Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980490 | XP_013451540.2 | 97.270 | 293 | 8 | 0 | 1 | 293 | 1 | 293 | 0.0 | 596 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980490 | sp|Q8LGJ5|PCO2_ARATH | 52.743 | 237 | 101 | 6 | 58 | 290 | 47 | 276 | 4.98e-76 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980490 | A0A396HBT9 | 97.270 | 293 | 8 | 0 | 1 | 293 | 1 | 293 | 0.0 | 596 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0709820 | Msa0980490 | 0.803650 | 3.150426e-49 | -8.615850e-47 |
| Msa0735340 | Msa0980490 | 0.816829 | 4.520383e-52 | -8.615850e-47 |
| Msa0777210 | Msa0980490 | 0.811511 | 6.750988e-51 | -8.615850e-47 |
| Msa0375500 | Msa0980490 | 0.822747 | 2.007427e-53 | -8.615850e-47 |
| Msa0465420 | Msa0980490 | 0.801745 | 7.790260e-49 | -8.615850e-47 |
| Msa0471210 | Msa0980490 | 0.814381 | 1.586247e-51 | -8.615850e-47 |
| Msa0980490 | Msa1402000 | 0.802741 | 4.859421e-49 | -8.615850e-47 |
| Msa0878410 | Msa0980490 | 0.971963 | 5.351846e-134 | -8.615850e-47 |
| Msa0944160 | Msa0980490 | 0.871765 | 5.324660e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980490 | MtrunA17_Chr6g0460971 | 97.270 | 293 | 8 | 0 | 1 | 293 | 1 | 293 | 0.0 | 596 |
| Msa0980490 | MtrunA17_Chr7g0253891 | 78.169 | 284 | 59 | 3 | 12 | 293 | 1 | 283 | 2.19e-162 | 452 |
| Msa0980490 | MtrunA17_Chr6g0452941 | 49.793 | 241 | 112 | 5 | 58 | 291 | 41 | 279 | 6.42e-75 | 230 |
| Msa0980490 | MtrunA17_Chr7g0216881 | 51.770 | 226 | 99 | 4 | 58 | 278 | 45 | 265 | 5.16e-74 | 228 |
| Msa0980490 | MtrunA17_Chr2g0307681 | 44.177 | 249 | 120 | 6 | 55 | 288 | 25 | 269 | 7.51e-67 | 209 |
| Msa0980490 | MtrunA17_Chr2g0320221 | 40.833 | 240 | 125 | 7 | 58 | 288 | 5 | 236 | 3.68e-53 | 173 |
| Msa0980490 | MtrunA17_Chr4g0041281 | 39.256 | 242 | 129 | 7 | 57 | 288 | 4 | 237 | 9.70e-53 | 172 |
| Msa0980490 | MtrunA17_Chr2g0283961 | 38.843 | 242 | 132 | 6 | 58 | 288 | 4 | 240 | 1.88e-50 | 166 |
| Msa0980490 | MtrunA17_Chr5g0426531 | 35.743 | 249 | 130 | 6 | 53 | 289 | 1 | 231 | 5.68e-44 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980490 | AT5G39890.1 | 52.743 | 237 | 101 | 6 | 58 | 290 | 47 | 276 | 5.06e-77 | 236 |
| Msa0980490 | AT5G15120.1 | 46.457 | 254 | 122 | 7 | 44 | 288 | 43 | 291 | 3.18e-73 | 227 |
| Msa0980490 | AT5G39890.2 | 56.410 | 195 | 75 | 5 | 58 | 249 | 47 | 234 | 5.06e-68 | 212 |
| Msa0980490 | AT1G18490.1 | 40.449 | 267 | 142 | 6 | 37 | 288 | 16 | 280 | 8.84e-63 | 200 |
| Msa0980490 | AT3G58670.2 | 42.917 | 240 | 124 | 6 | 58 | 288 | 5 | 240 | 1.03e-56 | 183 |
| Msa0980490 | AT3G58670.3 | 42.917 | 240 | 124 | 6 | 58 | 288 | 5 | 240 | 1.03e-56 | 183 |
| Msa0980490 | AT3G58670.1 | 42.917 | 240 | 124 | 6 | 58 | 288 | 5 | 240 | 1.03e-56 | 183 |
| Msa0980490 | AT2G42670.1 | 40.336 | 238 | 130 | 5 | 59 | 288 | 6 | 239 | 1.73e-55 | 180 |
| Msa0980490 | AT2G42670.2 | 40.167 | 239 | 130 | 6 | 59 | 288 | 6 | 240 | 1.09e-53 | 175 |
| Msa0980490 | AT3G58670.4 | 48.571 | 175 | 86 | 3 | 115 | 288 | 26 | 197 | 3.35e-49 | 162 |
| Msa0980490 | AT2G42670.3 | 46.203 | 158 | 81 | 3 | 132 | 288 | 18 | 172 | 2.21e-40 | 139 |
Find 51 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGGATGGGATTGAATATT+TGG | 0.087793 | 6_4:+18738291 | Msa0980490:CDS |
| CTCATGCAAGGAAACATTTA+AGG | 0.167944 | 6_4:+18735278 | Msa0980490:CDS |
| TTCTCTTTGAAAATGCTTTC+AGG | 0.169239 | 6_4:-18736376 | None:intergenic |
| AAAATTATCACATTTGTATA+TGG | 0.267408 | 6_4:-18736419 | None:intergenic |
| TTACTTAGTCCAACATCTTC+TGG | 0.273780 | 6_4:-18736334 | None:intergenic |
| ACAATCTCTGCCATCATCTT+TGG | 0.288346 | 6_4:-18737630 | None:intergenic |
| TATAGGGCAGTCTCTATAAT+TGG | 0.298126 | 6_4:-18738319 | None:intergenic |
| TGGAGGTGTATCTATGAAAA+TGG | 0.310811 | 6_4:+18735104 | Msa0980490:CDS |
| CTGCCATCATCTTTGGAATA+AGG | 0.310958 | 6_4:-18737623 | None:intergenic |
| CACAAACTATGTCACATTCT+TGG | 0.323808 | 6_4:+18735333 | Msa0980490:CDS |
| TGCACATTAAGTCATATGAT+TGG | 0.371146 | 6_4:+18736633 | Msa0980490:CDS |
| GTTGATAATCTGATCTTATA+GGG | 0.375737 | 6_4:-18738335 | None:intergenic |
| TGTGCTGTTCTTGATGTCAT+TGG | 0.379870 | 6_4:+18737596 | Msa0980490:CDS |
| TTAACCTTGCTACTATGATA+AGG | 0.405817 | 6_4:-18735216 | None:intergenic |
| AAAAGTTGGTTATGTGAAAA+GGG | 0.420424 | 6_4:+18735173 | Msa0980490:CDS |
| TGTGGTGAAGGGACAGTGTC+AGG | 0.421729 | 6_4:-18735303 | None:intergenic |
| TAACATATGAAGGAAGATAT+TGG | 0.443132 | 6_4:+18735084 | None:intergenic |
| ATGGATGGGATTGAATATTT+GGG | 0.444661 | 6_4:+18738292 | Msa0980490:CDS |
| GAGTTATGGCTGTGAATTCA+TGG | 0.446167 | 6_4:-18737571 | None:intergenic |
| TTACTGAAAACAGTCATTCC+TGG | 0.448277 | 6_4:-18736593 | None:intergenic |
| GCACATTAAGTCATATGATT+GGG | 0.450457 | 6_4:+18736634 | Msa0980490:CDS |
| TCATTCCTGGGTGGTTATGA+AGG | 0.451907 | 6_4:-18736580 | None:intergenic |
| AACAAATTGTGAGAAACATC+AGG | 0.461333 | 6_4:-18736662 | None:intergenic |
| AAAGAAGAAAATGAAAGTTA+TGG | 0.462932 | 6_4:+18738232 | Msa0980490:CDS |
| GATGCCAGAAAACTCTCAAA+TGG | 0.465281 | 6_4:+18738273 | Msa0980490:CDS |
| AAGAACAGCACATGGAGTTA+TGG | 0.471493 | 6_4:-18737585 | None:intergenic |
| CCAGAAAACTCTCAAATGGA+TGG | 0.498542 | 6_4:+18738277 | Msa0980490:CDS |
| GAAATTATTTGTCTCATGCA+AGG | 0.509216 | 6_4:+18735266 | Msa0980490:CDS |
| TGAAGTGCTTTATTAGACAT+TGG | 0.510691 | 6_4:-18735243 | None:intergenic |
| TCATGCAAGGAAACATTTAA+GGG | 0.532868 | 6_4:+18735279 | Msa0980490:CDS |
| CCTCCTTATTCCAAAGATGA+TGG | 0.537366 | 6_4:+18737620 | Msa0980490:CDS |
| ATGGTTGTATATGTGACCCT+TGG | 0.543482 | 6_4:-18736400 | None:intergenic |
| TACTGGGAAAAGCAGTGTAA+AGG | 0.545686 | 6_4:-18737670 | None:intergenic |
| TTTGAATACATACATTGAGA+TGG | 0.546750 | 6_4:-18736692 | None:intergenic |
| TACTGAAAACAGTCATTCCT+GGG | 0.547209 | 6_4:-18736592 | None:intergenic |
| CATTCCTGGGTGGTTATGAA+GGG | 0.552215 | 6_4:-18736579 | None:intergenic |
| AGGGCAGTCTCTATAATTGG+AGG | 0.559900 | 6_4:-18738316 | None:intergenic |
| CAGAAAACTCTCAAATGGAT+GGG | 0.570322 | 6_4:+18738278 | Msa0980490:CDS |
| AAGAAAATGAAAGTTATGGA+TGG | 0.575704 | 6_4:+18738236 | Msa0980490:CDS |
| AGGTGTATCTATGAAAATGG+AGG | 0.615461 | 6_4:+18735107 | Msa0980490:CDS |
| AACATGAAGCCAGAAGATGT+TGG | 0.636253 | 6_4:+18736325 | Msa0980490:CDS |
| CCATCATCTTTGGAATAAGG+AGG | 0.645071 | 6_4:-18737620 | None:intergenic |
| CATATGAAGGAAGATATTGG+AGG | 0.649850 | 6_4:+18735087 | None:intergenic |
| GAAACCTTATCATAGTAGCA+AGG | 0.650637 | 6_4:+18735212 | Msa0980490:CDS |
| ATTCCTGGGTGGTTATGAAG+GGG | 0.652761 | 6_4:-18736578 | None:intergenic |
| ATGACATCAAGAACAGCACA+TGG | 0.655518 | 6_4:-18737593 | None:intergenic |
| GGTGTATCTATGAAAATGGA+GGG | 0.655645 | 6_4:+18735108 | Msa0980490:CDS |
| GTATCTATGAAAATGGAGGG+TGG | 0.667112 | 6_4:+18735111 | Msa0980490:CDS |
| ATTCCCCTTCATAACCACCC+AGG | 0.695707 | 6_4:+18736575 | Msa0980490:CDS |
| TGAAAACAGTCATTCCTGGG+TGG | 0.711444 | 6_4:-18736589 | None:intergenic |
| TACAACACTGAAGTGTCACA+TGG | 0.758295 | 6_4:-18737527 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTTACAATTTGTT+TGG | + | chr6_4:18735718-18735737 | Msa0980490:intron | 10.0% |
| !!! | TTTAAATTATTCATCATTTT+CGG | + | chr6_4:18736204-18736223 | Msa0980490:intron | 10.0% |
| !!! | TAACAAATTTTATATCATAA+CGG | - | chr6_4:18737716-18737735 | None:intergenic | 10.0% |
| !!! | AATTTCCATTAAAATTTTAT+CGG | - | chr6_4:18738023-18738042 | None:intergenic | 10.0% |
| !! | ATCAATCAATTTATTATCTT+AGG | + | chr6_4:18735579-18735598 | Msa0980490:intron | 15.0% |
| !!! | TATATTTTAGAAATTGAGTA+GGG | + | chr6_4:18735877-18735896 | Msa0980490:intron | 15.0% |
| !! | GAAATTATTTATGATATTAG+AGG | - | chr6_4:18736075-18736094 | None:intergenic | 15.0% |
| !!! | ATAATTAAGAACATTACTTT+TGG | - | chr6_4:18736287-18736306 | None:intergenic | 15.0% |
| !! | AAAATTATCACATTTGTATA+TGG | - | chr6_4:18736422-18736441 | None:intergenic | 15.0% |
| !! | TAAACTATATATATGTATCA+TGG | - | chr6_4:18737739-18737758 | None:intergenic | 15.0% |
| !! | TGATACATATATATAGTTTA+TGG | + | chr6_4:18737739-18737758 | Msa0980490:intron | 15.0% |
| !!! | ATTTCCATTAAAATTTTATC+GGG | - | chr6_4:18738022-18738041 | None:intergenic | 15.0% |
| !!! | TCTCTATTTTGAATTTTTTT+AGG | + | chr6_4:18738078-18738097 | Msa0980490:intron | 15.0% |
| !!! | TTTGAAATTGAGTGTTTAAT+TGG | + | chr6_4:18735387-18735406 | Msa0980490:intron | 20.0% |
| !! | TTGTAACACTAACATATAAT+TGG | - | chr6_4:18735454-18735473 | None:intergenic | 20.0% |
| !! | ATATACACTAGAAAGATAAA+AGG | - | chr6_4:18735862-18735881 | None:intergenic | 20.0% |
| !!! | GTATATTTTAGAAATTGAGT+AGG | + | chr6_4:18735876-18735895 | Msa0980490:intron | 20.0% |
| !! | TATCTATTTATTCAACCAAT+AGG | - | chr6_4:18736101-18736120 | None:intergenic | 20.0% |
| !! | ATTGGTTGAATAAATAGATA+AGG | + | chr6_4:18736101-18736120 | Msa0980490:intron | 20.0% |
| !! | GAATTGAGATGAATTTAATT+TGG | - | chr6_4:18736733-18736752 | None:intergenic | 20.0% |
| !! | ATTAAATTCATCTCAATTCA+TGG | + | chr6_4:18736734-18736753 | Msa0980490:intron | 20.0% |
| !! | TTAAATTCATCTCAATTCAT+GGG | + | chr6_4:18736735-18736754 | Msa0980490:intron | 20.0% |
| !! | TTTATATTACGGTAAAATGT+AGG | + | chr6_4:18736846-18736865 | Msa0980490:intron | 20.0% |
| !!! | AAAATAAAGTATTGCTTACT+GGG | - | chr6_4:18737689-18737708 | None:intergenic | 20.0% |
| !!! | AAAAATAAAGTATTGCTTAC+TGG | - | chr6_4:18737690-18737709 | None:intergenic | 20.0% |
| !!! | TTATTTAACTCACTTTTAGT+GGG | - | chr6_4:18737816-18737835 | None:intergenic | 20.0% |
| !!! | ATTATTTAACTCACTTTTAG+TGG | - | chr6_4:18737817-18737836 | None:intergenic | 20.0% |
| !! | TGAGTTAAATAATTATAGCA+TGG | + | chr6_4:18737824-18737843 | Msa0980490:intron | 20.0% |
| !!! | TGAAGACTTATGATTTTATA+GGG | - | chr6_4:18737991-18738010 | None:intergenic | 20.0% |
| !!! | TTGAAGACTTATGATTTTAT+AGG | - | chr6_4:18737992-18738011 | None:intergenic | 20.0% |
| !!! | TAATCCCGATAAAATTTTAA+TGG | + | chr6_4:18738015-18738034 | Msa0980490:intron | 20.0% |
| !! | AAAGAAGAAAATGAAAGTTA+TGG | + | chr6_4:18738232-18738251 | Msa0980490:CDS | 20.0% |
| !! | AAAAAGTTGGTTATGTGAAA+AGG | + | chr6_4:18735172-18735191 | Msa0980490:CDS | 25.0% |
| !! | AAAAGTTGGTTATGTGAAAA+GGG | + | chr6_4:18735173-18735192 | Msa0980490:CDS | 25.0% |
| !! | AAATTTTTGTGTCATGTCTT+TGG | + | chr6_4:18735472-18735491 | Msa0980490:intron | 25.0% |
| !!! | ATGTGAATGTGGATTTTTTA+AGG | + | chr6_4:18735529-18735548 | Msa0980490:intron | 25.0% |
| ! | ATCCCTACAAAAAAATTGTA+AGG | + | chr6_4:18735909-18735928 | Msa0980490:intron | 25.0% |
| !!! | CACCTTACAATTTTTTTGTA+GGG | - | chr6_4:18735914-18735933 | None:intergenic | 25.0% |
| !!! | TCACCTTACAATTTTTTTGT+AGG | - | chr6_4:18735915-18735934 | None:intergenic | 25.0% |
| ! | ATAAATAATTTCCCTCCTAT+TGG | + | chr6_4:18736083-18736102 | Msa0980490:intron | 25.0% |
| ! | TATTTATTCAACCAATAGGA+GGG | - | chr6_4:18736097-18736116 | None:intergenic | 25.0% |
| !!! | TTGGTTTGTTTTTTAACCAT+CGG | - | chr6_4:18736268-18736287 | None:intergenic | 25.0% |
| !!! | ATTTTTTTCCTACCTTCAAA+AGG | + | chr6_4:18736548-18736567 | Msa0980490:CDS | 25.0% |
| ! | TTTGAATACATACATTGAGA+TGG | - | chr6_4:18736695-18736714 | None:intergenic | 25.0% |
| ! | ATTATTCCCAATAATAAGAC+AGG | - | chr6_4:18736983-18737002 | None:intergenic | 25.0% |
| ! | AATTTCGAATCAATATCAGA+CGG | - | chr6_4:18737125-18737144 | None:intergenic | 25.0% |
| !!! | ATCTAACTTTCTTGTTGTTT+GGG | - | chr6_4:18737176-18737195 | None:intergenic | 25.0% |
| !!! | TGGACATGAATTTTAATTCA+TGG | - | chr6_4:18737199-18737218 | None:intergenic | 25.0% |
| !! | TAAAGTCTAAAATGCAAAGT+TGG | - | chr6_4:18737219-18737238 | None:intergenic | 25.0% |
| ! | TCTACGTGTTCTTTATTATT+GGG | - | chr6_4:18737390-18737409 | None:intergenic | 25.0% |
| ! | TTCTACGTGTTCTTTATTAT+TGG | - | chr6_4:18737391-18737410 | None:intergenic | 25.0% |
| ! | TAATGTTCATGTAACATGAT+AGG | + | chr6_4:18737789-18737808 | Msa0980490:intron | 25.0% |
| ! | AATGTTCATGTAACATGATA+GGG | + | chr6_4:18737790-18737809 | Msa0980490:intron | 25.0% |
| ! | TACAAACTACAGTATTATGA+AGG | - | chr6_4:18738051-18738070 | None:intergenic | 25.0% |
| ! | TCCTTAAAAAATGTCTTTGA+TGG | + | chr6_4:18738121-18738140 | Msa0980490:intron | 25.0% |
| !!! | TCCATCAAAGACATTTTTTA+AGG | - | chr6_4:18738125-18738144 | None:intergenic | 25.0% |
| ! | ATGATTTCAAATATTGCAGA+TGG | + | chr6_4:18738193-18738212 | Msa0980490:intron | 25.0% |
| ! | AAGAAAATGAAAGTTATGGA+TGG | + | chr6_4:18738236-18738255 | Msa0980490:CDS | 25.0% |
| GTTAGACATGTTGAAAAAGT+TGG | + | chr6_4:18735159-18735178 | Msa0980490:CDS | 30.0% | |
| TTAACCTTGCTACTATGATA+AGG | - | chr6_4:18735219-18735238 | None:intergenic | 30.0% | |
| ! | TGAAGTGCTTTATTAGACAT+TGG | - | chr6_4:18735246-18735265 | None:intergenic | 30.0% |
| GAAATTATTTGTCTCATGCA+AGG | + | chr6_4:18735266-18735285 | Msa0980490:CDS | 30.0% | |
| TCATGCAAGGAAACATTTAA+GGG | + | chr6_4:18735279-18735298 | Msa0980490:CDS | 30.0% | |
| !! | CATAGTTTGTGAACATTTTG+TGG | - | chr6_4:18735324-18735343 | None:intergenic | 30.0% |
| !! | TTAGCTTTTGCAATTCATCA+AGG | + | chr6_4:18735657-18735676 | Msa0980490:intron | 30.0% |
| ! | TAGCTTTTGCAATTCATCAA+GGG | + | chr6_4:18735658-18735677 | Msa0980490:intron | 30.0% |
| AAATGGAAACTAGAGAAAGA+AGG | - | chr6_4:18735792-18735811 | None:intergenic | 30.0% | |
| CTCGAAAATGTGTTTATAAG+AGG | - | chr6_4:18735948-18735967 | None:intergenic | 30.0% | |
| TTAGTTAGATTATCCACCAT+TGG | - | chr6_4:18736043-18736062 | None:intergenic | 30.0% | |
| CTATTTATTCAACCAATAGG+AGG | - | chr6_4:18736098-18736117 | None:intergenic | 30.0% | |
| ATTAATTCTACGCAATTCGA+TGG | + | chr6_4:18736144-18736163 | Msa0980490:intron | 30.0% | |
| !!! | TGGTTTGTTTTTTAACCATC+GGG | - | chr6_4:18736267-18736286 | None:intergenic | 30.0% |
| ! | TTCTCTTTGAAAATGCTTTC+AGG | - | chr6_4:18736379-18736398 | None:intergenic | 30.0% |
| ! | CATTTTCAAAGAGAATCCAA+GGG | + | chr6_4:18736384-18736403 | Msa0980490:CDS | 30.0% |
| TATATCCTTAGCAATTGCAT+TGG | - | chr6_4:18736484-18736503 | None:intergenic | 30.0% | |
| TGCACATTAAGTCATATGAT+TGG | + | chr6_4:18736633-18736652 | Msa0980490:CDS | 30.0% | |
| GCACATTAAGTCATATGATT+GGG | + | chr6_4:18736634-18736653 | Msa0980490:CDS | 30.0% | |
| AACAAATTGTGAGAAACATC+AGG | - | chr6_4:18736665-18736684 | None:intergenic | 30.0% | |
| ! | CGCTGCAAACTTTTATATTA+CGG | + | chr6_4:18736835-18736854 | Msa0980490:intron | 30.0% |
| ! | TGTTGACCTGTCTTATTATT+GGG | + | chr6_4:18736974-18736993 | Msa0980490:intron | 30.0% |
| !! | GATCTAACTTTCTTGTTGTT+TGG | - | chr6_4:18737177-18737196 | None:intergenic | 30.0% |
| TGTCTGACTAAATAGAAAGT+GGG | - | chr6_4:18737354-18737373 | None:intergenic | 30.0% | |
| ATGTCTGACTAAATAGAAAG+TGG | - | chr6_4:18737355-18737374 | None:intergenic | 30.0% | |
| AATGGATGGGATTGAATATT+TGG | + | chr6_4:18738291-18738310 | Msa0980490:CDS | 30.0% | |
| ATGGATGGGATTGAATATTT+GGG | + | chr6_4:18738292-18738311 | Msa0980490:CDS | 30.0% | |
| ! | TGGAGGTGTATCTATGAAAA+TGG | + | chr6_4:18735104-18735123 | Msa0980490:CDS | 35.0% |
| AGGTGTATCTATGAAAATGG+AGG | + | chr6_4:18735107-18735126 | Msa0980490:CDS | 35.0% | |
| GGTGTATCTATGAAAATGGA+GGG | + | chr6_4:18735108-18735127 | Msa0980490:CDS | 35.0% | |
| AAAGGGTCATTGTCAAAAAG+AGG | + | chr6_4:18735190-18735209 | Msa0980490:CDS | 35.0% | |
| GAAACCTTATCATAGTAGCA+AGG | + | chr6_4:18735212-18735231 | Msa0980490:CDS | 35.0% | |
| CTCATGCAAGGAAACATTTA+AGG | + | chr6_4:18735278-18735297 | Msa0980490:CDS | 35.0% | |
| ! | TGTGAACATTTTGTGGTGAA+GGG | - | chr6_4:18735317-18735336 | None:intergenic | 35.0% |
| ! | TTGTGAACATTTTGTGGTGA+AGG | - | chr6_4:18735318-18735337 | None:intergenic | 35.0% |
| CACAAACTATGTCACATTCT+TGG | + | chr6_4:18735333-18735352 | Msa0980490:CDS | 35.0% | |
| !! | TTGTGTCATGTCTTTGGAAT+TGG | + | chr6_4:18735478-18735497 | Msa0980490:intron | 35.0% |
| TGTTTGTCCTTTCACATTGT+TGG | + | chr6_4:18735616-18735635 | Msa0980490:intron | 35.0% | |
| GTTTGTCCTTTCACATTGTT+GGG | + | chr6_4:18735617-18735636 | Msa0980490:intron | 35.0% | |
| !! | TATGATATTAGAGGTGTCCA+CGG | - | chr6_4:18736066-18736085 | None:intergenic | 35.0% |
| TTACTTAGTCCAACATCTTC+TGG | - | chr6_4:18736337-18736356 | None:intergenic | 35.0% | |
| ! | GCATTTTCAAAGAGAATCCA+AGG | + | chr6_4:18736383-18736402 | Msa0980490:CDS | 35.0% |
| !! | GAATTACTCCTTTTGAAGGT+AGG | - | chr6_4:18736559-18736578 | None:intergenic | 35.0% |
| TACTGAAAACAGTCATTCCT+GGG | - | chr6_4:18736595-18736614 | None:intergenic | 35.0% | |
| TTACTGAAAACAGTCATTCC+TGG | - | chr6_4:18736596-18736615 | None:intergenic | 35.0% | |
| ! | TGTTTTCAGTAAGCTTCTGT+TGG | + | chr6_4:18736604-18736623 | Msa0980490:CDS | 35.0% |
| ! | GTTTTCAGTAAGCTTCTGTT+GGG | + | chr6_4:18736605-18736624 | Msa0980490:CDS | 35.0% |
| TCATCTCAATTCATGGGATA+AGG | + | chr6_4:18736741-18736760 | Msa0980490:intron | 35.0% | |
| ! | TTGCCCATGGGTTAAAATTA+CGG | + | chr6_4:18736803-18736822 | Msa0980490:intron | 35.0% |
| !! | CTACCGTAATTTTAACCCAT+GGG | - | chr6_4:18736809-18736828 | None:intergenic | 35.0% |
| ! | ATGGGTTAAAATTACGGTAG+CGG | + | chr6_4:18736809-18736828 | Msa0980490:intron | 35.0% |
| ! | CTGTTGACCTGTCTTATTAT+TGG | + | chr6_4:18736973-18736992 | Msa0980490:intron | 35.0% |
| ! | GATTCTCGAAATTTAGAACG+TGG | + | chr6_4:18737098-18737117 | Msa0980490:intron | 35.0% |
| !! | GACGATCAAGTTCTGAATTT+CGG | - | chr6_4:18737245-18737264 | None:intergenic | 35.0% |
| GTGTGATTCCATAACAACAA+TGG | + | chr6_4:18737306-18737325 | Msa0980490:intron | 35.0% | |
| ! | ATGTGTGTCCATTGTTGTTA+TGG | - | chr6_4:18737317-18737336 | None:intergenic | 35.0% |
| GTCTGACTAAATAGAAAGTG+GGG | - | chr6_4:18737353-18737372 | None:intergenic | 35.0% | |
| !!! | ACATGCTATTTTTTGCAGTG+AGG | + | chr6_4:18737468-18737487 | Msa0980490:intron | 35.0% |
| TCAGTGTTGTATCCAAAAAC+TGG | + | chr6_4:18737539-18737558 | Msa0980490:CDS | 35.0% | |
| CAGAAAACTCTCAAATGGAT+GGG | + | chr6_4:18738278-18738297 | Msa0980490:CDS | 35.0% | |
| TATAGGGCAGTCTCTATAAT+TGG | - | chr6_4:18738322-18738341 | None:intergenic | 35.0% | |
| GTATCTATGAAAATGGAGGG+TGG | + | chr6_4:18735111-18735130 | Msa0980490:CDS | 40.0% | |
| TGCATGTTGTGATGTGAATG+TGG | + | chr6_4:18735518-18735537 | Msa0980490:intron | 40.0% | |
| CATCTTCCCAACAATGTGAA+AGG | - | chr6_4:18735626-18735645 | None:intergenic | 40.0% | |
| AATGTAGAGCGTGATTTGAG+TGG | + | chr6_4:18736016-18736035 | Msa0980490:intron | 40.0% | |
| GTGGATAATCTAACTAACCG+TGG | + | chr6_4:18736046-18736065 | Msa0980490:intron | 40.0% | |
| GGCTGAACTCTGAATTATCA+TGG | + | chr6_4:18736225-18736244 | Msa0980490:intron | 40.0% | |
| ! | TTTTAACCATCGGGCTTCAA+AGG | - | chr6_4:18736258-18736277 | None:intergenic | 40.0% |
| !! | TCTTCTGGCTTCATGTTATC+TGG | - | chr6_4:18736322-18736341 | None:intergenic | 40.0% |
| AACATGAAGCCAGAAGATGT+TGG | + | chr6_4:18736325-18736344 | Msa0980490:CDS | 40.0% | |
| ATGGTTGTATATGTGACCCT+TGG | - | chr6_4:18736403-18736422 | None:intergenic | 40.0% | |
| GTTCACCAATGCAATTGCTA+AGG | + | chr6_4:18736476-18736495 | Msa0980490:intron | 40.0% | |
| ! | AGGGGAATTACTCCTTTTGA+AGG | - | chr6_4:18736563-18736582 | None:intergenic | 40.0% |
| TTCTTTGTAACACTTGCCCA+TGG | + | chr6_4:18736790-18736809 | Msa0980490:intron | 40.0% | |
| TCTTTGTAACACTTGCCCAT+GGG | + | chr6_4:18736791-18736810 | Msa0980490:intron | 40.0% | |
| !! | GCTACCGTAATTTTAACCCA+TGG | - | chr6_4:18736810-18736829 | None:intergenic | 40.0% |
| !! | CCTCTAAAATTGTTGTACCG+CGG | + | chr6_4:18736919-18736938 | Msa0980490:intron | 40.0% |
| CAATGGACACACATCCTATT+TGG | + | chr6_4:18737323-18737342 | Msa0980490:intron | 40.0% | |
| !!! | GCTATTTTTTGCAGTGAGGT+TGG | + | chr6_4:18737472-18737491 | Msa0980490:intron | 40.0% |
| ! | TACAACACTGAAGTGTCACA+TGG | - | chr6_4:18737530-18737549 | None:intergenic | 40.0% |
| GTGTTGTATCCAAAAACTGG+AGG | + | chr6_4:18737542-18737561 | Msa0980490:CDS | 40.0% | |
| ! | TGGATATTGCCTCCAGTTTT+TGG | - | chr6_4:18737554-18737573 | None:intergenic | 40.0% |
| GAGTTATGGCTGTGAATTCA+TGG | - | chr6_4:18737574-18737593 | None:intergenic | 40.0% | |
| AAGAACAGCACATGGAGTTA+TGG | - | chr6_4:18737588-18737607 | None:intergenic | 40.0% | |
| ATGACATCAAGAACAGCACA+TGG | - | chr6_4:18737596-18737615 | None:intergenic | 40.0% | |
| ! | TGTGCTGTTCTTGATGTCAT+TGG | + | chr6_4:18737596-18737615 | Msa0980490:CDS | 40.0% |
| !! | CCATCATCTTTGGAATAAGG+AGG | - | chr6_4:18737623-18737642 | None:intergenic | 40.0% |
| CCTCCTTATTCCAAAGATGA+TGG | + | chr6_4:18737620-18737639 | Msa0980490:CDS | 40.0% | |
| !! | CTGCCATCATCTTTGGAATA+AGG | - | chr6_4:18737626-18737645 | None:intergenic | 40.0% |
| ACAATCTCTGCCATCATCTT+TGG | - | chr6_4:18737633-18737652 | None:intergenic | 40.0% | |
| TACTGGGAAAAGCAGTGTAA+AGG | - | chr6_4:18737673-18737692 | None:intergenic | 40.0% | |
| GATGCCAGAAAACTCTCAAA+TGG | + | chr6_4:18738273-18738292 | Msa0980490:CDS | 40.0% | |
| ! | CCATCCATTTGAGAGTTTTC+TGG | - | chr6_4:18738280-18738299 | None:intergenic | 40.0% |
| CCAGAAAACTCTCAAATGGA+TGG | + | chr6_4:18738277-18738296 | Msa0980490:CDS | 40.0% | |
| ACGCTCTACATTAAGCGTGA+GGG | - | chr6_4:18736008-18736027 | None:intergenic | 45.0% | |
| TGATTTGAGTGGTCCAATGG+TGG | + | chr6_4:18736027-18736046 | Msa0980490:intron | 45.0% | |
| !! | TTCTTTCCTTTGAAGCCCGA+TGG | + | chr6_4:18736249-18736268 | Msa0980490:intron | 45.0% |
| ATTCCTGGGTGGTTATGAAG+GGG | - | chr6_4:18736581-18736600 | None:intergenic | 45.0% | |
| CATTCCTGGGTGGTTATGAA+GGG | - | chr6_4:18736582-18736601 | None:intergenic | 45.0% | |
| TCATTCCTGGGTGGTTATGA+AGG | - | chr6_4:18736583-18736602 | None:intergenic | 45.0% | |
| TGAAAACAGTCATTCCTGGG+TGG | - | chr6_4:18736592-18736611 | None:intergenic | 45.0% | |
| AACCTCAAGTGTGGTTGCAT+TGG | - | chr6_4:18736881-18736900 | None:intergenic | 45.0% | |
| ! | CCGCGGTACAACAATTTTAG+AGG | - | chr6_4:18736922-18736941 | None:intergenic | 45.0% |
| TTCGTTTGCAACTGCAGTTG+TGG | - | chr6_4:18736945-18736964 | None:intergenic | 45.0% | |
| TGGACACACATCCTATTTGG+TGG | + | chr6_4:18737326-18737345 | Msa0980490:intron | 45.0% | |
| AGGGCAGTCTCTATAATTGG+AGG | - | chr6_4:18738319-18738338 | None:intergenic | 45.0% | |
| !!! | ATGTTATTTTAATTTTTAAA+TGG | - | chr6_4:18735809-18735828 | None:intergenic | 5.0% |
| CGCTCTACATTAAGCGTGAG+GGG | - | chr6_4:18736007-18736026 | None:intergenic | 50.0% | |
| CACGCTCTACATTAAGCGTG+AGG | - | chr6_4:18736009-18736028 | None:intergenic | 50.0% | |
| GCGTGATTTGAGTGGTCCAA+TGG | + | chr6_4:18736024-18736043 | Msa0980490:intron | 50.0% | |
| ATTCCCCTTCATAACCACCC+AGG | + | chr6_4:18736575-18736594 | Msa0980490:CDS | 50.0% | |
| GACCAATGCAACCACACTTG+AGG | + | chr6_4:18736876-18736895 | Msa0980490:intron | 50.0% | |
| CGACATTGCAACCTCAAGTG+TGG | - | chr6_4:18736890-18736909 | None:intergenic | 50.0% | |
| GAAAGTGGGGTCCACCAAAT+AGG | - | chr6_4:18737340-18737359 | None:intergenic | 50.0% | |
| TGTGGTGAAGGGACAGTGTC+AGG | - | chr6_4:18735306-18735325 | None:intergenic | 55.0% | |
| TGCAACTGCAGTTGTGGCCG+CGG | - | chr6_4:18736939-18736958 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 18735090 | 18738342 | 18735090 | ID=Msa0980490;Name=Msa0980490 |
| chr6_4 | mRNA | 18735090 | 18738342 | 18735090 | ID=Msa0980490-mRNA-1;Parent=Msa0980490;Name=Msa0980490-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.2|1|1|1|5|0|293 |
| chr6_4 | exon | 18735090 | 18735354 | 18735090 | ID=Msa0980490-mRNA-1:exon:5833;Parent=Msa0980490-mRNA-1 |
| chr6_4 | exon | 18736323 | 18736444 | 18736323 | ID=Msa0980490-mRNA-1:exon:5834;Parent=Msa0980490-mRNA-1 |
| chr6_4 | exon | 18736542 | 18736701 | 18736542 | ID=Msa0980490-mRNA-1:exon:5835;Parent=Msa0980490-mRNA-1 |
| chr6_4 | exon | 18737486 | 18737689 | 18737486 | ID=Msa0980490-mRNA-1:exon:5836;Parent=Msa0980490-mRNA-1 |
| chr6_4 | exon | 18738212 | 18738342 | 18738212 | ID=Msa0980490-mRNA-1:exon:5837;Parent=Msa0980490-mRNA-1 |
| chr6_4 | CDS | 18735090 | 18735354 | 18735090 | ID=Msa0980490-mRNA-1:cds;Parent=Msa0980490-mRNA-1 |
| chr6_4 | CDS | 18736323 | 18736444 | 18736323 | ID=Msa0980490-mRNA-1:cds;Parent=Msa0980490-mRNA-1 |
| chr6_4 | CDS | 18736542 | 18736701 | 18736542 | ID=Msa0980490-mRNA-1:cds;Parent=Msa0980490-mRNA-1 |
| chr6_4 | CDS | 18737486 | 18737689 | 18737486 | ID=Msa0980490-mRNA-1:cds;Parent=Msa0980490-mRNA-1 |
| chr6_4 | CDS | 18738212 | 18738342 | 18738212 | ID=Msa0980490-mRNA-1:cds;Parent=Msa0980490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
