AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0944160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0944160 MtrunA17_Chr6g0460971 97.611 293 7 0 1 293 1 293 0.0 597
Msa0944160 MtrunA17_Chr7g0253891 78.723 282 57 3 12 291 1 281 2.45e-162 452
Msa0944160 MtrunA17_Chr6g0452941 49.793 241 112 5 58 291 41 279 6.21e-75 230
Msa0944160 MtrunA17_Chr7g0216881 51.770 226 99 4 58 278 45 265 4.73e-74 228
Msa0944160 MtrunA17_Chr2g0307681 44.177 249 120 6 55 288 25 269 7.35e-67 209
Msa0944160 MtrunA17_Chr2g0320221 40.833 240 125 7 58 288 5 236 3.16e-53 173
Msa0944160 MtrunA17_Chr4g0041281 39.256 242 129 7 57 288 4 237 8.99e-53 172
Msa0944160 MtrunA17_Chr2g0283961 38.843 242 132 6 58 288 4 240 1.73e-50 166
Msa0944160 MtrunA17_Chr5g0426531 35.743 249 130 6 53 289 1 231 5.62e-44 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0944160 AT5G39890.1 52.743 237 101 6 58 290 47 276 4.74e-77 236
Msa0944160 AT5G15120.1 46.457 254 122 7 44 288 43 291 3.21e-73 227
Msa0944160 AT5G39890.2 56.410 195 75 5 58 249 47 234 4.79e-68 212
Msa0944160 AT1G18490.1 40.449 267 142 6 37 288 16 280 9.33e-63 200
Msa0944160 AT3G58670.2 42.917 240 124 6 58 288 5 240 1.11e-56 183
Msa0944160 AT3G58670.3 42.917 240 124 6 58 288 5 240 1.11e-56 183
Msa0944160 AT3G58670.1 42.917 240 124 6 58 288 5 240 1.11e-56 183
Msa0944160 AT2G42670.1 40.336 238 130 5 59 288 6 239 1.68e-55 180
Msa0944160 AT2G42670.2 40.167 239 130 6 59 288 6 240 1.14e-53 175
Msa0944160 AT3G58670.4 48.571 175 86 3 115 288 26 197 3.49e-49 162
Msa0944160 AT2G42670.3 46.203 158 81 3 132 288 18 172 2.01e-40 139

Find 50 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGATGGGATTGAATATT+TGG 0.087793 6_3:-20681003 Msa0944160:CDS
CTCATGCAAGGAAACATTTA+AGG 0.167944 6_3:-20684258 Msa0944160:CDS
TTCTCTTTGAAAATGCTTTC+AGG 0.169239 6_3:+20683153 None:intergenic
AAAATTATCACATTTGTATA+TGG 0.267408 6_3:+20683110 None:intergenic
TTACTTAGTCCAACATCTTC+TGG 0.273780 6_3:+20683195 None:intergenic
TATAGGGAAGTCTCTATAAT+TGG 0.282448 6_3:+20680975 None:intergenic
ACAATCTCTGCCATCATCTT+TGG 0.288346 6_3:+20681894 None:intergenic
TGGAGGTGTATCTATGAAAA+TGG 0.310811 6_3:-20684432 Msa0944160:CDS
CTGCCATCATCTTTGGAATA+AGG 0.310958 6_3:+20681901 None:intergenic
CACAAACTATGTCACATTCT+TGG 0.323808 6_3:-20684203 Msa0944160:intron
TGCATATTAAGTCTTATGAT+TGG 0.357960 6_3:-20682894 Msa0944160:CDS
GTTGATAATCTGATCTTATA+GGG 0.372001 6_3:+20680959 None:intergenic
TGTGCTGTTCTTGATGTCAT+TGG 0.379870 6_3:-20681928 Msa0944160:CDS
TTAACCTTGCTACTATGATA+AGG 0.405817 6_3:+20684320 None:intergenic
GCATATTAAGTCTTATGATT+GGG 0.417877 6_3:-20682893 Msa0944160:CDS
AAAAGTTGGTTATGTGAAAA+GGG 0.420424 6_3:-20684363 Msa0944160:CDS
TGTGGTGAAGGGACAGTGTC+AGG 0.421729 6_3:+20684233 None:intergenic
AACAAATTGTGAGAGACATC+TGG 0.429933 6_3:+20682865 None:intergenic
TAACATATGAAGGAAGATAT+TGG 0.443132 6_3:-20684452 None:intergenic
ATGGATGGGATTGAATATTT+GGG 0.444661 6_3:-20681002 Msa0944160:CDS
GAGTTATGGCTGTGAATTCA+TGG 0.446167 6_3:+20681953 None:intergenic
TTACTGAAAACAGTCATTCC+TGG 0.448277 6_3:+20682934 None:intergenic
AAAGAAGAAAATGAAAGTTA+TGG 0.462932 6_3:-20681062 Msa0944160:CDS
GATGCCAGAAAACTCTCAAA+TGG 0.465281 6_3:-20681021 Msa0944160:CDS
AAGAACAGCACATGGAGTTA+TGG 0.471493 6_3:+20681939 None:intergenic
CCAGAAAACTCTCAAATGGA+TGG 0.498542 6_3:-20681017 Msa0944160:CDS
GAAATTATTTGTCTCATGCA+AGG 0.509216 6_3:-20684270 Msa0944160:CDS
TGAAGTGCTTTATTAGACAT+TGG 0.510691 6_3:+20684293 None:intergenic
TCATTCCTGGGTGATTATGA+AGG 0.514217 6_3:+20682947 None:intergenic
AGGGAAGTCTCTATAATTGG+AGG 0.527159 6_3:+20680978 None:intergenic
TCATGCAAGGAAACATTTAA+GGG 0.532868 6_3:-20684257 Msa0944160:CDS
CCTCCTTATTCCAAAGATGA+TGG 0.537366 6_3:-20681904 Msa0944160:CDS
ATGGTTGTATATGTGACCCT+TGG 0.543482 6_3:+20683129 None:intergenic
TACTGGGAAAAGCAGTGTAA+AGG 0.545686 6_3:+20681854 None:intergenic
TTTGAATACATACATTGAGA+TGG 0.546750 6_3:+20682835 None:intergenic
TACTGAAAACAGTCATTCCT+GGG 0.547209 6_3:+20682935 None:intergenic
CATTCCTGGGTGATTATGAA+GGG 0.558120 6_3:+20682948 None:intergenic
CAGAAAACTCTCAAATGGAT+GGG 0.570322 6_3:-20681016 Msa0944160:CDS
AAGAAAATGAAAGTTATGGA+TGG 0.575704 6_3:-20681058 Msa0944160:CDS
AGGTGTATCTATGAAAATGG+AGG 0.615461 6_3:-20684429 Msa0944160:CDS
AACATGAAGCCAGAAGATGT+TGG 0.636253 6_3:-20683204 Msa0944160:CDS
CCATCATCTTTGGAATAAGG+AGG 0.645071 6_3:+20681904 None:intergenic
CATATGAAGGAAGATATTGG+AGG 0.649850 6_3:-20684449 Msa0944160:CDS
GAAACCTTATCATAGTAGCA+AGG 0.650637 6_3:-20684324 Msa0944160:CDS
ATGACATCAAGAACAGCACA+TGG 0.655518 6_3:+20681931 None:intergenic
GGTGTATCTATGAAAATGGA+GGG 0.655645 6_3:-20684428 Msa0944160:CDS
ATTCCCCTTCATAATCACCC+AGG 0.663619 6_3:-20682952 Msa0944160:CDS
GTATCTATGAAAATGGAGGG+TGG 0.667112 6_3:-20684425 Msa0944160:CDS
ATTCCTGGGTGATTATGAAG+GGG 0.670917 6_3:+20682949 None:intergenic
TACAACACTGAAGTGTCACA+TGG 0.758295 6_3:+20681997 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTTTACAATTTGTT+TGG - chr6_3:20681602-20681621 Msa0944160:intron 10.0%
!!! TACATTTTATTGTAATATAA+AGG + chr6_3:20682731-20682750 None:intergenic 10.0%
!! TTTATATTACAATAAAATGT+AGG - chr6_3:20682730-20682749 Msa0944160:intron 10.0%
!!! TAACAAATTTTATATCATAA+AGG + chr6_3:20683612-20683631 None:intergenic 10.0%
!!! AATTTCCATTAAAATTTTAT+CGG + chr6_3:20684149-20684168 None:intergenic 10.0%
!! ATCAATCAATTTATTATCTT+AGG - chr6_3:20681463-20681482 Msa0944160:intron 15.0%
!!! TATATTTTAGAAATTGAGTA+GGG - chr6_3:20681761-20681780 Msa0944160:intron 15.0%
!! TATATATTTATTCAACCAAT+GGG + chr6_3:20681987-20682006 None:intergenic 15.0%
!! TTATATATTTATTCAACCAA+TGG + chr6_3:20681988-20682007 None:intergenic 15.0%
!! ATTGGTTGAATAAATATATA+AGG - chr6_3:20681987-20682006 Msa0944160:CDS 15.0%
!!! ATAATTATGAACAATACTTT+TGG + chr6_3:20682174-20682193 None:intergenic 15.0%
!! AAAATTATCACATTTGTATA+TGG + chr6_3:20682313-20682332 None:intergenic 15.0%
!! ATTAAATTAATCTCAATTCA+TGG - chr6_3:20682627-20682646 Msa0944160:intron 15.0%
!! TTAAATTAATCTCAATTCAT+GGG - chr6_3:20682628-20682647 Msa0944160:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr6_3:20683759-20683778 Msa0944160:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr6_3:20683760-20683779 Msa0944160:intron 15.0%
!!! ATTTCCATTAAAATTTTATC+GGG + chr6_3:20684148-20684167 None:intergenic 15.0%
!!! TCTCTATTTTGAATTTTTTT+AGG - chr6_3:20684204-20684223 Msa0944160:CDS 15.0%
!!! TTTGAAATTGAGTGTTTAAT+TGG - chr6_3:20681271-20681290 Msa0944160:intron 20.0%
!! TTGTAACACTAACATATAAT+TGG + chr6_3:20681338-20681357 None:intergenic 20.0%
!! ATATACACTAGAAAGATAAA+AGG + chr6_3:20681746-20681765 None:intergenic 20.0%
!!! GTATATTTTAGAAATTGAGT+AGG - chr6_3:20681760-20681779 Msa0944160:intron 20.0%
!!! ACCTTACAAATTTTTTTGTA+GGG + chr6_3:20681798-20681817 None:intergenic 20.0%
!!! GAAATTATTGATGATATTAG+AGG + chr6_3:20681961-20681980 None:intergenic 20.0%
!! ATATATTTATTCAACCAATG+GGG + chr6_3:20681986-20682005 None:intergenic 20.0%
!! TAAATTATTCATCAGACTTT+CGG - chr6_3:20682091-20682110 Msa0944160:intron 20.0%
!!! ATATAACTTTCTTGTTGTTT+GGG + chr6_3:20683062-20683081 None:intergenic 20.0%
!!! TAAAGTCTAAAATGTAAAGT+TGG + chr6_3:20683105-20683124 None:intergenic 20.0%
!! TGTTCATGTTCTTTATTATT+GGG + chr6_3:20683282-20683301 None:intergenic 20.0%
!! TTGTTCATGTTCTTTATTAT+TGG + chr6_3:20683283-20683302 None:intergenic 20.0%
!!! AAAATAAAGTATTGCTTACT+GGG + chr6_3:20683585-20683604 None:intergenic 20.0%
!!! AAAAATAAAGTATTGCTTAC+TGG + chr6_3:20683586-20683605 None:intergenic 20.0%
!!! TAAGAAAAGTGTATAAATGA+AGG - chr6_3:20683694-20683713 Msa0944160:intron 20.0%
!!! AAGAAAAGTGTATAAATGAA+GGG - chr6_3:20683695-20683714 Msa0944160:intron 20.0%
!! AAAAGTGGAATATATTGTAT+TGG - chr6_3:20683718-20683737 Msa0944160:intron 20.0%
!! AAAGTGGAATATATTGTATT+GGG - chr6_3:20683719-20683738 Msa0944160:intron 20.0%
!! GTTGTATTGAAAATTGAAAT+AGG - chr6_3:20683793-20683812 Msa0944160:intron 20.0%
!!! TTATTTAACTCACTTTTAGT+GGG + chr6_3:20683941-20683960 None:intergenic 20.0%
!!! ATTATTTAACTCACTTTTAG+TGG + chr6_3:20683942-20683961 None:intergenic 20.0%
!! GAGTTAAATAATTATAGCAT+TGG - chr6_3:20683950-20683969 Msa0944160:intron 20.0%
!!! TGAAGACTTATGATTTTATA+GGG + chr6_3:20684117-20684136 None:intergenic 20.0%
!!! TTGAAGACTTATGATTTTAT+AGG + chr6_3:20684118-20684137 None:intergenic 20.0%
!!! TAATCCCGATAAAATTTTAA+TGG - chr6_3:20684141-20684160 Msa0944160:intron 20.0%
!! AAAGAAGAAAATGAAAGTTA+TGG - chr6_3:20684358-20684377 Msa0944160:CDS 20.0%
!! AAAAAGTTGGTTATGTGAAA+AGG - chr6_3:20681056-20681075 Msa0944160:CDS 25.0%
!! AAAAGTTGGTTATGTGAAAA+GGG - chr6_3:20681057-20681076 Msa0944160:CDS 25.0%
!! AAATTTTTGTGTCATGTCTT+TGG - chr6_3:20681356-20681375 Msa0944160:intron 25.0%
!!! ATGTGAATGTGGATTTTTTA+AGG - chr6_3:20681413-20681432 Msa0944160:intron 25.0%
! TCCCTACAAAAAAATTTGTA+AGG - chr6_3:20681794-20681813 Msa0944160:intron 25.0%
!!! CACCTTACAAATTTTTTTGT+AGG + chr6_3:20681799-20681818 None:intergenic 25.0%
!!! ATTTTTTTCCTACCTTCAAA+AGG - chr6_3:20682441-20682460 Msa0944160:intron 25.0%
!! TGCATATTAAGTCTTATGAT+TGG - chr6_3:20682526-20682545 Msa0944160:intron 25.0%
!! GCATATTAAGTCTTATGATT+GGG - chr6_3:20682527-20682546 Msa0944160:intron 25.0%
! TTTGAATACATACATTGAGA+TGG + chr6_3:20682588-20682607 None:intergenic 25.0%
!! TTGCTCTAATTTTAAACCAT+GGG + chr6_3:20682693-20682712 None:intergenic 25.0%
! TTATTCCCAAATAATAAGAC+AGG + chr6_3:20682867-20682886 None:intergenic 25.0%
!! AATTTTGAATCAAGATCAGA+CGG + chr6_3:20683010-20683029 None:intergenic 25.0%
!!! GATATAACTTTCTTGTTGTT+TGG + chr6_3:20683063-20683082 None:intergenic 25.0%
!!! TGGACACGAATTTTAATTTA+TGG + chr6_3:20683085-20683104 None:intergenic 25.0%
! TGTATATAATCTTGTACACA+TGG - chr6_3:20683347-20683366 Msa0944160:intron 25.0%
!! TTGAAATAGGTCAGTTATTT+TGG - chr6_3:20683806-20683825 Msa0944160:intron 25.0%
!!! TGAAATAGGTCAGTTATTTT+GGG - chr6_3:20683807-20683826 Msa0944160:intron 25.0%
!!! GGACACTTTTTTTAGAAAAT+GGG - chr6_3:20683828-20683847 Msa0944160:intron 25.0%
! TAATGTTCATGTAACATGAT+AGG - chr6_3:20683914-20683933 Msa0944160:intron 25.0%
! AATGTTCATGTAACATGATA+GGG - chr6_3:20683915-20683934 Msa0944160:intron 25.0%
! TACAAACTACAGTATTATGA+AGG + chr6_3:20684177-20684196 None:intergenic 25.0%
! TCCTTAAAAAATGTCTTTGA+TGG - chr6_3:20684247-20684266 Msa0944160:CDS 25.0%
!!! TCCATCAAAGACATTTTTTA+AGG + chr6_3:20684251-20684270 None:intergenic 25.0%
! ATGATTTCAAATATTGCAGA+TGG - chr6_3:20684319-20684338 Msa0944160:CDS 25.0%
! AAGAAAATGAAAGTTATGGA+TGG - chr6_3:20684362-20684381 Msa0944160:CDS 25.0%
GTTAGACATGTTGAAAAAGT+TGG - chr6_3:20681043-20681062 Msa0944160:CDS 30.0%
TTAACCTTGCTACTATGATA+AGG + chr6_3:20681103-20681122 None:intergenic 30.0%
! TGAAGTGCTTTATTAGACAT+TGG + chr6_3:20681130-20681149 None:intergenic 30.0%
GAAATTATTTGTCTCATGCA+AGG - chr6_3:20681150-20681169 Msa0944160:intron 30.0%
TCATGCAAGGAAACATTTAA+GGG - chr6_3:20681163-20681182 Msa0944160:intron 30.0%
!! CATAGTTTGTGAACATTTTG+TGG + chr6_3:20681208-20681227 None:intergenic 30.0%
!! TTAGCTTTTGCAATTCATCA+AGG - chr6_3:20681541-20681560 Msa0944160:intron 30.0%
! TAGCTTTTGCAATTCATCAA+GGG - chr6_3:20681542-20681561 Msa0944160:intron 30.0%
AAATGGAAACTAGAGAAAGA+AGG + chr6_3:20681676-20681695 None:intergenic 30.0%
CTCGAAAATGTGTTTATAAG+AGG + chr6_3:20681833-20681852 None:intergenic 30.0%
TTAGTTAGATTATCCACCAT+TGG + chr6_3:20681929-20681948 None:intergenic 30.0%
ATTAATTCTACGCAATTCGA+TGG - chr6_3:20682030-20682049 Msa0944160:CDS 30.0%
!!! TTGGTTTGTTTTTTAGCCAT+CGG + chr6_3:20682155-20682174 None:intergenic 30.0%
! TTCTCTTTGAAAATGCTTTC+AGG + chr6_3:20682270-20682289 None:intergenic 30.0%
! CATTTTCAAAGAGAATCCAA+GGG - chr6_3:20682275-20682294 Msa0944160:intron 30.0%
! ATTCTAGCTAGTAATTGCAT+TGG + chr6_3:20682374-20682393 None:intergenic 30.0%
! GTTGCTCTAATTTTAAACCA+TGG + chr6_3:20682694-20682713 None:intergenic 30.0%
! GTTGACCTGTCTTATTATTT+GGG - chr6_3:20682859-20682878 Msa0944160:CDS 30.0%
! TCATGGGATCTAAATGTTTT+AGG + chr6_3:20683167-20683186 None:intergenic 30.0%
TGTCGCACTAAATAAAAAGT+GGG + chr6_3:20683246-20683265 None:intergenic 30.0%
ATGTCGCACTAAATAAAAAG+TGG + chr6_3:20683247-20683266 None:intergenic 30.0%
TGTATAAATGAAGGGAAAAG+TGG - chr6_3:20683703-20683722 Msa0944160:intron 30.0%
!!! GGGACACTTTTTTTAGAAAA+TGG - chr6_3:20683827-20683846 Msa0944160:intron 30.0%
AATGGATGGGATTGAATATT+TGG - chr6_3:20684417-20684436 Msa0944160:CDS 30.0%
ATGGATGGGATTGAATATTT+GGG - chr6_3:20684418-20684437 Msa0944160:CDS 30.0%
TATAGGGAAGTCTCTATAAT+TGG + chr6_3:20684448-20684467 None:intergenic 30.0%
! TGGAGGTGTATCTATGAAAA+TGG - chr6_3:20680988-20681007 Msa0944160:CDS 35.0%
AGGTGTATCTATGAAAATGG+AGG - chr6_3:20680991-20681010 Msa0944160:CDS 35.0%
GGTGTATCTATGAAAATGGA+GGG - chr6_3:20680992-20681011 Msa0944160:CDS 35.0%
AAAGGGTCATTGTCAAAAAG+AGG - chr6_3:20681074-20681093 Msa0944160:CDS 35.0%
GAAACCTTATCATAGTAGCA+AGG - chr6_3:20681096-20681115 Msa0944160:intron 35.0%
CTCATGCAAGGAAACATTTA+AGG - chr6_3:20681162-20681181 Msa0944160:intron 35.0%
! TGTGAACATTTTGTGGTGAA+GGG + chr6_3:20681201-20681220 None:intergenic 35.0%
! TTGTGAACATTTTGTGGTGA+AGG + chr6_3:20681202-20681221 None:intergenic 35.0%
CACAAACTATGTCACATTCT+TGG - chr6_3:20681217-20681236 Msa0944160:intron 35.0%
!! TTGTGTCATGTCTTTGGAAT+TGG - chr6_3:20681362-20681381 Msa0944160:intron 35.0%
TGTTTGTCCTTTCACATTGT+TGG - chr6_3:20681500-20681519 Msa0944160:intron 35.0%
GTTTGTCCTTTCACATTGTT+GGG - chr6_3:20681501-20681520 Msa0944160:intron 35.0%
ATCAATAATTTCCACCCCAT+TGG - chr6_3:20681969-20681988 Msa0944160:CDS 35.0%
TATTTATTCAACCAATGGGG+TGG + chr6_3:20681983-20682002 None:intergenic 35.0%
!!! TGGTTTGTTTTTTAGCCATC+GGG + chr6_3:20682154-20682173 None:intergenic 35.0%
TTACTTAGTCCAACATCTTC+TGG + chr6_3:20682228-20682247 None:intergenic 35.0%
! GCATTTTCAAAGAGAATCCA+AGG - chr6_3:20682274-20682293 Msa0944160:intron 35.0%
!! GAATTACTCCTTTTGAAGGT+AGG + chr6_3:20682452-20682471 None:intergenic 35.0%
TACTGAAAACAGTCATTCCT+GGG + chr6_3:20682488-20682507 None:intergenic 35.0%
TTACTGAAAACAGTCATTCC+TGG + chr6_3:20682489-20682508 None:intergenic 35.0%
! TGTTTTCAGTAAGCTTCTGT+TGG - chr6_3:20682497-20682516 Msa0944160:intron 35.0%
! GTTTTCAGTAAGCTTCTGTT+GGG - chr6_3:20682498-20682517 Msa0944160:intron 35.0%
AACAAATTGTGAGAGACATC+TGG + chr6_3:20682558-20682577 None:intergenic 35.0%
! TCTAATTTTAAACCATGGGC+AGG + chr6_3:20682689-20682708 None:intergenic 35.0%
! CGTTGACCTGTCTTATTATT+TGG - chr6_3:20682858-20682877 Msa0944160:CDS 35.0%
! GATTACCGAAATTTAGAACG+TGG - chr6_3:20682983-20683002 Msa0944160:CDS 35.0%
CTTGATTCAAAATTCAGACG+AGG - chr6_3:20683016-20683035 Msa0944160:intron 35.0%
! ATGGTTCACGTTCTGAATTT+CGG + chr6_3:20683131-20683150 None:intergenic 35.0%
TTTAGGCAATATCAGACGAA+TGG + chr6_3:20683150-20683169 None:intergenic 35.0%
CACACATTTGATGCAATCAT+GGG + chr6_3:20683183-20683202 None:intergenic 35.0%
TCACACATTTGATGCAATCA+TGG + chr6_3:20683184-20683203 None:intergenic 35.0%
GGAATACACATCCTATTTGA+TGG - chr6_3:20683218-20683237 Msa0944160:intron 35.0%
GTCGCACTAAATAAAAAGTG+GGG + chr6_3:20683245-20683264 None:intergenic 35.0%
!!! ACATGGTATTTTTTGCAGTG+AGG - chr6_3:20683364-20683383 Msa0944160:intron 35.0%
TCAGTGTTGTATCCAAAAAC+TGG - chr6_3:20683435-20683454 Msa0944160:intron 35.0%
CAAAGTAGGTCAATTATACC+GGG + chr6_3:20683659-20683678 None:intergenic 35.0%
CCAAAGTAGGTCAATTATAC+CGG + chr6_3:20683660-20683679 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG + chr6_3:20683673-20683692 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG - chr6_3:20683841-20683860 Msa0944160:intron 35.0%
CAGAAAACTCTCAAATGGAT+GGG - chr6_3:20684404-20684423 Msa0944160:CDS 35.0%
GTATCTATGAAAATGGAGGG+TGG - chr6_3:20680995-20681014 Msa0944160:CDS 40.0%
TGCATGTTGTGATGTGAATG+TGG - chr6_3:20681402-20681421 Msa0944160:intron 40.0%
CATCTTCCCAACAATGTGAA+AGG + chr6_3:20681510-20681529 None:intergenic 40.0%
AATGTAGAGCGTGATTTGAG+TGG - chr6_3:20681902-20681921 Msa0944160:CDS 40.0%
GTGGATAATCTAACTAACCG+TGG - chr6_3:20681932-20681951 Msa0944160:CDS 40.0%
!! GATGATATTAGAGGTGTCCA+CGG + chr6_3:20681952-20681971 None:intergenic 40.0%
GGCTGAACTCTGAATTATCA+TGG - chr6_3:20682112-20682131 Msa0944160:intron 40.0%
!! TTCTTTCCTTTAAAGCCCGA+TGG - chr6_3:20682136-20682155 Msa0944160:intron 40.0%
!! TTTTAGCCATCGGGCTTTAA+AGG + chr6_3:20682145-20682164 None:intergenic 40.0%
AACATGAAGCCAGAAGATGT+TGG - chr6_3:20682216-20682235 Msa0944160:intron 40.0%
ATGGTTGTATATGTGACCCT+TGG + chr6_3:20682294-20682313 None:intergenic 40.0%
! AGGGGAATTACTCCTTTTGA+AGG + chr6_3:20682456-20682475 None:intergenic 40.0%
ATTCCTGGGTGATTATGAAG+GGG + chr6_3:20682474-20682493 None:intergenic 40.0%
CATTCCTGGGTGATTATGAA+GGG + chr6_3:20682475-20682494 None:intergenic 40.0%
TCATTCCTGGGTGATTATGA+AGG + chr6_3:20682476-20682495 None:intergenic 40.0%
! ACGGTCCACGTTCTAAATTT+CGG + chr6_3:20682991-20683010 None:intergenic 40.0%
TGTGTGATTTCGTAACAACG+AGG - chr6_3:20683197-20683216 Msa0944160:CDS 40.0%
AAAAGTGGGGTCCATCAAAT+AGG + chr6_3:20683232-20683251 None:intergenic 40.0%
!!! GGTATTTTTTGCAGTGAGGT+TGG - chr6_3:20683368-20683387 Msa0944160:intron 40.0%
! TACAACACTGAAGTGTCACA+TGG + chr6_3:20683426-20683445 None:intergenic 40.0%
GTGTTGTATCCAAAAACTGG+AGG - chr6_3:20683438-20683457 Msa0944160:intron 40.0%
! TGGATATTGCCTCCAGTTTT+TGG + chr6_3:20683450-20683469 None:intergenic 40.0%
GAGTTATGGCTGTGAATTCA+TGG + chr6_3:20683470-20683489 None:intergenic 40.0%
AAGAACAGCACATGGAGTTA+TGG + chr6_3:20683484-20683503 None:intergenic 40.0%
ATGACATCAAGAACAGCACA+TGG + chr6_3:20683492-20683511 None:intergenic 40.0%
! TGTGCTGTTCTTGATGTCAT+TGG - chr6_3:20683492-20683511 Msa0944160:intron 40.0%
!! CCATCATCTTTGGAATAAGG+AGG + chr6_3:20683519-20683538 None:intergenic 40.0%
CCTCCTTATTCCAAAGATGA+TGG - chr6_3:20683516-20683535 Msa0944160:intron 40.0%
!! CTGCCATCATCTTTGGAATA+AGG + chr6_3:20683522-20683541 None:intergenic 40.0%
ACAATCTCTGCCATCATCTT+TGG + chr6_3:20683529-20683548 None:intergenic 40.0%
TACTGGGAAAAGCAGTGTAA+AGG + chr6_3:20683569-20683588 None:intergenic 40.0%
CCGGTATAATTGACCTACTT+TGG - chr6_3:20683657-20683676 Msa0944160:intron 40.0%
GAAAATGGGTCAGTTATTCC+GGG - chr6_3:20683842-20683861 Msa0944160:intron 40.0%
! ACGGAGGGAGTATAGTTTAT+GGG - chr6_3:20683865-20683884 Msa0944160:intron 40.0%
GATGCCAGAAAACTCTCAAA+TGG - chr6_3:20684399-20684418 Msa0944160:CDS 40.0%
! CCATCCATTTGAGAGTTTTC+TGG + chr6_3:20684406-20684425 None:intergenic 40.0%
CCAGAAAACTCTCAAATGGA+TGG - chr6_3:20684403-20684422 Msa0944160:CDS 40.0%
AGGGAAGTCTCTATAATTGG+AGG + chr6_3:20684445-20684464 None:intergenic 40.0%
ACGCTCTACATTAAGCGTGA+GGG + chr6_3:20681894-20681913 None:intergenic 45.0%
TGATTTGAGTGGTCCAATGG+TGG - chr6_3:20681913-20681932 Msa0944160:CDS 45.0%
ATTCCCCTTCATAATCACCC+AGG - chr6_3:20682468-20682487 Msa0944160:intron 45.0%
TTCTTTGTAACACCTGCCCA+TGG - chr6_3:20682674-20682693 Msa0944160:intron 45.0%
AACCTCAAGTGAGGTTGCAT+CGG + chr6_3:20682765-20682784 None:intergenic 45.0%
!! CCTCTAAAATTGTTGCACCG+CGG - chr6_3:20682803-20682822 Msa0944160:intron 45.0%
! CGGAGGGAGTATATGTATCA+TGG + chr6_3:20683635-20683654 None:intergenic 45.0%
GTAGGTCAATTATACCGGGA+CGG + chr6_3:20683655-20683674 None:intergenic 45.0%
! GACGGAGGGAGTATAGTTTA+TGG - chr6_3:20683864-20683883 Msa0944160:intron 45.0%
!!! ATGTTATTTTAATTTTTAAA+TGG + chr6_3:20681693-20681712 None:intergenic 5.0%
GCTCTACATTAAGCGTGAGG+GGG + chr6_3:20681892-20681911 None:intergenic 50.0%
CGCTCTACATTAAGCGTGAG+GGG + chr6_3:20681893-20681912 None:intergenic 50.0%
CACGCTCTACATTAAGCGTG+AGG + chr6_3:20681895-20681914 None:intergenic 50.0%
GCGTGATTTGAGTGGTCCAA+TGG - chr6_3:20681910-20681929 Msa0944160:CDS 50.0%
CGACATTGCAACCTCAAGTG+AGG + chr6_3:20682774-20682793 None:intergenic 50.0%
! CCGCGGTGCAACAATTTTAG+AGG + chr6_3:20682806-20682825 None:intergenic 50.0%
TACATATACTCCCTCCGTCC+CGG - chr6_3:20683638-20683657 Msa0944160:intron 50.0%
GTCAATTATACCGGGACGGA+GGG + chr6_3:20683651-20683670 None:intergenic 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr6_3:20683846-20683865 Msa0944160:intron 50.0%
AAACTATACTCCCTCCGTCC+CGG + chr6_3:20683863-20683882 None:intergenic 50.0%
TGTGGTGAAGGGACAGTGTC+AGG + chr6_3:20681190-20681209 None:intergenic 55.0%
GACCGATGCAACCTCACTTG+AGG - chr6_3:20682760-20682779 Msa0944160:intron 55.0%
GGTCAATTATACCGGGACGG+AGG + chr6_3:20683652-20683671 None:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr6_3:20683850-20683869 Msa0944160:intron 55.0%
TTGCACCGCGGCCACAATTG+CGG - chr6_3:20682815-20682834 Msa0944160:intron 60.0%
TTCGCCCGCAACCGCAATTG+TGG + chr6_3:20682829-20682848 None:intergenic 60.0%
GGTCAGTTATTCCGGGACGG+AGG - chr6_3:20683849-20683868 Msa0944160:intron 60.0%
CGCAACCGCAATTGTGGCCG+CGG + chr6_3:20682823-20682842 None:intergenic 65.0%
CGCGGCCACAATTGCGGTTG+CGG - chr6_3:20682821-20682840 Msa0944160:intron 65.0%
GCGGCCACAATTGCGGTTGC+GGG - chr6_3:20682822-20682841 Msa0944160:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 20680974 20684468 20680974 ID=Msa0944160;Name=Msa0944160
chr6_3 mRNA 20680974 20684468 20680974 ID=Msa0944160-mRNA-1;Parent=Msa0944160;Name=Msa0944160-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.5|0.2|1|1|1|5|0|293
chr6_3 exon 20684204 20684468 20684204 ID=Msa0944160-mRNA-1:exon:6170;Parent=Msa0944160-mRNA-1
chr6_3 exon 20683107 20683228 20683107 ID=Msa0944160-mRNA-1:exon:6169;Parent=Msa0944160-mRNA-1
chr6_3 exon 20682848 20683007 20682848 ID=Msa0944160-mRNA-1:exon:6168;Parent=Msa0944160-mRNA-1
chr6_3 exon 20681857 20682060 20681857 ID=Msa0944160-mRNA-1:exon:6167;Parent=Msa0944160-mRNA-1
chr6_3 exon 20680974 20681104 20680974 ID=Msa0944160-mRNA-1:exon:6166;Parent=Msa0944160-mRNA-1
chr6_3 CDS 20684204 20684468 20684204 ID=Msa0944160-mRNA-1:cds;Parent=Msa0944160-mRNA-1
chr6_3 CDS 20683107 20683228 20683107 ID=Msa0944160-mRNA-1:cds;Parent=Msa0944160-mRNA-1
chr6_3 CDS 20682848 20683007 20682848 ID=Msa0944160-mRNA-1:cds;Parent=Msa0944160-mRNA-1
chr6_3 CDS 20681857 20682060 20681857 ID=Msa0944160-mRNA-1:cds;Parent=Msa0944160-mRNA-1
chr6_3 CDS 20680974 20681104 20680974 ID=Msa0944160-mRNA-1:cds;Parent=Msa0944160-mRNA-1
Gene Sequence

>Msa0944160

ATGAAGGAAGATATTGGAGGTGTATCTATGAAAATGGAGGGTGGTTTAGTAGAAAAAAATGAAGAAAGAGTTAGACATGTTGAAAAAGTTGGTTATGTGAAAAGGGTCATTGTCAAAAAGAGGAAACCTTATCATAGTAGCAAGGTTAAGAAGCCAATGTCTAATAAAGCACTTCAGAAATTATTTGTCTCATGCAAGGAAACATTTAAGGGACCTGACACTGTCCCTTCACCACAAAATGTTCACAAACTATGTCACATTCTTGATAACATGAAGCCAGAAGATGTTGGACTAAGTAAAGATTTGCAGTTCTTCAAACCTGAAAGCATTTTCAAAGAGAATCCAAGGGTCACATATACAACCATATACAAATGTGATAATTTTTCACTATGTATTTTTTTCCTACCTTCAAAAGGAGTAATTCCCCTTCATAATCACCCAGGAATGACTGTTTTCAGTAAGCTTCTGTTGGGACAAATGCATATTAAGTCTTATGATTGGGTTGATCCAGATGTCTCTCACAATTTGTTGAAGCAACCATCTCAATTGAGGTTGGCAAAGTTAAAAGCTAATAAAGTGTTCACATCACCATGTGACACTTCAGTGTTGTATCCAAAAACTGGAGGCAATATCCATGAATTCACAGCCATAACTCCATGTGCTGTTCTTGATGTCATTGGACCTCCTTATTCCAAAGATGATGGCAGAGATTGTTCTTACTACAGAGATCACCTTTACACTGCTTTTCCCAATGGAGAAATTGCTGAGTTGAAAGAAGAAAATGAAAGTTATGGATGGTTAGAAGAAATAGAGATGCCAGAAAACTCTCAAATGGATGGGATTGAATATTTGGGTCCTCCAATTATAGAGACTTCCCTATAA

Protein sequence

>Msa0944160

MKEDIGGVSMKMEGGLVEKNEERVRHVEKVGYVKRVIVKKRKPYHSSKVKKPMSNKALQKLFVSCKETFKGPDTVPSPQNVHKLCHILDNMKPEDVGLSKDLQFFKPESIFKENPRVTYTTIYKCDNFSLCIFFLPSKGVIPLHNHPGMTVFSKLLLGQMHIKSYDWVDPDVSHNLLKQPSQLRLAKLKANKVFTSPCDTSVLYPKTGGNIHEFTAITPCAVLDVIGPPYSKDDGRDCSYYRDHLYTAFPNGEIAELKEENESYGWLEEIEMPENSQMDGIEYLGPPIIETSL*