295 8 277 6.90e-39 140
Msa1386020 AT4G35420.1 29.254 335 218 7 6 340 7 322 1.05e-36 135
Msa1386020 AT1G09500.3 33.784 296 164 9 7 295 8 278 5.70e-36 132
Msa1386020 AT1G09500.1 33.784 296 164 9 7 295 8 278 1.52e-35 132
Msa1386020 AT1G66800.1 34.589 292 152 9 7 290 8 268 3.04e-35 131
Msa1386020 AT2G45400.4 35.616 219 132 4 7 222 40 252 4.40e-35 129
Msa1386020 AT2G45400.3 31.288 326 198 10 19 339 3 307 5.57e-35 130
Msa1386020 AT5G58490.1 30.904 343 201 12 7 340 9 324 1.90e-34 129
Msa1386020 AT1G51410.1 30.201 298 189 6 2 299 4 282 1.21e-33 127
Msa1386020 AT5G19440.1 29.167 336 210 8 7 337 10 322 1.79e-33 126
Msa1386020 AT1G68540.1 29.794 339 207 9 9 339 6 321 1.82e-33 126
Msa1386020 AT1G09480.2 31.271 291 167 6 7 290 8 272 7.73e-32 122
Msa1386020 AT1G09490.1 31.922 307 173 9 7 304 8 287 1.32e-31 121
Msa1386020 AT1G09480.1 31.271 291 167 6 7 290 55 319 1.62e-31 122
Msa1386020 AT1G80820.1 30.725 345 196 12 7 341 8 319 7.47e-31 119
Msa1386020 AT1G76470.1 29.762 336 215 9 6 339 6 322 1.34e-30 119
Msa1386020 AT1G25460.1 29.254 335 212 10 9 339 6 319 8.88e-29 113
Msa1386020 AT1G15950.3 30.205 341 201 11 7 340 13 323 4.84e-28 112
Msa1386020 AT1G15950.1 30.205 341 201 11 7 340 13 323 4.84e-28 112
Msa1386020 AT2G02400.1 30.000 330 197 12 7 331 6 306 9.30e-28 110
Msa1386020 AT1G15950.2 30.094 319 187 10 7 318 13 302 7.73e-27 108
Msa1386020 AT1G80820.2 31.081 296 165 10 7 295 8 271 9.78e-27 107
Msa1386020 AT1G15950.4 30.537 298 174 9 7 300 13 281 1.60e-25 104
Msa1386020 AT1G15950.6 30.717 293 170 9 7 295 13 276 4.04e-25 102
Msa1386020 AT1G15950.5 30.272 294 172 9 7 296 13 277 1.34e-24 101
Msa1386020 AT2G33590.1 28.657 335 208 14 6 335 8 316 3.93e-24 101
Msa1386020 AT1G09500.2 30.303 264 152 9 39 295 6 244 1.10e-20 90.9
Msa1386020 AT2G33600.1 27.711 332 215 11 6 335 8 316 1.77e-20 90.9
Msa1386020 AT1G09490.2 27.957 279 157 10 39 304 9 256 8.82e-17 80.1
Msa1386020 AT4G33360.2 25.524 286 151 11 4 275 12 249 1.88e-14 73.6
Msa1386020 AT4G33360.1 24.476 286 154 9 4 275 12 249 2.48e-14 73.6
Msa1386020 AT4G33360.3 24.648 284 152 9 6 275 2 237 3.47e-14 72.8
Msa1386020 AT2G23910.2 22.615 283 191 10 4 285 8 263 6.77e-13 68.6
Msa1386020 AT2G23910.1 22.615 283 191 10 4 285 8 263 6.89e-13 68.9
Msa1386020 AT2G23910.3 22.615 283 191 10 4 285 8 263 7.47e-13 68.6
Msa1386020 AT4G30470.1 25.000 244 153 10 4 238 8 230 1.88e-12 67.4

Find 93 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGCACAAAAGTTTATATT+AGG 0.153694 tig0020780:+74519 Msa1386020:three_prime_UTR
GTCAACCTTCATTTGGTTTC+CGG 0.204199 tig0020780:+74136 Msa1386020:three_prime_UTR
TTCTCTTTCAAATTGAATTC+TGG 0.212502 tig0020780:-73136 None:intergenic
TAGATTCTCGTGATTATATA+TGG 0.284496 tig0020780:+74416 Msa1386020:three_prime_UTR
AATGCATTATCTAGTAAATA+TGG 0.292838 tig0020780:-69708 None:intergenic
TCAACAAAGCTCATAGATAA+AGG 0.298417 tig0020780:+73982 Msa1386020:CDS
TTAGTATTACGTTGTTGATA+TGG 0.299781 tig0020780:+74170 Msa1386020:three_prime_UTR
TCTCCTAGTCAAGAAGCTTT+TGG 0.309271 tig0020780:+69859 Msa1386020:CDS
ACAGGTGGTGCTGGTTATAT+TGG 0.319946 tig0020780:+69833 Msa1386020:CDS
AATTCACAGCCTTGAATTGC+TGG 0.321732 tig0020780:-70246 None:intergenic
AGCTGCAAGGTGTGTGTTAC+AGG 0.325911 tig0020780:+69815 Msa1386020:CDS
GTGCACAAAAGTTTATATTA+GGG 0.331694 tig0020780:+74520 Msa1386020:three_prime_UTR
ACAAATCACATATCTCTCTT+AGG 0.341922 tig0020780:-74442 None:intergenic
CATCTTGAGATCATATTTGT+AGG 0.350926 tig0020780:-74010 None:intergenic
AGTTATGGTAAAGATGAAAA+TGG 0.352631 tig0020780:+72815 Msa1386020:CDS
TGTGTTATACTAATTGATTA+TGG 0.353689 tig0020780:+74261 Msa1386020:three_prime_UTR
ACTTCATTGATGAAACTTGT+TGG 0.365623 tig0020780:+70714 Msa1386020:CDS
AGAGAATTATTAACGAGTTA+TGG 0.366349 tig0020780:+72800 Msa1386020:CDS
TATATTGGTCAACCTTCATT+TGG 0.382410 tig0020780:+74129 Msa1386020:three_prime_UTR
ATAATCACTGCAACACTTGC+GGG 0.395620 tig0020780:-72908 None:intergenic
AGAATCAGTTTGATGTAGAT+AGG 0.396421 tig0020780:-70289 None:intergenic
ACGAGAATCTAGAATGTGAT+TGG 0.413209 tig0020780:-74404 None:intergenic
GCCTCTCAGAAAGCTGACTT+TGG 0.417578 tig0020780:-70157 None:intergenic
TCCTCTCACCGCTTTCCATA+AGG 0.418685 tig0020780:+70760 Msa1386020:CDS
ACTCTTGGTGTTGGCCTAGT+GGG 0.433402 tig0020780:+72860 Msa1386020:CDS
CGAGAATCTAGAATGTGATT+GGG 0.440617 tig0020780:-74403 None:intergenic
TCCACATGCAAATACAAGAT+TGG 0.441027 tig0020780:+70182 Msa1386020:CDS
TATATAATGATGGATCATCT+TGG 0.446140 tig0020780:+74080 Msa1386020:exon
AGTCAAACAGAGCAATCAAA+TGG 0.449477 tig0020780:+73956 Msa1386020:CDS
CAACAAAGCTCATAGATAAA+GGG 0.450243 tig0020780:+73983 Msa1386020:CDS
TTCTCTCTCTGCCAATGTCT+TGG 0.450541 tig0020780:-72783 None:intergenic
ATATAATGATGGATCATCTT+GGG 0.453225 tig0020780:+74081 Msa1386020:exon
TCTACATCAAACTGATTCTC+AGG 0.459043 tig0020780:+70293 Msa1386020:CDS
GAGGTGGTTACTCTTGGTGT+TGG 0.474061 tig0020780:+72851 Msa1386020:CDS
TGAGAGGAAGGTGGAGACTC+TGG 0.474386 tig0020780:-70745 None:intergenic
GCTTCTCCACTGAAGGATGA+TGG 0.480245 tig0020780:+70677 Msa1386020:CDS
GGAATTGAGGTGGTTACTCT+TGG 0.482358 tig0020780:+72845 Msa1386020:CDS
AATACTAATATCCACTTGTC+CGG 0.485305 tig0020780:-74155 None:intergenic
AAGTTCTTAGAAGATATAGA+TGG 0.488977 tig0020780:+72971 Msa1386020:CDS
GGTAAAGATGAAAATGGAAA+TGG 0.489339 tig0020780:+72821 Msa1386020:CDS
ATAGAGGAAGCAGCAGTAGC+AGG 0.492362 tig0020780:+70578 Msa1386020:CDS
AGAGACCCCTCATATTTACT+AGG 0.493361 tig0020780:+69679 None:intergenic
GTCAAATGCGGAAGAAGGAC+GGG 0.508730 tig0020780:+74048 Msa1386020:CDS
AGTTAGATTATTATCAGTGA+TGG 0.510789 tig0020780:+69787 Msa1386020:exon
TTTCCAAAAGCTTCTTGACT+AGG 0.510906 tig0020780:-69862 None:intergenic
GTGTGTGTTACAGGTGGTGC+TGG 0.512366 tig0020780:+69824 Msa1386020:CDS
TGTCAAATGCGGAAGAAGGA+CGG 0.517919 tig0020780:+74047 Msa1386020:CDS
CTTCTCCACTGAAGGATGAT+GGG 0.521350 tig0020780:+70678 Msa1386020:CDS
GGAAAGCGGTGAGAGGAAGG+TGG 0.525033 tig0020780:-70754 None:intergenic
AGACCATCGTTGATTACCTA+CGG 0.530299 tig0020780:-74200 None:intergenic
ATAGTGTCAAATGCGGAAGA+AGG 0.537899 tig0020780:+74043 Msa1386020:CDS
TACTCTTGGTGTTGGCCTAG+TGG 0.540652 tig0020780:+72859 Msa1386020:CDS
GTCAAACAGAGCAATCAAAT+GGG 0.548805 tig0020780:+73957 Msa1386020:CDS
TCATTTGGTTTCCGGACAAG+TGG 0.553695 tig0020780:+74144 Msa1386020:three_prime_UTR
AAAGATGAAAATGGAAATGG+TGG 0.554971 tig0020780:+72824 Msa1386020:CDS
GAATCAGTTTGATGTAGATA+GGG 0.556532 tig0020780:-70288 None:intergenic
GCGATCTTAGTATATAATGA+TGG 0.557596 tig0020780:+74070 Msa1386020:exon
GATTATTATCAGTGATGGAA+AGG 0.557631 tig0020780:+69792 Msa1386020:exon
GGTTGCTGCTTCTCCACTGA+AGG 0.558373 tig0020780:+70670 Msa1386020:CDS
TATGGAAAGCGGTGAGAGGA+AGG 0.562621 tig0020780:-70757 None:intergenic
ACATCATCAATGTGGACTAG+TGG 0.564824 tig0020780:-73001 None:intergenic
ACCAATCTTGTATTTGCATG+TGG 0.567821 tig0020780:-70183 None:intergenic
CTTGGTGTTGGCCTAGTGGG+AGG 0.579025 tig0020780:+72863 Msa1386020:CDS
CTTGTCCGGAAACCAAATGA+AGG 0.581533 tig0020780:-74141 None:intergenic
GATAATCACTGCAACACTTG+CGG 0.586260 tig0020780:-72909 None:intergenic
GAAGAGCATCTCCTCCCACT+AGG 0.587729 tig0020780:-72874 None:intergenic
AATACTCAAGTTTCTGAGAG+TGG 0.592377 tig0020780:-69903 None:intergenic
GAGAATCTAGAATGTGATTG+GGG 0.592559 tig0020780:-74402 None:intergenic
AGTTTGATGTAGATAGGGAG+TGG 0.593081 tig0020780:-70283 None:intergenic
AAATGGAAATGGTGGAATTG+AGG 0.596604 tig0020780:+72832 Msa1386020:CDS
GTACGCTTATTCCAAGACAT+TGG 0.600674 tig0020780:+72772 Msa1386020:CDS
AGTATTTACCTTATGGAAAG+CGG 0.602744 tig0020780:-70768 None:intergenic
ACCTTATGGAAAGCGGTGAG+AGG 0.612095 tig0020780:-70761 None:intergenic
CCACTGAAGGATGATGGGAG+TGG 0.616498 tig0020780:+70683 Msa1386020:CDS
GGAAGGTGGAGACTCTGGAG+AGG 0.622635 tig0020780:-70740 None:intergenic
AGGACAGTTTAAGAGCATAG+AGG 0.626813 tig0020780:+70562 Msa1386020:intron
TCAAGTTTCTGAGAGTGGCA+TGG 0.630524 tig0020780:-69898 None:intergenic
CAGTGGAGAAGCAGCAACCA+CGG 0.636125 tig0020780:-70666 None:intergenic
TGCAAGGTGTGTGTTACAGG+TGG 0.636996 tig0020780:+69818 Msa1386020:CDS
CCACTCCCATCATCCTTCAG+TGG 0.640324 tig0020780:-70683 None:intergenic
GCGAGAAGACTGATATACAC+TGG 0.641046 tig0020780:+70641 Msa1386020:CDS
GTAGATAGGGAGTGGCAACA+TGG 0.645401 tig0020780:-70275 None:intergenic
GACCCCTCATATTTACTAGG+TGG 0.648898 tig0020780:+69682 None:intergenic
TTGATATGGAGACACTCCGT+AGG 0.650270 tig0020780:+74184 Msa1386020:three_prime_UTR
AGTGATGGAAAGGAGCTGCA+AGG 0.651284 tig0020780:+69802 Msa1386020:exon
ATATGTTAGATCATTGTGAG+TGG 0.657002 tig0020780:+69761 Msa1386020:five_prime_UTR
TCCAAAGTCAGCTTTCTGAG+AGG 0.659613 tig0020780:+70156 Msa1386020:CDS
TGGAAATGGTGGAATTGAGG+TGG 0.673716 tig0020780:+72835 Msa1386020:CDS
CTTCACAAACATCATCAATG+TGG 0.701450 tig0020780:-73009 None:intergenic
AGAATCTAGAATGTGATTGG+GGG 0.723264 tig0020780:-74401 None:intergenic
ACTCCGTAGGTAATCAACGA+TGG 0.726822 tig0020780:+74197 Msa1386020:three_prime_UTR
CTAGACGATAGTGTCAAATG+CGG 0.728283 tig0020780:+74036 Msa1386020:CDS
ACTGATATACACTGGCACCG+TGG 0.763689 tig0020780:+70649 Msa1386020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTAATTAAATATAAA+CGG + tig0020780:70051-70070 Msa1386020:intron 0.0%
!! CAAATAATTAAAAGAATAAA+AGG - tig0020780:71420-71439 None:intergenic 10.0%
!! TAAATGGTAAAATAAAATTT+AGG + tig0020780:71907-71926 Msa1386020:intron 10.0%
!! AAATGGTAAAATAAAATTTA+GGG + tig0020780:71908-71927 Msa1386020:intron 10.0%
!! TGTTAAAAAAATCATTAAAT+GGG - tig0020780:72180-72199 None:intergenic 10.0%
!! TCTAAATAAAAAAAAACAAT+AGG + tig0020780:74220-74239 Msa1386020:three_prime_UTR 10.0%
!! TAAAAAAATAAATAAGGTAA+TGG + tig0020780:74291-74310 Msa1386020:three_prime_UTR 10.0%
!! ACTAAAAGAATTGAAAAAAA+TGG - tig0020780:69984-70003 None:intergenic 15.0%
!! AAGAGTAATAATCAATATTT+GGG - tig0020780:70326-70345 None:intergenic 15.0%
!! AAAGAGTAATAATCAATATT+TGG - tig0020780:70327-70346 None:intergenic 15.0%
!! TATATATAGTATTTACCTTA+TGG - tig0020780:70778-70797 None:intergenic 15.0%
!!! TTAAAGGTTAAATATGTTTT+TGG - tig0020780:70879-70898 None:intergenic 15.0%
!! TTCTATAAAAAAAAAACGTT+TGG - tig0020780:70962-70981 None:intergenic 15.0%
!! ATAGTCACAAAATATTAATA+GGG - tig0020780:71490-71509 None:intergenic 15.0%
!! TATAGTCACAAAATATTAAT+AGG - tig0020780:71491-71510 None:intergenic 15.0%
!! GAAAATTCAAAGTTATAATA+GGG + tig0020780:71782-71801 Msa1386020:intron 15.0%
!!! TTTTCAACAAAATAATGATA+AGG + tig0020780:71814-71833 Msa1386020:intron 15.0%
!! CTGTTAAAAAAATCATTAAA+TGG - tig0020780:72181-72200 None:intergenic 15.0%
!! AAAAAAAAAAACTTTAGACA+TGG - tig0020780:72422-72441 None:intergenic 15.0%
!!! GTCTAAAGTTTTTTTTTTTT+TGG + tig0020780:72423-72442 Msa1386020:intron 15.0%
!!! TAAAGTTTTTTTTTTTTTGG+AGG + tig0020780:72426-72445 Msa1386020:intron 15.0%
!! TAAAGTTTACAAATAGTTTA+TGG + tig0020780:73338-73357 Msa1386020:intron 15.0%
!! CTTGCATAAAAAAATAAATA+AGG + tig0020780:74285-74304 Msa1386020:three_prime_UTR 15.0%
!! AATGCATTATCTAGTAAATA+TGG - tig0020780:69711-69730 None:intergenic 20.0%
!! AAAGAATTGAAAAAAATGGA+TGG - tig0020780:69980-69999 None:intergenic 20.0%
!!! AATTCATTTATTGATTTCAG+AGG + tig0020780:70128-70147 Msa1386020:intron 20.0%
!! ATGGCTAATGATAAAATTAA+AGG - tig0020780:70895-70914 None:intergenic 20.0%
!!! TTTTTTTTTGGTAGATGTTT+GGG - tig0020780:70931-70950 None:intergenic 20.0%
!!! TTTTTTTTTTGGTAGATGTT+TGG - tig0020780:70932-70951 None:intergenic 20.0%
!! AAACATCTACCAAAAAAAAA+AGG + tig0020780:70931-70950 Msa1386020:intron 20.0%
!! AACATCTACCAAAAAAAAAA+GGG + tig0020780:70932-70951 Msa1386020:intron 20.0%
!! TGAAGAAAAAAAAAAGTTTG+TGG - tig0020780:71177-71196 None:intergenic 20.0%
!! AAAAAGATAGAAATATCAAG+CGG - tig0020780:71214-71233 None:intergenic 20.0%
!!! ATTTTCCTATGAAATCTTTA+GGG - tig0020780:71768-71787 None:intergenic 20.0%
!!! AATTTTCCTATGAAATCTTT+AGG - tig0020780:71769-71788 None:intergenic 20.0%
!! GGAAAATTCAAAGTTATAAT+AGG + tig0020780:71781-71800 Msa1386020:intron 20.0%
!! GTTATTCATAAGTAATTTCT+TGG + tig0020780:72087-72106 Msa1386020:intron 20.0%
!!! ATTTTTTTAACAGTCTAGTT+TGG + tig0020780:72188-72207 Msa1386020:intron 20.0%
!!! AAATATCGAATTGTAACTTT+TGG + tig0020780:72620-72639 Msa1386020:intron 20.0%
!! ATACTATATGTTGTATAAGT+TGG - tig0020780:73188-73207 None:intergenic 20.0%
!! TGTTATATATGGATGTTAAA+TGG + tig0020780:73667-73686 Msa1386020:intron 20.0%
!!! AATGGAGGTATAAAAATTAA+AGG + tig0020780:73685-73704 Msa1386020:intron 20.0%
!! GCAAGTTAAAAAATGTATAT+TGG + tig0020780:74114-74133 Msa1386020:three_prime_UTR 20.0%
!! TGTGTTATACTAATTGATTA+TGG + tig0020780:74261-74280 Msa1386020:three_prime_UTR 20.0%
! AGTTAGATTATTATCAGTGA+TGG + tig0020780:69787-69806 Msa1386020:exon 25.0%
! AGAAAAAAAAAATGCAGAGA+GGG - tig0020780:69947-69966 None:intergenic 25.0%
! AAGAAAAAAAAAATGCAGAG+AGG - tig0020780:69948-69967 None:intergenic 25.0%
!! TCTATAAACCAGATGATTTT+TGG + tig0020780:70223-70242 Msa1386020:CDS 25.0%
!! ATTACTCTTTTCTTTCCTTT+TGG + tig0020780:70337-70356 Msa1386020:intron 25.0%
!! ATTTCAAGTACATAACCAAA+AGG - tig0020780:70355-70374 None:intergenic 25.0%
! ACTTTCTCACACAATAATAA+TGG + tig0020780:70804-70823 Msa1386020:intron 25.0%
! TTATCATTAGCCATACATAA+AGG + tig0020780:70901-70920 Msa1386020:intron 25.0%
! TATCATTAGCCATACATAAA+GGG + tig0020780:70902-70921 Msa1386020:intron 25.0%
! TAGAATACGTTTATGTGAAT+TGG + tig0020780:70977-70996 Msa1386020:intron 25.0%
! AGAATACGTTTATGTGAATT+GGG + tig0020780:70978-70997 Msa1386020:intron 25.0%
!!! CTTTTTTTTTTCTTCAGAAG+AGG + tig0020780:71181-71200 Msa1386020:intron 25.0%
! TGTTAACACATCCTAAATTA+AGG + tig0020780:71273-71292 Msa1386020:intron 25.0%
! GTTAACACATCCTAAATTAA+GGG + tig0020780:71274-71293 Msa1386020:intron 25.0%
! GTATGTTTAACCCTTAATTT+AGG - tig0020780:71287-71306 None:intergenic 25.0%
! ATTAAGGGTTAAACATACAA+AGG + tig0020780:71289-71308 Msa1386020:intron 25.0%
! TTAAGGGTTAAACATACAAA+GGG + tig0020780:71290-71309 Msa1386020:intron 25.0%
!! TGACTAATGACATTAGTTTA+CGG + tig0020780:71328-71347 Msa1386020:intron 25.0%
! ACACAACATGTTATTATTCT+AGG + tig0020780:71510-71529 Msa1386020:intron 25.0%
!! ATGTTATTATTCTAGGTTGA+GGG + tig0020780:71517-71536 Msa1386020:intron 25.0%
! TTTGTGGGAAGAAAAAAAAT+GGG - tig0020780:72129-72148 None:intergenic 25.0%
! ATTTGTGGGAAGAAAAAAAA+TGG - tig0020780:72130-72149 None:intergenic 25.0%
! TATGTGCTTATTTGATCTAA+GGG + tig0020780:72340-72359 Msa1386020:intron 25.0%
! AAAAAAAACTTTAGACATGG+TGG - tig0020780:72419-72438 None:intergenic 25.0%
! CACATATTGGATGTAAATAT+AGG - tig0020780:72456-72475 None:intergenic 25.0%
! CTATATTTACATCCAATATG+TGG + tig0020780:72454-72473 Msa1386020:intron 25.0%
!!! TGATTTCAAGTTTAATATCG+AGG - tig0020780:72494-72513 None:intergenic 25.0%
! AAATCAATATGACACATCTA+TGG + tig0020780:72581-72600 Msa1386020:intron 25.0%
! AGAGAATTATTAACGAGTTA+TGG + tig0020780:72800-72819 Msa1386020:CDS 25.0%
! AGTTATGGTAAAGATGAAAA+TGG + tig0020780:72815-72834 Msa1386020:CDS 25.0%
! AAGTTCTTAGAAGATATAGA+TGG + tig0020780:72971-72990 Msa1386020:CDS 25.0%
!! ATCTATCAATGACAGATTTT+TGG + tig0020780:73057-73076 Msa1386020:CDS 25.0%
! TTCTCTTTCAAATTGAATTC+TGG - tig0020780:73139-73158 None:intergenic 25.0%
! TATAAGAGATTTCTCTTTGT+AGG - tig0020780:73234-73253 None:intergenic 25.0%
! TCTTTAACATGTGTCATAAA+AGG + tig0020780:73470-73489 Msa1386020:intron 25.0%
! CATATATAACAAAGCATGAT+TGG - tig0020780:73658-73677 None:intergenic 25.0%
!! CAATCATGCTTTGTTATATA+TGG + tig0020780:73656-73675 Msa1386020:intron 25.0%
! TATATATGGATGTTAAATGG+AGG + tig0020780:73670-73689 Msa1386020:intron 25.0%
! AAATCTTAGTATGATTCACA+AGG + tig0020780:73851-73870 Msa1386020:intron 25.0%
!! AATATTTGCCATCTGATTTT+AGG + tig0020780:73923-73942 Msa1386020:intron 25.0%
!!! TATATAATGATGGATCATCT+TGG + tig0020780:74080-74099 Msa1386020:exon 25.0%
!!! ATATAATGATGGATCATCTT+GGG + tig0020780:74081-74100 Msa1386020:exon 25.0%
! TTAGTATTACGTTGTTGATA+TGG + tig0020780:74170-74189 Msa1386020:three_prime_UTR 25.0%
! TAGATTCTCGTGATTATATA+TGG + tig0020780:74416-74435 Msa1386020:three_prime_UTR 25.0%
! AGCTAAAATACCAAAAAGAT+AGG - tig0020780:74468-74487 None:intergenic 25.0%
! TGTGCACAAAAGTTTATATT+AGG + tig0020780:74519-74538 Msa1386020:three_prime_UTR 25.0%
! GTGCACAAAAGTTTATATTA+GGG + tig0020780:74520-74539 Msa1386020:three_prime_UTR 25.0%
!!! TGTTTTTTCACTATTGTGTG+TGG + tig0020780:69730-69749 Msa1386020:five_prime_UTR 30.0%
ATATGTTAGATCATTGTGAG+TGG + tig0020780:69761-69780 Msa1386020:five_prime_UTR 30.0%
! GATTATTATCAGTGATGGAA+AGG + tig0020780:69792-69811 Msa1386020:exon 30.0%
GAATTGAAAAAAATGGATGG+TGG - tig0020780:69977-69996 None:intergenic 30.0%
GAATCAGTTTGATGTAGATA+GGG - tig0020780:70291-70310 None:intergenic 30.0%
AGAATCAGTTTGATGTAGAT+AGG - tig0020780:70292-70311 None:intergenic 30.0%
AGCACTCACAACAATAAAAT+TGG - tig0020780:70384-70403 None:intergenic 30.0%
TCGTTGATATAAGTGAATGT+TGG + tig0020780:70538-70557 Msa1386020:intron 30.0%
TGATATAAGTGAATGTTGGT+AGG + tig0020780:70542-70561 Msa1386020:intron 30.0%
ACTTCATTGATGAAACTTGT+TGG + tig0020780:70714-70733 Msa1386020:CDS 30.0%
AGTATTTACCTTATGGAAAG+CGG - tig0020780:70771-70790 None:intergenic 30.0%
TCTACCAAAAAAAAAAGGGT+CGG + tig0020780:70936-70955 Msa1386020:intron 30.0%
CTAACAATTGTACGTAATGA+CGG + tig0020780:71048-71067 Msa1386020:intron 30.0%
ATATTAGTTCATATCCCCAA+AGG - tig0020780:71147-71166 None:intergenic 30.0%
TAAACATACAAAGGGTAAGT+AGG + tig0020780:71298-71317 Msa1386020:intron 30.0%
CATGTTATTATTCTAGGTTG+AGG + tig0020780:71516-71535 Msa1386020:intron 30.0%
CAACATGGTTGTAGTTAAAA+AGG + tig0020780:72012-72031 Msa1386020:intron 30.0%
ATAAGTAATTTCTTGGCTGA+TGG + tig0020780:72094-72113 Msa1386020:intron 30.0%
! TTCTTCTGTGGATAATTTGT+GGG - tig0020780:72144-72163 None:intergenic 30.0%
ATTCTTCTGTGGATAATTTG+TGG - tig0020780:72145-72164 None:intergenic 30.0%
!! TGGTTTTCTAAGAATGTTTC+TGG + tig0020780:72208-72227 Msa1386020:intron 30.0%
AAAAAGAAGCTAATCATGTG+TGG + tig0020780:72299-72318 Msa1386020:intron 30.0%
GTATGTGCTTATTTGATCTA+AGG + tig0020780:72339-72358 Msa1386020:intron 30.0%
TAGTGGTAAAAACCACATAT+TGG - tig0020780:72469-72488 None:intergenic 30.0%
AGTTTAATATCGAGGATTAG+TGG - tig0020780:72486-72505 None:intergenic 30.0%
! AACTACCAAATCGTAACTTT+TGG + tig0020780:72556-72575 Msa1386020:intron 30.0%
! TTTTGCCAAAAGTTACGATT+TGG - tig0020780:72564-72583 None:intergenic 30.0%
GCTCGATATATAACAAATCA+CGG + tig0020780:72732-72751 Msa1386020:intron 30.0%
GGTAAAGATGAAAATGGAAA+TGG + tig0020780:72821-72840 Msa1386020:CDS 30.0%
AAAGATGAAAATGGAAATGG+TGG + tig0020780:72824-72843 Msa1386020:CDS 30.0%
! CTGTCATAAACTTTTTACGT+TGG + tig0020780:73515-73534 Msa1386020:intron 30.0%
! ATAAGTACCCATCTTTTTAG+AGG - tig0020780:73545-73564 None:intergenic 30.0%
ATATAAGACCCTACTAAAGA+TGG + tig0020780:73801-73820 Msa1386020:intron 30.0%
CAATCTAACCATCTTTAGTA+GGG - tig0020780:73812-73831 None:intergenic 30.0%
TCAATCTAACCATCTTTAGT+AGG - tig0020780:73813-73832 None:intergenic 30.0%
TCCAAATACCTAAAATCAGA+TGG - tig0020780:73934-73953 None:intergenic 30.0%
TCAACAAAGCTCATAGATAA+AGG + tig0020780:73982-74001 Msa1386020:CDS 30.0%
CAACAAAGCTCATAGATAAA+GGG + tig0020780:73983-74002 Msa1386020:CDS 30.0%
CATCTTGAGATCATATTTGT+AGG - tig0020780:74013-74032 None:intergenic 30.0%
GCGATCTTAGTATATAATGA+TGG + tig0020780:74070-74089 Msa1386020:exon 30.0%
TATATTGGTCAACCTTCATT+TGG + tig0020780:74129-74148 Msa1386020:three_prime_UTR 30.0%
AATACTAATATCCACTTGTC+CGG - tig0020780:74158-74177 None:intergenic 30.0%
CGAAAAAACACAAACATCTT+GGG - tig0020780:74324-74343 None:intergenic 30.0%
ACGAAAAAACACAAACATCT+TGG - tig0020780:74325-74344 None:intergenic 30.0%
ACAAATCACATATCTCTCTT+AGG - tig0020780:74445-74464 None:intergenic 30.0%
!! TGTGATTTGTCCTATCTTTT+TGG + tig0020780:74455-74474 Msa1386020:three_prime_UTR 30.0%
!! TTATATTAGGGTGCTCTTTT+TGG + tig0020780:74532-74551 Msa1386020:three_prime_UTR 30.0%
!!! GTGCTCTTTTTGGTTTATTA+GGG + tig0020780:74542-74561 Msa1386020:three_prime_UTR 30.0%
TTTCCAAAAGCTTCTTGACT+AGG - tig0020780:69865-69884 None:intergenic 35.0%
!! AGTCAAGAAGCTTTTGGAAA+AGG + tig0020780:69865-69884 Msa1386020:CDS 35.0%
!! GTCAAGAAGCTTTTGGAAAA+GGG + tig0020780:69866-69885 Msa1386020:CDS 35.0%
! AATACTCAAGTTTCTGAGAG+TGG - tig0020780:69906-69925 None:intergenic 35.0%
AAAAAATGCAGAGAGGGAAA+GGG - tig0020780:69941-69960 None:intergenic 35.0%
AAAAAAATGCAGAGAGGGAA+AGG - tig0020780:69942-69961 None:intergenic 35.0%
TCCACATGCAAATACAAGAT+TGG + tig0020780:70182-70201 Msa1386020:CDS 35.0%
ACCAATCTTGTATTTGCATG+TGG - tig0020780:70186-70205 None:intergenic 35.0%
! TCTACATCAAACTGATTCTC+AGG + tig0020780:70293-70312 Msa1386020:CDS 35.0%
GTTGTGCATAGTAAAATAGC+TGG - tig0020780:71599-71618 None:intergenic 35.0%
TTGTAAATGCAATTCTCCGA+CGG - tig0020780:71736-71755 None:intergenic 35.0%
ACACACCCTAAAGATTTCAT+AGG + tig0020780:71760-71779 Msa1386020:intron 35.0%
TGCGAGTAAAATCAATGACA+GGG - tig0020780:71880-71899 None:intergenic 35.0%
TTGCGAGTAAAATCAATGAC+AGG - tig0020780:71881-71900 None:intergenic 35.0%
!!! TGTCATTGATTTTACTCGCA+AGG + tig0020780:71880-71899 Msa1386020:intron 35.0%
! TTTAGGGCTCTTCTAAATCT+TGG + tig0020780:71924-71943 Msa1386020:intron 35.0%
GTGACTTAAACAATGCTTTG+AGG + tig0020780:71988-72007 Msa1386020:intron 35.0%
! ACTGCTTTAGTTCATTGTTC+TGG - tig0020780:72059-72078 None:intergenic 35.0%
AGAACAATGAACTAAAGCAG+TGG + tig0020780:72058-72077 Msa1386020:intron 35.0%
! GTTTCAGATTGATTCTTCTG+TGG - tig0020780:72156-72175 None:intergenic 35.0%
! GTGAACATTTGAAGCATTCA+TGG + tig0020780:72230-72249 Msa1386020:intron 35.0%
AGCATTCATGGATATTGTTC+AGG + tig0020780:72242-72261 Msa1386020:intron 35.0%
!! TTTAGACATGGTGGATTCTA+GGG - tig0020780:72410-72429 None:intergenic 35.0%
! AAATGGAAATGGTGGAATTG+AGG + tig0020780:72832-72851 Msa1386020:CDS 35.0%
CTTCACAAACATCATCAATG+TGG - tig0020780:73012-73031 None:intergenic 35.0%
!! CAGATTTGATAATGTCAAGC+CGG + tig0020780:73287-73306 Msa1386020:intron 35.0%
AAAAATTACATCGATCCGAG+TGG + tig0020780:73738-73757 Msa1386020:intron 35.0%
CTTAGTATGATTCACAAGGT+TGG + tig0020780:73855-73874 Msa1386020:intron 35.0%
!! GCCATCTGATTTTAGGTATT+TGG + tig0020780:73930-73949 Msa1386020:intron 35.0%
AGTCAAACAGAGCAATCAAA+TGG + tig0020780:73956-73975 Msa1386020:CDS 35.0%
GTCAAACAGAGCAATCAAAT+GGG + tig0020780:73957-73976 Msa1386020:CDS 35.0%
! AGAATCTAGAATGTGATTGG+GGG - tig0020780:74404-74423 None:intergenic 35.0%
! GAGAATCTAGAATGTGATTG+GGG - tig0020780:74405-74424 None:intergenic 35.0%
! CGAGAATCTAGAATGTGATT+GGG - tig0020780:74406-74425 None:intergenic 35.0%
! ACGAGAATCTAGAATGTGAT+TGG - tig0020780:74407-74426 None:intergenic 35.0%
!!! TTGGTATTTTAGCTACAGCA+AGG + tig0020780:74474-74493 Msa1386020:three_prime_UTR 35.0%
!!! GGTGCTCTTTTTGGTTTATT+AGG + tig0020780:74541-74560 Msa1386020:three_prime_UTR 35.0%
! TCTCCTAGTCAAGAAGCTTT+TGG + tig0020780:69859-69878 Msa1386020:CDS 40.0%
GCACTGCATATAACAACTGT+TGG - tig0020780:70078-70097 None:intergenic 40.0%
ATTGCTGGCCAAAAATCATC+TGG - tig0020780:70234-70253 None:intergenic 40.0%
!!! GATTTTTGGCCAGCAATTCA+AGG + tig0020780:70237-70256 Msa1386020:CDS 40.0%
AATTCACAGCCTTGAATTGC+TGG - tig0020780:70249-70268 None:intergenic 40.0%
AGTTTGATGTAGATAGGGAG+TGG - tig0020780:70286-70305 None:intergenic 40.0%
! AGGACAGTTTAAGAGCATAG+AGG + tig0020780:70562-70581 Msa1386020:intron 40.0%
!!! TTGGCCGACCCTTTTTTTTT+TGG - tig0020780:70943-70962 None:intergenic 40.0%
AGTGATCCTTGCACTAACAA+CGG + tig0020780:71083-71102 Msa1386020:intron 40.0%
GATCTAATGGTCAAGATGAG+TGG - tig0020780:71568-71587 None:intergenic 40.0%
AGTAAAATAGCTGGATGCGT+TGG - tig0020780:71590-71609 None:intergenic 40.0%
!!! AATTCTCCGACGGACTTTTT+TGG - tig0020780:71726-71745 None:intergenic 40.0%
AATCAATGACAGGGACATGA+TGG - tig0020780:71871-71890 None:intergenic 40.0%
! TTACTCGCAAGGTGCTTAAA+TGG + tig0020780:71891-71910 Msa1386020:intron 40.0%
!! ACAATGCTTTGAGGTCAACA+TGG + tig0020780:71997-72016 Msa1386020:intron 40.0%
CAATGAACTAAAGCAGTGGA+AGG + tig0020780:72062-72081 Msa1386020:intron 40.0%
!! CTTTAGACATGGTGGATTCT+AGG - tig0020780:72411-72430 None:intergenic 40.0%
ATGTGTATCTTAGGATTCGC+GGG - tig0020780:72683-72702 None:intergenic 40.0%
CATGTGTATCTTAGGATTCG+CGG - tig0020780:72684-72703 None:intergenic 40.0%
CGAATCCTAAGATACACATG+TGG + tig0020780:72684-72703 Msa1386020:intron 40.0%
GAACACCACATGTGTATCTT+AGG - tig0020780:72692-72711 None:intergenic 40.0%
ATCACGGTGAATCTCTTTGT+AGG + tig0020780:72748-72767 Msa1386020:intron 40.0%
GTACGCTTATTCCAAGACAT+TGG + tig0020780:72772-72791 Msa1386020:CDS 40.0%
ATAATCACTGCAACACTTGC+GGG - tig0020780:72911-72930 None:intergenic 40.0%
GATAATCACTGCAACACTTG+CGG - tig0020780:72912-72931 None:intergenic 40.0%
!! ACATCATCAATGTGGACTAG+TGG - tig0020780:73004-73023 None:intergenic 40.0%
! TTGGTCTGCCTCTAAAAAGA+TGG + tig0020780:73534-73553 Msa1386020:intron 40.0%
! TGGTCTGCCTCTAAAAAGAT+GGG + tig0020780:73535-73554 Msa1386020:intron 40.0%
CCACAAAGTCAAATTCCACT+CGG - tig0020780:73756-73775 None:intergenic 40.0%
CTAGACGATAGTGTCAAATG+CGG + tig0020780:74036-74055 Msa1386020:CDS 40.0%
ATAGTGTCAAATGCGGAAGA+AGG + tig0020780:74043-74062 Msa1386020:CDS 40.0%
! GTCAACCTTCATTTGGTTTC+CGG + tig0020780:74136-74155 Msa1386020:three_prime_UTR 40.0%
! AGACCATCGTTGATTACCTA+CGG - tig0020780:74203-74222 None:intergenic 40.0%
!! ACAGGTGGTGCTGGTTATAT+TGG + tig0020780:69833-69852 Msa1386020:CDS 45.0%
! TCAAGTTTCTGAGAGTGGCA+TGG - tig0020780:69901-69920 None:intergenic 45.0%
TCCAAAGTCAGCTTTCTGAG+AGG + tig0020780:70156-70175 Msa1386020:CDS 45.0%
GCGAGAAGACTGATATACAC+TGG + tig0020780:70641-70660 Msa1386020:CDS 45.0%
CTTCTCCACTGAAGGATGAT+GGG + tig0020780:70678-70697 Msa1386020:CDS 45.0%
TTTGGGCGACCCTTTATGTA+TGG - tig0020780:70914-70933 None:intergenic 45.0%
GTGATCCTTGCACTAACAAC+GGG + tig0020780:71084-71103 Msa1386020:intron 45.0%
TGATCCTTGCACTAACAACG+GGG + tig0020780:71085-71104 Msa1386020:intron 45.0%
TTCATATCCCCAAAGGACGT+GGG - tig0020780:71140-71159 None:intergenic 45.0%
GGTCCAATTAAATCCCTCAC+CGG + tig0020780:71538-71557 Msa1386020:intron 45.0%
ACACCGGTGAGGGATTTAAT+TGG - tig0020780:71544-71563 None:intergenic 45.0%
! CACTGGATAGTGGTGCATTT+GGG - tig0020780:71670-71689 None:intergenic 45.0%
! TCACTGGATAGTGGTGCATT+TGG - tig0020780:71671-71690 None:intergenic 45.0%
!!! CTTTTTTGGTGGCAGTGTCA+TGG - tig0020780:71712-71731 None:intergenic 45.0%
CATGGATATTGTTCAGGCTG+TGG + tig0020780:72248-72267 Msa1386020:intron 45.0%
GATCTAAGGGTCAAGATGAG+TGG + tig0020780:72353-72372 Msa1386020:intron 45.0%
ACACTGGTGAGGGACTTAAT+TGG + tig0020780:72377-72396 Msa1386020:intron 45.0%
TGTGTATCTTAGGATTCGCG+GGG - tig0020780:72682-72701 None:intergenic 45.0%
TTCTCTCTCTGCCAATGTCT+TGG - tig0020780:72786-72805 None:intergenic 45.0%
! TGGAAATGGTGGAATTGAGG+TGG + tig0020780:72835-72854 Msa1386020:CDS 45.0%
GGAATTGAGGTGGTTACTCT+TGG + tig0020780:72845-72864 Msa1386020:CDS 45.0%
CACCTAATTGTCTCACTCAC+CGG - tig0020780:73309-73328 None:intergenic 45.0%
! CCGAGTGGAATTTGACTTTG+TGG + tig0020780:73753-73772 Msa1386020:intron 45.0%
TGTCAAATGCGGAAGAAGGA+CGG + tig0020780:74047-74066 Msa1386020:CDS 45.0%
CTTGTCCGGAAACCAAATGA+AGG - tig0020780:74144-74163 None:intergenic 45.0%
! TCATTTGGTTTCCGGACAAG+TGG + tig0020780:74144-74163 Msa1386020:three_prime_UTR 45.0%
TTGATATGGAGACACTCCGT+AGG + tig0020780:74184-74203 Msa1386020:three_prime_UTR 45.0%
ACTCCGTAGGTAATCAACGA+TGG + tig0020780:74197-74216 Msa1386020:three_prime_UTR 45.0%
TAGAATGTGATTGGGGGTTG+AGG - tig0020780:74398-74417 None:intergenic 45.0%
!! ATATTTAATTAAAAAATGAA+CGG - tig0020780:70048-70067 None:intergenic 5.0%
! AGTGATGGAAAGGAGCTGCA+AGG + tig0020780:69802-69821 Msa1386020:exon 50.0%
AGCTGCAAGGTGTGTGTTAC+AGG + tig0020780:69815-69834 Msa1386020:CDS 50.0%
TGCAAGGTGTGTGTTACAGG+TGG + tig0020780:69818-69837 Msa1386020:CDS 50.0%
! GCCTCTCAGAAAGCTGACTT+TGG - tig0020780:70160-70179 None:intergenic 50.0%
GTAGATAGGGAGTGGCAACA+TGG - tig0020780:70278-70297 None:intergenic 50.0%
ATAGAGGAAGCAGCAGTAGC+AGG + tig0020780:70578-70597 Msa1386020:CDS 50.0%
ACTGATATACACTGGCACCG+TGG + tig0020780:70649-70668 Msa1386020:CDS 50.0%
GCTTCTCCACTGAAGGATGA+TGG + tig0020780:70677-70696 Msa1386020:CDS 50.0%
TATGGAAAGCGGTGAGAGGA+AGG - tig0020780:70760-70779 None:intergenic 50.0%
TCCTCTCACCGCTTTCCATA+AGG + tig0020780:70760-70779 Msa1386020:CDS 50.0%
ACCTTATGGAAAGCGGTGAG+AGG - tig0020780:70764-70783 None:intergenic 50.0%
GATCCTTGCACTAACAACGG+GGG + tig0020780:71086-71105 Msa1386020:intron 50.0%
TGGTTGAACCCACGTCCTTT+GGG + tig0020780:71129-71148 Msa1386020:intron 50.0%
GTTCATATCCCCAAAGGACG+TGG - tig0020780:71141-71160 None:intergenic 50.0%
GGTCAAGATGAGTGGTACAC+CGG - tig0020780:72361-72380 None:intergenic 50.0%
GCTGGATGCGTTGGATCTAA+TGG - tig0020780:71581-71600 None:intergenic 50.0%
! GATAGTGGTGCATTTGGGTG+AGG - tig0020780:71665-71684 None:intergenic 50.0%
GGTGGTAGTTCACTGGATAG+TGG - tig0020780:71680-71699 None:intergenic 50.0%
!! AGTGGTTGGTGGTAGTTCAC+TGG - tig0020780:71687-71706 None:intergenic 50.0%
! GTGTCATGGATAGTGGTTGG+TGG - tig0020780:71698-71717 None:intergenic 50.0%
! GCAGTGTCATGGATAGTGGT+TGG - tig0020780:71701-71720 None:intergenic 50.0%
CTGCCACCAAAAAAGTCCGT+CGG + tig0020780:71717-71736 Msa1386020:intron 50.0%
!!! TCTCCGACGGACTTTTTTGG+TGG - tig0020780:71723-71742 None:intergenic 50.0%
GGTCAAGATGAGTGGTACAC+TGG + tig0020780:72361-72380 Msa1386020:intron 50.0%
AGATGAGTGGTACACTGGTG+AGG + tig0020780:72366-72385 Msa1386020:intron 50.0%
GATGAGTGGTACACTGGTGA+GGG + tig0020780:72367-72386 Msa1386020:intron 50.0%
!! CATGGTGGATTCTAGGGTGA+GGG - tig0020780:72404-72423 None:intergenic 50.0%
!! ACATGGTGGATTCTAGGGTG+AGG - tig0020780:72405-72424 None:intergenic 50.0%
CTTAGGATTCGCGGGGAATT+TGG - tig0020780:72675-72694 None:intergenic 50.0%
! GAGGTGGTTACTCTTGGTGT+TGG + tig0020780:72851-72870 Msa1386020:CDS 50.0%
!! TACTCTTGGTGTTGGCCTAG+TGG + tig0020780:72859-72878 Msa1386020:CDS 50.0%
!! ACTCTTGGTGTTGGCCTAGT+GGG + tig0020780:72860-72879 Msa1386020:CDS 50.0%
AGCCGGTGAGTGAGACAATT+AGG + tig0020780:73304-73323 Msa1386020:intron 50.0%
AACACCCAATCCGATCCACA+TGG + tig0020780:73589-73608 Msa1386020:intron 50.0%
TGTGCCATGTGGATCGGATT+GGG - tig0020780:73596-73615 None:intergenic 50.0%
CTCATGTGTGCCATGTGGAT+CGG - tig0020780:73602-73621 None:intergenic 50.0%
CTTACCTCATGTGTGCCATG+TGG - tig0020780:73607-73626 None:intergenic 50.0%
GTCAAATGCGGAAGAAGGAC+GGG + tig0020780:74048-74067 Msa1386020:CDS 50.0%
GTGTGTGTTACAGGTGGTGC+TGG + tig0020780:69824-69843 Msa1386020:CDS 55.0%
CAGTGGAGAAGCAGCAACCA+CGG - tig0020780:70669-70688 None:intergenic 55.0%
! GGTTGCTGCTTCTCCACTGA+AGG + tig0020780:70670-70689 Msa1386020:CDS 55.0%
CCACTCCCATCATCCTTCAG+TGG - tig0020780:70686-70705 None:intergenic 55.0%
!! CCACTGAAGGATGATGGGAG+TGG + tig0020780:70683-70702 Msa1386020:CDS 55.0%
TGAGAGGAAGGTGGAGACTC+TGG - tig0020780:70748-70767 None:intergenic 55.0%
CAACCCCCGTTGTTAGTGCA+AGG - tig0020780:71092-71111 None:intergenic 55.0%
TTCAACCACCACACGAGCGT+GGG - tig0020780:71117-71136 None:intergenic 55.0%
GTGGTTGAACCCACGTCCTT+TGG + tig0020780:71128-71147 Msa1386020:intron 55.0%
GGTTGAACCCACGTCCTTTG+GGG + tig0020780:71130-71149 Msa1386020:intron 55.0%
GATGAGTGGTACACCGGTGA+GGG - tig0020780:71554-71573 None:intergenic 55.0%
AGATGAGTGGTACACCGGTG+AGG - tig0020780:71555-71574 None:intergenic 55.0%
GGTGGCAGTGTCATGGATAG+TGG - tig0020780:71705-71724 None:intergenic 55.0%
!! GAAGAGCATCTCCTCCCACT+AGG - tig0020780:72877-72896 None:intergenic 55.0%
GTGTGCCATGTGGATCGGAT+TGG - tig0020780:73597-73616 None:intergenic 55.0%
CGATCCACATGGCACACATG+AGG + tig0020780:73600-73619 Msa1386020:intron 55.0%
GTGATTGGGGGTTGAGGCAA+GGG - tig0020780:74392-74411 None:intergenic 55.0%
TGTGATTGGGGGTTGAGGCA+AGG - tig0020780:74393-74412 None:intergenic 55.0%
! GGAAGGTGGAGACTCTGGAG+AGG - tig0020780:70743-70762 None:intergenic 60.0%
GGAAAGCGGTGAGAGGAAGG+TGG - tig0020780:70757-70776 None:intergenic 60.0%
TTGAACCCACGCTCGTGTGG+TGG + tig0020780:71109-71128 Msa1386020:intron 60.0%
GTTCAACCACCACACGAGCG+TGG - tig0020780:71118-71137 None:intergenic 60.0%
!! CTTGGTGTTGGCCTAGTGGG+AGG + tig0020780:72863-72882 Msa1386020:CDS 60.0%
GGGTTGAACCCACGCTCGTG+TGG + tig0020780:71106-71125 Msa1386020:intron 65.0%
GGGGGTTGAGGCAAGGGCAG+AGG - tig0020780:74386-74405 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0020780 gene 69693 74606 69693 ID=Msa1386020;Name=Msa1386020
tig0020780 mRNA 69693 74606 69693 ID=Msa1386020-mRNA-1;Parent=Msa1386020;Name=Msa1386020-mRNA-1;_AED=0.07;_eAED=0.07;_QI=113|1|1|1|1|1|5|520|341
tig0020780 exon 69693 69920 69693 ID=Msa1386020-mRNA-1:exon:9895;Parent=Msa1386020-mRNA-1
tig0020780 exon 70148 70314 70148 ID=Msa1386020-mRNA-1:exon:9896;Parent=Msa1386020-mRNA-1
tig0020780 exon 70569 70781 70569 ID=Msa1386020-mRNA-1:exon:9897;Parent=Msa1386020-mRNA-1
tig0020780 exon 72770 73158 72770 ID=Msa1386020-mRNA-1:exon:9898;Parent=Msa1386020-mRNA-1
tig0020780 exon 73945 74606 73945 ID=Msa1386020-mRNA-1:exon:9899;Parent=Msa1386020-mRNA-1
tig0020780 five_prime_UTR 69693 69805 69693 ID=Msa1386020-mRNA-1:five_prime_utr;Parent=Msa1386020-mRNA-1
tig0020780 CDS 69806 69920 69806 ID=Msa1386020-mRNA-1:cds;Parent=Msa1386020-mRNA-1
tig0020780 CDS 70148 70314 70148 ID=Msa1386020-mRNA-1:cds;Parent=Msa1386020-mRNA-1
tig0020780 CDS 70569 70781 70569 ID=Msa1386020-mRNA-1:cds;Parent=Msa1386020-mRNA-1
tig0020780 CDS 72770 73158 72770 ID=Msa1386020-mRNA-1:cds;Parent=Msa1386020-mRNA-1
tig0020780 CDS 73945 74086 73945 ID=Msa1386020-mRNA-1:cds;Parent=Msa1386020-mRNA-1
tig0020780 three_prime_UTR 74087 74606 74087 ID=Msa1386020-mRNA-1:three_prime_utr;Parent=Msa1386020-mRNA-1
Gene Sequence

>Msa1386020

ATGGAAAGGAGCTGCAAGGTGTGTGTTACAGGTGGTGCTGGTTATATTGGCTCTCTCCTAGTCAAGAAGCTTTTGGAAAAGGGATACACTGTCCATGCCACTCTCAGAAACTTGAAGGACGAGTCCAAAGTCAGCTTTCTGAGAGGCTTTCCACATGCAAATACAAGATTGGTGTTATTTGAAGCTGACATCTATAAACCAGATGATTTTTGGCCAGCAATTCAAGGCTGTGAATTTGTCTTCCATGTTGCCACTCCCTATCTACATCAAACTGATTCTCAGTTTAAGAGCATAGAGGAAGCAGCAGTAGCAGGTGTAAAAAGCATAGCTGAGACTTGTATTAAATCAAAAACAGCGAGAAGACTGATATACACTGGCACCGTGGTTGCTGCTTCTCCACTGAAGGATGATGGGAGTGGTTACAAAGACTTCATTGATGAAACTTGTTGGACTCCTCTCCAGAGTCTCCACCTTCCTCTCACCGCTTTCCATAAGGAGTACGCTTATTCCAAGACATTGGCAGAGAGAGAATTATTAACGAGTTATGGTAAAGATGAAAATGGAAATGGTGGAATTGAGGTGGTTACTCTTGGTGTTGGCCTAGTGGGAGGAGATGCTCTTCTCAGTTACTTACCCGCAAGTGTTGCAGTGATTATCTCTCAGCTTCAAGACAATGAAGTTGCATATCAGTCTATGAAGTTCTTAGAAGATATAGATGGAAAAATTCCACTAGTCCACATTGATGATGTTTGTGAAGCTCATATCTTTTGTGCTGAAGATTCATCTATCAATGACAGATTTTTGGTTGCAAGCTCATATGCATCATCAGCAGAGATAGCAAATTATTATCTTCAAAACTATCCAGAATTCAATTTGAAAGAGAAGTATTTGGAAGAGTCAAACAGAGCAATCAAATGGGCATCAACAAAGCTCATAGATAAAGGGTTTTCCTACAAATATGATCTCAAGATGATACTAGACGATAGTGTCAAATGCGGAAGAAGGACGGGCGATCTTAGTATATAA

Protein sequence

>Msa1386020

MERSCKVCVTGGAGYIGSLLVKKLLEKGYTVHATLRNLKDESKVSFLRGFPHANTRLVLFEADIYKPDDFWPAIQGCEFVFHVATPYLHQTDSQFKSIEEAAVAGVKSIAETCIKSKTARRLIYTGTVVAASPLKDDGSGYKDFIDETCWTPLQSLHLPLTAFHKEYAYSKTLAERELLTSYGKDENGNGGIEVVTLGVGLVGGDALLSYLPASVAVIISQLQDNEVAYQSMKFLEDIDGKIPLVHIDDVCEAHIFCAEDSSINDRFLVASSYASSAEIANYYLQNYPEFNLKEKYLEESNRAIKWASTKLIDKGFSYKYDLKMILDDSVKCGRRTGDLSI*