Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465420 | XP_003601269.1 | 96.024 | 327 | 10 | 1 | 1 | 324 | 1 | 327 | 0.0 | 645 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465420 | sp|Q9ZUD9|SRO2_ARATH | 38.214 | 280 | 160 | 3 | 47 | 314 | 45 | 323 | 9.66e-63 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465420 | G7J5G4 | 96.024 | 327 | 10 | 1 | 1 | 324 | 1 | 327 | 0.0 | 645 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021400 | Msa0465420 | 0.820663 | 6.090272e-53 | -8.615850e-47 |
| Msa0029700 | Msa0465420 | 0.807855 | 4.122483e-50 | -8.615850e-47 |
| Msa0064960 | Msa0465420 | 0.854094 | 1.547417e-61 | -8.615850e-47 |
| Msa0080020 | Msa0465420 | 0.807382 | 5.193900e-50 | -8.615850e-47 |
| Msa0100200 | Msa0465420 | 0.806786 | 6.944143e-50 | -8.615850e-47 |
| Msa0110240 | Msa0465420 | 0.811915 | 5.512503e-51 | -8.615850e-47 |
| Msa0124960 | Msa0465420 | 0.802914 | 4.474336e-49 | -8.615850e-47 |
| Msa0154730 | Msa0465420 | 0.801478 | 8.837080e-49 | -8.615850e-47 |
| Msa0238140 | Msa0465420 | 0.808920 | 2.443071e-50 | -8.615850e-47 |
| Msa0369660 | Msa0465420 | 0.807169 | 5.762624e-50 | -8.615850e-47 |
| Msa0375550 | Msa0465420 | 0.806945 | 6.428201e-50 | -8.615850e-47 |
| Msa0427850 | Msa0465420 | 0.839227 | 1.797732e-57 | -8.615850e-47 |
| Msa0434140 | Msa0465420 | 0.818015 | 2.443795e-52 | -8.615850e-47 |
| Msa0465420 | Msa0474080 | 0.829660 | 4.545152e-55 | -8.615850e-47 |
| Msa0465420 | Msa0477660 | 0.809023 | 2.322376e-50 | -8.615850e-47 |
| Msa0465420 | Msa0482360 | 0.804206 | 2.414765e-49 | -8.615850e-47 |
| Msa0465420 | Msa0511280 | 0.979455 | 5.262079e-148 | -8.615850e-47 |
| Msa0465420 | Msa0511380 | 0.936075 | 3.096348e-97 | -8.615850e-47 |
| Msa0465420 | Msa0521720 | 0.811207 | 7.859050e-51 | -8.615850e-47 |
| Msa0465420 | Msa0735340 | 0.814814 | 1.271726e-51 | -8.615850e-47 |
| Msa0465420 | Msa0777210 | 0.823549 | 1.304571e-53 | -8.615850e-47 |
| Msa0465420 | Msa0814350 | 0.826315 | 2.901366e-54 | -8.615850e-47 |
| Msa0465420 | Msa0854860 | 0.803135 | 4.028684e-49 | -8.615850e-47 |
| Msa0465420 | Msa0878410 | 0.835992 | 1.215112e-56 | -8.615850e-47 |
| Msa0465420 | Msa0882360 | 0.805852 | 1.092869e-49 | -8.615850e-47 |
| Msa0465420 | Msa0944160 | 0.802535 | 5.357650e-49 | -8.615850e-47 |
| Msa0465420 | Msa0947420 | 0.828682 | 7.849443e-55 | -8.615850e-47 |
| Msa0465420 | Msa0947520 | 0.805204 | 1.494638e-49 | -8.615850e-47 |
| Msa0465420 | Msa0980490 | 0.801745 | 7.790260e-49 | -8.615850e-47 |
| Msa0465420 | Msa1026970 | 0.825905 | 3.631829e-54 | -8.615850e-47 |
| Msa0465420 | Msa1049810 | 0.801203 | 1.005753e-48 | -8.615850e-47 |
| Msa0465420 | Msa1081650 | -0.803586 | 3.248101e-49 | -8.615850e-47 |
| Msa0465420 | Msa1154310 | 0.831319 | 1.786097e-55 | -8.615850e-47 |
| Msa0465420 | Msa1171720 | 0.982507 | 2.867393e-155 | -8.615850e-47 |
| Msa0465420 | Msa1187160 | 0.812126 | 4.958105e-51 | -8.615850e-47 |
| Msa0465420 | Msa1213860 | 0.802042 | 6.769466e-49 | -8.615850e-47 |
| Msa0465420 | Msa1251500 | 0.812128 | 4.953255e-51 | -8.615850e-47 |
| Msa0465420 | Msa1258600 | 0.835035 | 2.121491e-56 | -8.615850e-47 |
| Msa0465420 | Msa1298440 | 0.837996 | 3.738264e-57 | -8.615850e-47 |
| Msa0465420 | Msa1321840 | 0.808864 | 2.511243e-50 | -8.615850e-47 |
| Msa0465420 | Msa1359520 | 0.810064 | 1.387555e-50 | -8.615850e-47 |
| Msa0465420 | Msa1375640 | 0.809072 | 2.266781e-50 | -8.615850e-47 |
| Msa0465420 | Msa1375730 | 0.801814 | 7.538452e-49 | -8.615850e-47 |
| Msa0465420 | Msa1376520 | 0.814505 | 1.488561e-51 | -8.615850e-47 |
| Msa0465420 | Msa1400940 | 0.836171 | 1.094018e-56 | -8.615850e-47 |
| Msa0465420 | Msa1402000 | 0.811425 | 7.047891e-51 | -8.615850e-47 |
| Msa0465420 | Msa1429190 | 0.802294 | 6.006110e-49 | -8.615850e-47 |
| Msa0311130 | Msa0465420 | -0.807955 | 3.924473e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465420 | MtrunA17_Chr3g0117631 | 96.024 | 327 | 10 | 1 | 1 | 324 | 1 | 327 | 0.0 | 645 |
| Msa0465420 | MtrunA17_Chr4g0059061 | 49.363 | 314 | 143 | 5 | 9 | 318 | 11 | 312 | 7.23e-102 | 302 |
| Msa0465420 | MtrunA17_Chr8g0380321 | 35.507 | 276 | 166 | 4 | 39 | 303 | 5 | 279 | 1.77e-53 | 177 |
| Msa0465420 | MtrunA17_Chr1g0210871 | 28.402 | 338 | 193 | 6 | 6 | 299 | 223 | 555 | 7.73e-39 | 144 |
| Msa0465420 | MtrunA17_Chr5g0412301 | 29.969 | 327 | 173 | 8 | 20 | 300 | 233 | 549 | 1.77e-36 | 137 |
| Msa0465420 | MtrunA17_Chr5g0410781 | 32.258 | 186 | 112 | 6 | 58 | 234 | 64 | 244 | 1.69e-27 | 107 |
| Msa0465420 | MtrunA17_Chr7g0217951 | 33.333 | 174 | 103 | 5 | 64 | 228 | 257 | 426 | 2.23e-26 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465420 | AT1G23550.1 | 38.214 | 280 | 160 | 3 | 47 | 314 | 45 | 323 | 9.82e-64 | 204 |
| Msa0465420 | AT3G47720.1 | 36.893 | 309 | 171 | 8 | 10 | 304 | 8 | 306 | 1.63e-56 | 186 |
| Msa0465420 | AT5G62520.1 | 40.672 | 268 | 141 | 8 | 47 | 304 | 42 | 301 | 1.35e-54 | 181 |
| Msa0465420 | AT1G70440.2 | 31.908 | 304 | 185 | 7 | 20 | 307 | 7 | 304 | 1.84e-47 | 162 |
| Msa0465420 | AT1G70440.1 | 31.908 | 304 | 185 | 7 | 20 | 307 | 7 | 304 | 1.84e-47 | 162 |
| Msa0465420 | AT1G32230.6 | 31.561 | 301 | 155 | 7 | 58 | 312 | 276 | 571 | 2.41e-40 | 149 |
| Msa0465420 | AT1G32230.4 | 31.561 | 301 | 155 | 7 | 58 | 312 | 276 | 571 | 2.41e-40 | 149 |
| Msa0465420 | AT1G32230.2 | 31.561 | 301 | 155 | 7 | 58 | 312 | 276 | 571 | 2.41e-40 | 149 |
| Msa0465420 | AT1G32230.5 | 31.561 | 301 | 155 | 7 | 58 | 312 | 276 | 571 | 2.41e-40 | 149 |
| Msa0465420 | AT1G32230.1 | 31.457 | 302 | 155 | 7 | 58 | 312 | 276 | 572 | 2.92e-40 | 149 |
| Msa0465420 | AT1G32230.3 | 31.849 | 292 | 148 | 7 | 58 | 303 | 276 | 562 | 7.58e-40 | 147 |
| Msa0465420 | AT5G62520.2 | 40.104 | 192 | 100 | 7 | 47 | 228 | 42 | 228 | 2.09e-37 | 134 |
| Msa0465420 | AT2G35510.1 | 29.904 | 311 | 151 | 8 | 48 | 303 | 262 | 560 | 1.10e-31 | 124 |
| Msa0465420 | AT2G35510.3 | 29.904 | 311 | 151 | 8 | 48 | 303 | 262 | 560 | 1.10e-31 | 124 |
| Msa0465420 | AT2G35510.2 | 32.642 | 193 | 111 | 4 | 48 | 230 | 262 | 445 | 1.73e-25 | 106 |
Find 69 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATACTGTGCAGGGTTATTT+TGG | 0.115015 | 3_3:+65835475 | Msa0465420:CDS |
| AGTTGTGCCGATTATGATTC+TGG | 0.194351 | 3_3:+65835542 | Msa0465420:CDS |
| CGAATCTCCACCGCGAAGTT+TGG | 0.267880 | 3_3:-65834462 | None:intergenic |
| TTCTCCTAACCTAACTAAAA+AGG | 0.275442 | 3_3:-65834282 | None:intergenic |
| CTTTGTAGAACTTGCAAATC+AGG | 0.284073 | 3_3:-65835880 | None:intergenic |
| CTCCAACTAAGTACATGATT+TGG | 0.368420 | 3_3:+65835582 | Msa0465420:CDS |
| CTAAAGACGAGGTTTCTTCA+TGG | 0.400145 | 3_3:+65834326 | Msa0465420:CDS |
| GACGAGGTTTCTTCATGGCT+TGG | 0.402614 | 3_3:+65834331 | Msa0465420:CDS |
| ACGAGGTTTCTTCATGGCTT+GGG | 0.407523 | 3_3:+65834332 | Msa0465420:CDS |
| TTCTTCGCCGGTGGTGGTGG+CGG | 0.412701 | 3_3:-65834231 | None:intergenic |
| CAAGTTCTACAAAGCTAGAA+AGG | 0.426903 | 3_3:+65835889 | Msa0465420:CDS |
| GTAGAATGAATACTCATGTT+TGG | 0.434386 | 3_3:+65835609 | Msa0465420:CDS |
| ACTGGTGAGAATGACGTTAG+AGG | 0.440885 | 3_3:+65834512 | Msa0465420:CDS |
| CATCATGATCCCATTCCTCT+TGG | 0.443393 | 3_3:-65834157 | None:intergenic |
| GTTGTGCCGATTATGATTCT+GGG | 0.444710 | 3_3:+65835543 | Msa0465420:CDS |
| CTTTGAAGAGGAGAATCATC+TGG | 0.446663 | 3_3:-65834587 | None:intergenic |
| TTCAAGGTTTCTTCTTTGAA+AGG | 0.449498 | 3_3:+65835650 | Msa0465420:CDS |
| CTCCAAATCATGTACTTAGT+TGG | 0.452958 | 3_3:-65835584 | None:intergenic |
| TTGTTCTTCGCCGGTGGTGG+TGG | 0.454132 | 3_3:-65834234 | None:intergenic |
| ATCAAGTTGTGGCGAAACCT+TGG | 0.465639 | 3_3:-65835852 | None:intergenic |
| TGAGGCATTTGATACTGTGC+AGG | 0.465779 | 3_3:+65835465 | Msa0465420:CDS |
| GGAGGAGTCTTCACCGATGC+TGG | 0.466913 | 3_3:-65834180 | None:intergenic |
| TTTGCAGCGGTTGAGATTGA+AGG | 0.470522 | 3_3:+65835773 | Msa0465420:intron |
| ATCAACCCCAGAATCATAAT+CGG | 0.471467 | 3_3:-65835549 | None:intergenic |
| TATGGAATTCCAAGAGGAAT+GGG | 0.475448 | 3_3:+65834148 | None:intergenic |
| ATAGAAATCAAAGTCGGAAA+AGG | 0.484157 | 3_3:-65835824 | None:intergenic |
| TGCGAGACCAACTTCACCTT+CGG | 0.491538 | 3_3:+65835799 | Msa0465420:CDS |
| ACCGCTTTCGCAGTCGGAAA+CGG | 0.496051 | 3_3:-65834204 | None:intergenic |
| TTTGATTTCTATGCTTTCCA+AGG | 0.497741 | 3_3:+65835835 | Msa0465420:CDS |
| GAATCATAATCGGCACAACT+TGG | 0.501035 | 3_3:-65835539 | None:intergenic |
| TATGCTTGGTATGGAGCTAC+TGG | 0.501397 | 3_3:+65834494 | Msa0465420:CDS |
| TTCGCAGTCGGAAACGGTGG+AGG | 0.502683 | 3_3:-65834198 | None:intergenic |
| TCGAAGCCGCGCCTGTGAAA+CGG | 0.510220 | 3_3:-65834411 | None:intergenic |
| TTGAAGCTTAAAACATATGC+AGG | 0.515889 | 3_3:-65835632 | None:intergenic |
| CAGCAAGCAAGGTCAAAGAA+TGG | 0.519355 | 3_3:+65837086 | Msa0465420:CDS |
| TAAAGAACTAACCTTTGAAG+AGG | 0.520559 | 3_3:-65834599 | None:intergenic |
| TTTGTAGAACTTGCAAATCA+GGG | 0.522828 | 3_3:-65835879 | None:intergenic |
| GTGTTCTGACGCCGTTTCAC+AGG | 0.529220 | 3_3:+65834400 | Msa0465420:CDS |
| AACGGTTTCAGTCATGTCCA+TGG | 0.529234 | 3_3:+65834545 | Msa0465420:CDS |
| GAAGAAACCTCGTCTTTAGT+AGG | 0.529434 | 3_3:-65834322 | None:intergenic |
| TCGTTGTTCTTCGCCGGTGG+TGG | 0.529479 | 3_3:-65834237 | None:intergenic |
| AGTTGTGCTGTTGGCAGAGA+TGG | 0.530261 | 3_3:+65835440 | Msa0465420:CDS |
| CTATGGAATTCCAAGAGGAA+TGG | 0.530385 | 3_3:+65834147 | None:intergenic |
| ACCGTTTCCGACTGCGAAAG+CGG | 0.530594 | 3_3:+65834203 | Msa0465420:CDS |
| GGTGTTTCCGCCACCACCAC+CGG | 0.531519 | 3_3:+65834224 | Msa0465420:CDS |
| GTTAGAGGCATTCTATCAAA+CGG | 0.543708 | 3_3:+65834527 | Msa0465420:CDS |
| ATTCGAATGTGAAATATGCT+TGG | 0.547805 | 3_3:+65834480 | Msa0465420:CDS |
| CAGATGATTCTCCTCTTCAA+AGG | 0.551412 | 3_3:+65834588 | Msa0465420:CDS |
| AATGTGAAATATGCTTGGTA+TGG | 0.558383 | 3_3:+65834485 | Msa0465420:CDS |
| TCGTTGTCGTTGTTCTTCGC+CGG | 0.558549 | 3_3:-65834243 | None:intergenic |
| GGAAACACCGCTTTCGCAGT+CGG | 0.561570 | 3_3:-65834210 | None:intergenic |
| GAAGCTGTTTCCAAACTTCG+CGG | 0.562465 | 3_3:+65834452 | Msa0465420:CDS |
| TTGTCGTTGTTCTTCGCCGG+TGG | 0.567729 | 3_3:-65834240 | None:intergenic |
| AAAGGCACCGAAGGTGAAGT+TGG | 0.570890 | 3_3:-65835806 | None:intergenic |
| CTGACGCCGTTTCACAGGCG+CGG | 0.588804 | 3_3:+65834405 | Msa0465420:CDS |
| ACGGTTTCAGTCATGTCCAT+GGG | 0.601023 | 3_3:+65834546 | Msa0465420:CDS |
| TGGGATCATGATGCCAGCAT+CGG | 0.605132 | 3_3:+65834167 | Msa0465420:CDS |
| AAAGTCGGAAAAGGCACCGA+AGG | 0.610022 | 3_3:-65835815 | None:intergenic |
| GAAAGCATAGAAATCAAAGT+CGG | 0.616257 | 3_3:-65835830 | None:intergenic |
| AGAGACAGATGCTATTCCCA+TGG | 0.619618 | 3_3:-65834562 | None:intergenic |
| GAGGCATTTGATACTGTGCA+GGG | 0.621915 | 3_3:+65835466 | Msa0465420:CDS |
| ATCAGGGCAATATCAAGTTG+TGG | 0.630687 | 3_3:-65835863 | None:intergenic |
| GCTTTCGCAGTCGGAAACGG+TGG | 0.645384 | 3_3:-65834201 | None:intergenic |
| CATTAAGTATTATAGAGCCA+AGG | 0.648089 | 3_3:+65836092 | Msa0465420:CDS |
| TTGTGCCGATTATGATTCTG+GGG | 0.648366 | 3_3:+65835544 | Msa0465420:CDS |
| TTCACGACCTACTAAAGACG+AGG | 0.669260 | 3_3:+65834315 | Msa0465420:CDS |
| GCTGTTTCCAAACTTCGCGG+TGG | 0.670880 | 3_3:+65834455 | Msa0465420:CDS |
| CTGTTGGCAGAGATGGCGTG+AGG | 0.672325 | 3_3:+65835447 | Msa0465420:CDS |
| ATTCACTATGGAATTCCAAG+AGG | 0.710595 | 3_3:+65834142 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTAAAAATAGAAGAATA+AGG | + | chr3_3:65836394-65836413 | Msa0465420:intron | 10.0% |
| !!! | AAGATAAAATGTTTTATGTT+TGG | - | chr3_3:65835211-65835230 | None:intergenic | 15.0% |
| !!! | ATGTTTCTATGTATATTAAT+GGG | + | chr3_3:65835387-65835406 | Msa0465420:intron | 15.0% |
| !!! | TATGATCTCTTTTAATTTTA+AGG | + | chr3_3:65836139-65836158 | Msa0465420:intron | 15.0% |
| !!! | AATTACATATTTACTTTTGT+TGG | + | chr3_3:65836328-65836347 | Msa0465420:intron | 15.0% |
| !!! | AATTAAACTAAATCTAGAAT+AGG | - | chr3_3:65837025-65837044 | None:intergenic | 15.0% |
| !!! | ATTCTAGATTTAGTTTAATT+TGG | + | chr3_3:65837025-65837044 | Msa0465420:intron | 15.0% |
| !!! | TCCAATGTTAATTTGAATTT+AGG | + | chr3_3:65834625-65834644 | Msa0465420:intron | 20.0% |
| !! | ACCTAAATTCAAATTAACAT+TGG | - | chr3_3:65834629-65834648 | None:intergenic | 20.0% |
| !! | AATTTATCTAATATAAGCAC+TGG | - | chr3_3:65835320-65835339 | None:intergenic | 20.0% |
| !!! | CATGTTTCTATGTATATTAA+TGG | + | chr3_3:65835386-65835405 | Msa0465420:intron | 20.0% |
| !! | AAATTCATGAAACAACATTA+AGG | - | chr3_3:65835725-65835744 | None:intergenic | 20.0% |
| !!! | TTTTTTATTGTTTTTTGCAG+CGG | + | chr3_3:65835760-65835779 | Msa0465420:intron | 20.0% |
| !!! | TAATTTTAAGGTTGTATTTG+AGG | + | chr3_3:65836151-65836170 | Msa0465420:intron | 20.0% |
| !! | TATGAATACTATTACTATGT+TGG | + | chr3_3:65836233-65836252 | Msa0465420:intron | 20.0% |
| !! | ATTAAGAATTCTAATGTACA+AGG | - | chr3_3:65836296-65836315 | None:intergenic | 20.0% |
| !! | CTTACTTTGACTATATAAAA+AGG | - | chr3_3:65836701-65836720 | None:intergenic | 20.0% |
| !!! | ATTCTGATTCCTTTTTAGTT+AGG | + | chr3_3:65834273-65834292 | Msa0465420:CDS | 25.0% |
| !!! | TAGAATTGATTTTGCCATTT+TGG | + | chr3_3:65834824-65834843 | Msa0465420:intron | 25.0% |
| !!! | TTTTAGTTTCTGACTAAAAG+TGG | - | chr3_3:65834941-65834960 | None:intergenic | 25.0% |
| ! | TCAAGTATAATCAATTCTTG+AGG | - | chr3_3:65835114-65835133 | None:intergenic | 25.0% |
| ! | TTGAACAATAAGTGTATGTA+TGG | - | chr3_3:65835289-65835308 | None:intergenic | 25.0% |
| !!! | CTTGATATTGTTGTTTTGTT+TGG | + | chr3_3:65835955-65835974 | Msa0465420:intron | 25.0% |
| !! | TTTTTCTATCAATTCATGTC+GGG | - | chr3_3:65836034-65836053 | None:intergenic | 25.0% |
| !! | CTTTTTCTATCAATTCATGT+CGG | - | chr3_3:65836035-65836054 | None:intergenic | 25.0% |
| ! | ATAGAAGAATAAGGAACTAT+TGG | + | chr3_3:65836403-65836422 | Msa0465420:intron | 25.0% |
| !! | ATTCAAAACACTAGTCTATT+AGG | + | chr3_3:65836641-65836660 | Msa0465420:intron | 25.0% |
| ! | CTATATAAAAATGCTCAATG+TGG | - | chr3_3:65836691-65836710 | None:intergenic | 25.0% |
| ! | CTATATAAAAATGCTCAATG+TGG | - | chr3_3:65836691-65836710 | None:intergenic | 25.0% |
| !!! | GATTCCTTTTTAGTTAGGTT+AGG | + | chr3_3:65834278-65834297 | Msa0465420:CDS | 30.0% |
| TTCTCCTAACCTAACTAAAA+AGG | - | chr3_3:65834285-65834304 | None:intergenic | 30.0% | |
| !!! | TTTTTAGTTAGGTTAGGAGA+AGG | + | chr3_3:65834284-65834303 | Msa0465420:CDS | 30.0% |
| AGCTTCTGCATAAAAAAGAA+AGG | - | chr3_3:65834438-65834457 | None:intergenic | 30.0% | |
| ATTCGAATGTGAAATATGCT+TGG | + | chr3_3:65834480-65834499 | Msa0465420:CDS | 30.0% | |
| AATGTGAAATATGCTTGGTA+TGG | + | chr3_3:65834485-65834504 | Msa0465420:CDS | 30.0% | |
| ! | TAAAGAACTAACCTTTGAAG+AGG | - | chr3_3:65834602-65834621 | None:intergenic | 30.0% |
| ATTTCATAAGCTATTCCAAC+CGG | + | chr3_3:65834734-65834753 | Msa0465420:intron | 30.0% | |
| CAAAATGTCTAGTGTATGTT+TGG | + | chr3_3:65834792-65834811 | Msa0465420:intron | 30.0% | |
| ATACTCAATAGCAACCAAAA+TGG | - | chr3_3:65834841-65834860 | None:intergenic | 30.0% | |
| ! | AATTGATTCTACTTGAAGCT+AGG | + | chr3_3:65834861-65834880 | Msa0465420:intron | 30.0% |
| !! | ACTGATTTTCACATGTTTGA+TGG | + | chr3_3:65835066-65835085 | Msa0465420:intron | 30.0% |
| GTAGAATGAATACTCATGTT+TGG | + | chr3_3:65835609-65835628 | Msa0465420:CDS | 30.0% | |
| TTGAAGCTTAAAACATATGC+AGG | - | chr3_3:65835635-65835654 | None:intergenic | 30.0% | |
| !! | TGCATATGTTTTAAGCTTCA+AGG | + | chr3_3:65835634-65835653 | Msa0465420:CDS | 30.0% |
| TTCAAGGTTTCTTCTTTGAA+AGG | + | chr3_3:65835650-65835669 | Msa0465420:CDS | 30.0% | |
| ATAGAAATCAAAGTCGGAAA+AGG | - | chr3_3:65835827-65835846 | None:intergenic | 30.0% | |
| ! | GAAAGCATAGAAATCAAAGT+CGG | - | chr3_3:65835833-65835852 | None:intergenic | 30.0% |
| ! | TTTGATTTCTATGCTTTCCA+AGG | + | chr3_3:65835835-65835854 | Msa0465420:CDS | 30.0% |
| TTTGTAGAACTTGCAAATCA+GGG | - | chr3_3:65835882-65835901 | None:intergenic | 30.0% | |
| TCTTAAACCAATATGCAAGT+AGG | - | chr3_3:65835933-65835952 | None:intergenic | 30.0% | |
| CATTAAGTATTATAGAGCCA+AGG | + | chr3_3:65836092-65836111 | Msa0465420:CDS | 30.0% | |
| GGTAGTGATGCTTAAAAAAT+TGG | + | chr3_3:65836172-65836191 | Msa0465420:intron | 30.0% | |
| TGATCAGTATTCTTATGCAT+TGG | + | chr3_3:65836270-65836289 | Msa0465420:intron | 30.0% | |
| CACATACATCTTCTTATATC+TGG | - | chr3_3:65836445-65836464 | None:intergenic | 30.0% | |
| CAGATATAAGAAGATGTATG+TGG | + | chr3_3:65836443-65836462 | Msa0465420:intron | 30.0% | |
| ! | TTCATCCTATGTCTTTTTAG+GGG | - | chr3_3:65836572-65836591 | None:intergenic | 30.0% |
| ! | CTTCATCCTATGTCTTTTTA+GGG | - | chr3_3:65836573-65836592 | None:intergenic | 30.0% |
| ! | TCTTCATCCTATGTCTTTTT+AGG | - | chr3_3:65836574-65836593 | None:intergenic | 30.0% |
| CTATATAAAAAGGCTCAATG+TGG | - | chr3_3:65836740-65836759 | None:intergenic | 30.0% | |
| ! | AAGTAGAGTGATTTTTCCAA+CGG | - | chr3_3:65836854-65836873 | None:intergenic | 30.0% |
| ACTCTACTTAGTAAGTCAAA+AGG | + | chr3_3:65836865-65836884 | Msa0465420:intron | 30.0% | |
| CTCGAAGGAAAAAAAGAAAA+GGG | - | chr3_3:65836969-65836988 | None:intergenic | 30.0% | |
| !! | GTTAGAGGCATTCTATCAAA+CGG | + | chr3_3:65834527-65834546 | Msa0465420:CDS | 35.0% |
| TTTCATAAGCTATTCCAACC+GGG | + | chr3_3:65834735-65834754 | Msa0465420:intron | 35.0% | |
| AAATAAGGCGACATTCCATA+AGG | + | chr3_3:65834764-65834783 | Msa0465420:intron | 35.0% | |
| !! | AGACATTTTGAGAGACCTTA+TGG | - | chr3_3:65834782-65834801 | None:intergenic | 35.0% |
| ! | GGCAAAATCAATTCTAAGAG+TGG | - | chr3_3:65834820-65834839 | None:intergenic | 35.0% |
| GACTAAAAGTGGTATGTGTT+TGG | - | chr3_3:65834930-65834949 | None:intergenic | 35.0% | |
| ACACATGCTTAGTGTATGTT+TGG | + | chr3_3:65835000-65835019 | Msa0465420:intron | 35.0% | |
| ! | ATGTTTGGTTTCACTTCTAG+AGG | + | chr3_3:65835015-65835034 | Msa0465420:intron | 35.0% |
| ! | TGTTTGGTTTCACTTCTAGA+GGG | + | chr3_3:65835016-65835035 | Msa0465420:intron | 35.0% |
| ! | ACTTCTAGAGGGATCAAAAT+TGG | + | chr3_3:65835027-65835046 | Msa0465420:intron | 35.0% |
| AGTGTAAAAAGTTGTGCTGT+TGG | + | chr3_3:65835431-65835450 | Msa0465420:intron | 35.0% | |
| !! | ATACTGTGCAGGGTTATTTT+GGG | + | chr3_3:65835476-65835495 | Msa0465420:CDS | 35.0% |
| ATCAACCCCAGAATCATAAT+CGG | - | chr3_3:65835552-65835571 | None:intergenic | 35.0% | |
| !!! | TTCTGGGGTTGATAGTTTTT+CGG | + | chr3_3:65835559-65835578 | Msa0465420:CDS | 35.0% |
| CTCCAACTAAGTACATGATT+TGG | + | chr3_3:65835582-65835601 | Msa0465420:CDS | 35.0% | |
| CTCCAAATCATGTACTTAGT+TGG | - | chr3_3:65835587-65835606 | None:intergenic | 35.0% | |
| CTTTGTAGAACTTGCAAATC+AGG | - | chr3_3:65835883-65835902 | None:intergenic | 35.0% | |
| CAAGTTCTACAAAGCTAGAA+AGG | + | chr3_3:65835889-65835908 | Msa0465420:CDS | 35.0% | |
| AAAGCTAGAAAGGTAAGTGT+TGG | + | chr3_3:65835899-65835918 | Msa0465420:intron | 35.0% | |
| TTTGCTTCCTACTTGCATAT+TGG | + | chr3_3:65835923-65835942 | Msa0465420:intron | 35.0% | |
| ! | TCATTTGCTCTATTTCTTGC+AGG | + | chr3_3:65835996-65836015 | Msa0465420:intron | 35.0% |
| GAAAAAGTGAGACAAATTGC+AGG | + | chr3_3:65836048-65836067 | Msa0465420:CDS | 35.0% | |
| GAATGAAACTAGTTGTACCT+TGG | - | chr3_3:65836112-65836131 | None:intergenic | 35.0% | |
| AGAAACTAGATGCACTTCTA+GGG | - | chr3_3:65836513-65836532 | None:intergenic | 35.0% | |
| !! | GTTTTGAATTGAACTCGTTG+TGG | - | chr3_3:65836630-65836649 | None:intergenic | 35.0% |
| GCTCGAAGGAAAAAAAGAAA+AGG | - | chr3_3:65836970-65836989 | None:intergenic | 35.0% | |
| GAAGAAACCTCGTCTTTAGT+AGG | - | chr3_3:65834325-65834344 | None:intergenic | 40.0% | |
| CTAAAGACGAGGTTTCTTCA+TGG | + | chr3_3:65834326-65834345 | Msa0465420:CDS | 40.0% | |
| ! | CTTTGAAGAGGAGAATCATC+TGG | - | chr3_3:65834590-65834609 | None:intergenic | 40.0% |
| CAGATGATTCTCCTCTTCAA+AGG | + | chr3_3:65834588-65834607 | Msa0465420:CDS | 40.0% | |
| !! | CCTTATTTCTATAACCCGGT+TGG | - | chr3_3:65834752-65834771 | None:intergenic | 40.0% |
| CCAACCGGGTTATAGAAATA+AGG | + | chr3_3:65834749-65834768 | Msa0465420:intron | 40.0% | |
| !! | GTCGCCTTATTTCTATAACC+CGG | - | chr3_3:65834756-65834775 | None:intergenic | 40.0% |
| ! | GATACTGTGCAGGGTTATTT+TGG | + | chr3_3:65835475-65835494 | Msa0465420:CDS | 40.0% |
| GAATCATAATCGGCACAACT+TGG | - | chr3_3:65835542-65835561 | None:intergenic | 40.0% | |
| !! | AGTTGTGCCGATTATGATTC+TGG | + | chr3_3:65835542-65835561 | Msa0465420:CDS | 40.0% |
| !! | GTTGTGCCGATTATGATTCT+GGG | + | chr3_3:65835543-65835562 | Msa0465420:CDS | 40.0% |
| !! | TTGTGCCGATTATGATTCTG+GGG | + | chr3_3:65835544-65835563 | Msa0465420:CDS | 40.0% |
| ! | ATCAGGGCAATATCAAGTTG+TGG | - | chr3_3:65835866-65835885 | None:intergenic | 40.0% |
| TGCTATGCTGTTCATACTTG+AGG | + | chr3_3:65836473-65836492 | Msa0465420:intron | 40.0% | |
| GCTATGCTGTTCATACTTGA+GGG | + | chr3_3:65836474-65836493 | Msa0465420:intron | 40.0% | |
| TTCATACTTGAGGGTTGTTC+TGG | + | chr3_3:65836483-65836502 | Msa0465420:intron | 40.0% | |
| GAAACTAGATGCACTTCTAG+GGG | - | chr3_3:65836512-65836531 | None:intergenic | 40.0% | |
| GAGAAACTAGATGCACTTCT+AGG | - | chr3_3:65836514-65836533 | None:intergenic | 40.0% | |
| !! | TGTCTTTTTAGGGGACTTCT+AGG | - | chr3_3:65836563-65836582 | None:intergenic | 40.0% |
| GAAGTCCCCTAAAAAGACAT+AGG | + | chr3_3:65836564-65836583 | Msa0465420:intron | 40.0% | |
| AGCTAGTGTATCATATCCGT+TGG | + | chr3_3:65836835-65836854 | Msa0465420:intron | 40.0% | |
| AGTCAAAAGGACACAGCTAT+TGG | + | chr3_3:65836878-65836897 | Msa0465420:intron | 40.0% | |
| ! | CTACAAGTTTTCAGCAAGCA+AGG | + | chr3_3:65837075-65837094 | Msa0465420:CDS | 40.0% |
| CATCATGATCCCATTCCTCT+TGG | - | chr3_3:65834160-65834179 | None:intergenic | 45.0% | |
| TTCACGACCTACTAAAGACG+AGG | + | chr3_3:65834315-65834334 | Msa0465420:CDS | 45.0% | |
| ACGAGGTTTCTTCATGGCTT+GGG | + | chr3_3:65834332-65834351 | Msa0465420:CDS | 45.0% | |
| ! | GAAGCTGTTTCCAAACTTCG+CGG | + | chr3_3:65834452-65834471 | Msa0465420:CDS | 45.0% |
| TATGCTTGGTATGGAGCTAC+TGG | + | chr3_3:65834494-65834513 | Msa0465420:CDS | 45.0% | |
| ACTGGTGAGAATGACGTTAG+AGG | + | chr3_3:65834512-65834531 | Msa0465420:CDS | 45.0% | |
| AACGGTTTCAGTCATGTCCA+TGG | + | chr3_3:65834545-65834564 | Msa0465420:CDS | 45.0% | |
| ACGGTTTCAGTCATGTCCAT+GGG | + | chr3_3:65834546-65834565 | Msa0465420:CDS | 45.0% | |
| AGAGACAGATGCTATTCCCA+TGG | - | chr3_3:65834565-65834584 | None:intergenic | 45.0% | |
| ! | TGAGGCATTTGATACTGTGC+AGG | + | chr3_3:65835465-65835484 | Msa0465420:CDS | 45.0% |
| ! | GAGGCATTTGATACTGTGCA+GGG | + | chr3_3:65835466-65835485 | Msa0465420:CDS | 45.0% |
| TTTGCAGCGGTTGAGATTGA+AGG | + | chr3_3:65835773-65835792 | Msa0465420:intron | 45.0% | |
| ! | ATCAAGTTGTGGCGAAACCT+TGG | - | chr3_3:65835855-65835874 | None:intergenic | 45.0% |
| ACAATAGCAGACATGCTCGA+AGG | - | chr3_3:65836984-65837003 | None:intergenic | 45.0% | |
| CAGCAAGCAAGGTCAAAGAA+TGG | + | chr3_3:65837086-65837105 | Msa0465420:CDS | 45.0% | |
| TGGGATCATGATGCCAGCAT+CGG | + | chr3_3:65834167-65834186 | Msa0465420:CDS | 50.0% | |
| TCGTTGTCGTTGTTCTTCGC+CGG | - | chr3_3:65834246-65834265 | None:intergenic | 50.0% | |
| GACGAGGTTTCTTCATGGCT+TGG | + | chr3_3:65834331-65834350 | Msa0465420:CDS | 50.0% | |
| ! | AGTTGTGCTGTTGGCAGAGA+TGG | + | chr3_3:65835440-65835459 | Msa0465420:CDS | 50.0% |
| TGCGAGACCAACTTCACCTT+CGG | + | chr3_3:65835799-65835818 | Msa0465420:CDS | 50.0% | |
| !! | AAAGGCACCGAAGGTGAAGT+TGG | - | chr3_3:65835809-65835828 | None:intergenic | 50.0% |
| !! | AAAGTCGGAAAAGGCACCGA+AGG | - | chr3_3:65835818-65835837 | None:intergenic | 50.0% |
| ACCGTTTCCGACTGCGAAAG+CGG | + | chr3_3:65834203-65834222 | Msa0465420:CDS | 55.0% | |
| ACCGCTTTCGCAGTCGGAAA+CGG | - | chr3_3:65834207-65834226 | None:intergenic | 55.0% | |
| GGAAACACCGCTTTCGCAGT+CGG | - | chr3_3:65834213-65834232 | None:intergenic | 55.0% | |
| TTGTCGTTGTTCTTCGCCGG+TGG | - | chr3_3:65834243-65834262 | None:intergenic | 55.0% | |
| GTGTTCTGACGCCGTTTCAC+AGG | + | chr3_3:65834400-65834419 | Msa0465420:CDS | 55.0% | |
| ! | GCTGTTTCCAAACTTCGCGG+TGG | + | chr3_3:65834455-65834474 | Msa0465420:CDS | 55.0% |
| CGAATCTCCACCGCGAAGTT+TGG | - | chr3_3:65834465-65834484 | None:intergenic | 55.0% | |
| GGAGGAGTCTTCACCGATGC+TGG | - | chr3_3:65834183-65834202 | None:intergenic | 60.0% | |
| TTCGCAGTCGGAAACGGTGG+AGG | - | chr3_3:65834201-65834220 | None:intergenic | 60.0% | |
| GCTTTCGCAGTCGGAAACGG+TGG | - | chr3_3:65834204-65834223 | None:intergenic | 60.0% | |
| ! | TTGTTCTTCGCCGGTGGTGG+TGG | - | chr3_3:65834237-65834256 | None:intergenic | 60.0% |
| TCGTTGTTCTTCGCCGGTGG+TGG | - | chr3_3:65834240-65834259 | None:intergenic | 60.0% | |
| TCGAAGCCGCGCCTGTGAAA+CGG | - | chr3_3:65834414-65834433 | None:intergenic | 60.0% | |
| CTGTTGGCAGAGATGGCGTG+AGG | + | chr3_3:65835447-65835466 | Msa0465420:CDS | 60.0% | |
| GGTGTTTCCGCCACCACCAC+CGG | + | chr3_3:65834224-65834243 | Msa0465420:CDS | 65.0% | |
| !! | TTCTTCGCCGGTGGTGGTGG+CGG | - | chr3_3:65834234-65834253 | None:intergenic | 65.0% |
| CTGACGCCGTTTCACAGGCG+CGG | + | chr3_3:65834405-65834424 | Msa0465420:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 65834149 | 65837115 | 65834149 | ID=Msa0465420;Name=Msa0465420 |
| chr3_3 | mRNA | 65834149 | 65837115 | 65834149 | ID=Msa0465420-mRNA-1;Parent=Msa0465420;Name=Msa0465420-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.75|0.4|1|1|1|5|0|324 |
| chr3_3 | exon | 65834149 | 65834609 | 65834149 | ID=Msa0465420-mRNA-1:exon:14672;Parent=Msa0465420-mRNA-1 |
| chr3_3 | exon | 65835433 | 65835671 | 65835433 | ID=Msa0465420-mRNA-1:exon:14673;Parent=Msa0465420-mRNA-1 |
| chr3_3 | exon | 65835780 | 65835910 | 65835780 | ID=Msa0465420-mRNA-1:exon:14674;Parent=Msa0465420-mRNA-1 |
| chr3_3 | exon | 65836018 | 65836113 | 65836018 | ID=Msa0465420-mRNA-1:exon:14675;Parent=Msa0465420-mRNA-1 |
| chr3_3 | exon | 65837068 | 65837115 | 65837068 | ID=Msa0465420-mRNA-1:exon:14676;Parent=Msa0465420-mRNA-1 |
| chr3_3 | CDS | 65834149 | 65834609 | 65834149 | ID=Msa0465420-mRNA-1:cds;Parent=Msa0465420-mRNA-1 |
| chr3_3 | CDS | 65835433 | 65835671 | 65835433 | ID=Msa0465420-mRNA-1:cds;Parent=Msa0465420-mRNA-1 |
| chr3_3 | CDS | 65835780 | 65835910 | 65835780 | ID=Msa0465420-mRNA-1:cds;Parent=Msa0465420-mRNA-1 |
| chr3_3 | CDS | 65836018 | 65836113 | 65836018 | ID=Msa0465420-mRNA-1:cds;Parent=Msa0465420-mRNA-1 |
| chr3_3 | CDS | 65837068 | 65837115 | 65837068 | ID=Msa0465420-mRNA-1:cds;Parent=Msa0465420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
