Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944160 | XP_013451540.2 | 97.611 | 293 | 7 | 0 | 1 | 293 | 1 | 293 | 0.0 | 597 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944160 | sp|Q8LGJ5|PCO2_ARATH | 52.743 | 237 | 101 | 6 | 58 | 290 | 47 | 276 | 4.66e-76 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0064960 | Msa0944160 | 0.802885 | 4.537315e-49 | -8.615850e-47 |
| Msa0110240 | Msa0944160 | 0.807260 | 5.513296e-50 | -8.615850e-47 |
| Msa0465420 | Msa0944160 | 0.802535 | 5.357650e-49 | -8.615850e-47 |
| Msa0878410 | Msa0944160 | 0.889156 | 3.116502e-73 | -8.615850e-47 |
| Msa0944160 | Msa0980490 | 0.871765 | 5.324660e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944160 | MtrunA17_Chr6g0460971 | 97.611 | 293 | 7 | 0 | 1 | 293 | 1 | 293 | 0.0 | 597 |
| Msa0944160 | MtrunA17_Chr7g0253891 | 78.723 | 282 | 57 | 3 | 12 | 291 | 1 | 281 | 2.45e-162 | 452 |
| Msa0944160 | MtrunA17_Chr6g0452941 | 49.793 | 241 | 112 | 5 | 58 | 291 | 41 | 279 | 6.21e-75 | 230 |
| Msa0944160 | MtrunA17_Chr7g0216881 | 51.770 | 226 | 99 | 4 | 58 | 278 | 45 | 265 | 4.73e-74 | 228 |
| Msa0944160 | MtrunA17_Chr2g0307681 | 44.177 | 249 | 120 | 6 | 55 | 288 | 25 | 269 | 7.35e-67 | 209 |
| Msa0944160 | MtrunA17_Chr2g0320221 | 40.833 | 240 | 125 | 7 | 58 | 288 | 5 | 236 | 3.16e-53 | 173 |
| Msa0944160 | MtrunA17_Chr4g0041281 | 39.256 | 242 | 129 | 7 | 57 | 288 | 4 | 237 | 8.99e-53 | 172 |
| Msa0944160 | MtrunA17_Chr2g0283961 | 38.843 | 242 | 132 | 6 | 58 | 288 | 4 | 240 | 1.73e-50 | 166 |
| Msa0944160 | MtrunA17_Chr5g0426531 | 35.743 | 249 | 130 | 6 | 53 | 289 | 1 | 231 | 5.62e-44 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944160 | AT5G39890.1 | 52.743 | 237 | 101 | 6 | 58 | 290 | 47 | 276 | 4.74e-77 | 236 |
| Msa0944160 | AT5G15120.1 | 46.457 | 254 | 122 | 7 | 44 | 288 | 43 | 291 | 3.21e-73 | 227 |
| Msa0944160 | AT5G39890.2 | 56.410 | 195 | 75 | 5 | 58 | 249 | 47 | 234 | 4.79e-68 | 212 |
| Msa0944160 | AT1G18490.1 | 40.449 | 267 | 142 | 6 | 37 | 288 | 16 | 280 | 9.33e-63 | 200 |
| Msa0944160 | AT3G58670.2 | 42.917 | 240 | 124 | 6 | 58 | 288 | 5 | 240 | 1.11e-56 | 183 |
| Msa0944160 | AT3G58670.3 | 42.917 | 240 | 124 | 6 | 58 | 288 | 5 | 240 | 1.11e-56 | 183 |
| Msa0944160 | AT3G58670.1 | 42.917 | 240 | 124 | 6 | 58 | 288 | 5 | 240 | 1.11e-56 | 183 |
| Msa0944160 | AT2G42670.1 | 40.336 | 238 | 130 | 5 | 59 | 288 | 6 | 239 | 1.68e-55 | 180 |
| Msa0944160 | AT2G42670.2 | 40.167 | 239 | 130 | 6 | 59 | 288 | 6 | 240 | 1.14e-53 | 175 |
| Msa0944160 | AT3G58670.4 | 48.571 | 175 | 86 | 3 | 115 | 288 | 26 | 197 | 3.49e-49 | 162 |
| Msa0944160 | AT2G42670.3 | 46.203 | 158 | 81 | 3 | 132 | 288 | 18 | 172 | 2.01e-40 | 139 |
Find 50 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGGATGGGATTGAATATT+TGG | 0.087793 | 6_3:-20681003 | Msa0944160:CDS |
| CTCATGCAAGGAAACATTTA+AGG | 0.167944 | 6_3:-20684258 | Msa0944160:CDS |
| TTCTCTTTGAAAATGCTTTC+AGG | 0.169239 | 6_3:+20683153 | None:intergenic |
| AAAATTATCACATTTGTATA+TGG | 0.267408 | 6_3:+20683110 | None:intergenic |
| TTACTTAGTCCAACATCTTC+TGG | 0.273780 | 6_3:+20683195 | None:intergenic |
| TATAGGGAAGTCTCTATAAT+TGG | 0.282448 | 6_3:+20680975 | None:intergenic |
| ACAATCTCTGCCATCATCTT+TGG | 0.288346 | 6_3:+20681894 | None:intergenic |
| TGGAGGTGTATCTATGAAAA+TGG | 0.310811 | 6_3:-20684432 | Msa0944160:CDS |
| CTGCCATCATCTTTGGAATA+AGG | 0.310958 | 6_3:+20681901 | None:intergenic |
| CACAAACTATGTCACATTCT+TGG | 0.323808 | 6_3:-20684203 | Msa0944160:intron |
| TGCATATTAAGTCTTATGAT+TGG | 0.357960 | 6_3:-20682894 | Msa0944160:CDS |
| GTTGATAATCTGATCTTATA+GGG | 0.372001 | 6_3:+20680959 | None:intergenic |
| TGTGCTGTTCTTGATGTCAT+TGG | 0.379870 | 6_3:-20681928 | Msa0944160:CDS |
| TTAACCTTGCTACTATGATA+AGG | 0.405817 | 6_3:+20684320 | None:intergenic |
| GCATATTAAGTCTTATGATT+GGG | 0.417877 | 6_3:-20682893 | Msa0944160:CDS |
| AAAAGTTGGTTATGTGAAAA+GGG | 0.420424 | 6_3:-20684363 | Msa0944160:CDS |
| TGTGGTGAAGGGACAGTGTC+AGG | 0.421729 | 6_3:+20684233 | None:intergenic |
| AACAAATTGTGAGAGACATC+TGG | 0.429933 | 6_3:+20682865 | None:intergenic |
| TAACATATGAAGGAAGATAT+TGG | 0.443132 | 6_3:-20684452 | None:intergenic |
| ATGGATGGGATTGAATATTT+GGG | 0.444661 | 6_3:-20681002 | Msa0944160:CDS |
| GAGTTATGGCTGTGAATTCA+TGG | 0.446167 | 6_3:+20681953 | None:intergenic |
| TTACTGAAAACAGTCATTCC+TGG | 0.448277 | 6_3:+20682934 | None:intergenic |
| AAAGAAGAAAATGAAAGTTA+TGG | 0.462932 | 6_3:-20681062 | Msa0944160:CDS |
| GATGCCAGAAAACTCTCAAA+TGG | 0.465281 | 6_3:-20681021 | Msa0944160:CDS |
| AAGAACAGCACATGGAGTTA+TGG | 0.471493 | 6_3:+20681939 | None:intergenic |
| CCAGAAAACTCTCAAATGGA+TGG | 0.498542 | 6_3:-20681017 | Msa0944160:CDS |
| GAAATTATTTGTCTCATGCA+AGG | 0.509216 | 6_3:-20684270 | Msa0944160:CDS |
| TGAAGTGCTTTATTAGACAT+TGG | 0.510691 | 6_3:+20684293 | None:intergenic |
| TCATTCCTGGGTGATTATGA+AGG | 0.514217 | 6_3:+20682947 | None:intergenic |
| AGGGAAGTCTCTATAATTGG+AGG | 0.527159 | 6_3:+20680978 | None:intergenic |
| TCATGCAAGGAAACATTTAA+GGG | 0.532868 | 6_3:-20684257 | Msa0944160:CDS |
| CCTCCTTATTCCAAAGATGA+TGG | 0.537366 | 6_3:-20681904 | Msa0944160:CDS |
| ATGGTTGTATATGTGACCCT+TGG | 0.543482 | 6_3:+20683129 | None:intergenic |
| TACTGGGAAAAGCAGTGTAA+AGG | 0.545686 | 6_3:+20681854 | None:intergenic |
| TTTGAATACATACATTGAGA+TGG | 0.546750 | 6_3:+20682835 | None:intergenic |
| TACTGAAAACAGTCATTCCT+GGG | 0.547209 | 6_3:+20682935 | None:intergenic |
| CATTCCTGGGTGATTATGAA+GGG | 0.558120 | 6_3:+20682948 | None:intergenic |
| CAGAAAACTCTCAAATGGAT+GGG | 0.570322 | 6_3:-20681016 | Msa0944160:CDS |
| AAGAAAATGAAAGTTATGGA+TGG | 0.575704 | 6_3:-20681058 | Msa0944160:CDS |
| AGGTGTATCTATGAAAATGG+AGG | 0.615461 | 6_3:-20684429 | Msa0944160:CDS |
| AACATGAAGCCAGAAGATGT+TGG | 0.636253 | 6_3:-20683204 | Msa0944160:CDS |
| CCATCATCTTTGGAATAAGG+AGG | 0.645071 | 6_3:+20681904 | None:intergenic |
| CATATGAAGGAAGATATTGG+AGG | 0.649850 | 6_3:-20684449 | Msa0944160:CDS |
| GAAACCTTATCATAGTAGCA+AGG | 0.650637 | 6_3:-20684324 | Msa0944160:CDS |
| ATGACATCAAGAACAGCACA+TGG | 0.655518 | 6_3:+20681931 | None:intergenic |
| GGTGTATCTATGAAAATGGA+GGG | 0.655645 | 6_3:-20684428 | Msa0944160:CDS |
| ATTCCCCTTCATAATCACCC+AGG | 0.663619 | 6_3:-20682952 | Msa0944160:CDS |
| GTATCTATGAAAATGGAGGG+TGG | 0.667112 | 6_3:-20684425 | Msa0944160:CDS |
| ATTCCTGGGTGATTATGAAG+GGG | 0.670917 | 6_3:+20682949 | None:intergenic |
| TACAACACTGAAGTGTCACA+TGG | 0.758295 | 6_3:+20681997 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTTACAATTTGTT+TGG | - | chr6_3:20681602-20681621 | Msa0944160:intron | 10.0% |
| !!! | TACATTTTATTGTAATATAA+AGG | + | chr6_3:20682731-20682750 | None:intergenic | 10.0% |
| !! | TTTATATTACAATAAAATGT+AGG | - | chr6_3:20682730-20682749 | Msa0944160:intron | 10.0% |
| !!! | TAACAAATTTTATATCATAA+AGG | + | chr6_3:20683612-20683631 | None:intergenic | 10.0% |
| !!! | AATTTCCATTAAAATTTTAT+CGG | + | chr6_3:20684149-20684168 | None:intergenic | 10.0% |
| !! | ATCAATCAATTTATTATCTT+AGG | - | chr6_3:20681463-20681482 | Msa0944160:intron | 15.0% |
| !!! | TATATTTTAGAAATTGAGTA+GGG | - | chr6_3:20681761-20681780 | Msa0944160:intron | 15.0% |
| !! | TATATATTTATTCAACCAAT+GGG | + | chr6_3:20681987-20682006 | None:intergenic | 15.0% |
| !! | TTATATATTTATTCAACCAA+TGG | + | chr6_3:20681988-20682007 | None:intergenic | 15.0% |
| !! | ATTGGTTGAATAAATATATA+AGG | - | chr6_3:20681987-20682006 | Msa0944160:CDS | 15.0% |
| !!! | ATAATTATGAACAATACTTT+TGG | + | chr6_3:20682174-20682193 | None:intergenic | 15.0% |
| !! | AAAATTATCACATTTGTATA+TGG | + | chr6_3:20682313-20682332 | None:intergenic | 15.0% |
| !! | ATTAAATTAATCTCAATTCA+TGG | - | chr6_3:20682627-20682646 | Msa0944160:intron | 15.0% |
| !! | TTAAATTAATCTCAATTCAT+GGG | - | chr6_3:20682628-20682647 | Msa0944160:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr6_3:20683759-20683778 | Msa0944160:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr6_3:20683760-20683779 | Msa0944160:intron | 15.0% |
| !!! | ATTTCCATTAAAATTTTATC+GGG | + | chr6_3:20684148-20684167 | None:intergenic | 15.0% |
| !!! | TCTCTATTTTGAATTTTTTT+AGG | - | chr6_3:20684204-20684223 | Msa0944160:CDS | 15.0% |
| !!! | TTTGAAATTGAGTGTTTAAT+TGG | - | chr6_3:20681271-20681290 | Msa0944160:intron | 20.0% |
| !! | TTGTAACACTAACATATAAT+TGG | + | chr6_3:20681338-20681357 | None:intergenic | 20.0% |
| !! | ATATACACTAGAAAGATAAA+AGG | + | chr6_3:20681746-20681765 | None:intergenic | 20.0% |
| !!! | GTATATTTTAGAAATTGAGT+AGG | - | chr6_3:20681760-20681779 | Msa0944160:intron | 20.0% |
| !!! | ACCTTACAAATTTTTTTGTA+GGG | + | chr6_3:20681798-20681817 | None:intergenic | 20.0% |
| !!! | GAAATTATTGATGATATTAG+AGG | + | chr6_3:20681961-20681980 | None:intergenic | 20.0% |
| !! | ATATATTTATTCAACCAATG+GGG | + | chr6_3:20681986-20682005 | None:intergenic | 20.0% |
| !! | TAAATTATTCATCAGACTTT+CGG | - | chr6_3:20682091-20682110 | Msa0944160:intron | 20.0% |
| !!! | ATATAACTTTCTTGTTGTTT+GGG | + | chr6_3:20683062-20683081 | None:intergenic | 20.0% |
| !!! | TAAAGTCTAAAATGTAAAGT+TGG | + | chr6_3:20683105-20683124 | None:intergenic | 20.0% |
| !! | TGTTCATGTTCTTTATTATT+GGG | + | chr6_3:20683282-20683301 | None:intergenic | 20.0% |
| !! | TTGTTCATGTTCTTTATTAT+TGG | + | chr6_3:20683283-20683302 | None:intergenic | 20.0% |
| !!! | AAAATAAAGTATTGCTTACT+GGG | + | chr6_3:20683585-20683604 | None:intergenic | 20.0% |
| !!! | AAAAATAAAGTATTGCTTAC+TGG | + | chr6_3:20683586-20683605 | None:intergenic | 20.0% |
| !!! | TAAGAAAAGTGTATAAATGA+AGG | - | chr6_3:20683694-20683713 | Msa0944160:intron | 20.0% |
| !!! | AAGAAAAGTGTATAAATGAA+GGG | - | chr6_3:20683695-20683714 | Msa0944160:intron | 20.0% |
| !! | AAAAGTGGAATATATTGTAT+TGG | - | chr6_3:20683718-20683737 | Msa0944160:intron | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr6_3:20683719-20683738 | Msa0944160:intron | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+AGG | - | chr6_3:20683793-20683812 | Msa0944160:intron | 20.0% |
| !!! | TTATTTAACTCACTTTTAGT+GGG | + | chr6_3:20683941-20683960 | None:intergenic | 20.0% |
| !!! | ATTATTTAACTCACTTTTAG+TGG | + | chr6_3:20683942-20683961 | None:intergenic | 20.0% |
| !! | GAGTTAAATAATTATAGCAT+TGG | - | chr6_3:20683950-20683969 | Msa0944160:intron | 20.0% |
| !!! | TGAAGACTTATGATTTTATA+GGG | + | chr6_3:20684117-20684136 | None:intergenic | 20.0% |
| !!! | TTGAAGACTTATGATTTTAT+AGG | + | chr6_3:20684118-20684137 | None:intergenic | 20.0% |
| !!! | TAATCCCGATAAAATTTTAA+TGG | - | chr6_3:20684141-20684160 | Msa0944160:intron | 20.0% |
| !! | AAAGAAGAAAATGAAAGTTA+TGG | - | chr6_3:20684358-20684377 | Msa0944160:CDS | 20.0% |
| !! | AAAAAGTTGGTTATGTGAAA+AGG | - | chr6_3:20681056-20681075 | Msa0944160:CDS | 25.0% |
| !! | AAAAGTTGGTTATGTGAAAA+GGG | - | chr6_3:20681057-20681076 | Msa0944160:CDS | 25.0% |
| !! | AAATTTTTGTGTCATGTCTT+TGG | - | chr6_3:20681356-20681375 | Msa0944160:intron | 25.0% |
| !!! | ATGTGAATGTGGATTTTTTA+AGG | - | chr6_3:20681413-20681432 | Msa0944160:intron | 25.0% |
| ! | TCCCTACAAAAAAATTTGTA+AGG | - | chr6_3:20681794-20681813 | Msa0944160:intron | 25.0% |
| !!! | CACCTTACAAATTTTTTTGT+AGG | + | chr6_3:20681799-20681818 | None:intergenic | 25.0% |
| !!! | ATTTTTTTCCTACCTTCAAA+AGG | - | chr6_3:20682441-20682460 | Msa0944160:intron | 25.0% |
| !! | TGCATATTAAGTCTTATGAT+TGG | - | chr6_3:20682526-20682545 | Msa0944160:intron | 25.0% |
| !! | GCATATTAAGTCTTATGATT+GGG | - | chr6_3:20682527-20682546 | Msa0944160:intron | 25.0% |
| ! | TTTGAATACATACATTGAGA+TGG | + | chr6_3:20682588-20682607 | None:intergenic | 25.0% |
| !! | TTGCTCTAATTTTAAACCAT+GGG | + | chr6_3:20682693-20682712 | None:intergenic | 25.0% |
| ! | TTATTCCCAAATAATAAGAC+AGG | + | chr6_3:20682867-20682886 | None:intergenic | 25.0% |
| !! | AATTTTGAATCAAGATCAGA+CGG | + | chr6_3:20683010-20683029 | None:intergenic | 25.0% |
| !!! | GATATAACTTTCTTGTTGTT+TGG | + | chr6_3:20683063-20683082 | None:intergenic | 25.0% |
| !!! | TGGACACGAATTTTAATTTA+TGG | + | chr6_3:20683085-20683104 | None:intergenic | 25.0% |
| ! | TGTATATAATCTTGTACACA+TGG | - | chr6_3:20683347-20683366 | Msa0944160:intron | 25.0% |
| !! | TTGAAATAGGTCAGTTATTT+TGG | - | chr6_3:20683806-20683825 | Msa0944160:intron | 25.0% |
| !!! | TGAAATAGGTCAGTTATTTT+GGG | - | chr6_3:20683807-20683826 | Msa0944160:intron | 25.0% |
| !!! | GGACACTTTTTTTAGAAAAT+GGG | - | chr6_3:20683828-20683847 | Msa0944160:intron | 25.0% |
| ! | TAATGTTCATGTAACATGAT+AGG | - | chr6_3:20683914-20683933 | Msa0944160:intron | 25.0% |
| ! | AATGTTCATGTAACATGATA+GGG | - | chr6_3:20683915-20683934 | Msa0944160:intron | 25.0% |
| ! | TACAAACTACAGTATTATGA+AGG | + | chr6_3:20684177-20684196 | None:intergenic | 25.0% |
| ! | TCCTTAAAAAATGTCTTTGA+TGG | - | chr6_3:20684247-20684266 | Msa0944160:CDS | 25.0% |
| !!! | TCCATCAAAGACATTTTTTA+AGG | + | chr6_3:20684251-20684270 | None:intergenic | 25.0% |
| ! | ATGATTTCAAATATTGCAGA+TGG | - | chr6_3:20684319-20684338 | Msa0944160:CDS | 25.0% |
| ! | AAGAAAATGAAAGTTATGGA+TGG | - | chr6_3:20684362-20684381 | Msa0944160:CDS | 25.0% |
| GTTAGACATGTTGAAAAAGT+TGG | - | chr6_3:20681043-20681062 | Msa0944160:CDS | 30.0% | |
| TTAACCTTGCTACTATGATA+AGG | + | chr6_3:20681103-20681122 | None:intergenic | 30.0% | |
| ! | TGAAGTGCTTTATTAGACAT+TGG | + | chr6_3:20681130-20681149 | None:intergenic | 30.0% |
| GAAATTATTTGTCTCATGCA+AGG | - | chr6_3:20681150-20681169 | Msa0944160:intron | 30.0% | |
| TCATGCAAGGAAACATTTAA+GGG | - | chr6_3:20681163-20681182 | Msa0944160:intron | 30.0% | |
| !! | CATAGTTTGTGAACATTTTG+TGG | + | chr6_3:20681208-20681227 | None:intergenic | 30.0% |
| !! | TTAGCTTTTGCAATTCATCA+AGG | - | chr6_3:20681541-20681560 | Msa0944160:intron | 30.0% |
| ! | TAGCTTTTGCAATTCATCAA+GGG | - | chr6_3:20681542-20681561 | Msa0944160:intron | 30.0% |
| AAATGGAAACTAGAGAAAGA+AGG | + | chr6_3:20681676-20681695 | None:intergenic | 30.0% | |
| CTCGAAAATGTGTTTATAAG+AGG | + | chr6_3:20681833-20681852 | None:intergenic | 30.0% | |
| TTAGTTAGATTATCCACCAT+TGG | + | chr6_3:20681929-20681948 | None:intergenic | 30.0% | |
| ATTAATTCTACGCAATTCGA+TGG | - | chr6_3:20682030-20682049 | Msa0944160:CDS | 30.0% | |
| !!! | TTGGTTTGTTTTTTAGCCAT+CGG | + | chr6_3:20682155-20682174 | None:intergenic | 30.0% |
| ! | TTCTCTTTGAAAATGCTTTC+AGG | + | chr6_3:20682270-20682289 | None:intergenic | 30.0% |
| ! | CATTTTCAAAGAGAATCCAA+GGG | - | chr6_3:20682275-20682294 | Msa0944160:intron | 30.0% |
| ! | ATTCTAGCTAGTAATTGCAT+TGG | + | chr6_3:20682374-20682393 | None:intergenic | 30.0% |
| ! | GTTGCTCTAATTTTAAACCA+TGG | + | chr6_3:20682694-20682713 | None:intergenic | 30.0% |
| ! | GTTGACCTGTCTTATTATTT+GGG | - | chr6_3:20682859-20682878 | Msa0944160:CDS | 30.0% |
| ! | TCATGGGATCTAAATGTTTT+AGG | + | chr6_3:20683167-20683186 | None:intergenic | 30.0% |
| TGTCGCACTAAATAAAAAGT+GGG | + | chr6_3:20683246-20683265 | None:intergenic | 30.0% | |
| ATGTCGCACTAAATAAAAAG+TGG | + | chr6_3:20683247-20683266 | None:intergenic | 30.0% | |
| TGTATAAATGAAGGGAAAAG+TGG | - | chr6_3:20683703-20683722 | Msa0944160:intron | 30.0% | |
| !!! | GGGACACTTTTTTTAGAAAA+TGG | - | chr6_3:20683827-20683846 | Msa0944160:intron | 30.0% |
| AATGGATGGGATTGAATATT+TGG | - | chr6_3:20684417-20684436 | Msa0944160:CDS | 30.0% | |
| ATGGATGGGATTGAATATTT+GGG | - | chr6_3:20684418-20684437 | Msa0944160:CDS | 30.0% | |
| TATAGGGAAGTCTCTATAAT+TGG | + | chr6_3:20684448-20684467 | None:intergenic | 30.0% | |
| ! | TGGAGGTGTATCTATGAAAA+TGG | - | chr6_3:20680988-20681007 | Msa0944160:CDS | 35.0% |
| AGGTGTATCTATGAAAATGG+AGG | - | chr6_3:20680991-20681010 | Msa0944160:CDS | 35.0% | |
| GGTGTATCTATGAAAATGGA+GGG | - | chr6_3:20680992-20681011 | Msa0944160:CDS | 35.0% | |
| AAAGGGTCATTGTCAAAAAG+AGG | - | chr6_3:20681074-20681093 | Msa0944160:CDS | 35.0% | |
| GAAACCTTATCATAGTAGCA+AGG | - | chr6_3:20681096-20681115 | Msa0944160:intron | 35.0% | |
| CTCATGCAAGGAAACATTTA+AGG | - | chr6_3:20681162-20681181 | Msa0944160:intron | 35.0% | |
| ! | TGTGAACATTTTGTGGTGAA+GGG | + | chr6_3:20681201-20681220 | None:intergenic | 35.0% |
| ! | TTGTGAACATTTTGTGGTGA+AGG | + | chr6_3:20681202-20681221 | None:intergenic | 35.0% |
| CACAAACTATGTCACATTCT+TGG | - | chr6_3:20681217-20681236 | Msa0944160:intron | 35.0% | |
| !! | TTGTGTCATGTCTTTGGAAT+TGG | - | chr6_3:20681362-20681381 | Msa0944160:intron | 35.0% |
| TGTTTGTCCTTTCACATTGT+TGG | - | chr6_3:20681500-20681519 | Msa0944160:intron | 35.0% | |
| GTTTGTCCTTTCACATTGTT+GGG | - | chr6_3:20681501-20681520 | Msa0944160:intron | 35.0% | |
| ATCAATAATTTCCACCCCAT+TGG | - | chr6_3:20681969-20681988 | Msa0944160:CDS | 35.0% | |
| TATTTATTCAACCAATGGGG+TGG | + | chr6_3:20681983-20682002 | None:intergenic | 35.0% | |
| !!! | TGGTTTGTTTTTTAGCCATC+GGG | + | chr6_3:20682154-20682173 | None:intergenic | 35.0% |
| TTACTTAGTCCAACATCTTC+TGG | + | chr6_3:20682228-20682247 | None:intergenic | 35.0% | |
| ! | GCATTTTCAAAGAGAATCCA+AGG | - | chr6_3:20682274-20682293 | Msa0944160:intron | 35.0% |
| !! | GAATTACTCCTTTTGAAGGT+AGG | + | chr6_3:20682452-20682471 | None:intergenic | 35.0% |
| TACTGAAAACAGTCATTCCT+GGG | + | chr6_3:20682488-20682507 | None:intergenic | 35.0% | |
| TTACTGAAAACAGTCATTCC+TGG | + | chr6_3:20682489-20682508 | None:intergenic | 35.0% | |
| ! | TGTTTTCAGTAAGCTTCTGT+TGG | - | chr6_3:20682497-20682516 | Msa0944160:intron | 35.0% |
| ! | GTTTTCAGTAAGCTTCTGTT+GGG | - | chr6_3:20682498-20682517 | Msa0944160:intron | 35.0% |
| AACAAATTGTGAGAGACATC+TGG | + | chr6_3:20682558-20682577 | None:intergenic | 35.0% | |
| ! | TCTAATTTTAAACCATGGGC+AGG | + | chr6_3:20682689-20682708 | None:intergenic | 35.0% |
| ! | CGTTGACCTGTCTTATTATT+TGG | - | chr6_3:20682858-20682877 | Msa0944160:CDS | 35.0% |
| ! | GATTACCGAAATTTAGAACG+TGG | - | chr6_3:20682983-20683002 | Msa0944160:CDS | 35.0% |
| CTTGATTCAAAATTCAGACG+AGG | - | chr6_3:20683016-20683035 | Msa0944160:intron | 35.0% | |
| ! | ATGGTTCACGTTCTGAATTT+CGG | + | chr6_3:20683131-20683150 | None:intergenic | 35.0% |
| TTTAGGCAATATCAGACGAA+TGG | + | chr6_3:20683150-20683169 | None:intergenic | 35.0% | |
| CACACATTTGATGCAATCAT+GGG | + | chr6_3:20683183-20683202 | None:intergenic | 35.0% | |
| TCACACATTTGATGCAATCA+TGG | + | chr6_3:20683184-20683203 | None:intergenic | 35.0% | |
| GGAATACACATCCTATTTGA+TGG | - | chr6_3:20683218-20683237 | Msa0944160:intron | 35.0% | |
| GTCGCACTAAATAAAAAGTG+GGG | + | chr6_3:20683245-20683264 | None:intergenic | 35.0% | |
| !!! | ACATGGTATTTTTTGCAGTG+AGG | - | chr6_3:20683364-20683383 | Msa0944160:intron | 35.0% |
| TCAGTGTTGTATCCAAAAAC+TGG | - | chr6_3:20683435-20683454 | Msa0944160:intron | 35.0% | |
| CAAAGTAGGTCAATTATACC+GGG | + | chr6_3:20683659-20683678 | None:intergenic | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | + | chr6_3:20683660-20683679 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | + | chr6_3:20683673-20683692 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr6_3:20683841-20683860 | Msa0944160:intron | 35.0% | |
| CAGAAAACTCTCAAATGGAT+GGG | - | chr6_3:20684404-20684423 | Msa0944160:CDS | 35.0% | |
| GTATCTATGAAAATGGAGGG+TGG | - | chr6_3:20680995-20681014 | Msa0944160:CDS | 40.0% | |
| TGCATGTTGTGATGTGAATG+TGG | - | chr6_3:20681402-20681421 | Msa0944160:intron | 40.0% | |
| CATCTTCCCAACAATGTGAA+AGG | + | chr6_3:20681510-20681529 | None:intergenic | 40.0% | |
| AATGTAGAGCGTGATTTGAG+TGG | - | chr6_3:20681902-20681921 | Msa0944160:CDS | 40.0% | |
| GTGGATAATCTAACTAACCG+TGG | - | chr6_3:20681932-20681951 | Msa0944160:CDS | 40.0% | |
| !! | GATGATATTAGAGGTGTCCA+CGG | + | chr6_3:20681952-20681971 | None:intergenic | 40.0% |
| GGCTGAACTCTGAATTATCA+TGG | - | chr6_3:20682112-20682131 | Msa0944160:intron | 40.0% | |
| !! | TTCTTTCCTTTAAAGCCCGA+TGG | - | chr6_3:20682136-20682155 | Msa0944160:intron | 40.0% |
| !! | TTTTAGCCATCGGGCTTTAA+AGG | + | chr6_3:20682145-20682164 | None:intergenic | 40.0% |
| AACATGAAGCCAGAAGATGT+TGG | - | chr6_3:20682216-20682235 | Msa0944160:intron | 40.0% | |
| ATGGTTGTATATGTGACCCT+TGG | + | chr6_3:20682294-20682313 | None:intergenic | 40.0% | |
| ! | AGGGGAATTACTCCTTTTGA+AGG | + | chr6_3:20682456-20682475 | None:intergenic | 40.0% |
| ATTCCTGGGTGATTATGAAG+GGG | + | chr6_3:20682474-20682493 | None:intergenic | 40.0% | |
| CATTCCTGGGTGATTATGAA+GGG | + | chr6_3:20682475-20682494 | None:intergenic | 40.0% | |
| TCATTCCTGGGTGATTATGA+AGG | + | chr6_3:20682476-20682495 | None:intergenic | 40.0% | |
| ! | ACGGTCCACGTTCTAAATTT+CGG | + | chr6_3:20682991-20683010 | None:intergenic | 40.0% |
| TGTGTGATTTCGTAACAACG+AGG | - | chr6_3:20683197-20683216 | Msa0944160:CDS | 40.0% | |
| AAAAGTGGGGTCCATCAAAT+AGG | + | chr6_3:20683232-20683251 | None:intergenic | 40.0% | |
| !!! | GGTATTTTTTGCAGTGAGGT+TGG | - | chr6_3:20683368-20683387 | Msa0944160:intron | 40.0% |
| ! | TACAACACTGAAGTGTCACA+TGG | + | chr6_3:20683426-20683445 | None:intergenic | 40.0% |
| GTGTTGTATCCAAAAACTGG+AGG | - | chr6_3:20683438-20683457 | Msa0944160:intron | 40.0% | |
| ! | TGGATATTGCCTCCAGTTTT+TGG | + | chr6_3:20683450-20683469 | None:intergenic | 40.0% |
| GAGTTATGGCTGTGAATTCA+TGG | + | chr6_3:20683470-20683489 | None:intergenic | 40.0% | |
| AAGAACAGCACATGGAGTTA+TGG | + | chr6_3:20683484-20683503 | None:intergenic | 40.0% | |
| ATGACATCAAGAACAGCACA+TGG | + | chr6_3:20683492-20683511 | None:intergenic | 40.0% | |
| ! | TGTGCTGTTCTTGATGTCAT+TGG | - | chr6_3:20683492-20683511 | Msa0944160:intron | 40.0% |
| !! | CCATCATCTTTGGAATAAGG+AGG | + | chr6_3:20683519-20683538 | None:intergenic | 40.0% |
| CCTCCTTATTCCAAAGATGA+TGG | - | chr6_3:20683516-20683535 | Msa0944160:intron | 40.0% | |
| !! | CTGCCATCATCTTTGGAATA+AGG | + | chr6_3:20683522-20683541 | None:intergenic | 40.0% |
| ACAATCTCTGCCATCATCTT+TGG | + | chr6_3:20683529-20683548 | None:intergenic | 40.0% | |
| TACTGGGAAAAGCAGTGTAA+AGG | + | chr6_3:20683569-20683588 | None:intergenic | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | - | chr6_3:20683657-20683676 | Msa0944160:intron | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr6_3:20683842-20683861 | Msa0944160:intron | 40.0% | |
| ! | ACGGAGGGAGTATAGTTTAT+GGG | - | chr6_3:20683865-20683884 | Msa0944160:intron | 40.0% |
| GATGCCAGAAAACTCTCAAA+TGG | - | chr6_3:20684399-20684418 | Msa0944160:CDS | 40.0% | |
| ! | CCATCCATTTGAGAGTTTTC+TGG | + | chr6_3:20684406-20684425 | None:intergenic | 40.0% |
| CCAGAAAACTCTCAAATGGA+TGG | - | chr6_3:20684403-20684422 | Msa0944160:CDS | 40.0% | |
| AGGGAAGTCTCTATAATTGG+AGG | + | chr6_3:20684445-20684464 | None:intergenic | 40.0% | |
| ACGCTCTACATTAAGCGTGA+GGG | + | chr6_3:20681894-20681913 | None:intergenic | 45.0% | |
| TGATTTGAGTGGTCCAATGG+TGG | - | chr6_3:20681913-20681932 | Msa0944160:CDS | 45.0% | |
| ATTCCCCTTCATAATCACCC+AGG | - | chr6_3:20682468-20682487 | Msa0944160:intron | 45.0% | |
| TTCTTTGTAACACCTGCCCA+TGG | - | chr6_3:20682674-20682693 | Msa0944160:intron | 45.0% | |
| AACCTCAAGTGAGGTTGCAT+CGG | + | chr6_3:20682765-20682784 | None:intergenic | 45.0% | |
| !! | CCTCTAAAATTGTTGCACCG+CGG | - | chr6_3:20682803-20682822 | Msa0944160:intron | 45.0% |
| ! | CGGAGGGAGTATATGTATCA+TGG | + | chr6_3:20683635-20683654 | None:intergenic | 45.0% |
| GTAGGTCAATTATACCGGGA+CGG | + | chr6_3:20683655-20683674 | None:intergenic | 45.0% | |
| ! | GACGGAGGGAGTATAGTTTA+TGG | - | chr6_3:20683864-20683883 | Msa0944160:intron | 45.0% |
| !!! | ATGTTATTTTAATTTTTAAA+TGG | + | chr6_3:20681693-20681712 | None:intergenic | 5.0% |
| GCTCTACATTAAGCGTGAGG+GGG | + | chr6_3:20681892-20681911 | None:intergenic | 50.0% | |
| CGCTCTACATTAAGCGTGAG+GGG | + | chr6_3:20681893-20681912 | None:intergenic | 50.0% | |
| CACGCTCTACATTAAGCGTG+AGG | + | chr6_3:20681895-20681914 | None:intergenic | 50.0% | |
| GCGTGATTTGAGTGGTCCAA+TGG | - | chr6_3:20681910-20681929 | Msa0944160:CDS | 50.0% | |
| CGACATTGCAACCTCAAGTG+AGG | + | chr6_3:20682774-20682793 | None:intergenic | 50.0% | |
| ! | CCGCGGTGCAACAATTTTAG+AGG | + | chr6_3:20682806-20682825 | None:intergenic | 50.0% |
| TACATATACTCCCTCCGTCC+CGG | - | chr6_3:20683638-20683657 | Msa0944160:intron | 50.0% | |
| GTCAATTATACCGGGACGGA+GGG | + | chr6_3:20683651-20683670 | None:intergenic | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr6_3:20683846-20683865 | Msa0944160:intron | 50.0% | |
| AAACTATACTCCCTCCGTCC+CGG | + | chr6_3:20683863-20683882 | None:intergenic | 50.0% | |
| TGTGGTGAAGGGACAGTGTC+AGG | + | chr6_3:20681190-20681209 | None:intergenic | 55.0% | |
| GACCGATGCAACCTCACTTG+AGG | - | chr6_3:20682760-20682779 | Msa0944160:intron | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | + | chr6_3:20683652-20683671 | None:intergenic | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr6_3:20683850-20683869 | Msa0944160:intron | 55.0% | |
| TTGCACCGCGGCCACAATTG+CGG | - | chr6_3:20682815-20682834 | Msa0944160:intron | 60.0% | |
| TTCGCCCGCAACCGCAATTG+TGG | + | chr6_3:20682829-20682848 | None:intergenic | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr6_3:20683849-20683868 | Msa0944160:intron | 60.0% | |
| CGCAACCGCAATTGTGGCCG+CGG | + | chr6_3:20682823-20682842 | None:intergenic | 65.0% | |
| CGCGGCCACAATTGCGGTTG+CGG | - | chr6_3:20682821-20682840 | Msa0944160:intron | 65.0% | |
| GCGGCCACAATTGCGGTTGC+GGG | - | chr6_3:20682822-20682841 | Msa0944160:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 20680974 | 20684468 | 20680974 | ID=Msa0944160;Name=Msa0944160 |
| chr6_3 | mRNA | 20680974 | 20684468 | 20680974 | ID=Msa0944160-mRNA-1;Parent=Msa0944160;Name=Msa0944160-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.5|0.2|1|1|1|5|0|293 |
| chr6_3 | exon | 20684204 | 20684468 | 20684204 | ID=Msa0944160-mRNA-1:exon:6170;Parent=Msa0944160-mRNA-1 |
| chr6_3 | exon | 20683107 | 20683228 | 20683107 | ID=Msa0944160-mRNA-1:exon:6169;Parent=Msa0944160-mRNA-1 |
| chr6_3 | exon | 20682848 | 20683007 | 20682848 | ID=Msa0944160-mRNA-1:exon:6168;Parent=Msa0944160-mRNA-1 |
| chr6_3 | exon | 20681857 | 20682060 | 20681857 | ID=Msa0944160-mRNA-1:exon:6167;Parent=Msa0944160-mRNA-1 |
| chr6_3 | exon | 20680974 | 20681104 | 20680974 | ID=Msa0944160-mRNA-1:exon:6166;Parent=Msa0944160-mRNA-1 |
| chr6_3 | CDS | 20684204 | 20684468 | 20684204 | ID=Msa0944160-mRNA-1:cds;Parent=Msa0944160-mRNA-1 |
| chr6_3 | CDS | 20683107 | 20683228 | 20683107 | ID=Msa0944160-mRNA-1:cds;Parent=Msa0944160-mRNA-1 |
| chr6_3 | CDS | 20682848 | 20683007 | 20682848 | ID=Msa0944160-mRNA-1:cds;Parent=Msa0944160-mRNA-1 |
| chr6_3 | CDS | 20681857 | 20682060 | 20681857 | ID=Msa0944160-mRNA-1:cds;Parent=Msa0944160-mRNA-1 |
| chr6_3 | CDS | 20680974 | 20681104 | 20680974 | ID=Msa0944160-mRNA-1:cds;Parent=Msa0944160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
