AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0110240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0110240 MtrunA17_Chr1g0168161 95.916 759 31 0 1 759 1 759 0.0 1447
Msa0110240 MtrunA17_Chr1g0186431 71.822 763 207 7 1 760 1 758 0.0 1097
Msa0110240 MtrunA17_Chr7g0274831 54.743 738 319 8 25 757 31 758 0.0 820
Msa0110240 MtrunA17_Chr1g0190021 53.146 747 333 8 19 757 18 755 0.0 779
Msa0110240 MtrunA17_Chr4g0013831 37.787 741 439 14 28 758 5 733 3.35e-155 469
Msa0110240 MtrunA17_Chr7g0269631 39.236 576 323 10 28 589 5 567 1.06e-114 360
Msa0110240 MtrunA17_Chr4g0077091 64.865 74 24 2 689 760 1 74 2.49e-23 94.4
Msa0110240 MtrunA17_Chr8g0377481 31.579 133 81 3 633 757 837 967 1.53e-13 74.7
Msa0110240 MtrunA17_Chr3g0122391 30.000 150 93 4 619 760 882 1027 1.21e-12 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0110240 AT3G23150.1 54.130 787 310 15 1 757 1 766 0.0 786
Msa0110240 AT3G04580.2 51.743 746 345 10 23 758 22 762 0.0 737
Msa0110240 AT3G04580.1 51.743 746 345 10 23 758 22 762 0.0 737
Msa0110240 AT3G23150.2 56.106 606 226 11 1 583 1 589 0.0 623
Msa0110240 AT1G04310.1 48.403 626 286 11 10 613 12 622 2.81e-180 530
Msa0110240 AT1G04310.2 48.403 626 286 11 10 613 12 622 2.81e-180 530
Msa0110240 AT1G66340.1 37.820 743 434 15 28 758 4 730 3.66e-154 466
Msa0110240 AT2G40940.1 41.202 466 268 5 42 503 17 480 4.38e-110 348
Msa0110240 AT1G27320.1 22.838 451 300 13 342 757 428 865 4.44e-12 70.5

Find 185 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATGCATATTGGGTTTAA+TGG 0.188176 1_3:+22882600 Msa0110240:CDS
GTTAAACTGTCGGAAACTTT+AGG 0.198346 1_3:+22880479 Msa0110240:CDS
CCCCTTTGAAGTTATTCTTT+TGG 0.208877 1_3:+22882455 Msa0110240:CDS
ATGGCTTTATGCAAGGGTTT+TGG 0.236524 1_3:+22881271 Msa0110240:CDS
TTGTTTAATAGCTGGACTTA+TGG 0.240419 1_3:+22880185 Msa0110240:CDS
ATGAAATAAAGAAGCTCAAT+AGG 0.260762 1_3:-22880086 None:intergenic
GCAACTTATGAGAGAGAAAT+TGG 0.272205 1_3:+22880916 Msa0110240:CDS
TAACAATACATCCTAGTTTC+TGG 0.278898 1_3:-22882377 None:intergenic
TCTGAACTCTCCCCTGGTTC+GGG 0.291012 1_3:-22882264 None:intergenic
TTAAACTGTCGGAAACTTTA+GGG 0.291922 1_3:+22880480 Msa0110240:CDS
ATTGCTTTCATTGTACTTTG+TGG 0.294523 1_3:+22880152 Msa0110240:CDS
CTTAACTTGCCTGATTTAGA+TGG 0.294640 1_3:+22882480 Msa0110240:CDS
GATTCTTGTGTTTCAAGTTT+TGG 0.305051 1_3:+22881411 Msa0110240:CDS
GTTACTTCAGGGAGGCTTGC+AGG 0.306598 1_3:+22881562 Msa0110240:CDS
CTCTGAACTCTCCCCTGGTT+CGG 0.307952 1_3:-22882265 None:intergenic
GCCTATCGCTGTTGCTTTAA+CGG 0.315525 1_3:+22882548 Msa0110240:CDS
CCTTTGGAGATGAAATGTTT+TGG 0.321337 1_3:+22881205 Msa0110240:CDS
CTGTTACGCGATACTTGTTT+TGG 0.339387 1_3:+22880781 Msa0110240:CDS
GTGCAAACATTCCATTCAAA+TGG 0.340458 1_3:+22880114 Msa0110240:CDS
CAAAACAAGTATCGCGTAAC+AGG 0.352897 1_3:-22880780 None:intergenic
TTCGAATGCCTTACTCTTGT+TGG 0.353321 1_3:+22882417 Msa0110240:CDS
AGCTTGCATCGCCAAGTCTA+TGG 0.355095 1_3:+22881252 Msa0110240:CDS
ATTGTTACATCTGTTTCTTC+CGG 0.360494 1_3:+22882393 Msa0110240:CDS
AGGCCAATGCATTCAGTTAT+GGG 0.362686 1_3:+22881037 Msa0110240:CDS
TCAGAGACCTCAGTTACTTC+AGG 0.363567 1_3:+22881550 Msa0110240:CDS
ATGTATAAAGCAACAGCATC+TGG 0.373228 1_3:+22879906 Msa0110240:CDS
TCTTTGCCTAACTATGTTAT+CGG 0.373360 1_3:+22881316 Msa0110240:CDS
TATTAAAGTTGTTGCTGATC+AGG 0.379034 1_3:+22880853 Msa0110240:CDS
GATTTAAGGTTGAGGTTGAT+AGG 0.383654 1_3:+22881293 Msa0110240:CDS
CTTACTCTTGTTGGCCATGC+TGG 0.386576 1_3:+22882426 Msa0110240:CDS
GGTGTATCTGCAACTGCTAA+TGG 0.389182 1_3:+22879954 Msa0110240:CDS
GTCATCGTCACAGTTGCATT+TGG 0.391968 1_3:-22879982 None:intergenic
TGAGGAAAGCCTCTAGCATT+TGG 0.394008 1_3:-22882186 None:intergenic
TGGAGGTGGAAGATTTCCTT+TGG 0.397483 1_3:+22881189 Msa0110240:CDS
AACTCATGACCCTTGCTCTT+CGG 0.399844 1_3:+22882208 Msa0110240:CDS
GGAAGTTCAAAAGCCGTAAC+TGG 0.402042 1_3:+22882526 Msa0110240:CDS
CTTGCAACAGAATCGGCTTT+CGG 0.402801 1_3:-22882629 None:intergenic
CATCTAAATCAGGCAAGTTA+AGG 0.412834 1_3:-22882479 None:intergenic
AAGGCCAATGCATTCAGTTA+TGG 0.414233 1_3:+22881036 Msa0110240:CDS
CTTGAAAGTCCTCACTGCAT+TGG 0.415305 1_3:+22880244 Msa0110240:CDS
AAGCGAAAGGCGAGGGAGCT+TGG 0.417170 1_3:+22880344 Msa0110240:CDS
ATAGGACCTAATTTCCCTTC+AGG 0.424148 1_3:-22882677 None:intergenic
CAGAGGTCTGCAAGTCTTGT+TGG 0.425682 1_3:+22882311 Msa0110240:CDS
ATGCTATGGAAAATTCAGAT+AGG 0.427086 1_3:+22881161 Msa0110240:CDS
TCCAAAAGAATAACTTCAAA+GGG 0.428364 1_3:-22882456 None:intergenic
GATCAAAGTGATGAGGGTTA+TGG 0.428611 1_3:-22880282 None:intergenic
ACTTCAAATCCATCTAAATC+AGG 0.429557 1_3:-22882489 None:intergenic
TGACACATTTGTTTAATAGC+TGG 0.431512 1_3:+22880177 Msa0110240:CDS
AGGGAGCTTGGAATTGAGTA+TGG 0.435625 1_3:+22880356 Msa0110240:CDS
GAAGGATGTGTACGAGTGAC+CGG 0.443598 1_3:+22881584 Msa0110240:CDS
AAGCTCAGAAGAAGAATTGC+GGG 0.444376 1_3:+22882572 Msa0110240:CDS
CCCTATGCTTCTTAAAGTAA+AGG 0.446192 1_3:+22880304 Msa0110240:CDS
GGCATTCGGATCGCAGCAAC+CGG 0.448019 1_3:-22880707 None:intergenic
AAGAGTAAGGCATTCGAATC+CGG 0.451818 1_3:-22882412 None:intergenic
CCCTTGACTCTTACAACATC+CGG 0.458403 1_3:-22880608 None:intergenic
TTCTATACCGATCACTGATC+CGG 0.461024 1_3:+22880589 Msa0110240:CDS
TGAAATAAAGAAGCTCAATA+GGG 0.466212 1_3:-22880085 None:intergenic
CTGCTTGCTGCTGCGAGTAG+TGG 0.466733 1_3:+22880665 Msa0110240:CDS
TTGAAGTTACCGCAAGGATC+CGG 0.468641 1_3:+22882505 Msa0110240:CDS
AACCTCACTCATGAATTGAA+TGG 0.471461 1_3:+22880551 Msa0110240:CDS
GCGAAATCGAGCATTGCAAC+AGG 0.472193 1_3:+22880943 Msa0110240:CDS
CAACACTAAGCATTGGCATT+CGG 0.473530 1_3:-22880721 None:intergenic
TACGAGTGACCGGGCATTCG+AGG 0.475000 1_3:+22881594 Msa0110240:CDS
TCAGATAGGGACGGTGGAGG+TGG 0.475127 1_3:+22881175 Msa0110240:CDS
TTTCAGAAAGTCATGAGTAA+TGG 0.476424 1_3:+22881007 Msa0110240:CDS
CTAGTGAAGAGGCTAGATCT+TGG 0.479339 1_3:+22880810 Msa0110240:CDS
GAAAGTCATGAGTAATGGAA+TGG 0.480686 1_3:+22881012 Msa0110240:CDS
TGCAAACATTCCATTCAAAT+GGG 0.481437 1_3:+22880115 Msa0110240:CDS
CAGAAATTTCTCCAGAAACT+AGG 0.482342 1_3:+22882366 Msa0110240:CDS
CTTAGTGTTGGCGATTTCAA+AGG 0.483799 1_3:+22880734 Msa0110240:CDS
TGTAAGAGTCAAGGGAGATA+AGG 0.484906 1_3:+22880616 Msa0110240:CDS
GAGCATTGCAACAGGAGAAA+AGG 0.488985 1_3:+22880951 Msa0110240:CDS
ACCTCACTCATGAATTGAAT+GGG 0.492396 1_3:+22880552 Msa0110240:CDS
CAACAGCGATAGGCCAGTTA+CGG 0.493707 1_3:-22882539 None:intergenic
TTAGTGTTGGCGATTTCAAA+GGG 0.496178 1_3:+22880735 Msa0110240:CDS
CAGCATGGCCAACAAGAGTA+AGG 0.497047 1_3:-22882425 None:intergenic
GCGGTAACCATCCCCGAACC+AGG 0.502417 1_3:+22882252 Msa0110240:CDS
ATTCTAGAATGGCAGAAAGT+TGG 0.502478 1_3:+22880029 Msa0110240:CDS
GTCCAAAAGAATAACTTCAA+AGG 0.504471 1_3:-22882457 None:intergenic
ATAATGAAACAGAATGAAGC+TGG 0.506215 1_3:+22880383 Msa0110240:CDS
ACTTGATAGATGGTAACAAT+GGG 0.506406 1_3:+22881383 Msa0110240:CDS
TAACAGGCCTCCGTTACCTC+AGG 0.507753 1_3:-22880764 None:intergenic
TCAAAGTTTCCTCGAATGCC+CGG 0.509649 1_3:-22881603 None:intergenic
AGTGGAGTTTCTGTTGATGC+AGG 0.512394 1_3:+22880683 Msa0110240:CDS
AAACTTGATGAATGATGCTA+TGG 0.512786 1_3:+22881147 Msa0110240:CDS
CAAGTCTATGGCTTTATGCA+AGG 0.514591 1_3:+22881264 Msa0110240:CDS
CCTTTACTTTAAGAAGCATA+GGG 0.517469 1_3:-22880304 None:intergenic
GCGAATCCTTGCAACAGAAT+CGG 0.518862 1_3:-22882636 None:intergenic
CAGAGACCTCAGTTACTTCA+GGG 0.520849 1_3:+22881551 Msa0110240:CDS
TCGTCACCGATAACATAGTT+AGG 0.524597 1_3:-22881322 None:intergenic
TACTACCTTGGTTAAACTGT+CGG 0.524792 1_3:+22880469 Msa0110240:CDS
CAAGATCTAGCCTCTTCACT+AGG 0.525819 1_3:-22880809 None:intergenic
GGAGAAAAGGAACGCTATGA+TGG 0.526316 1_3:+22880964 Msa0110240:CDS
ACCTTTACTTTAAGAAGCAT+AGG 0.527347 1_3:-22880305 None:intergenic
AACTTGATAGATGGTAACAA+TGG 0.531282 1_3:+22881382 Msa0110240:CDS
AAAGTCATGAGTAATGGAAT+GGG 0.532334 1_3:+22881013 Msa0110240:CDS
CAGCATGATTTGAAACGTGT+GGG 0.533793 1_3:-22880210 None:intergenic
AGTTTCTGTTGATGCAGGAC+CGG 0.541642 1_3:+22880688 Msa0110240:CDS
AAGTCTATGGCTTTATGCAA+GGG 0.542582 1_3:+22881265 Msa0110240:CDS
GATGCCTAATGTTGATAAAA+CGG 0.545342 1_3:+22880523 Msa0110240:CDS
ACTCTCCCCTGGTTCGGGGA+TGG 0.547088 1_3:-22882259 None:intergenic
TTGAACATGGATATGCAACT+TGG 0.548877 1_3:+22881458 Msa0110240:CDS
GAAACTTATTGTGGATTCGA+TGG 0.549832 1_3:+22881102 Msa0110240:CDS
GATCAAAATTCCTTGTTCAG+AGG 0.550379 1_3:+22882294 Msa0110240:CDS
GATGACTCTGAACTCTCCCC+TGG 0.550748 1_3:-22882270 None:intergenic
TGTTGCTGATCAGGTAGCCG+TGG 0.554230 1_3:+22880862 Msa0110240:CDS
AAATCGCCAACACTAAGCAT+TGG 0.554872 1_3:-22880728 None:intergenic
TCCCATTCAATTCATGAGTG+AGG 0.557270 1_3:-22880553 None:intergenic
TGCTATGGAAAATTCAGATA+GGG 0.557827 1_3:+22881162 Msa0110240:CDS
TTGCGATTCTTCTAGAATTG+CGG 0.559822 1_3:-22880897 None:intergenic
CGATTGAGAAGATTCTAGAA+TGG 0.560839 1_3:+22880018 Msa0110240:CDS
AGAGTTCTTGCTGAAGCGAA+AGG 0.561096 1_3:+22880331 Msa0110240:CDS
ATGTTATCGGTGACGAGAAG+AGG 0.561390 1_3:+22881329 Msa0110240:CDS
CCGGATGTTGTAAGAGTCAA+GGG 0.561701 1_3:+22880608 Msa0110240:CDS
TTATTGTGGATTCGATGGTA+AGG 0.567940 1_3:+22881107 Msa0110240:CDS
TCTATTAACATTGTCGCTGT+CGG 0.568134 1_3:-22882334 None:intergenic
GCCGTTAAAGCAACAGCGAT+AGG 0.568669 1_3:-22882549 None:intergenic
CCAAAACATTTCATCTCCAA+AGG 0.569295 1_3:-22881205 None:intergenic
GAATGAACAGAAACTTATTG+TGG 0.569510 1_3:+22881093 Msa0110240:CDS
CAGATACACCCAATAAGAGC+AGG 0.570029 1_3:-22879941 None:intergenic
ATGGTTAGGAACTTGATAGA+TGG 0.571670 1_3:+22881373 Msa0110240:CDS
CGAATGCCAATGCTTAGTGT+TGG 0.574855 1_3:+22880722 Msa0110240:CDS
CATATGCAAGAAGATAATCC+AGG 0.578098 1_3:+22881633 Msa0110240:CDS
CTTGCATAAAGCCATAGACT+TGG 0.578350 1_3:-22881263 None:intergenic
TCCGGATGTTGTAAGAGTCA+AGG 0.578653 1_3:+22880607 Msa0110240:CDS
ATTCTGTTGCAAGGATTCGC+CGG 0.579730 1_3:+22882639 Msa0110240:CDS
TTTGGTACTTCCTAGTGAAG+AGG 0.580067 1_3:+22880799 Msa0110240:CDS
GAACGCTATGATGGCGAGTG+AGG 0.581349 1_3:+22880973 Msa0110240:CDS
TGTTATTGGCAGTCAATGAA+AGG 0.581485 1_3:+22882147 Msa0110240:intron
AATTCAGATAGGGACGGTGG+AGG 0.581615 1_3:+22881172 Msa0110240:CDS
CTTGCTGAAGCGAAAGGCGA+GGG 0.583282 1_3:+22880337 Msa0110240:CDS
CTTCAGGGAGGCTTGCAGGA+AGG 0.584384 1_3:+22881566 Msa0110240:CDS
ACATCACCGTTAGACGAGCT+TGG 0.587602 1_3:-22881484 None:intergenic
CGGAATCTGGAAGTCGAGGA+AGG 0.587888 1_3:+22881434 Msa0110240:CDS
CATAGGGATCAAAGTGATGA+GGG 0.588741 1_3:-22880288 None:intergenic
TCAGCATGATTTGAAACGTG+TGG 0.593806 1_3:-22880211 None:intergenic
CGAAAGCCGATTCTGTTGCA+AGG 0.594166 1_3:+22882630 Msa0110240:CDS
AATCCCATAACTGAATGCAT+TGG 0.595120 1_3:-22881040 None:intergenic
AAGGATGTGTACGAGTGACC+GGG 0.595446 1_3:+22881585 Msa0110240:CDS
GACTTGCAGACCTCTGAACA+AGG 0.597590 1_3:-22882304 None:intergenic
CAAGCTCAGAAGAAGAATTG+CGG 0.599403 1_3:+22882571 Msa0110240:CDS
TTTGAACTTCCGGATCCTTG+CGG 0.601307 1_3:-22882514 None:intergenic
TGTTATCGGTGACGAGAAGA+GGG 0.602377 1_3:+22881330 Msa0110240:CDS
CAAAGGGGCATGCACCAGCA+TGG 0.602581 1_3:-22882440 None:intergenic
CGGTAACCATCCCCGAACCA+GGG 0.604626 1_3:+22882253 Msa0110240:CDS
GTAGTTGAAACCGAAGAGCA+AGG 0.606603 1_3:-22882218 None:intergenic
AGAGCAAGGGTCATGAGTTG+AGG 0.607034 1_3:-22882204 None:intergenic
ACAACATCCGGATCAGTGAT+CGG 0.610257 1_3:-22880596 None:intergenic
AGTGTTGGCGATTTCAAAGG+GGG 0.610884 1_3:+22880737 Msa0110240:CDS
GTTGCTGATCAGGTAGCCGT+GGG 0.610984 1_3:+22880863 Msa0110240:CDS
TTGGCGGAATCTGGAAGTCG+AGG 0.612913 1_3:+22881430 Msa0110240:CDS
CTGAACTCTCCCCTGGTTCG+GGG 0.615088 1_3:-22882263 None:intergenic
GCATAGGGATCAAAGTGATG+AGG 0.615167 1_3:-22880289 None:intergenic
TCTTGCTGAAGCGAAAGGCG+AGG 0.616326 1_3:+22880336 Msa0110240:CDS
TAGTTGAAACCGAAGAGCAA+GGG 0.619553 1_3:-22882217 None:intergenic
GTGCATGTTAGATTTGACAT+AGG 0.621016 1_3:+22881505 Msa0110240:CDS
GGGGACGCCTGAGGTAACGG+AGG 0.625733 1_3:+22880757 Msa0110240:CDS
AGTCGAGGAAGGATTGAACA+TGG 0.630620 1_3:+22881445 Msa0110240:CDS
TGGAGACCAAGCTCGTCTAA+CGG 0.635163 1_3:+22881478 Msa0110240:CDS
TCACTCATGAATTGAATGGG+AGG 0.638853 1_3:+22880555 Msa0110240:CDS
ACTTATGAGAGAGAAATTGG+AGG 0.641195 1_3:+22880919 Msa0110240:CDS
GGTAACCATCCCCGAACCAG+GGG 0.647398 1_3:+22882254 Msa0110240:CDS
GATTCGATGGTAAGGACAAG+CGG 0.650665 1_3:+22881115 Msa0110240:CDS
GTGACGATGACACGAGCTGG+TGG 0.655983 1_3:+22879994 Msa0110240:CDS
ATGGATTTGAAGTTACCGCA+AGG 0.658657 1_3:+22882499 Msa0110240:CDS
TCATGAGTAATGGAATGGGA+AGG 0.660080 1_3:+22881017 Msa0110240:CDS
GATGGCGAGTGAGGCTAGAG+CGG 0.664178 1_3:+22880982 Msa0110240:CDS
ATGGAAAATTCAGATAGGGA+CGG 0.665488 1_3:+22881166 Msa0110240:CDS
GAAAATTCAGATAGGGACGG+TGG 0.665691 1_3:+22881169 Msa0110240:CDS
TGTTCAGTACCAAATGCTAG+AGG 0.667794 1_3:+22882177 Msa0110240:CDS
GGTTGCAGAACTGTGCTGTG+TGG 0.669623 1_3:+22880501 Msa0110240:CDS
AGTTTCCGACAGTTTAACCA+AGG 0.671343 1_3:-22880474 None:intergenic
TTGATAGATGGTAACAATGG+GGG 0.671786 1_3:+22881385 Msa0110240:CDS
AAGCCTCCCTGAAGTAACTG+AGG 0.673026 1_3:-22881557 None:intergenic
ACTGTGACGATGACACGAGC+TGG 0.677647 1_3:+22879991 Msa0110240:CDS
TCAACTACGCTGTTCTACCG+CGG 0.678877 1_3:+22882233 Msa0110240:CDS
GTGTTGGCGATTTCAAAGGG+GGG 0.681741 1_3:+22880738 Msa0110240:CDS
TAGTGTTGGCGATTTCAAAG+GGG 0.690768 1_3:+22880736 Msa0110240:CDS
TGCGGCATGAGAAAGACCCA+CGG 0.697860 1_3:-22880879 None:intergenic
AGCATGATTTGAAACGTGTG+GGG 0.698751 1_3:-22880209 None:intergenic
TGGTTCGGGGATGGTTACCG+CGG 0.700590 1_3:-22882250 None:intergenic
AGACCTCAGTTACTTCAGGG+AGG 0.704562 1_3:+22881554 Msa0110240:CDS
CTTGATAGATGGTAACAATG+GGG 0.715045 1_3:+22881384 Msa0110240:CDS
CCAAAAGAATAACTTCAAAG+GGG 0.718508 1_3:-22882455 None:intergenic
CACATGAAACCAATGCAGTG+AGG 0.730416 1_3:-22880253 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTGACATTATTCATTAA+AGG + chr1_3:22881717-22881736 Msa0110240:intron 15.0%
!! TTGAACAAATTTGAAAAATA+TGG - chr1_3:22882019-22882038 None:intergenic 15.0%
!! GTAATTAGAACTATTAAATT+AGG + chr1_3:22882079-22882098 Msa0110240:intron 15.0%
!! ATGTCAATAAAGATGAAAAT+CGG - chr1_3:22881707-22881726 None:intergenic 20.0%
!!! AAAATTGTGATAGAACATTT+TGG + chr1_3:22881765-22881784 Msa0110240:intron 20.0%
!! AATTATTCATTGGAATTTCA+TGG - chr1_3:22882045-22882064 None:intergenic 20.0%
!! ATGAAATTCCAATGAATAAT+TGG + chr1_3:22882044-22882063 Msa0110240:intron 20.0%
!! TTAATTTTCCTGCTCTTATT+GGG + chr1_3:22879933-22879952 Msa0110240:CDS 25.0%
! TGAAATAAAGAAGCTCAATA+GGG - chr1_3:22880088-22880107 None:intergenic 25.0%
! ATGAAATAAAGAAGCTCAAT+AGG - chr1_3:22880089-22880108 None:intergenic 25.0%
!! AGAACTTGAAAATTTTGAAC+TGG - chr1_3:22881794-22881813 None:intergenic 25.0%
! ATTCAATTCATAATGTCTCT+AGG + chr1_3:22881983-22882002 Msa0110240:intron 25.0%
! TTCAATTCATAATGTCTCTA+GGG + chr1_3:22881984-22882003 Msa0110240:intron 25.0%
! CCAATAACATACAAAATCAA+TGG - chr1_3:22882136-22882155 None:intergenic 25.0%
!!! CCATTGATTTTGTATGTTAT+TGG + chr1_3:22882133-22882152 Msa0110240:intron 25.0%
! TCCAAAAGAATAACTTCAAA+GGG - chr1_3:22882459-22882478 None:intergenic 25.0%
! CTTAATTTTCCTGCTCTTAT+TGG + chr1_3:22879932-22879951 Msa0110240:CDS 30.0%
TGCAAACATTCCATTCAAAT+GGG + chr1_3:22880115-22880134 Msa0110240:CDS 30.0%
!! TGAAAAAGTACCCATTTGAA+TGG - chr1_3:22880128-22880147 None:intergenic 30.0%
ATTGCTTTCATTGTACTTTG+TGG + chr1_3:22880152-22880171 Msa0110240:CDS 30.0%
TGACACATTTGTTTAATAGC+TGG + chr1_3:22880177-22880196 Msa0110240:CDS 30.0%
TTGTTTAATAGCTGGACTTA+TGG + chr1_3:22880185-22880204 Msa0110240:CDS 30.0%
! CCTTTACTTTAAGAAGCATA+GGG - chr1_3:22880307-22880326 None:intergenic 30.0%
! ACCTTTACTTTAAGAAGCAT+AGG - chr1_3:22880308-22880327 None:intergenic 30.0%
ATAATGAAACAGAATGAAGC+TGG + chr1_3:22880383-22880402 Msa0110240:CDS 30.0%
! TGAGATTTTGTATACTACCT+TGG + chr1_3:22880457-22880476 Msa0110240:CDS 30.0%
TTAAACTGTCGGAAACTTTA+GGG + chr1_3:22880480-22880499 Msa0110240:CDS 30.0%
! GATGCCTAATGTTGATAAAA+CGG + chr1_3:22880523-22880542 Msa0110240:CDS 30.0%
TATTAAAGTTGTTGCTGATC+AGG + chr1_3:22880853-22880872 Msa0110240:CDS 30.0%
TTTCAGAAAGTCATGAGTAA+TGG + chr1_3:22881007-22881026 Msa0110240:CDS 30.0%
! AAAGTCATGAGTAATGGAAT+GGG + chr1_3:22881013-22881032 Msa0110240:CDS 30.0%
GAATGAACAGAAACTTATTG+TGG + chr1_3:22881093-22881112 Msa0110240:CDS 30.0%
AAACTTGATGAATGATGCTA+TGG + chr1_3:22881147-22881166 Msa0110240:CDS 30.0%
ATGCTATGGAAAATTCAGAT+AGG + chr1_3:22881161-22881180 Msa0110240:CDS 30.0%
TGCTATGGAAAATTCAGATA+GGG + chr1_3:22881162-22881181 Msa0110240:CDS 30.0%
TCTTTGCCTAACTATGTTAT+CGG + chr1_3:22881316-22881335 Msa0110240:CDS 30.0%
AACTTGATAGATGGTAACAA+TGG + chr1_3:22881382-22881401 Msa0110240:CDS 30.0%
ACTTGATAGATGGTAACAAT+GGG + chr1_3:22881383-22881402 Msa0110240:CDS 30.0%
!!! GATTCTTGTGTTTCAAGTTT+TGG + chr1_3:22881411-22881430 Msa0110240:CDS 30.0%
CAAATGTTATATAGCTTACC+TGG - chr1_3:22881654-22881673 None:intergenic 30.0%
GCTTTCATTCATAGATTTGT+TGG + chr1_3:22881949-22881968 Msa0110240:intron 30.0%
TCAATTCATAATGTCTCTAG+GGG + chr1_3:22881985-22882004 Msa0110240:intron 30.0%
ATAGCACACCAATTATTCAT+TGG - chr1_3:22882055-22882074 None:intergenic 30.0%
TAACAATACATCCTAGTTTC+TGG - chr1_3:22882380-22882399 None:intergenic 30.0%
! ATTGTTACATCTGTTTCTTC+CGG + chr1_3:22882393-22882412 Msa0110240:CDS 30.0%
CCAAAAGAATAACTTCAAAG+GGG - chr1_3:22882458-22882477 None:intergenic 30.0%
GTCCAAAAGAATAACTTCAA+AGG - chr1_3:22882460-22882479 None:intergenic 30.0%
ACTTCAAATCCATCTAAATC+AGG - chr1_3:22882492-22882511 None:intergenic 30.0%
GGGAAAAATGTATGCATATT+GGG + chr1_3:22882592-22882611 Msa0110240:CDS 30.0%
TGTATGCATATTGGGTTTAA+TGG + chr1_3:22882600-22882619 Msa0110240:CDS 30.0%
!!! AATTTCCCTTCAGGATTTTT+TGG - chr1_3:22882671-22882690 None:intergenic 30.0%
ATGTATAAAGCAACAGCATC+TGG + chr1_3:22879906-22879925 Msa0110240:CDS 35.0%
! CGATTGAGAAGATTCTAGAA+TGG + chr1_3:22880018-22880037 Msa0110240:CDS 35.0%
!! ATTCTAGAATGGCAGAAAGT+TGG + chr1_3:22880029-22880048 Msa0110240:CDS 35.0%
GTGCAAACATTCCATTCAAA+TGG + chr1_3:22880114-22880133 Msa0110240:CDS 35.0%
CCCTATGCTTCTTAAAGTAA+AGG + chr1_3:22880304-22880323 Msa0110240:CDS 35.0%
TACTACCTTGGTTAAACTGT+CGG + chr1_3:22880469-22880488 Msa0110240:CDS 35.0%
GTTAAACTGTCGGAAACTTT+AGG + chr1_3:22880479-22880498 Msa0110240:CDS 35.0%
!! ATCGCCGTTTTATCAACATT+AGG - chr1_3:22880530-22880549 None:intergenic 35.0%
AACCTCACTCATGAATTGAA+TGG + chr1_3:22880551-22880570 Msa0110240:CDS 35.0%
ACCTCACTCATGAATTGAAT+GGG + chr1_3:22880552-22880571 Msa0110240:CDS 35.0%
!! TTAGTGTTGGCGATTTCAAA+GGG + chr1_3:22880735-22880754 Msa0110240:CDS 35.0%
!! TTGCGATTCTTCTAGAATTG+CGG - chr1_3:22880900-22880919 None:intergenic 35.0%
GCAACTTATGAGAGAGAAAT+TGG + chr1_3:22880916-22880935 Msa0110240:CDS 35.0%
ACTTATGAGAGAGAAATTGG+AGG + chr1_3:22880919-22880938 Msa0110240:CDS 35.0%
! GAAAGTCATGAGTAATGGAA+TGG + chr1_3:22881012-22881031 Msa0110240:CDS 35.0%
AATCCCATAACTGAATGCAT+TGG - chr1_3:22881043-22881062 None:intergenic 35.0%
GAAACTTATTGTGGATTCGA+TGG + chr1_3:22881102-22881121 Msa0110240:CDS 35.0%
TTATTGTGGATTCGATGGTA+AGG + chr1_3:22881107-22881126 Msa0110240:CDS 35.0%
ATGGAAAATTCAGATAGGGA+CGG + chr1_3:22881166-22881185 Msa0110240:CDS 35.0%
CCAAAACATTTCATCTCCAA+AGG - chr1_3:22881208-22881227 None:intergenic 35.0%
!! CCTTTGGAGATGAAATGTTT+TGG + chr1_3:22881205-22881224 Msa0110240:CDS 35.0%
!! AAGTCTATGGCTTTATGCAA+GGG + chr1_3:22881265-22881284 Msa0110240:CDS 35.0%
!!! ATGCAAGGGTTTTGGATTTA+AGG + chr1_3:22881279-22881298 Msa0110240:CDS 35.0%
! GATTTAAGGTTGAGGTTGAT+AGG + chr1_3:22881293-22881312 Msa0110240:CDS 35.0%
!!! TTTTCAGGTGATTTTGCACA+TGG + chr1_3:22881354-22881373 Msa0110240:CDS 35.0%
ATGGTTAGGAACTTGATAGA+TGG + chr1_3:22881373-22881392 Msa0110240:CDS 35.0%
CTTGATAGATGGTAACAATG+GGG + chr1_3:22881384-22881403 Msa0110240:CDS 35.0%
TTGATAGATGGTAACAATGG+GGG + chr1_3:22881385-22881404 Msa0110240:CDS 35.0%
!!! TCTTGTGTTTCAAGTTTTGG+CGG + chr1_3:22881414-22881433 Msa0110240:CDS 35.0%
TTGAACATGGATATGCAACT+TGG + chr1_3:22881458-22881477 Msa0110240:CDS 35.0%
GTGCATGTTAGATTTGACAT+AGG + chr1_3:22881505-22881524 Msa0110240:CDS 35.0%
CATATGCAAGAAGATAATCC+AGG + chr1_3:22881633-22881652 Msa0110240:CDS 35.0%
GCACGTATTGAATCAAGTAT+CGG - chr1_3:22881902-22881921 None:intergenic 35.0%
CAATTCATAATGTCTCTAGG+GGG + chr1_3:22881986-22882005 Msa0110240:intron 35.0%
TGTTATTGGCAGTCAATGAA+AGG + chr1_3:22882147-22882166 Msa0110240:intron 35.0%
GATCAAAATTCCTTGTTCAG+AGG + chr1_3:22882294-22882313 Msa0110240:CDS 35.0%
TCTATTAACATTGTCGCTGT+CGG - chr1_3:22882337-22882356 None:intergenic 35.0%
CAGAAATTTCTCCAGAAACT+AGG + chr1_3:22882366-22882385 Msa0110240:CDS 35.0%
!!! CCCCTTTGAAGTTATTCTTT+TGG + chr1_3:22882455-22882474 Msa0110240:CDS 35.0%
CATCTAAATCAGGCAAGTTA+AGG - chr1_3:22882482-22882501 None:intergenic 35.0%
!! CTTAACTTGCCTGATTTAGA+TGG + chr1_3:22882480-22882499 Msa0110240:CDS 35.0%
CGGGAAAAATGTATGCATAT+TGG + chr1_3:22882591-22882610 Msa0110240:CDS 35.0%
AGAACTCCAAAAAATCCTGA+AGG + chr1_3:22882662-22882681 Msa0110240:CDS 35.0%
GAACTCCAAAAAATCCTGAA+GGG + chr1_3:22882663-22882682 Msa0110240:CDS 35.0%
! AGTTGGCGATTTTCTGATTG+CGG + chr1_3:22880046-22880065 Msa0110240:CDS 40.0%
! AGCATGATTTGAAACGTGTG+GGG - chr1_3:22880212-22880231 None:intergenic 40.0%
! CAGCATGATTTGAAACGTGT+GGG - chr1_3:22880213-22880232 None:intergenic 40.0%
! TCAGCATGATTTGAAACGTG+TGG - chr1_3:22880214-22880233 None:intergenic 40.0%
GATCAAAGTGATGAGGGTTA+TGG - chr1_3:22880285-22880304 None:intergenic 40.0%
CATAGGGATCAAAGTGATGA+GGG - chr1_3:22880291-22880310 None:intergenic 40.0%
AGTTTCCGACAGTTTAACCA+AGG - chr1_3:22880477-22880496 None:intergenic 40.0%
TCCCATTCAATTCATGAGTG+AGG - chr1_3:22880556-22880575 None:intergenic 40.0%
TCACTCATGAATTGAATGGG+AGG + chr1_3:22880555-22880574 Msa0110240:CDS 40.0%
TTCTATACCGATCACTGATC+CGG + chr1_3:22880589-22880608 Msa0110240:CDS 40.0%
TGTAAGAGTCAAGGGAGATA+AGG + chr1_3:22880616-22880635 Msa0110240:CDS 40.0%
!! CAACACTAAGCATTGGCATT+CGG - chr1_3:22880724-22880743 None:intergenic 40.0%
AAATCGCCAACACTAAGCAT+TGG - chr1_3:22880731-22880750 None:intergenic 40.0%
!! CTTAGTGTTGGCGATTTCAA+AGG + chr1_3:22880734-22880753 Msa0110240:CDS 40.0%
!! TAGTGTTGGCGATTTCAAAG+GGG + chr1_3:22880736-22880755 Msa0110240:CDS 40.0%
! CAAAACAAGTATCGCGTAAC+AGG - chr1_3:22880783-22880802 None:intergenic 40.0%
! CTGTTACGCGATACTTGTTT+TGG + chr1_3:22880781-22880800 Msa0110240:CDS 40.0%
TTTGGTACTTCCTAGTGAAG+AGG + chr1_3:22880799-22880818 Msa0110240:CDS 40.0%
! TCATGAGTAATGGAATGGGA+AGG + chr1_3:22881017-22881036 Msa0110240:CDS 40.0%
AAGGCCAATGCATTCAGTTA+TGG + chr1_3:22881036-22881055 Msa0110240:CDS 40.0%
AGGCCAATGCATTCAGTTAT+GGG + chr1_3:22881037-22881056 Msa0110240:CDS 40.0%
CTTGCATAAAGCCATAGACT+TGG - chr1_3:22881266-22881285 None:intergenic 40.0%
!! CAAGTCTATGGCTTTATGCA+AGG + chr1_3:22881264-22881283 Msa0110240:CDS 40.0%
!!! ATGGCTTTATGCAAGGGTTT+TGG + chr1_3:22881271-22881290 Msa0110240:CDS 40.0%
!!! GGGTTTTGGATTTAAGGTTG+AGG + chr1_3:22881285-22881304 Msa0110240:CDS 40.0%
TCGTCACCGATAACATAGTT+AGG - chr1_3:22881325-22881344 None:intergenic 40.0%
! AGGTGATTTTGCACATGGTT+AGG + chr1_3:22881359-22881378 Msa0110240:CDS 40.0%
!!! TTTCAAGTTTTGGCGGAATC+TGG + chr1_3:22881421-22881440 Msa0110240:CDS 40.0%
!! CGTATTGAATCAAGTATCGG+CGG - chr1_3:22881899-22881918 None:intergenic 40.0%
TGTTCAGTACCAAATGCTAG+AGG + chr1_3:22882177-22882196 Msa0110240:CDS 40.0%
TAGTTGAAACCGAAGAGCAA+GGG - chr1_3:22882220-22882239 None:intergenic 40.0%
! AAGAGTAAGGCATTCGAATC+CGG - chr1_3:22882415-22882434 None:intergenic 40.0%
TTCGAATGCCTTACTCTTGT+TGG + chr1_3:22882417-22882436 Msa0110240:CDS 40.0%
! ATGGATTTGAAGTTACCGCA+AGG + chr1_3:22882499-22882518 Msa0110240:CDS 40.0%
! AGTTACGGCTTTTGAACTTC+CGG - chr1_3:22882527-22882546 None:intergenic 40.0%
CAAGCTCAGAAGAAGAATTG+CGG + chr1_3:22882571-22882590 Msa0110240:CDS 40.0%
AAGCTCAGAAGAAGAATTGC+GGG + chr1_3:22882572-22882591 Msa0110240:CDS 40.0%
!!! CAGGATTTTTTGGAGTTCTC+CGG - chr1_3:22882661-22882680 None:intergenic 40.0%
CAGATACACCCAATAAGAGC+AGG - chr1_3:22879944-22879963 None:intergenic 45.0%
GGTGTATCTGCAACTGCTAA+TGG + chr1_3:22879954-22879973 Msa0110240:CDS 45.0%
GTCATCGTCACAGTTGCATT+TGG - chr1_3:22879985-22880004 None:intergenic 45.0%
CTTGAAAGTCCTCACTGCAT+TGG + chr1_3:22880244-22880263 Msa0110240:CDS 45.0%
CACATGAAACCAATGCAGTG+AGG - chr1_3:22880256-22880275 None:intergenic 45.0%
GCATAGGGATCAAAGTGATG+AGG - chr1_3:22880292-22880311 None:intergenic 45.0%
AGAGTTCTTGCTGAAGCGAA+AGG + chr1_3:22880331-22880350 Msa0110240:CDS 45.0%
AGGGAGCTTGGAATTGAGTA+TGG + chr1_3:22880356-22880375 Msa0110240:CDS 45.0%
ACAACATCCGGATCAGTGAT+CGG - chr1_3:22880599-22880618 None:intergenic 45.0%
TCCGGATGTTGTAAGAGTCA+AGG + chr1_3:22880607-22880626 Msa0110240:CDS 45.0%
CCCTTGACTCTTACAACATC+CGG - chr1_3:22880611-22880630 None:intergenic 45.0%
CCGGATGTTGTAAGAGTCAA+GGG + chr1_3:22880608-22880627 Msa0110240:CDS 45.0%
AGTGGAGTTTCTGTTGATGC+AGG + chr1_3:22880683-22880702 Msa0110240:CDS 45.0%
AGTTTCTGTTGATGCAGGAC+CGG + chr1_3:22880688-22880707 Msa0110240:CDS 45.0%
CGAATGCCAATGCTTAGTGT+TGG + chr1_3:22880722-22880741 Msa0110240:CDS 45.0%
!! AGTGTTGGCGATTTCAAAGG+GGG + chr1_3:22880737-22880756 Msa0110240:CDS 45.0%
CAAGATCTAGCCTCTTCACT+AGG - chr1_3:22880812-22880831 None:intergenic 45.0%
CTAGTGAAGAGGCTAGATCT+TGG + chr1_3:22880810-22880829 Msa0110240:CDS 45.0%
! GAGCATTGCAACAGGAGAAA+AGG + chr1_3:22880951-22880970 Msa0110240:CDS 45.0%
GGAGAAAAGGAACGCTATGA+TGG + chr1_3:22880964-22880983 Msa0110240:CDS 45.0%
GATTCGATGGTAAGGACAAG+CGG + chr1_3:22881115-22881134 Msa0110240:CDS 45.0%
GAAAATTCAGATAGGGACGG+TGG + chr1_3:22881169-22881188 Msa0110240:CDS 45.0%
TGGAGGTGGAAGATTTCCTT+TGG + chr1_3:22881189-22881208 Msa0110240:CDS 45.0%
ATGTTATCGGTGACGAGAAG+AGG + chr1_3:22881329-22881348 Msa0110240:CDS 45.0%
TGTTATCGGTGACGAGAAGA+GGG + chr1_3:22881330-22881349 Msa0110240:CDS 45.0%
! TGACGAGAAGAGGGTTTTTC+AGG + chr1_3:22881339-22881358 Msa0110240:CDS 45.0%
ATAGATGGTAACAATGGGGG+AGG + chr1_3:22881388-22881407 Msa0110240:CDS 45.0%
TAGATGGTAACAATGGGGGA+GGG + chr1_3:22881389-22881408 Msa0110240:CDS 45.0%
AGTCGAGGAAGGATTGAACA+TGG + chr1_3:22881445-22881464 Msa0110240:CDS 45.0%
TCAGAGACCTCAGTTACTTC+AGG + chr1_3:22881550-22881569 Msa0110240:CDS 45.0%
CAGAGACCTCAGTTACTTCA+GGG + chr1_3:22881551-22881570 Msa0110240:CDS 45.0%
TCAAAGTTTCCTCGAATGCC+CGG - chr1_3:22881606-22881625 None:intergenic 45.0%
TGAGGAAAGCCTCTAGCATT+TGG - chr1_3:22882189-22882208 None:intergenic 45.0%
AACTCATGACCCTTGCTCTT+CGG + chr1_3:22882208-22882227 Msa0110240:CDS 45.0%
GTAGTTGAAACCGAAGAGCA+AGG - chr1_3:22882221-22882240 None:intergenic 45.0%
TTGAAGTTACCGCAAGGATC+CGG + chr1_3:22882505-22882524 Msa0110240:CDS 45.0%
TTTGAACTTCCGGATCCTTG+CGG - chr1_3:22882517-22882536 None:intergenic 45.0%
GGAAGTTCAAAAGCCGTAAC+TGG + chr1_3:22882526-22882545 Msa0110240:CDS 45.0%
!! GCCTATCGCTGTTGCTTTAA+CGG + chr1_3:22882548-22882567 Msa0110240:CDS 45.0%
! CTTGCAACAGAATCGGCTTT+CGG - chr1_3:22882632-22882651 None:intergenic 45.0%
GCGAATCCTTGCAACAGAAT+CGG - chr1_3:22882639-22882658 None:intergenic 45.0%
ATTCTGTTGCAAGGATTCGC+CGG + chr1_3:22882639-22882658 Msa0110240:CDS 45.0%
! TGGCGATTTTCTGATTGCGG+TGG + chr1_3:22880049-22880068 Msa0110240:CDS 50.0%
! GTGTTGGCGATTTCAAAGGG+GGG + chr1_3:22880738-22880757 Msa0110240:CDS 50.0%
! GCGAAATCGAGCATTGCAAC+AGG + chr1_3:22880943-22880962 Msa0110240:CDS 50.0%
AATTCAGATAGGGACGGTGG+AGG + chr1_3:22881172-22881191 Msa0110240:CDS 50.0%
AGCTTGCATCGCCAAGTCTA+TGG + chr1_3:22881252-22881271 Msa0110240:CDS 50.0%
TGGAGACCAAGCTCGTCTAA+CGG + chr1_3:22881478-22881497 Msa0110240:CDS 50.0%
ACATCACCGTTAGACGAGCT+TGG - chr1_3:22881487-22881506 None:intergenic 50.0%
AGACCTCAGTTACTTCAGGG+AGG + chr1_3:22881554-22881573 Msa0110240:CDS 50.0%
AAGCCTCCCTGAAGTAACTG+AGG - chr1_3:22881560-22881579 None:intergenic 50.0%
GAAGGATGTGTACGAGTGAC+CGG + chr1_3:22881584-22881603 Msa0110240:CDS 50.0%
AAGGATGTGTACGAGTGACC+GGG + chr1_3:22881585-22881604 Msa0110240:CDS 50.0%
!! CAAGTATCGGCGGCTAATGA+AGG - chr1_3:22881889-22881908 None:intergenic 50.0%
AGAGCAAGGGTCATGAGTTG+AGG - chr1_3:22882207-22882226 None:intergenic 50.0%
TCAACTACGCTGTTCTACCG+CGG + chr1_3:22882233-22882252 Msa0110240:CDS 50.0%
GACTTGCAGACCTCTGAACA+AGG - chr1_3:22882307-22882326 None:intergenic 50.0%
! CAGAGGTCTGCAAGTCTTGT+TGG + chr1_3:22882311-22882330 Msa0110240:CDS 50.0%
CAGCATGGCCAACAAGAGTA+AGG - chr1_3:22882428-22882447 None:intergenic 50.0%
CTTACTCTTGTTGGCCATGC+TGG + chr1_3:22882426-22882445 Msa0110240:CDS 50.0%
CAACAGCGATAGGCCAGTTA+CGG - chr1_3:22882542-22882561 None:intergenic 50.0%
GCCGTTAAAGCAACAGCGAT+AGG - chr1_3:22882552-22882571 None:intergenic 50.0%
! CGAAAGCCGATTCTGTTGCA+AGG + chr1_3:22882630-22882649 Msa0110240:CDS 50.0%
ACTGTGACGATGACACGAGC+TGG + chr1_3:22879991-22880010 Msa0110240:CDS 55.0%
TCTTGCTGAAGCGAAAGGCG+AGG + chr1_3:22880336-22880355 Msa0110240:CDS 55.0%
CTTGCTGAAGCGAAAGGCGA+GGG + chr1_3:22880337-22880356 Msa0110240:CDS 55.0%
GGTTGCAGAACTGTGCTGTG+TGG + chr1_3:22880501-22880520 Msa0110240:CDS 55.0%
TAACAGGCCTCCGTTACCTC+AGG - chr1_3:22880767-22880786 None:intergenic 55.0%
TGTTGCTGATCAGGTAGCCG+TGG + chr1_3:22880862-22880881 Msa0110240:CDS 55.0%
GTTGCTGATCAGGTAGCCGT+GGG + chr1_3:22880863-22880882 Msa0110240:CDS 55.0%
TGCGGCATGAGAAAGACCCA+CGG - chr1_3:22880882-22880901 None:intergenic 55.0%
! GAACGCTATGATGGCGAGTG+AGG + chr1_3:22880973-22880992 Msa0110240:CDS 55.0%
TTGGCGGAATCTGGAAGTCG+AGG + chr1_3:22881430-22881449 Msa0110240:CDS 55.0%
CGGAATCTGGAAGTCGAGGA+AGG + chr1_3:22881434-22881453 Msa0110240:CDS 55.0%
GTTACTTCAGGGAGGCTTGC+AGG + chr1_3:22881562-22881581 Msa0110240:CDS 55.0%
TCTGAACTCTCCCCTGGTTC+GGG - chr1_3:22882267-22882286 None:intergenic 55.0%
CTCTGAACTCTCCCCTGGTT+CGG - chr1_3:22882268-22882287 None:intergenic 55.0%
GATGACTCTGAACTCTCCCC+TGG - chr1_3:22882273-22882292 None:intergenic 55.0%
GTGACGATGACACGAGCTGG+TGG + chr1_3:22879994-22880013 Msa0110240:CDS 60.0%
AAGCGAAAGGCGAGGGAGCT+TGG + chr1_3:22880344-22880363 Msa0110240:CDS 60.0%
! CTGCTTGCTGCTGCGAGTAG+TGG + chr1_3:22880665-22880684 Msa0110240:CDS 60.0%
GGCATTCGGATCGCAGCAAC+CGG - chr1_3:22880710-22880729 None:intergenic 60.0%
TTTCAAAGGGGGGACGCCTG+AGG + chr1_3:22880748-22880767 Msa0110240:CDS 60.0%
GATGGCGAGTGAGGCTAGAG+CGG + chr1_3:22880982-22881001 Msa0110240:CDS 60.0%
TCAGATAGGGACGGTGGAGG+TGG + chr1_3:22881175-22881194 Msa0110240:CDS 60.0%
CTTCAGGGAGGCTTGCAGGA+AGG + chr1_3:22881566-22881585 Msa0110240:CDS 60.0%
TACGAGTGACCGGGCATTCG+AGG + chr1_3:22881594-22881613 Msa0110240:CDS 60.0%
! TGGTTCGGGGATGGTTACCG+CGG - chr1_3:22882253-22882272 None:intergenic 60.0%
CGGTAACCATCCCCGAACCA+GGG + chr1_3:22882253-22882272 Msa0110240:CDS 60.0%
GGTAACCATCCCCGAACCAG+GGG + chr1_3:22882254-22882273 Msa0110240:CDS 60.0%
! CTGAACTCTCCCCTGGTTCG+GGG - chr1_3:22882266-22882285 None:intergenic 60.0%
! CAAAGGGGCATGCACCAGCA+TGG - chr1_3:22882443-22882462 None:intergenic 60.0%
AGGGGGGACGCCTGAGGTAA+CGG + chr1_3:22880754-22880773 Msa0110240:CDS 65.0%
GCGGTAACCATCCCCGAACC+AGG + chr1_3:22882252-22882271 Msa0110240:CDS 65.0%
!! ACTCTCCCCTGGTTCGGGGA+TGG - chr1_3:22882262-22882281 None:intergenic 65.0%
! GGGGACGCCTGAGGTAACGG+AGG + chr1_3:22880757-22880776 Msa0110240:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 22879906 22882692 22879906 ID=Msa0110240;Name=Msa0110240
chr1_3 mRNA 22879906 22882692 22879906 ID=Msa0110240-mRNA-1;Parent=Msa0110240;Name=Msa0110240-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|760
chr1_3 exon 22879906 22881654 22879906 ID=Msa0110240-mRNA-1:exon:8064;Parent=Msa0110240-mRNA-1
chr1_3 exon 22882159 22882692 22882159 ID=Msa0110240-mRNA-1:exon:8065;Parent=Msa0110240-mRNA-1
chr1_3 CDS 22879906 22881654 22879906 ID=Msa0110240-mRNA-1:cds;Parent=Msa0110240-mRNA-1
chr1_3 CDS 22882159 22882692 22882159 ID=Msa0110240-mRNA-1:cds;Parent=Msa0110240-mRNA-1
Gene Sequence

>Msa0110240

ATGTATAAAGCAACAGCATCTGGATTCTTAATTTTCCTGCTCTTATTGGGTGTATCTGCAACTGCTAATGGATTTTCCAAATGCAACTGTGACGATGACACGAGCTGGTGGACGATTGAGAAGATTCTAGAATGGCAGAAAGTTGGCGATTTTCTGATTGCGGTGGCGTACTTCTCGATCCCTATTGAGCTTCTTTATTTCATCAGTTGTGCAAACATTCCATTCAAATGGGTACTTTTTCAGTTCATTGCTTTCATTGTACTTTGTGGAATGACACATTTGTTTAATAGCTGGACTTATGGACCCCACACGTTTCAAATCATGCTGACTCTGACTGTCTTGAAAGTCCTCACTGCATTGGTTTCATGTGCAACTACCATAACCCTCATCACTTTGATCCCTATGCTTCTTAAAGTAAAGGTTCGAGAGTTCTTGCTGAAGCGAAAGGCGAGGGAGCTTGGAATTGAGTATGGTATGATAATGAAACAGAATGAAGCTGGAATGCATGTAAGAATGCTTACTCAAGAGATTCGCAAGTCGCTCGATAGACATGAGATTTTGTATACTACCTTGGTTAAACTGTCGGAAACTTTAGGGTTGCAGAACTGTGCTGTGTGGATGCCTAATGTTGATAAAACGGCGATGAACCTCACTCATGAATTGAATGGGAGGAATGTTAATTCTTCTATACCGATCACTGATCCGGATGTTGTAAGAGTCAAGGGAGATAAGGTAGTGCATATGATTGATTCTGACTCGCTGCTTGCTGCTGCGAGTAGTGGAGTTTCTGTTGATGCAGGACCGGTTGCTGCGATCCGAATGCCAATGCTTAGTGTTGGCGATTTCAAAGGGGGGACGCCTGAGGTAACGGAGGCCTGTTACGCGATACTTGTTTTGGTACTTCCTAGTGAAGAGGCTAGATCTTGGAGCAATCAAGAGCTTGAGATTATTAAAGTTGTTGCTGATCAGGTAGCCGTGGGTCTTTCTCATGCCGCAATTCTAGAAGAATCGCAACTTATGAGAGAGAAATTGGAGGAGCGAAATCGAGCATTGCAACAGGAGAAAAGGAACGCTATGATGGCGAGTGAGGCTAGAGCGGTTTTTCAGAAAGTCATGAGTAATGGAATGGGAAGGCCAATGCATTCAGTTATGGGATTGCTTTCAATGATGCAAGATGAGAATTTGAAGAATGAACAGAAACTTATTGTGGATTCGATGGTAAGGACAAGCGGTGTCGTATCAAACTTGATGAATGATGCTATGGAAAATTCAGATAGGGACGGTGGAGGTGGAAGATTTCCTTTGGAGATGAAATGTTTTGGTTTACATAACATGTTAAAACAAGCAGCTTGCATCGCCAAGTCTATGGCTTTATGCAAGGGTTTTGGATTTAAGGTTGAGGTTGATAGGTCTTTGCCTAACTATGTTATCGGTGACGAGAAGAGGGTTTTTCAGGTGATTTTGCACATGGTTAGGAACTTGATAGATGGTAACAATGGGGGAGGGATTCTTGTGTTTCAAGTTTTGGCGGAATCTGGAAGTCGAGGAAGGATTGAACATGGATATGCAACTTGGAGACCAAGCTCGTCTAACGGTGATGTGCATGTTAGATTTGACATAGGTATCAATAGCAGTAACTCTGAATCAGAGACCTCAGTTACTTCAGGGAGGCTTGCAGGAAGGATGTGTACGAGTGACCGGGCATTCGAGGAAACTTTGAGCTTCAGCATATGCAAGAAGATAATCCAGTCAATGAAAGGTAACATATGTTCAGTACCAAATGCTAGAGGCTTTCCTCAACTCATGACCCTTGCTCTTCGGTTTCAACTACGCTGTTCTACCGCGGTAACCATCCCCGAACCAGGGGAGAGTTCAGAGTCATCTGATCAAAATTCCTTGTTCAGAGGTCTGCAAGTCTTGTTGGCCGACAGCGACAATGTTAATAGAGCAGTAACACAGAAATTTCTCCAGAAACTAGGATGTATTGTTACATCTGTTTCTTCCGGATTCGAATGCCTTACTCTTGTTGGCCATGCTGGTGCATGCCCCTTTGAAGTTATTCTTTTGGACCTTAACTTGCCTGATTTAGATGGATTTGAAGTTACCGCAAGGATCCGGAAGTTCAAAAGCCGTAACTGGCCTATCGCTGTTGCTTTAACGGCAAGCTCAGAAGAAGAATTGCGGGAAAAATGTATGCATATTGGGTTTAATGGAGTTATCCGAAAGCCGATTCTGTTGCAAGGATTCGCCGGAGAACTCCAAAAAATCCTGAAGGGAAATTAG

Protein sequence

>Msa0110240

MYKATASGFLIFLLLLGVSATANGFSKCNCDDDTSWWTIEKILEWQKVGDFLIAVAYFSIPIELLYFISCANIPFKWVLFQFIAFIVLCGMTHLFNSWTYGPHTFQIMLTLTVLKVLTALVSCATTITLITLIPMLLKVKVREFLLKRKARELGIEYGMIMKQNEAGMHVRMLTQEIRKSLDRHEILYTTLVKLSETLGLQNCAVWMPNVDKTAMNLTHELNGRNVNSSIPITDPDVVRVKGDKVVHMIDSDSLLAAASSGVSVDAGPVAAIRMPMLSVGDFKGGTPEVTEACYAILVLVLPSEEARSWSNQELEIIKVVADQVAVGLSHAAILEESQLMREKLEERNRALQQEKRNAMMASEARAVFQKVMSNGMGRPMHSVMGLLSMMQDENLKNEQKLIVDSMVRTSGVVSNLMNDAMENSDRDGGGGRFPLEMKCFGLHNMLKQAACIAKSMALCKGFGFKVEVDRSLPNYVIGDEKRVFQVILHMVRNLIDGNNGGGILVFQVLAESGSRGRIEHGYATWRPSSSNGDVHVRFDIGINSSNSESETSVTSGRLAGRMCTSDRAFEETLSFSICKKIIQSMKGNICSVPNARGFPQLMTLALRFQLRCSTAVTIPEPGESSESSDQNSLFRGLQVLLADSDNVNRAVTQKFLQKLGCIVTSVSSGFECLTLVGHAGACPFEVILLDLNLPDLDGFEVTARIRKFKSRNWPIAVALTASSEEELREKCMHIGFNGVIRKPILLQGFAGELQKILKGN*