Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878410 | XP_013451540.2 | 97.270 | 293 | 8 | 0 | 1 | 293 | 1 | 293 | 0.0 | 596 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878410 | sp|Q8LGJ5|PCO2_ARATH | 52.743 | 237 | 101 | 6 | 58 | 290 | 47 | 276 | 4.98e-76 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878410 | A0A396HBT9 | 97.270 | 293 | 8 | 0 | 1 | 293 | 1 | 293 | 0.0 | 596 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021400 | Msa0878410 | 0.801483 | 8.815960e-49 | -8.615850e-47 |
| Msa0064960 | Msa0878410 | 0.809657 | 1.697750e-50 | -8.615850e-47 |
| Msa0110240 | Msa0878410 | 0.817322 | 3.501490e-52 | -8.615850e-47 |
| Msa0709820 | Msa0878410 | 0.810587 | 1.070463e-50 | -8.615850e-47 |
| Msa0735340 | Msa0878410 | 0.837466 | 5.113018e-57 | -8.615850e-47 |
| Msa0777210 | Msa0878410 | 0.829715 | 4.408930e-55 | -8.615850e-47 |
| Msa0814350 | Msa0878410 | 0.801271 | 9.740761e-49 | -8.615850e-47 |
| Msa0128740 | Msa0878410 | 0.801409 | 9.128709e-49 | -8.615850e-47 |
| Msa0173260 | Msa0878410 | 0.802514 | 5.412229e-49 | -8.615850e-47 |
| Msa0238140 | Msa0878410 | 0.800202 | 1.610089e-48 | -8.615850e-47 |
| Msa0238420 | Msa0878410 | 0.801187 | 1.013583e-48 | -8.615850e-47 |
| Msa0375500 | Msa0878410 | 0.843490 | 1.357186e-58 | -8.615850e-47 |
| Msa0384220 | Msa0878410 | 0.807787 | 4.261839e-50 | -8.615850e-47 |
| Msa0424300 | Msa0878410 | 0.814211 | 1.729650e-51 | -8.615850e-47 |
| Msa0434890 | Msa0878410 | 0.803586 | 3.248614e-49 | -8.615850e-47 |
| Msa0465420 | Msa0878410 | 0.835992 | 1.215112e-56 | -8.615850e-47 |
| Msa0471210 | Msa0878410 | 0.837597 | 4.733566e-57 | -8.615850e-47 |
| Msa0261490 | Msa0878410 | 0.810005 | 1.429373e-50 | -8.615850e-47 |
| Msa0511280 | Msa0878410 | 0.825818 | 3.808391e-54 | -8.615850e-47 |
| Msa0511380 | Msa0878410 | 0.816562 | 5.188195e-52 | -8.615850e-47 |
| Msa0515930 | Msa0878410 | 0.811862 | 5.663055e-51 | -8.615850e-47 |
| Msa0878410 | Msa0944160 | 0.889156 | 3.116502e-73 | -8.615850e-47 |
| Msa0878410 | Msa0980490 | 0.971963 | 5.351846e-134 | -8.615850e-47 |
| Msa0878410 | Msa0996940 | 0.805990 | 1.022174e-49 | -8.615850e-47 |
| Msa0878410 | Msa1171720 | 0.831929 | 1.263263e-55 | -8.615850e-47 |
| Msa0878410 | Msa1251500 | 0.804433 | 2.164915e-49 | -8.615850e-47 |
| Msa0878410 | Msa1321840 | 0.804616 | 1.983501e-49 | -8.615850e-47 |
| Msa0878410 | Msa1402000 | 0.819673 | 1.026544e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878410 | MtrunA17_Chr6g0460971 | 97.270 | 293 | 8 | 0 | 1 | 293 | 1 | 293 | 0.0 | 596 |
| Msa0878410 | MtrunA17_Chr7g0253891 | 78.169 | 284 | 59 | 3 | 12 | 293 | 1 | 283 | 2.19e-162 | 452 |
| Msa0878410 | MtrunA17_Chr6g0452941 | 49.793 | 241 | 112 | 5 | 58 | 291 | 41 | 279 | 6.42e-75 | 230 |
| Msa0878410 | MtrunA17_Chr7g0216881 | 51.770 | 226 | 99 | 4 | 58 | 278 | 45 | 265 | 5.16e-74 | 228 |
| Msa0878410 | MtrunA17_Chr2g0307681 | 44.177 | 249 | 120 | 6 | 55 | 288 | 25 | 269 | 7.51e-67 | 209 |
| Msa0878410 | MtrunA17_Chr2g0320221 | 40.833 | 240 | 125 | 7 | 58 | 288 | 5 | 236 | 3.68e-53 | 173 |
| Msa0878410 | MtrunA17_Chr4g0041281 | 39.256 | 242 | 129 | 7 | 57 | 288 | 4 | 237 | 9.70e-53 | 172 |
| Msa0878410 | MtrunA17_Chr2g0283961 | 38.843 | 242 | 132 | 6 | 58 | 288 | 4 | 240 | 1.88e-50 | 166 |
| Msa0878410 | MtrunA17_Chr5g0426531 | 35.743 | 249 | 130 | 6 | 53 | 289 | 1 | 231 | 5.68e-44 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878410 | AT5G39890.1 | 52.743 | 237 | 101 | 6 | 58 | 290 | 47 | 276 | 5.06e-77 | 236 |
| Msa0878410 | AT5G15120.1 | 46.457 | 254 | 122 | 7 | 44 | 288 | 43 | 291 | 3.18e-73 | 227 |
| Msa0878410 | AT5G39890.2 | 56.410 | 195 | 75 | 5 | 58 | 249 | 47 | 234 | 5.06e-68 | 212 |
| Msa0878410 | AT1G18490.1 | 40.449 | 267 | 142 | 6 | 37 | 288 | 16 | 280 | 8.84e-63 | 200 |
| Msa0878410 | AT3G58670.2 | 42.917 | 240 | 124 | 6 | 58 | 288 | 5 | 240 | 1.03e-56 | 183 |
| Msa0878410 | AT3G58670.3 | 42.917 | 240 | 124 | 6 | 58 | 288 | 5 | 240 | 1.03e-56 | 183 |
| Msa0878410 | AT3G58670.1 | 42.917 | 240 | 124 | 6 | 58 | 288 | 5 | 240 | 1.03e-56 | 183 |
| Msa0878410 | AT2G42670.1 | 40.336 | 238 | 130 | 5 | 59 | 288 | 6 | 239 | 1.73e-55 | 180 |
| Msa0878410 | AT2G42670.2 | 40.167 | 239 | 130 | 6 | 59 | 288 | 6 | 240 | 1.09e-53 | 175 |
| Msa0878410 | AT3G58670.4 | 48.571 | 175 | 86 | 3 | 115 | 288 | 26 | 197 | 3.35e-49 | 162 |
| Msa0878410 | AT2G42670.3 | 46.203 | 158 | 81 | 3 | 132 | 288 | 18 | 172 | 2.21e-40 | 139 |
Find 51 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGGATGGGATTGAATATT+TGG | 0.087793 | 6_1:-19315297 | Msa0878410:CDS |
| CTCATGCAAGGAAACATTTA+AGG | 0.167944 | 6_1:-19318313 | Msa0878410:CDS |
| TTCTCTTTGAAAATGCTTTC+AGG | 0.169239 | 6_1:+19317215 | None:intergenic |
| AAAATTATCACATTTGTATA+TGG | 0.267408 | 6_1:+19317172 | None:intergenic |
| TTACTTAGTCCAACATCTTC+TGG | 0.273780 | 6_1:+19317257 | None:intergenic |
| ACAATCTCTGCCATCATCTT+TGG | 0.288346 | 6_1:+19315958 | None:intergenic |
| TATAGGGCAGTCTCTATAAT+TGG | 0.298126 | 6_1:+19315269 | None:intergenic |
| TGGAGGTGTATCTATGAAAA+TGG | 0.310811 | 6_1:-19318487 | Msa0878410:CDS |
| CTGCCATCATCTTTGGAATA+AGG | 0.310958 | 6_1:+19315965 | None:intergenic |
| CACAAACTATGTCACATTCT+TGG | 0.323808 | 6_1:-19318258 | Msa0878410:intron |
| TGCACATTAAGTCATATGAT+TGG | 0.371146 | 6_1:-19316955 | Msa0878410:CDS |
| GTTGATAATCTGATCTTATA+GGG | 0.375737 | 6_1:+19315253 | None:intergenic |
| TGTGCTGTTCTTGATGTCAT+TGG | 0.379870 | 6_1:-19315992 | Msa0878410:CDS |
| TTAACCTTGCTACTATGATA+AGG | 0.405817 | 6_1:+19318375 | None:intergenic |
| AAAAGTTGGTTATGTGAAAA+GGG | 0.420424 | 6_1:-19318418 | Msa0878410:CDS |
| TGTGGTGAAGGGACAGTGTC+AGG | 0.421729 | 6_1:+19318288 | None:intergenic |
| TAACATATGAAGGAAGATAT+TGG | 0.443132 | 6_1:-19318507 | None:intergenic |
| ATGGATGGGATTGAATATTT+GGG | 0.444661 | 6_1:-19315296 | Msa0878410:CDS |
| GAGTTATGGCTGTGAATTCA+TGG | 0.446167 | 6_1:+19316017 | None:intergenic |
| TTACTGAAAACAGTCATTCC+TGG | 0.448277 | 6_1:+19316995 | None:intergenic |
| GCACATTAAGTCATATGATT+GGG | 0.450457 | 6_1:-19316954 | Msa0878410:CDS |
| TCATTCCTGGGTGGTTATGA+AGG | 0.451907 | 6_1:+19317008 | None:intergenic |
| AACAAATTGTGAGAAACATC+AGG | 0.461333 | 6_1:+19316926 | None:intergenic |
| AAAGAAGAAAATGAAAGTTA+TGG | 0.462932 | 6_1:-19315356 | Msa0878410:CDS |
| GATGCCAGAAAACTCTCAAA+TGG | 0.465281 | 6_1:-19315315 | Msa0878410:CDS |
| AAGAACAGCACATGGAGTTA+TGG | 0.471493 | 6_1:+19316003 | None:intergenic |
| CCAGAAAACTCTCAAATGGA+TGG | 0.498542 | 6_1:-19315311 | Msa0878410:CDS |
| GAAATTATTTGTCTCATGCA+AGG | 0.509216 | 6_1:-19318325 | Msa0878410:CDS |
| TGAAGTGCTTTATTAGACAT+TGG | 0.510691 | 6_1:+19318348 | None:intergenic |
| TCATGCAAGGAAACATTTAA+GGG | 0.532868 | 6_1:-19318312 | Msa0878410:CDS |
| CCTCCTTATTCCAAAGATGA+TGG | 0.537366 | 6_1:-19315968 | Msa0878410:CDS |
| ATGGTTGTATATGTGACCCT+TGG | 0.543482 | 6_1:+19317191 | None:intergenic |
| TACTGGGAAAAGCAGTGTAA+AGG | 0.545686 | 6_1:+19315918 | None:intergenic |
| TTTGAATACATACATTGAGA+TGG | 0.546750 | 6_1:+19316896 | None:intergenic |
| TACTGAAAACAGTCATTCCT+GGG | 0.547209 | 6_1:+19316996 | None:intergenic |
| CATTCCTGGGTGGTTATGAA+GGG | 0.552215 | 6_1:+19317009 | None:intergenic |
| AGGGCAGTCTCTATAATTGG+AGG | 0.559900 | 6_1:+19315272 | None:intergenic |
| CAGAAAACTCTCAAATGGAT+GGG | 0.570322 | 6_1:-19315310 | Msa0878410:CDS |
| AAGAAAATGAAAGTTATGGA+TGG | 0.575704 | 6_1:-19315352 | Msa0878410:CDS |
| AGGTGTATCTATGAAAATGG+AGG | 0.615461 | 6_1:-19318484 | Msa0878410:CDS |
| AACATGAAGCCAGAAGATGT+TGG | 0.636253 | 6_1:-19317266 | Msa0878410:CDS |
| CCATCATCTTTGGAATAAGG+AGG | 0.645071 | 6_1:+19315968 | None:intergenic |
| CATATGAAGGAAGATATTGG+AGG | 0.649850 | 6_1:-19318504 | Msa0878410:CDS |
| GAAACCTTATCATAGTAGCA+AGG | 0.650637 | 6_1:-19318379 | Msa0878410:CDS |
| ATTCCTGGGTGGTTATGAAG+GGG | 0.652761 | 6_1:+19317010 | None:intergenic |
| ATGACATCAAGAACAGCACA+TGG | 0.655518 | 6_1:+19315995 | None:intergenic |
| GGTGTATCTATGAAAATGGA+GGG | 0.655645 | 6_1:-19318483 | Msa0878410:CDS |
| GTATCTATGAAAATGGAGGG+TGG | 0.667112 | 6_1:-19318480 | Msa0878410:CDS |
| ATTCCCCTTCATAACCACCC+AGG | 0.695707 | 6_1:-19317013 | Msa0878410:CDS |
| TGAAAACAGTCATTCCTGGG+TGG | 0.711444 | 6_1:+19316999 | None:intergenic |
| TACAACACTGAAGTGTCACA+TGG | 0.758295 | 6_1:+19316061 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTTACAATTTGTT+TGG | - | chr6_1:19315896-19315915 | Msa0878410:intron | 10.0% |
| !!! | TTTAAATTATTCATCATTTT+CGG | - | chr6_1:19316382-19316401 | Msa0878410:intron | 10.0% |
| !!! | TAACAAATTTTATATCATAA+CGG | + | chr6_1:19317897-19317916 | None:intergenic | 10.0% |
| !!! | AATTTCCATTAAAATTTTAT+CGG | + | chr6_1:19318204-19318223 | None:intergenic | 10.0% |
| !! | ATCAATCAATTTATTATCTT+AGG | - | chr6_1:19315757-19315776 | Msa0878410:intron | 15.0% |
| !!! | TATATTTTAGAAATTGAGTA+GGG | - | chr6_1:19316055-19316074 | Msa0878410:CDS | 15.0% |
| !! | GAAATTATTTATGATATTAG+AGG | + | chr6_1:19316254-19316273 | None:intergenic | 15.0% |
| !!! | ATAATTAAGAACATTACTTT+TGG | + | chr6_1:19316465-19316484 | None:intergenic | 15.0% |
| !! | AAAATTATCACATTTGTATA+TGG | + | chr6_1:19316600-19316619 | None:intergenic | 15.0% |
| !! | TAAACTATATATATGTATCA+TGG | + | chr6_1:19317920-19317939 | None:intergenic | 15.0% |
| !! | TGATACATATATATAGTTTA+TGG | - | chr6_1:19317920-19317939 | Msa0878410:intron | 15.0% |
| !!! | ATTTCCATTAAAATTTTATC+GGG | + | chr6_1:19318203-19318222 | None:intergenic | 15.0% |
| !!! | TCTCTATTTTGAATTTTTTT+AGG | - | chr6_1:19318259-19318278 | Msa0878410:CDS | 15.0% |
| !!! | TTTGAAATTGAGTGTTTAAT+TGG | - | chr6_1:19315565-19315584 | Msa0878410:intron | 20.0% |
| !! | TTGTAACACTAACATATAAT+TGG | + | chr6_1:19315632-19315651 | None:intergenic | 20.0% |
| !! | ATATACACTAGAAAGATAAA+AGG | + | chr6_1:19316040-19316059 | None:intergenic | 20.0% |
| !!! | GTATATTTTAGAAATTGAGT+AGG | - | chr6_1:19316054-19316073 | Msa0878410:CDS | 20.0% |
| !!! | ACCTTACAAATTTTTTTGTA+GGG | + | chr6_1:19316092-19316111 | None:intergenic | 20.0% |
| !! | TATCTATTTATTCAACCAAT+AGG | + | chr6_1:19316280-19316299 | None:intergenic | 20.0% |
| !! | ATTGGTTGAATAAATAGATA+AGG | - | chr6_1:19316280-19316299 | Msa0878410:intron | 20.0% |
| !! | GAATTGAGATGAATTTAATT+TGG | + | chr6_1:19316914-19316933 | None:intergenic | 20.0% |
| !! | ATTAAATTCATCTCAATTCA+TGG | - | chr6_1:19316915-19316934 | Msa0878410:CDS | 20.0% |
| !! | TTAAATTCATCTCAATTCAT+GGG | - | chr6_1:19316916-19316935 | Msa0878410:CDS | 20.0% |
| !! | TTTATATTACGGTAAAATGT+AGG | - | chr6_1:19317027-19317046 | Msa0878410:CDS | 20.0% |
| !!! | GAACATATCAAATTTTGAAT+TGG | - | chr6_1:19317244-19317263 | Msa0878410:CDS | 20.0% |
| !!! | AAAATAAAGTATTGCTTACT+GGG | + | chr6_1:19317870-19317889 | None:intergenic | 20.0% |
| !!! | AAAAATAAAGTATTGCTTAC+TGG | + | chr6_1:19317871-19317890 | None:intergenic | 20.0% |
| !!! | TTATTTAACTCACTTTTAGT+GGG | + | chr6_1:19317997-19318016 | None:intergenic | 20.0% |
| !!! | ATTATTTAACTCACTTTTAG+TGG | + | chr6_1:19317998-19318017 | None:intergenic | 20.0% |
| !! | TGAGTTAAATAATTATAGCA+TGG | - | chr6_1:19318005-19318024 | Msa0878410:intron | 20.0% |
| !!! | TGAAGACTTATGATTTTATA+GGG | + | chr6_1:19318172-19318191 | None:intergenic | 20.0% |
| !!! | TTGAAGACTTATGATTTTAT+AGG | + | chr6_1:19318173-19318192 | None:intergenic | 20.0% |
| !!! | TAATCCCGATAAAATTTTAA+TGG | - | chr6_1:19318196-19318215 | Msa0878410:intron | 20.0% |
| !! | AAAGAAGAAAATGAAAGTTA+TGG | - | chr6_1:19318413-19318432 | Msa0878410:CDS | 20.0% |
| !! | AAAAAGTTGGTTATGTGAAA+AGG | - | chr6_1:19315350-19315369 | Msa0878410:CDS | 25.0% |
| !! | AAAAGTTGGTTATGTGAAAA+GGG | - | chr6_1:19315351-19315370 | Msa0878410:CDS | 25.0% |
| !! | AAATTTTTGTGTCATGTCTT+TGG | - | chr6_1:19315650-19315669 | Msa0878410:intron | 25.0% |
| !!! | ATGTGAATGTGGATTTTTTA+AGG | - | chr6_1:19315707-19315726 | Msa0878410:intron | 25.0% |
| ! | TCCCTACAAAAAAATTTGTA+AGG | - | chr6_1:19316088-19316107 | Msa0878410:CDS | 25.0% |
| !!! | CACCTTACAAATTTTTTTGT+AGG | + | chr6_1:19316093-19316112 | None:intergenic | 25.0% |
| ! | ATAAATAATTTCCCTCCTAT+TGG | - | chr6_1:19316262-19316281 | Msa0878410:intron | 25.0% |
| ! | TATTTATTCAACCAATAGGA+GGG | + | chr6_1:19316276-19316295 | None:intergenic | 25.0% |
| !!! | TTGGTTTGTTTTTTAACCAT+CGG | + | chr6_1:19316446-19316465 | None:intergenic | 25.0% |
| !!! | ATTTTTTTCCTACCTTCAAA+AGG | - | chr6_1:19316729-19316748 | Msa0878410:intron | 25.0% |
| ! | TTTGAATACATACATTGAGA+TGG | + | chr6_1:19316876-19316895 | None:intergenic | 25.0% |
| ! | ATTATTCCCAATAATAAGAC+AGG | + | chr6_1:19317164-19317183 | None:intergenic | 25.0% |
| ! | AATTTCGAATCAATATCAGA+CGG | + | chr6_1:19317306-19317325 | None:intergenic | 25.0% |
| !!! | ATCTAACTTTCTTGTTGTTT+GGG | + | chr6_1:19317357-19317376 | None:intergenic | 25.0% |
| !!! | TGGACATGAATTTTAATTCA+TGG | + | chr6_1:19317380-19317399 | None:intergenic | 25.0% |
| !! | TAAAGTCTAAAATGCAAAGT+TGG | + | chr6_1:19317400-19317419 | None:intergenic | 25.0% |
| ! | TCTACGTGTTCTTTATTATT+GGG | + | chr6_1:19317571-19317590 | None:intergenic | 25.0% |
| ! | TTCTACGTGTTCTTTATTAT+TGG | + | chr6_1:19317572-19317591 | None:intergenic | 25.0% |
| ! | TAATGTTCATGTAACATGAT+AGG | - | chr6_1:19317970-19317989 | Msa0878410:intron | 25.0% |
| ! | AATGTTCATGTAACATGATA+GGG | - | chr6_1:19317971-19317990 | Msa0878410:intron | 25.0% |
| ! | TACAAACTACAGTATTATGA+AGG | + | chr6_1:19318232-19318251 | None:intergenic | 25.0% |
| ! | TCCTTAAAAAATGTCTTTGA+TGG | - | chr6_1:19318302-19318321 | Msa0878410:CDS | 25.0% |
| !!! | TCCATCAAAGACATTTTTTA+AGG | + | chr6_1:19318306-19318325 | None:intergenic | 25.0% |
| ! | ATGATTTCAAATATTGCAGA+TGG | - | chr6_1:19318374-19318393 | Msa0878410:CDS | 25.0% |
| ! | AAGAAAATGAAAGTTATGGA+TGG | - | chr6_1:19318417-19318436 | Msa0878410:CDS | 25.0% |
| GTTAGACATGTTGAAAAAGT+TGG | - | chr6_1:19315337-19315356 | Msa0878410:CDS | 30.0% | |
| TTAACCTTGCTACTATGATA+AGG | + | chr6_1:19315397-19315416 | None:intergenic | 30.0% | |
| ! | TGAAGTGCTTTATTAGACAT+TGG | + | chr6_1:19315424-19315443 | None:intergenic | 30.0% |
| GAAATTATTTGTCTCATGCA+AGG | - | chr6_1:19315444-19315463 | Msa0878410:intron | 30.0% | |
| TCATGCAAGGAAACATTTAA+GGG | - | chr6_1:19315457-19315476 | Msa0878410:intron | 30.0% | |
| !! | CATAGTTTGTGAACATTTTG+TGG | + | chr6_1:19315502-19315521 | None:intergenic | 30.0% |
| !! | TTAGCTTTTGCAATTCATCA+AGG | - | chr6_1:19315835-19315854 | Msa0878410:intron | 30.0% |
| ! | TAGCTTTTGCAATTCATCAA+GGG | - | chr6_1:19315836-19315855 | Msa0878410:intron | 30.0% |
| AAATGGAAACTAGAGAAAGA+AGG | + | chr6_1:19315970-19315989 | None:intergenic | 30.0% | |
| CTCGAAAATGTGTTTATAAG+AGG | + | chr6_1:19316127-19316146 | None:intergenic | 30.0% | |
| TTAGTTAGATTATCCACCAT+TGG | + | chr6_1:19316222-19316241 | None:intergenic | 30.0% | |
| CTATTTATTCAACCAATAGG+AGG | + | chr6_1:19316277-19316296 | None:intergenic | 30.0% | |
| ATTAATTCTACGCAATTCGA+TGG | - | chr6_1:19316323-19316342 | Msa0878410:intron | 30.0% | |
| !!! | TGGTTTGTTTTTTAACCATC+GGG | + | chr6_1:19316445-19316464 | None:intergenic | 30.0% |
| ! | TTCTCTTTGAAAATGCTTTC+AGG | + | chr6_1:19316557-19316576 | None:intergenic | 30.0% |
| ! | CATTTTCAAAGAGAATCCAA+GGG | - | chr6_1:19316562-19316581 | Msa0878410:intron | 30.0% |
| TGCACATTAAGTCATATGAT+TGG | - | chr6_1:19316814-19316833 | Msa0878410:intron | 30.0% | |
| GCACATTAAGTCATATGATT+GGG | - | chr6_1:19316815-19316834 | Msa0878410:intron | 30.0% | |
| AACAAATTGTGAGAAACATC+AGG | + | chr6_1:19316846-19316865 | None:intergenic | 30.0% | |
| ! | CGCTGCAAACTTTTATATTA+CGG | - | chr6_1:19317016-19317035 | Msa0878410:CDS | 30.0% |
| ATATTACGGTAAAATGTAGG+CGG | - | chr6_1:19317030-19317049 | Msa0878410:CDS | 30.0% | |
| ! | TGTTGACCTGTCTTATTATT+GGG | - | chr6_1:19317155-19317174 | Msa0878410:intron | 30.0% |
| !! | GATCTAACTTTCTTGTTGTT+TGG | + | chr6_1:19317358-19317377 | None:intergenic | 30.0% |
| TGTCTGACTAAATAGAAAGT+GGG | + | chr6_1:19317535-19317554 | None:intergenic | 30.0% | |
| ATGTCTGACTAAATAGAAAG+TGG | + | chr6_1:19317536-19317555 | None:intergenic | 30.0% | |
| !!! | ACATGATATTTTTTGCAGTG+AGG | - | chr6_1:19317649-19317668 | Msa0878410:intron | 30.0% |
| AATGGATGGGATTGAATATT+TGG | - | chr6_1:19318472-19318491 | Msa0878410:CDS | 30.0% | |
| ATGGATGGGATTGAATATTT+GGG | - | chr6_1:19318473-19318492 | Msa0878410:CDS | 30.0% | |
| ! | TGGAGGTGTATCTATGAAAA+TGG | - | chr6_1:19315282-19315301 | Msa0878410:CDS | 35.0% |
| AGGTGTATCTATGAAAATGG+AGG | - | chr6_1:19315285-19315304 | Msa0878410:CDS | 35.0% | |
| GGTGTATCTATGAAAATGGA+GGG | - | chr6_1:19315286-19315305 | Msa0878410:CDS | 35.0% | |
| AAAGGGTCATTGTCAAAAAG+AGG | - | chr6_1:19315368-19315387 | Msa0878410:CDS | 35.0% | |
| GAAACCTTATCATAGTAGCA+AGG | - | chr6_1:19315390-19315409 | Msa0878410:intron | 35.0% | |
| CTCATGCAAGGAAACATTTA+AGG | - | chr6_1:19315456-19315475 | Msa0878410:intron | 35.0% | |
| ! | TGTGAACATTTTGTGGTGAA+GGG | + | chr6_1:19315495-19315514 | None:intergenic | 35.0% |
| ! | TTGTGAACATTTTGTGGTGA+AGG | + | chr6_1:19315496-19315515 | None:intergenic | 35.0% |
| CACAAACTATGTCACATTCT+TGG | - | chr6_1:19315511-19315530 | Msa0878410:intron | 35.0% | |
| !! | TTGTGTCATGTCTTTGGAAT+TGG | - | chr6_1:19315656-19315675 | Msa0878410:intron | 35.0% |
| TGTTTGTCCTTTCACATTGT+TGG | - | chr6_1:19315794-19315813 | Msa0878410:intron | 35.0% | |
| GTTTGTCCTTTCACATTGTT+GGG | - | chr6_1:19315795-19315814 | Msa0878410:intron | 35.0% | |
| !! | TATGATATTAGAGGTGTCCA+CGG | + | chr6_1:19316245-19316264 | None:intergenic | 35.0% |
| GGTTGAACTCTGAATTATCA+TGG | - | chr6_1:19316403-19316422 | Msa0878410:intron | 35.0% | |
| TTACTTAGTCCAACATCTTC+TGG | + | chr6_1:19316515-19316534 | None:intergenic | 35.0% | |
| ! | GCATTTTCAAAGAGAATCCA+AGG | - | chr6_1:19316561-19316580 | Msa0878410:intron | 35.0% |
| ATCCTAGTTAGCAATTGCAT+TGG | + | chr6_1:19316662-19316681 | None:intergenic | 35.0% | |
| !! | GAATTACTCCTTTTGAAGGT+AGG | + | chr6_1:19316740-19316759 | None:intergenic | 35.0% |
| TACTGAAAACAGTCATTCCT+GGG | + | chr6_1:19316776-19316795 | None:intergenic | 35.0% | |
| TTACTGAAAACAGTCATTCC+TGG | + | chr6_1:19316777-19316796 | None:intergenic | 35.0% | |
| ! | TGTTTTCAGTAAGCTTCTGT+TGG | - | chr6_1:19316785-19316804 | Msa0878410:intron | 35.0% |
| ! | GTTTTCAGTAAGCTTCTGTT+GGG | - | chr6_1:19316786-19316805 | Msa0878410:intron | 35.0% |
| TCATCTCAATTCATGGGATA+AGG | - | chr6_1:19316922-19316941 | Msa0878410:CDS | 35.0% | |
| ! | TTGCCCATGGGTTAAAATTA+CGG | - | chr6_1:19316984-19317003 | Msa0878410:CDS | 35.0% |
| !! | CTACCGTAATTTTAACCCAT+GGG | + | chr6_1:19316990-19317009 | None:intergenic | 35.0% |
| ! | ATGGGTTAAAATTACGGTAG+CGG | - | chr6_1:19316990-19317009 | Msa0878410:CDS | 35.0% |
| ! | CTGTTGACCTGTCTTATTAT+TGG | - | chr6_1:19317154-19317173 | Msa0878410:intron | 35.0% |
| ! | GATTCTCGAAATTTAGAACG+TGG | - | chr6_1:19317279-19317298 | Msa0878410:intron | 35.0% |
| !! | GACGATCAAGTTCTGAATTT+CGG | + | chr6_1:19317426-19317445 | None:intergenic | 35.0% |
| ! | ATGTGTGTCCATTGTTGTTA+CGG | + | chr6_1:19317498-19317517 | None:intergenic | 35.0% |
| GTCTGACTAAATAGAAAGTG+GGG | + | chr6_1:19317534-19317553 | None:intergenic | 35.0% | |
| !!! | GATATTTTTTGCAGTGAGGT+TGG | - | chr6_1:19317653-19317672 | Msa0878410:intron | 35.0% |
| TCAGTGTTGTATCCAAAAAC+TGG | - | chr6_1:19317720-19317739 | Msa0878410:intron | 35.0% | |
| CAGAAAACTCTCAAATGGAT+GGG | - | chr6_1:19318459-19318478 | Msa0878410:CDS | 35.0% | |
| TATAGGGCAGTCTCTATAAT+TGG | + | chr6_1:19318503-19318522 | None:intergenic | 35.0% | |
| GTATCTATGAAAATGGAGGG+TGG | - | chr6_1:19315289-19315308 | Msa0878410:CDS | 40.0% | |
| TGCATGTTGTGATGTGAATG+TGG | - | chr6_1:19315696-19315715 | Msa0878410:intron | 40.0% | |
| CATCTTCCCAACAATGTGAA+AGG | + | chr6_1:19315804-19315823 | None:intergenic | 40.0% | |
| AATGTAGAGCGTGATTTGAG+TGG | - | chr6_1:19316195-19316214 | Msa0878410:intron | 40.0% | |
| GTGGATAATCTAACTAACCG+TGG | - | chr6_1:19316225-19316244 | Msa0878410:intron | 40.0% | |
| ! | TTTTAACCATCGGGCTTCAA+AGG | + | chr6_1:19316436-19316455 | None:intergenic | 40.0% |
| !! | TCTTCTGGCTTCATGTTATC+TGG | + | chr6_1:19316500-19316519 | None:intergenic | 40.0% |
| AACATGAAGCCAGAAGATGT+TGG | - | chr6_1:19316503-19316522 | Msa0878410:intron | 40.0% | |
| ATGGTTGTATATGTGACCCT+TGG | + | chr6_1:19316581-19316600 | None:intergenic | 40.0% | |
| CACCAATGCAATTGCTAACT+AGG | - | chr6_1:19316657-19316676 | Msa0878410:intron | 40.0% | |
| ! | AGGGGAATTACTCCTTTTGA+AGG | + | chr6_1:19316744-19316763 | None:intergenic | 40.0% |
| TTCTTTGTAACACTTGCCCA+TGG | - | chr6_1:19316971-19316990 | Msa0878410:CDS | 40.0% | |
| TCTTTGTAACACTTGCCCAT+GGG | - | chr6_1:19316972-19316991 | Msa0878410:CDS | 40.0% | |
| !! | GCTACCGTAATTTTAACCCA+TGG | + | chr6_1:19316991-19317010 | None:intergenic | 40.0% |
| !! | CCTCTAAAATTGTTGTACCG+CGG | - | chr6_1:19317100-19317119 | Msa0878410:intron | 40.0% |
| GTGTGATTCCGTAACAACAA+TGG | - | chr6_1:19317487-19317506 | Msa0878410:intron | 40.0% | |
| CAATGGACACACATCCTATT+TGG | - | chr6_1:19317504-19317523 | Msa0878410:intron | 40.0% | |
| ! | TACAACACTGAAGTGTCACA+TGG | + | chr6_1:19317711-19317730 | None:intergenic | 40.0% |
| GTGTTGTATCCAAAAACTGG+AGG | - | chr6_1:19317723-19317742 | Msa0878410:intron | 40.0% | |
| ! | TGGATATTGCCTCCAGTTTT+TGG | + | chr6_1:19317735-19317754 | None:intergenic | 40.0% |
| GAGTTATGGCTGTGAATTCA+TGG | + | chr6_1:19317755-19317774 | None:intergenic | 40.0% | |
| AAGAACAGCACATGGAGTTA+TGG | + | chr6_1:19317769-19317788 | None:intergenic | 40.0% | |
| ATGACATCAAGAACAGCACA+TGG | + | chr6_1:19317777-19317796 | None:intergenic | 40.0% | |
| ! | TGTGCTGTTCTTGATGTCAT+TGG | - | chr6_1:19317777-19317796 | Msa0878410:intron | 40.0% |
| !! | CCATCATCTTTGGAATAAGG+AGG | + | chr6_1:19317804-19317823 | None:intergenic | 40.0% |
| CCTCCTTATTCCAAAGATGA+TGG | - | chr6_1:19317801-19317820 | Msa0878410:intron | 40.0% | |
| !! | CTGCCATCATCTTTGGAATA+AGG | + | chr6_1:19317807-19317826 | None:intergenic | 40.0% |
| ACAATCTCTGCCATCATCTT+TGG | + | chr6_1:19317814-19317833 | None:intergenic | 40.0% | |
| TACTGGGAAAAGCAGTGTAA+AGG | + | chr6_1:19317854-19317873 | None:intergenic | 40.0% | |
| GATGCCAGAAAACTCTCAAA+TGG | - | chr6_1:19318454-19318473 | Msa0878410:CDS | 40.0% | |
| ! | CCATCCATTTGAGAGTTTTC+TGG | + | chr6_1:19318461-19318480 | None:intergenic | 40.0% |
| CCAGAAAACTCTCAAATGGA+TGG | - | chr6_1:19318458-19318477 | Msa0878410:CDS | 40.0% | |
| ACGCTCTACATTAAGCGTGA+GGG | + | chr6_1:19316187-19316206 | None:intergenic | 45.0% | |
| TGATTTGAGTGGTCCAATGG+TGG | - | chr6_1:19316206-19316225 | Msa0878410:intron | 45.0% | |
| !! | TTCTTTCCTTTGAAGCCCGA+TGG | - | chr6_1:19316427-19316446 | Msa0878410:intron | 45.0% |
| ATTCCTGGGTGGTTATGAAG+GGG | + | chr6_1:19316762-19316781 | None:intergenic | 45.0% | |
| CATTCCTGGGTGGTTATGAA+GGG | + | chr6_1:19316763-19316782 | None:intergenic | 45.0% | |
| TCATTCCTGGGTGGTTATGA+AGG | + | chr6_1:19316764-19316783 | None:intergenic | 45.0% | |
| TGAAAACAGTCATTCCTGGG+TGG | + | chr6_1:19316773-19316792 | None:intergenic | 45.0% | |
| AACCTCAAGTGAGGTTGCAT+TGG | + | chr6_1:19317062-19317081 | None:intergenic | 45.0% | |
| ! | CCGCGGTACAACAATTTTAG+AGG | + | chr6_1:19317103-19317122 | None:intergenic | 45.0% |
| TTCGTTTGCAACTGCAGTTG+TGG | + | chr6_1:19317126-19317145 | None:intergenic | 45.0% | |
| TGGACACACATCCTATTTGG+TGG | - | chr6_1:19317507-19317526 | Msa0878410:intron | 45.0% | |
| AGGGCAGTCTCTATAATTGG+AGG | + | chr6_1:19318500-19318519 | None:intergenic | 45.0% | |
| !!! | ATGTTATTTTAATTTTTAAA+TGG | + | chr6_1:19315987-19316006 | None:intergenic | 5.0% |
| CGCTCTACATTAAGCGTGAG+GGG | + | chr6_1:19316186-19316205 | None:intergenic | 50.0% | |
| CACGCTCTACATTAAGCGTG+AGG | + | chr6_1:19316188-19316207 | None:intergenic | 50.0% | |
| GCGTGATTTGAGTGGTCCAA+TGG | - | chr6_1:19316203-19316222 | Msa0878410:intron | 50.0% | |
| ATTCCCCTTCATAACCACCC+AGG | - | chr6_1:19316756-19316775 | Msa0878410:intron | 50.0% | |
| GACCAATGCAACCTCACTTG+AGG | - | chr6_1:19317057-19317076 | Msa0878410:intron | 50.0% | |
| CGACATTGCAACCTCAAGTG+AGG | + | chr6_1:19317071-19317090 | None:intergenic | 50.0% | |
| GAAAGTGGGGTCCACCAAAT+AGG | + | chr6_1:19317521-19317540 | None:intergenic | 50.0% | |
| TGTGGTGAAGGGACAGTGTC+AGG | + | chr6_1:19315484-19315503 | None:intergenic | 55.0% | |
| TGCAACTGCAGTTGTGGCCG+CGG | + | chr6_1:19317120-19317139 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 19315268 | 19318523 | 19315268 | ID=Msa0878410;Name=Msa0878410 |
| chr6_1 | mRNA | 19315268 | 19318523 | 19315268 | ID=Msa0878410-mRNA-1;Parent=Msa0878410;Name=Msa0878410-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.2|1|1|1|5|0|293 |
| chr6_1 | exon | 19318259 | 19318523 | 19318259 | ID=Msa0878410-mRNA-1:exon:5265;Parent=Msa0878410-mRNA-1 |
| chr6_1 | exon | 19317169 | 19317290 | 19317169 | ID=Msa0878410-mRNA-1:exon:5264;Parent=Msa0878410-mRNA-1 |
| chr6_1 | exon | 19316909 | 19317068 | 19316909 | ID=Msa0878410-mRNA-1:exon:5263;Parent=Msa0878410-mRNA-1 |
| chr6_1 | exon | 19315921 | 19316124 | 19315921 | ID=Msa0878410-mRNA-1:exon:5262;Parent=Msa0878410-mRNA-1 |
| chr6_1 | exon | 19315268 | 19315398 | 19315268 | ID=Msa0878410-mRNA-1:exon:5261;Parent=Msa0878410-mRNA-1 |
| chr6_1 | CDS | 19318259 | 19318523 | 19318259 | ID=Msa0878410-mRNA-1:cds;Parent=Msa0878410-mRNA-1 |
| chr6_1 | CDS | 19317169 | 19317290 | 19317169 | ID=Msa0878410-mRNA-1:cds;Parent=Msa0878410-mRNA-1 |
| chr6_1 | CDS | 19316909 | 19317068 | 19316909 | ID=Msa0878410-mRNA-1:cds;Parent=Msa0878410-mRNA-1 |
| chr6_1 | CDS | 19315921 | 19316124 | 19315921 | ID=Msa0878410-mRNA-1:cds;Parent=Msa0878410-mRNA-1 |
| chr6_1 | CDS | 19315268 | 19315398 | 19315268 | ID=Msa0878410-mRNA-1:cds;Parent=Msa0878410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
