Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737020 | XP_003616293.1 | 97.059 | 204 | 6 | 0 | 1 | 204 | 1 | 204 | 3.55e-135 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737020 | sp|Q00423|HMGYA_SOYBN | 61.353 | 207 | 46 | 4 | 1 | 204 | 1 | 176 | 6.90e-61 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737020 | A2Q383 | 97.059 | 204 | 6 | 0 | 1 | 204 | 1 | 204 | 1.70e-135 | 387 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa0737020 | 0.806291 | 8.835113e-50 | -8.615850e-47 |
| Msa0015570 | Msa0737020 | 0.811389 | 7.172912e-51 | -8.615850e-47 |
| Msa0018920 | Msa0737020 | 0.813407 | 2.599558e-51 | -8.615850e-47 |
| Msa0030070 | Msa0737020 | 0.840284 | 9.537440e-58 | -8.615850e-47 |
| Msa0032980 | Msa0737020 | 0.806886 | 6.615634e-50 | -8.615850e-47 |
| Msa0037680 | Msa0737020 | 0.812449 | 4.215088e-51 | -8.615850e-47 |
| Msa0040640 | Msa0737020 | 0.812186 | 4.810950e-51 | -8.615850e-47 |
| Msa0050150 | Msa0737020 | 0.817431 | 3.309340e-52 | -8.615850e-47 |
| Msa0067380 | Msa0737020 | 0.810821 | 9.525895e-51 | -8.615850e-47 |
| Msa0091350 | Msa0737020 | 0.810937 | 8.990585e-51 | -8.615850e-47 |
| Msa0092350 | Msa0737020 | 0.817436 | 3.300601e-52 | -8.615850e-47 |
| Msa0093210 | Msa0737020 | 0.824100 | 9.691043e-54 | -8.615850e-47 |
| Msa0094570 | Msa0737020 | 0.831372 | 1.732667e-55 | -8.615850e-47 |
| Msa0100600 | Msa0737020 | 0.828464 | 8.860096e-55 | -8.615850e-47 |
| Msa0100890 | Msa0737020 | 0.803144 | 4.011098e-49 | -8.615850e-47 |
| Msa0109730 | Msa0737020 | 0.801766 | 7.711545e-49 | -8.615850e-47 |
| Msa0607800 | Msa0737020 | 0.817676 | 2.914520e-52 | -8.615850e-47 |
| Msa0612520 | Msa0737020 | 0.805808 | 1.116120e-49 | -8.615850e-47 |
| Msa0618840 | Msa0737020 | 0.807728 | 4.385665e-50 | -8.615850e-47 |
| Msa0618990 | Msa0737020 | 0.818876 | 1.558787e-52 | -8.615850e-47 |
| Msa0620500 | Msa0737020 | 0.804145 | 2.486157e-49 | -8.615850e-47 |
| Msa0625620 | Msa0737020 | 0.886765 | 2.573084e-72 | -8.615850e-47 |
| Msa0640800 | Msa0737020 | 0.850927 | 1.237141e-60 | -8.615850e-47 |
| Msa0645340 | Msa0737020 | 0.809654 | 1.700531e-50 | -8.615850e-47 |
| Msa0647440 | Msa0737020 | 0.826907 | 2.096563e-54 | -8.615850e-47 |
| Msa0648040 | Msa0737020 | 0.821255 | 4.449584e-53 | -8.615850e-47 |
| Msa0648760 | Msa0737020 | 0.826707 | 2.339796e-54 | -8.615850e-47 |
| Msa0657210 | Msa0737020 | 0.824478 | 7.896559e-54 | -8.615850e-47 |
| Msa0659150 | Msa0737020 | 0.819078 | 1.402972e-52 | -8.615850e-47 |
| Msa0659200 | Msa0737020 | 0.826469 | 2.666328e-54 | -8.615850e-47 |
| Msa0662820 | Msa0737020 | 0.800952 | 1.132225e-48 | -8.615850e-47 |
| Msa0663290 | Msa0737020 | 0.810294 | 1.237872e-50 | -8.615850e-47 |
| Msa0664070 | Msa0737020 | 0.809387 | 1.940928e-50 | -8.615850e-47 |
| Msa0688380 | Msa0737020 | 0.812051 | 5.148665e-51 | -8.615850e-47 |
| Msa0688620 | Msa0737020 | 0.820443 | 6.840387e-53 | -8.615850e-47 |
| Msa0690320 | Msa0737020 | 0.815668 | 8.216979e-52 | -8.615850e-47 |
| Msa0690740 | Msa0737020 | 0.831028 | 2.104928e-55 | -8.615850e-47 |
| Msa0695560 | Msa0737020 | 0.813417 | 2.587251e-51 | -8.615850e-47 |
| Msa0698730 | Msa0737020 | 0.802161 | 6.397346e-49 | -8.615850e-47 |
| Msa0701250 | Msa0737020 | 0.827881 | 1.224673e-54 | -8.615850e-47 |
| Msa0705180 | Msa0737020 | 0.837257 | 5.784464e-57 | -8.615850e-47 |
| Msa0707260 | Msa0737020 | 0.816120 | 6.515089e-52 | -8.615850e-47 |
| Msa0708980 | Msa0737020 | 0.832440 | 9.440931e-56 | -8.615850e-47 |
| Msa0717900 | Msa0737020 | 0.829807 | 4.186158e-55 | -8.615850e-47 |
| Msa0719270 | Msa0737020 | 0.830668 | 2.580075e-55 | -8.615850e-47 |
| Msa0720280 | Msa0737020 | 0.850415 | 1.723579e-60 | -8.615850e-47 |
| Msa0737020 | Msa0740710 | 0.808720 | 2.695871e-50 | -8.615850e-47 |
| Msa0737020 | Msa0745140 | 0.821342 | 4.249725e-53 | -8.615850e-47 |
| Msa0737020 | Msa0749190 | 0.816847 | 4.478486e-52 | -8.615850e-47 |
| Msa0737020 | Msa0750520 | 0.825461 | 4.628357e-54 | -8.615850e-47 |
| Msa0737020 | Msa0776640 | 0.822829 | 1.921751e-53 | -8.615850e-47 |
| Msa0737020 | Msa0778600 | 0.896057 | 5.315082e-76 | -8.615850e-47 |
| Msa0737020 | Msa0803140 | 0.847645 | 1.014395e-59 | -8.615850e-47 |
| Msa0737020 | Msa0815970 | 0.805366 | 1.382293e-49 | -8.615850e-47 |
| Msa0737020 | Msa0816080 | 0.817426 | 3.318626e-52 | -8.615850e-47 |
| Msa0737020 | Msa0825920 | 0.818718 | 1.693348e-52 | -8.615850e-47 |
| Msa0737020 | Msa0831820 | 0.802185 | 6.325198e-49 | -8.615850e-47 |
| Msa0737020 | Msa0837680 | 0.802757 | 4.820606e-49 | -8.615850e-47 |
| Msa0737020 | Msa0840520 | 0.811936 | 5.455462e-51 | -8.615850e-47 |
| Msa0737020 | Msa0841500 | 0.847011 | 1.514675e-59 | -8.615850e-47 |
| Msa0737020 | Msa0865420 | 0.826514 | 2.601357e-54 | -8.615850e-47 |
| Msa0737020 | Msa0866530 | 0.864729 | 9.862010e-65 | -8.615850e-47 |
| Msa0737020 | Msa0879920 | 0.802430 | 5.632270e-49 | -8.615850e-47 |
| Msa0737020 | Msa0880280 | 0.825579 | 4.341518e-54 | -8.615850e-47 |
| Msa0737020 | Msa0900090 | 0.859746 | 3.340786e-63 | -8.615850e-47 |
| Msa0737020 | Msa0909760 | 0.802969 | 4.359384e-49 | -8.615850e-47 |
| Msa0737020 | Msa0930040 | 0.845326 | 4.353931e-59 | -8.615850e-47 |
| Msa0737020 | Msa0945220 | 0.800125 | 1.668831e-48 | -8.615850e-47 |
| Msa0737020 | Msa0945900 | 0.838237 | 3.239883e-57 | -8.615850e-47 |
| Msa0737020 | Msa0965470 | 0.809902 | 1.504238e-50 | -8.615850e-47 |
| Msa0737020 | Msa0972740 | 0.802072 | 6.671563e-49 | -8.615850e-47 |
| Msa0737020 | Msa0978980 | 0.808463 | 3.059696e-50 | -8.615850e-47 |
| Msa0737020 | Msa1000780 | 0.811711 | 6.107266e-51 | -8.615850e-47 |
| Msa0737020 | Msa1008260 | 0.808886 | 2.484394e-50 | -8.615850e-47 |
| Msa0737020 | Msa1008680 | 0.802341 | 5.873618e-49 | -8.615850e-47 |
| Msa0737020 | Msa1027160 | 0.826160 | 3.159931e-54 | -8.615850e-47 |
| Msa0737020 | Msa1033430 | 0.814084 | 1.844326e-51 | -8.615850e-47 |
| Msa0737020 | Msa1041370 | 0.824065 | 9.879093e-54 | -8.615850e-47 |
| Msa0737020 | Msa1060900 | 0.823001 | 1.751504e-53 | -8.615850e-47 |
| Msa0737020 | Msa1071410 | 0.828283 | 9.799965e-55 | -8.615850e-47 |
| Msa0737020 | Msa1073050 | 0.812916 | 3.332295e-51 | -8.615850e-47 |
| Msa0737020 | Msa1076020 | 0.814522 | 1.476030e-51 | -8.615850e-47 |
| Msa0737020 | Msa1078860 | 0.826166 | 3.149164e-54 | -8.615850e-47 |
| Msa0737020 | Msa1078990 | 0.805146 | 1.537016e-49 | -8.615850e-47 |
| Msa0737020 | Msa1081270 | 0.811678 | 6.207106e-51 | -8.615850e-47 |
| Msa0737020 | Msa1106220 | 0.801391 | 9.206566e-49 | -8.615850e-47 |
| Msa0737020 | Msa1144990 | 0.812225 | 4.719892e-51 | -8.615850e-47 |
| Msa0737020 | Msa1148630 | 0.824594 | 7.418529e-54 | -8.615850e-47 |
| Msa0737020 | Msa1154630 | 0.827563 | 1.460011e-54 | -8.615850e-47 |
| Msa0737020 | Msa1163180 | 0.819468 | 1.143025e-52 | -8.615850e-47 |
| Msa0737020 | Msa1168310 | 0.832244 | 1.055878e-55 | -8.615850e-47 |
| Msa0737020 | Msa1169170 | 0.809819 | 1.567306e-50 | -8.615850e-47 |
| Msa0737020 | Msa1169690 | 0.822798 | 1.953173e-53 | -8.615850e-47 |
| Msa0737020 | Msa1190390 | 0.818619 | 1.783773e-52 | -8.615850e-47 |
| Msa0737020 | Msa1191000 | 0.802324 | 5.920873e-49 | -8.615850e-47 |
| Msa0737020 | Msa1201170 | 0.859312 | 4.511492e-63 | -8.615850e-47 |
| Msa0737020 | Msa1205110 | 0.850421 | 1.716301e-60 | -8.615850e-47 |
| Msa0737020 | Msa1206040 | 0.845356 | 4.273725e-59 | -8.615850e-47 |
| Msa0737020 | Msa1215980 | 0.802967 | 4.363064e-49 | -8.615850e-47 |
| Msa0737020 | Msa1215990 | 0.800944 | 1.136180e-48 | -8.615850e-47 |
| Msa0737020 | Msa1219640 | 0.833311 | 5.735472e-56 | -8.615850e-47 |
| Msa0737020 | Msa1219770 | 0.804018 | 2.641609e-49 | -8.615850e-47 |
| Msa0737020 | Msa1221120 | 0.829615 | 4.663013e-55 | -8.615850e-47 |
| Msa0737020 | Msa1265450 | 0.827396 | 1.601065e-54 | -8.615850e-47 |
| Msa0737020 | Msa1266620 | 0.835491 | 1.626815e-56 | -8.615850e-47 |
| Msa0737020 | Msa1267150 | 0.824723 | 6.914390e-54 | -8.615850e-47 |
| Msa0737020 | Msa1267930 | 0.829322 | 5.491987e-55 | -8.615850e-47 |
| Msa0737020 | Msa1277110 | 0.815053 | 1.125916e-51 | -8.615850e-47 |
| Msa0737020 | Msa1294280 | 0.831785 | 1.370661e-55 | -8.615850e-47 |
| Msa0737020 | Msa1294790 | 0.827260 | 1.726041e-54 | -8.615850e-47 |
| Msa0737020 | Msa1297070 | 0.855044 | 8.215667e-62 | -8.615850e-47 |
| Msa0737020 | Msa1301830 | 0.801497 | 8.757915e-49 | -8.615850e-47 |
| Msa0737020 | Msa1305780 | 0.816782 | 4.629455e-52 | -8.615850e-47 |
| Msa0737020 | Msa1308850 | 0.824949 | 6.115548e-54 | -8.615850e-47 |
| Msa0737020 | Msa1315500 | 0.800285 | 1.548631e-48 | -8.615850e-47 |
| Msa0737020 | Msa1328870 | 0.840324 | 9.313430e-58 | -8.615850e-47 |
| Msa0737020 | Msa1333650 | 0.839548 | 1.483220e-57 | -8.615850e-47 |
| Msa0737020 | Msa1339230 | 0.813712 | 2.227366e-51 | -8.615850e-47 |
| Msa0737020 | Msa1342810 | 0.812086 | 5.058941e-51 | -8.615850e-47 |
| Msa0737020 | Msa1372030 | 0.809600 | 1.746257e-50 | -8.615850e-47 |
| Msa0737020 | Msa1381800 | 0.819229 | 1.296047e-52 | -8.615850e-47 |
| Msa0737020 | Msa1387500 | 0.846574 | 1.993443e-59 | -8.615850e-47 |
| Msa0737020 | Msa1393560 | 0.815687 | 8.136241e-52 | -8.615850e-47 |
| Msa0737020 | Msa1399190 | 0.802033 | 6.796610e-49 | -8.615850e-47 |
| Msa0737020 | Msa1406720 | 0.811980 | 5.337197e-51 | -8.615850e-47 |
| Msa0737020 | Msa1410190 | 0.816075 | 6.664781e-52 | -8.615850e-47 |
| Msa0737020 | Msa1424370 | 0.824051 | 9.953624e-54 | -8.615850e-47 |
| Msa0737020 | Msa1426320 | 0.830881 | 2.287812e-55 | -8.615850e-47 |
| Msa0737020 | Msa1428000 | 0.811741 | 6.015596e-51 | -8.615850e-47 |
| Msa0737020 | Msa1428690 | 0.812169 | 4.853113e-51 | -8.615850e-47 |
| Msa0737020 | Msa1435100 | 0.812125 | 4.961930e-51 | -8.615850e-47 |
| Msa0737020 | Msa1436620 | 0.814433 | 1.544460e-51 | -8.615850e-47 |
| Msa0737020 | Msa1439730 | 0.814035 | 1.891298e-51 | -8.615850e-47 |
| Msa0737020 | Msa1442260 | 0.818520 | 1.878429e-52 | -8.615850e-47 |
| Msa0737020 | Msa1444930 | 0.814661 | 1.374970e-51 | -8.615850e-47 |
| Msa0737020 | Msa1457840 | 0.811913 | 5.518293e-51 | -8.615850e-47 |
| Msa0737020 | Msa1461260 | 0.815917 | 7.230952e-52 | -8.615850e-47 |
| Msa0125590 | Msa0737020 | 0.843725 | 1.174334e-58 | -8.615850e-47 |
| Msa0127340 | Msa0737020 | 0.820555 | 6.447003e-53 | -8.615850e-47 |
| Msa0127680 | Msa0737020 | 0.808044 | 3.757653e-50 | -8.615850e-47 |
| Msa0156050 | Msa0737020 | 0.830991 | 2.149172e-55 | -8.615850e-47 |
| Msa0156090 | Msa0737020 | 0.829312 | 5.523367e-55 | -8.615850e-47 |
| Msa0168380 | Msa0737020 | 0.804693 | 1.910898e-49 | -8.615850e-47 |
| Msa0170070 | Msa0737020 | 0.854593 | 1.110452e-61 | -8.615850e-47 |
| Msa0172510 | Msa0737020 | 0.822456 | 2.346261e-53 | -8.615850e-47 |
| Msa0184700 | Msa0737020 | 0.812344 | 4.443872e-51 | -8.615850e-47 |
| Msa0194630 | Msa0737020 | 0.808455 | 3.070769e-50 | -8.615850e-47 |
| Msa0204970 | Msa0737020 | 0.845110 | 4.981510e-59 | -8.615850e-47 |
| Msa0373170 | Msa0737020 | 0.829086 | 6.266954e-55 | -8.615850e-47 |
| Msa0382230 | Msa0737020 | 0.817303 | 3.536403e-52 | -8.615850e-47 |
| Msa0388250 | Msa0737020 | 0.821624 | 3.657222e-53 | -8.615850e-47 |
| Msa0388620 | Msa0737020 | 0.823668 | 1.223503e-53 | -8.615850e-47 |
| Msa0404770 | Msa0737020 | 0.801125 | 1.043595e-48 | -8.615850e-47 |
| Msa0416210 | Msa0737020 | 0.839843 | 1.243303e-57 | -8.615850e-47 |
| Msa0421750 | Msa0737020 | 0.807648 | 4.561138e-50 | -8.615850e-47 |
| Msa0433630 | Msa0737020 | 0.824323 | 8.588693e-54 | -8.615850e-47 |
| Msa0456670 | Msa0737020 | 0.848419 | 6.205366e-60 | -8.615850e-47 |
| Msa0466520 | Msa0737020 | 0.812434 | 4.248947e-51 | -8.615850e-47 |
| Msa0467690 | Msa0737020 | 0.824571 | 7.511908e-54 | -8.615850e-47 |
| Msa0468620 | Msa0737020 | 0.822268 | 2.594695e-53 | -8.615850e-47 |
| Msa0468700 | Msa0737020 | 0.812219 | 4.733844e-51 | -8.615850e-47 |
| Msa0238960 | Msa0737020 | -0.808055 | 3.737026e-50 | -8.615850e-47 |
| Msa0249870 | Msa0737020 | 0.836814 | 7.505258e-57 | -8.615850e-47 |
| Msa0272540 | Msa0737020 | 0.816260 | 6.061117e-52 | -8.615850e-47 |
| Msa0276800 | Msa0737020 | -0.809978 | 1.448053e-50 | -8.615850e-47 |
| Msa0281540 | Msa0737020 | 0.830069 | 3.613108e-55 | -8.615850e-47 |
| Msa0316720 | Msa0737020 | -0.813676 | 2.269400e-51 | -8.615850e-47 |
| Msa0320580 | Msa0737020 | 0.819398 | 1.186042e-52 | -8.615850e-47 |
| Msa0344110 | Msa0737020 | 0.820001 | 8.637751e-53 | -8.615850e-47 |
| Msa0507810 | Msa0737020 | 0.826782 | 2.245096e-54 | -8.615850e-47 |
| Msa0507820 | Msa0737020 | 0.810515 | 1.109487e-50 | -8.615850e-47 |
| Msa0507920 | Msa0737020 | 0.832775 | 7.799653e-56 | -8.615850e-47 |
| Msa0514020 | Msa0737020 | 0.809706 | 1.657386e-50 | -8.615850e-47 |
| Msa0514500 | Msa0737020 | 0.820615 | 6.246460e-53 | -8.615850e-47 |
| Msa0514580 | Msa0737020 | 0.800896 | 1.162494e-48 | -8.615850e-47 |
| Msa0520680 | Msa0737020 | 0.806482 | 8.052136e-50 | -8.615850e-47 |
| Msa0521510 | Msa0737020 | 0.824298 | 8.705473e-54 | -8.615850e-47 |
| Msa0527850 | Msa0737020 | 0.844522 | 7.178166e-59 | -8.615850e-47 |
| Msa0541740 | Msa0737020 | 0.828793 | 7.380547e-55 | -8.615850e-47 |
| Msa0541940 | Msa0737020 | 0.811080 | 8.371599e-51 | -8.615850e-47 |
| Msa0544410 | Msa0737020 | 0.854709 | 1.027169e-61 | -8.615850e-47 |
| Msa0544430 | Msa0737020 | 0.807539 | 4.810882e-50 | -8.615850e-47 |
| Msa0554300 | Msa0737020 | 0.815216 | 1.035530e-51 | -8.615850e-47 |
| Msa0568710 | Msa0737020 | 0.814344 | 1.615853e-51 | -8.615850e-47 |
| Msa0572830 | Msa0737020 | 0.829111 | 6.180014e-55 | -8.615850e-47 |
| Msa0582460 | Msa0737020 | 0.840160 | 1.028056e-57 | -8.615850e-47 |
| Msa0586200 | Msa0737020 | 0.843493 | 1.354827e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737020 | MtrunA17_Chr5g0434691 | 97.059 | 204 | 6 | 0 | 1 | 204 | 1 | 204 | 3.27e-139 | 387 |
| Msa0737020 | MtrunA17_Chr3g0110481 | 53.769 | 199 | 63 | 6 | 1 | 194 | 1 | 175 | 1.11e-47 | 154 |
| Msa0737020 | MtrunA17_Chr8g0392851 | 39.269 | 219 | 82 | 9 | 13 | 192 | 28 | 234 | 1.39e-22 | 94.0 |
| Msa0737020 | MtrunA17_Chr6g0482691 | 43.000 | 100 | 45 | 3 | 13 | 100 | 43 | 142 | 6.08e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737020 | AT1G14900.1 | 44.221 | 199 | 79 | 4 | 10 | 197 | 21 | 198 | 1.75e-41 | 139 |
| Msa0737020 | AT3G18035.1 | 35.772 | 123 | 40 | 1 | 13 | 96 | 66 | 188 | 2.21e-15 | 74.3 |
| Msa0737020 | AT3G18035.2 | 35.772 | 123 | 40 | 1 | 13 | 96 | 66 | 188 | 6.01e-15 | 72.8 |
| Msa0737020 | AT1G48620.1 | 48.387 | 62 | 32 | 0 | 15 | 76 | 78 | 139 | 2.98e-14 | 70.9 |
Find 91 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATTATTATGCATAATTT+TGG | 0.129688 | 5_1:-53866499 | None:intergenic |
| TCAGTCCTTTGAACCTTCTT+TGG | 0.198015 | 5_1:-53865997 | None:intergenic |
| GGGGTCTTTGGAGGTGCATT+TGG | 0.230061 | 5_1:-53865940 | None:intergenic |
| CCTCTCTTTGGTGGTGCATT+TGG | 0.255109 | 5_1:-53865823 | None:intergenic |
| CTTCCACTTGAAGCAGCCTT+AGG | 0.283817 | 5_1:-53865961 | None:intergenic |
| GAAGCAGCCTTAGGGGTCTT+TGG | 0.302690 | 5_1:-53865952 | None:intergenic |
| ATCATAGATGATTGATTAGA+TGG | 0.303766 | 5_1:+53866191 | Msa0737020:exon |
| GATCTGAGGATTGAATTTAA+AGG | 0.320514 | 5_1:-53865073 | None:intergenic |
| GGTCTTCCACGTCCTCTCTT+TGG | 0.323730 | 5_1:-53865835 | None:intergenic |
| CTTAACCAGATGAAGGAAAA+TGG | 0.327311 | 5_1:+53865760 | Msa0737020:CDS |
| GGAGGTGCATTTGGGTCCTT+AGG | 0.329564 | 5_1:-53865931 | None:intergenic |
| GGGTCTTTGGAGGTGCATTT+GGG | 0.338062 | 5_1:-53865939 | None:intergenic |
| TTTGGTGGTGCATTTGGATC+AGG | 0.346536 | 5_1:-53865817 | None:intergenic |
| GCCAATGGATCCTTTGGCTT+TGG | 0.350044 | 5_1:-53865859 | None:intergenic |
| AGAACAATTGAATGGCCTTC+TGG | 0.359176 | 5_1:-53865727 | None:intergenic |
| AATGGATCCTTTGGCTTTGG+TGG | 0.367305 | 5_1:-53865856 | None:intergenic |
| GTCAAACATGACAGTGACTT+TGG | 0.368090 | 5_1:+53866400 | Msa0737020:three_prime_UTR |
| TTCCACTTGAAGCAGCCTTA+GGG | 0.394198 | 5_1:-53865960 | None:intergenic |
| AACTACATAGAATCAATCTA+TGG | 0.397570 | 5_1:+53865697 | Msa0737020:CDS |
| GACGACCTCTTGGCCTTGGT+GGG | 0.404356 | 5_1:-53865906 | None:intergenic |
| GGTGGAGCCAATGGATCCTT+TGG | 0.422272 | 5_1:-53865865 | None:intergenic |
| GGAGGACGACCTCTTGGCCT+TGG | 0.423053 | 5_1:-53865910 | None:intergenic |
| TTCAGATGAACACAAGATAT+AGG | 0.426044 | 5_1:+53864981 | None:intergenic |
| CTTCCCCTTCCACTAGTAGT+TGG | 0.429832 | 5_1:-53866120 | None:intergenic |
| GATGATTTGTTTGAACCATT+TGG | 0.430370 | 5_1:-53865667 | None:intergenic |
| GGACGACCTCTTGGCCTTGG+TGG | 0.430385 | 5_1:-53865907 | None:intergenic |
| GACAGAACAGCAGCTGGTGG+TGG | 0.460682 | 5_1:-53865883 | None:intergenic |
| ACTACTAGTGGAAGGGGAAG+GGG | 0.460928 | 5_1:+53866123 | Msa0737020:CDS |
| TAGTCTAAGAAGAGACTTGT+TGG | 0.463890 | 5_1:+53866362 | Msa0737020:three_prime_UTR |
| TCCTTAGGAGGACGACCTCT+TGG | 0.465433 | 5_1:-53865916 | None:intergenic |
| TCAAACATGACAGTGACTTT+GGG | 0.469100 | 5_1:+53866401 | Msa0737020:three_prime_UTR |
| GTCATCTGAGGCTTAACCTT+AGG | 0.479453 | 5_1:-53866153 | None:intergenic |
| AACTACTAGTGGAAGGGGAA+GGG | 0.479852 | 5_1:+53866122 | Msa0737020:CDS |
| TGTGAATTTACCTCAGGGTA+TGG | 0.486285 | 5_1:-53865254 | None:intergenic |
| GATGAACACAAGATATAGGT+TGG | 0.492453 | 5_1:+53864985 | None:intergenic |
| AGTCTAAGAAGAGACTTGTT+GGG | 0.507234 | 5_1:+53866363 | Msa0737020:three_prime_UTR |
| GCAGCCTTAGGGGTCTTTGG+AGG | 0.511892 | 5_1:-53865949 | None:intergenic |
| CTTCCACGTCCTCTCTTTGG+TGG | 0.517078 | 5_1:-53865832 | None:intergenic |
| GATTTGCAAGAACAATTGAA+TGG | 0.519543 | 5_1:-53865735 | None:intergenic |
| GCAGCTGGTGGTGGAGCCAA+TGG | 0.520984 | 5_1:-53865874 | None:intergenic |
| ACCCCTAAGGCTGCTTCAAG+TGG | 0.525704 | 5_1:+53865958 | Msa0737020:CDS |
| GGGAAGGGGTAGGCCTCCTA+AGG | 0.528357 | 5_1:+53866137 | Msa0737020:CDS |
| GTAGATGATTATGAAGGCAC+TGG | 0.529915 | 5_1:+53865630 | Msa0737020:intron |
| AAGGCTGCTTCAAGTGGAAG+AGG | 0.531029 | 5_1:+53865964 | Msa0737020:CDS |
| GCCAAGAGGTCGTCCTCCTA+AGG | 0.534326 | 5_1:+53865915 | Msa0737020:CDS |
| TCCACTTGAAGCAGCCTTAG+GGG | 0.536454 | 5_1:-53865959 | None:intergenic |
| ATCTGAGGCTTAACCTTAGG+AGG | 0.537376 | 5_1:-53866150 | None:intergenic |
| ATGAACACAAGATATAGGTT+GGG | 0.537497 | 5_1:+53864986 | None:intergenic |
| ACCAAAGCCAAAGGATCCAT+TGG | 0.542885 | 5_1:+53865858 | Msa0737020:CDS |
| GCTTCAAGTGGAAGAGGAAG+GGG | 0.550156 | 5_1:+53865970 | Msa0737020:CDS |
| GGTGGGGACAGAACAGCAGC+TGG | 0.550403 | 5_1:-53865889 | None:intergenic |
| TGCTTCAAGTGGAAGAGGAA+GGG | 0.550902 | 5_1:+53865969 | Msa0737020:CDS |
| AGGAAGGGGTAGGCCAAAGA+AGG | 0.551487 | 5_1:+53865984 | Msa0737020:CDS |
| CAACTACTAGTGGAAGGGGA+AGG | 0.556781 | 5_1:+53866121 | Msa0737020:CDS |
| CCAGCACCATCTCCACCACT+TGG | 0.561242 | 5_1:-53866033 | None:intergenic |
| GGGTATGGAGGAAGTGAAAG+AGG | 0.561822 | 5_1:-53865239 | None:intergenic |
| CTGCTTCAAGTGGAAGAGGA+AGG | 0.565034 | 5_1:+53865968 | Msa0737020:CDS |
| AGCTTCAATGGCTACTCAAG+AGG | 0.565718 | 5_1:+53865208 | Msa0737020:exon |
| GTGTTGTCAAGATCTTACTT+TGG | 0.566186 | 5_1:+53866461 | Msa0737020:three_prime_UTR |
| AAATCACCTTAACCAGATGA+AGG | 0.568245 | 5_1:+53865753 | Msa0737020:CDS |
| GGTGCATTTGGGTCCTTAGG+AGG | 0.569652 | 5_1:-53865928 | None:intergenic |
| TTTGTAAAATCTCCATGTAG+TGG | 0.570739 | 5_1:+53866333 | Msa0737020:three_prime_UTR |
| GAAGCACTGAATGAACCAAA+TGG | 0.572522 | 5_1:+53865652 | Msa0737020:CDS |
| GTAGTGATTAAATGTAGAAG+TGG | 0.573838 | 5_1:+53866245 | Msa0737020:three_prime_UTR |
| CTGTTCCAACTACTAGTGGA+AGG | 0.576494 | 5_1:+53866115 | Msa0737020:CDS |
| CTGCTGTTCTGTCCCCACCA+AGG | 0.579342 | 5_1:+53865893 | Msa0737020:CDS |
| TAGTGATTAAATGTAGAAGT+GGG | 0.585673 | 5_1:+53866246 | Msa0737020:three_prime_UTR |
| GTTCCAACTACTAGTGGAAG+GGG | 0.585748 | 5_1:+53866117 | Msa0737020:CDS |
| AGACTAAACTAACCACTACA+TGG | 0.595678 | 5_1:-53866345 | None:intergenic |
| TCAAATCCAAGTGGTGGAGA+TGG | 0.596389 | 5_1:+53866027 | Msa0737020:CDS |
| GTTGCTGTTCCAACTACTAG+TGG | 0.598369 | 5_1:+53866111 | Msa0737020:CDS |
| ACGACCTCTTGGCCTTGGTG+GGG | 0.598499 | 5_1:-53865905 | None:intergenic |
| GCACCACCAAAGAGAGGACG+TGG | 0.602504 | 5_1:+53865829 | Msa0737020:CDS |
| CCAAGTGGTGGAGATGGTGC+TGG | 0.603694 | 5_1:+53866033 | Msa0737020:CDS |
| AATGTTTCAAATCCAAGTGG+TGG | 0.604254 | 5_1:+53866021 | Msa0737020:CDS |
| GGGGACAGAACAGCAGCTGG+TGG | 0.609403 | 5_1:-53865886 | None:intergenic |
| TGTTCCAACTACTAGTGGAA+GGG | 0.611701 | 5_1:+53866116 | Msa0737020:CDS |
| TGCACCTCCAAAGACCCCTA+AGG | 0.614452 | 5_1:+53865945 | Msa0737020:CDS |
| ATCTATGGTGAATTACCAGA+AGG | 0.621839 | 5_1:+53865712 | Msa0737020:CDS |
| GTAGGCCAAAGAAGGTTCAA+AGG | 0.622028 | 5_1:+53865992 | Msa0737020:CDS |
| ACACTCACTTCAGTCATCTG+AGG | 0.623459 | 5_1:-53866165 | None:intergenic |
| TGGAAGACCACCAAAGCCAA+AGG | 0.624315 | 5_1:+53865849 | Msa0737020:CDS |
| ATTAAATGTAGAAGTGGGTG+TGG | 0.625542 | 5_1:+53866251 | Msa0737020:three_prime_UTR |
| GAATTTACCTCAGGGTATGG+AGG | 0.638966 | 5_1:-53865251 | None:intergenic |
| CCAAATGCACCACCAAAGAG+AGG | 0.648545 | 5_1:+53865823 | Msa0737020:CDS |
| CTAGTGGAAGGGGAAGGGGT+AGG | 0.654025 | 5_1:+53866127 | Msa0737020:CDS |
| CTGTCCCCACCAAGGCCAAG+AGG | 0.676490 | 5_1:+53865901 | Msa0737020:CDS |
| TTCACTTCCTCCATACCCTG+AGG | 0.676529 | 5_1:+53865244 | Msa0737020:CDS |
| GAGAATGTTTCAAATCCAAG+TGG | 0.689463 | 5_1:+53866018 | Msa0737020:CDS |
| CAAGTGGAAGAGGAAGGGGT+AGG | 0.697070 | 5_1:+53865974 | Msa0737020:CDS |
| TGTGATAGTTGCAAGATCTG+AGG | 0.701586 | 5_1:-53865087 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAAGGAAATTTTTTTTA+GGG | + | chr5_1:53865441-53865460 | Msa0737020:intron | 10.0% |
| !!! | AAATAAGGAAATTTTTTTTA+GGG | + | chr5_1:53865441-53865460 | Msa0737020:intron | 10.0% |
| !! | AAGAAAAATGTATTAAAGAT+TGG | - | chr5_1:53865053-53865072 | None:intergenic | 15.0% |
| !! | TTCTTGAAAAAATAAGAAAA+GGG | - | chr5_1:53865300-53865319 | None:intergenic | 15.0% |
| !! | TTTCTTGAAAAAATAAGAAA+AGG | - | chr5_1:53865301-53865320 | None:intergenic | 15.0% |
| !!! | CAAATAAGGAAATTTTTTTT+AGG | + | chr5_1:53865440-53865459 | Msa0737020:intron | 15.0% |
| !!! | TGAATTATTATGCATAATTT+TGG | - | chr5_1:53866502-53866521 | None:intergenic | 15.0% |
| !! | AAGAAAAATGTATTAAAGAT+TGG | - | chr5_1:53865053-53865072 | None:intergenic | 15.0% |
| !! | TTCTTGAAAAAATAAGAAAA+GGG | - | chr5_1:53865300-53865319 | None:intergenic | 15.0% |
| !! | TTTCTTGAAAAAATAAGAAA+AGG | - | chr5_1:53865301-53865320 | None:intergenic | 15.0% |
| !!! | CAAATAAGGAAATTTTTTTT+AGG | + | chr5_1:53865440-53865459 | Msa0737020:intron | 15.0% |
| !!! | TGAATTATTATGCATAATTT+TGG | - | chr5_1:53866502-53866521 | None:intergenic | 15.0% |
| !! | TCTTGAAAAAATAAGAAAAG+GGG | - | chr5_1:53865299-53865318 | None:intergenic | 20.0% |
| !!! | TTTAACAATTTTTACTCACT+TGG | + | chr5_1:53865369-53865388 | Msa0737020:intron | 20.0% |
| !!! | TTAACAATTTTTACTCACTT+GGG | + | chr5_1:53865370-53865389 | Msa0737020:intron | 20.0% |
| !! | AAATCATTCAACATGTTAAT+GGG | - | chr5_1:53865552-53865571 | None:intergenic | 20.0% |
| !! | AAAATCATTCAACATGTTAA+TGG | - | chr5_1:53865553-53865572 | None:intergenic | 20.0% |
| !!! | ATGCATAATAATTCATTTTG+TGG | + | chr5_1:53866507-53866526 | Msa0737020:three_prime_UTR | 20.0% |
| !!! | AATAATTCATTTTGTGGAAA+AGG | + | chr5_1:53866513-53866532 | Msa0737020:three_prime_UTR | 20.0% |
| !! | TCTTGAAAAAATAAGAAAAG+GGG | - | chr5_1:53865299-53865318 | None:intergenic | 20.0% |
| !!! | TTTAACAATTTTTACTCACT+TGG | + | chr5_1:53865369-53865388 | Msa0737020:intron | 20.0% |
| !!! | TTAACAATTTTTACTCACTT+GGG | + | chr5_1:53865370-53865389 | Msa0737020:intron | 20.0% |
| !! | AAATCATTCAACATGTTAAT+GGG | - | chr5_1:53865552-53865571 | None:intergenic | 20.0% |
| !! | AAAATCATTCAACATGTTAA+TGG | - | chr5_1:53865553-53865572 | None:intergenic | 20.0% |
| !!! | ATGCATAATAATTCATTTTG+TGG | + | chr5_1:53866507-53866526 | Msa0737020:three_prime_UTR | 20.0% |
| !!! | GCTGTTTTTGTAATCAAATA+AGG | + | chr5_1:53865426-53865445 | Msa0737020:intron | 25.0% |
| !!! | TACAAAGACTTTTTTCTGTT+TGG | - | chr5_1:53865483-53865502 | None:intergenic | 25.0% |
| !! | GATTTTGTAGATGATTATGA+AGG | + | chr5_1:53865624-53865643 | Msa0737020:intron | 25.0% |
| ! | AACTACATAGAATCAATCTA+TGG | + | chr5_1:53865697-53865716 | Msa0737020:CDS | 25.0% |
| ! | ATCATAGATGATTGATTAGA+TGG | + | chr5_1:53866191-53866210 | Msa0737020:exon | 25.0% |
| ! | TAGTGATTAAATGTAGAAGT+GGG | + | chr5_1:53866246-53866265 | Msa0737020:three_prime_UTR | 25.0% |
| !!! | GCTGTTTTTGTAATCAAATA+AGG | + | chr5_1:53865426-53865445 | Msa0737020:intron | 25.0% |
| !!! | TACAAAGACTTTTTTCTGTT+TGG | - | chr5_1:53865483-53865502 | None:intergenic | 25.0% |
| !! | GATTTTGTAGATGATTATGA+AGG | + | chr5_1:53865624-53865643 | Msa0737020:intron | 25.0% |
| ! | AACTACATAGAATCAATCTA+TGG | + | chr5_1:53865697-53865716 | Msa0737020:CDS | 25.0% |
| ! | ATCATAGATGATTGATTAGA+TGG | + | chr5_1:53866191-53866210 | Msa0737020:exon | 25.0% |
| ! | TAGTGATTAAATGTAGAAGT+GGG | + | chr5_1:53866246-53866265 | Msa0737020:three_prime_UTR | 25.0% |
| GATCTGAGGATTGAATTTAA+AGG | - | chr5_1:53865076-53865095 | None:intergenic | 30.0% | |
| !! | TCACTATTTTCAAGCTTCAA+TGG | + | chr5_1:53865196-53865215 | Msa0737020:exon | 30.0% |
| ! | TCAAGATTACTATTTGGTGA+GGG | - | chr5_1:53865406-53865425 | None:intergenic | 30.0% |
| AACAGCTCAAGATTACTATT+TGG | - | chr5_1:53865412-53865431 | None:intergenic | 30.0% | |
| ! | GTTGAATGATTTTCTCAACA+TGG | + | chr5_1:53865560-53865579 | Msa0737020:intron | 30.0% |
| !! | GATGATTTGTTTGAACCATT+TGG | - | chr5_1:53865670-53865689 | None:intergenic | 30.0% |
| GATTTGCAAGAACAATTGAA+TGG | - | chr5_1:53865738-53865757 | None:intergenic | 30.0% | |
| AGTTGTTCTTTGCAAAAACA+AGG | - | chr5_1:53865789-53865808 | None:intergenic | 30.0% | |
| GTAGTGATTAAATGTAGAAG+TGG | + | chr5_1:53866245-53866264 | Msa0737020:three_prime_UTR | 30.0% | |
| TTTGTAAAATCTCCATGTAG+TGG | + | chr5_1:53866333-53866352 | Msa0737020:three_prime_UTR | 30.0% | |
| GATCTGAGGATTGAATTTAA+AGG | - | chr5_1:53865076-53865095 | None:intergenic | 30.0% | |
| !! | TCACTATTTTCAAGCTTCAA+TGG | + | chr5_1:53865196-53865215 | Msa0737020:exon | 30.0% |
| ! | TCAAGATTACTATTTGGTGA+GGG | - | chr5_1:53865406-53865425 | None:intergenic | 30.0% |
| AACAGCTCAAGATTACTATT+TGG | - | chr5_1:53865412-53865431 | None:intergenic | 30.0% | |
| ! | GTTGAATGATTTTCTCAACA+TGG | + | chr5_1:53865560-53865579 | Msa0737020:intron | 30.0% |
| !! | GATGATTTGTTTGAACCATT+TGG | - | chr5_1:53865670-53865689 | None:intergenic | 30.0% |
| GATTTGCAAGAACAATTGAA+TGG | - | chr5_1:53865738-53865757 | None:intergenic | 30.0% | |
| AGTTGTTCTTTGCAAAAACA+AGG | - | chr5_1:53865789-53865808 | None:intergenic | 30.0% | |
| GTAGTGATTAAATGTAGAAG+TGG | + | chr5_1:53866245-53866264 | Msa0737020:three_prime_UTR | 30.0% | |
| TTTGTAAAATCTCCATGTAG+TGG | + | chr5_1:53866333-53866352 | Msa0737020:three_prime_UTR | 30.0% | |
| ! | AGATATAGGTTGGGAAAAAG+AGG | + | chr5_1:53864995-53865014 | Msa0737020:five_prime_UTR | 35.0% |
| ! | AAGGGGTGTATGTTGAATTA+GGG | - | chr5_1:53865282-53865301 | None:intergenic | 35.0% |
| ! | AAAGGGGTGTATGTTGAATT+AGG | - | chr5_1:53865283-53865302 | None:intergenic | 35.0% |
| ! | CAAGATTACTATTTGGTGAG+GGG | - | chr5_1:53865405-53865424 | None:intergenic | 35.0% |
| ! | CTCAAGATTACTATTTGGTG+AGG | - | chr5_1:53865407-53865426 | None:intergenic | 35.0% |
| ATCTATGGTGAATTACCAGA+AGG | + | chr5_1:53865712-53865731 | Msa0737020:CDS | 35.0% | |
| AAATCACCTTAACCAGATGA+AGG | + | chr5_1:53865753-53865772 | Msa0737020:CDS | 35.0% | |
| ! | CATTTTCCTTCATCTGGTTA+AGG | - | chr5_1:53865762-53865781 | None:intergenic | 35.0% |
| CTTAACCAGATGAAGGAAAA+TGG | + | chr5_1:53865760-53865779 | Msa0737020:CDS | 35.0% | |
| GAGAATGTTTCAAATCCAAG+TGG | + | chr5_1:53866018-53866037 | Msa0737020:CDS | 35.0% | |
| AATGTTTCAAATCCAAGTGG+TGG | + | chr5_1:53866021-53866040 | Msa0737020:CDS | 35.0% | |
| ATTAAATGTAGAAGTGGGTG+TGG | + | chr5_1:53866251-53866270 | Msa0737020:three_prime_UTR | 35.0% | |
| AGACTAAACTAACCACTACA+TGG | - | chr5_1:53866348-53866367 | None:intergenic | 35.0% | |
| TAGTCTAAGAAGAGACTTGT+TGG | + | chr5_1:53866362-53866381 | Msa0737020:three_prime_UTR | 35.0% | |
| ! | AGTCTAAGAAGAGACTTGTT+GGG | + | chr5_1:53866363-53866382 | Msa0737020:three_prime_UTR | 35.0% |
| TCAAACATGACAGTGACTTT+GGG | + | chr5_1:53866401-53866420 | Msa0737020:three_prime_UTR | 35.0% | |
| GTGTTGTCAAGATCTTACTT+TGG | + | chr5_1:53866461-53866480 | Msa0737020:three_prime_UTR | 35.0% | |
| ! | AGATATAGGTTGGGAAAAAG+AGG | + | chr5_1:53864995-53865014 | Msa0737020:five_prime_UTR | 35.0% |
| ! | AAGGGGTGTATGTTGAATTA+GGG | - | chr5_1:53865282-53865301 | None:intergenic | 35.0% |
| ! | AAAGGGGTGTATGTTGAATT+AGG | - | chr5_1:53865283-53865302 | None:intergenic | 35.0% |
| ! | CAAGATTACTATTTGGTGAG+GGG | - | chr5_1:53865405-53865424 | None:intergenic | 35.0% |
| ! | CTCAAGATTACTATTTGGTG+AGG | - | chr5_1:53865407-53865426 | None:intergenic | 35.0% |
| ATCTATGGTGAATTACCAGA+AGG | + | chr5_1:53865712-53865731 | Msa0737020:CDS | 35.0% | |
| AAATCACCTTAACCAGATGA+AGG | + | chr5_1:53865753-53865772 | Msa0737020:CDS | 35.0% | |
| ! | CATTTTCCTTCATCTGGTTA+AGG | - | chr5_1:53865762-53865781 | None:intergenic | 35.0% |
| CTTAACCAGATGAAGGAAAA+TGG | + | chr5_1:53865760-53865779 | Msa0737020:CDS | 35.0% | |
| GAGAATGTTTCAAATCCAAG+TGG | + | chr5_1:53866018-53866037 | Msa0737020:CDS | 35.0% | |
| AATGTTTCAAATCCAAGTGG+TGG | + | chr5_1:53866021-53866040 | Msa0737020:CDS | 35.0% | |
| ATTAAATGTAGAAGTGGGTG+TGG | + | chr5_1:53866251-53866270 | Msa0737020:three_prime_UTR | 35.0% | |
| AGACTAAACTAACCACTACA+TGG | - | chr5_1:53866348-53866367 | None:intergenic | 35.0% | |
| TAGTCTAAGAAGAGACTTGT+TGG | + | chr5_1:53866362-53866381 | Msa0737020:three_prime_UTR | 35.0% | |
| ! | AGTCTAAGAAGAGACTTGTT+GGG | + | chr5_1:53866363-53866382 | Msa0737020:three_prime_UTR | 35.0% |
| TCAAACATGACAGTGACTTT+GGG | + | chr5_1:53866401-53866420 | Msa0737020:three_prime_UTR | 35.0% | |
| GTGTTGTCAAGATCTTACTT+TGG | + | chr5_1:53866461-53866480 | Msa0737020:three_prime_UTR | 35.0% | |
| TGTGATAGTTGCAAGATCTG+AGG | - | chr5_1:53865090-53865109 | None:intergenic | 40.0% | |
| TGTGAATTTACCTCAGGGTA+TGG | - | chr5_1:53865257-53865276 | None:intergenic | 40.0% | |
| ! | AGGGGTGTATGTTGAATTAG+GGG | - | chr5_1:53865281-53865300 | None:intergenic | 40.0% |
| ! | GTAGATGATTATGAAGGCAC+TGG | + | chr5_1:53865630-53865649 | Msa0737020:intron | 40.0% |
| !! | GAAGCACTGAATGAACCAAA+TGG | + | chr5_1:53865652-53865671 | Msa0737020:CDS | 40.0% |
| AGAACAATTGAATGGCCTTC+TGG | - | chr5_1:53865730-53865749 | None:intergenic | 40.0% | |
| TCAGTCCTTTGAACCTTCTT+TGG | - | chr5_1:53866000-53866019 | None:intergenic | 40.0% | |
| TGTTCCAACTACTAGTGGAA+GGG | + | chr5_1:53866116-53866135 | Msa0737020:CDS | 40.0% | |
| GTCAAACATGACAGTGACTT+TGG | + | chr5_1:53866400-53866419 | Msa0737020:three_prime_UTR | 40.0% | |
| TGTGATAGTTGCAAGATCTG+AGG | - | chr5_1:53865090-53865109 | None:intergenic | 40.0% | |
| TGTGAATTTACCTCAGGGTA+TGG | - | chr5_1:53865257-53865276 | None:intergenic | 40.0% | |
| ! | AGGGGTGTATGTTGAATTAG+GGG | - | chr5_1:53865281-53865300 | None:intergenic | 40.0% |
| ! | GTAGATGATTATGAAGGCAC+TGG | + | chr5_1:53865630-53865649 | Msa0737020:intron | 40.0% |
| !! | GAAGCACTGAATGAACCAAA+TGG | + | chr5_1:53865652-53865671 | Msa0737020:CDS | 40.0% |
| AGAACAATTGAATGGCCTTC+TGG | - | chr5_1:53865730-53865749 | None:intergenic | 40.0% | |
| TCAGTCCTTTGAACCTTCTT+TGG | - | chr5_1:53866000-53866019 | None:intergenic | 40.0% | |
| TGTTCCAACTACTAGTGGAA+GGG | + | chr5_1:53866116-53866135 | Msa0737020:CDS | 40.0% | |
| GTCAAACATGACAGTGACTT+TGG | + | chr5_1:53866400-53866419 | Msa0737020:three_prime_UTR | 40.0% | |
| AGCTTCAATGGCTACTCAAG+AGG | + | chr5_1:53865208-53865227 | Msa0737020:exon | 45.0% | |
| GAATTTACCTCAGGGTATGG+AGG | - | chr5_1:53865254-53865273 | None:intergenic | 45.0% | |
| GGGGTGTATGTTGAATTAGG+GGG | - | chr5_1:53865280-53865299 | None:intergenic | 45.0% | |
| ! | GGTCACCATTTTCCTTCATC+TGG | - | chr5_1:53865768-53865787 | None:intergenic | 45.0% |
| !! | TTTGGTGGTGCATTTGGATC+AGG | - | chr5_1:53865820-53865839 | None:intergenic | 45.0% |
| !! | AATGGATCCTTTGGCTTTGG+TGG | - | chr5_1:53865859-53865878 | None:intergenic | 45.0% |
| ACCAAAGCCAAAGGATCCAT+TGG | + | chr5_1:53865858-53865877 | Msa0737020:CDS | 45.0% | |
| TTCCACTTGAAGCAGCCTTA+GGG | - | chr5_1:53865963-53865982 | None:intergenic | 45.0% | |
| TGCTTCAAGTGGAAGAGGAA+GGG | + | chr5_1:53865969-53865988 | Msa0737020:CDS | 45.0% | |
| GTAGGCCAAAGAAGGTTCAA+AGG | + | chr5_1:53865992-53866011 | Msa0737020:CDS | 45.0% | |
| ! | TCAAATCCAAGTGGTGGAGA+TGG | + | chr5_1:53866027-53866046 | Msa0737020:CDS | 45.0% |
| ! | GTTGCTGTTCCAACTACTAG+TGG | + | chr5_1:53866111-53866130 | Msa0737020:CDS | 45.0% |
| CTGTTCCAACTACTAGTGGA+AGG | + | chr5_1:53866115-53866134 | Msa0737020:CDS | 45.0% | |
| GTTCCAACTACTAGTGGAAG+GGG | + | chr5_1:53866117-53866136 | Msa0737020:CDS | 45.0% | |
| AACTACTAGTGGAAGGGGAA+GGG | + | chr5_1:53866122-53866141 | Msa0737020:CDS | 45.0% | |
| ! | ATCTGAGGCTTAACCTTAGG+AGG | - | chr5_1:53866153-53866172 | None:intergenic | 45.0% |
| ! | GTCATCTGAGGCTTAACCTT+AGG | - | chr5_1:53866156-53866175 | None:intergenic | 45.0% |
| ACACTCACTTCAGTCATCTG+AGG | - | chr5_1:53866168-53866187 | None:intergenic | 45.0% | |
| AGCTTCAATGGCTACTCAAG+AGG | + | chr5_1:53865208-53865227 | Msa0737020:exon | 45.0% | |
| GAATTTACCTCAGGGTATGG+AGG | - | chr5_1:53865254-53865273 | None:intergenic | 45.0% | |
| GGGGTGTATGTTGAATTAGG+GGG | - | chr5_1:53865280-53865299 | None:intergenic | 45.0% | |
| ! | GGTCACCATTTTCCTTCATC+TGG | - | chr5_1:53865768-53865787 | None:intergenic | 45.0% |
| !! | TTTGGTGGTGCATTTGGATC+AGG | - | chr5_1:53865820-53865839 | None:intergenic | 45.0% |
| !! | AATGGATCCTTTGGCTTTGG+TGG | - | chr5_1:53865859-53865878 | None:intergenic | 45.0% |
| ACCAAAGCCAAAGGATCCAT+TGG | + | chr5_1:53865858-53865877 | Msa0737020:CDS | 45.0% | |
| TTCCACTTGAAGCAGCCTTA+GGG | - | chr5_1:53865963-53865982 | None:intergenic | 45.0% | |
| TGCTTCAAGTGGAAGAGGAA+GGG | + | chr5_1:53865969-53865988 | Msa0737020:CDS | 45.0% | |
| GTAGGCCAAAGAAGGTTCAA+AGG | + | chr5_1:53865992-53866011 | Msa0737020:CDS | 45.0% | |
| ! | TCAAATCCAAGTGGTGGAGA+TGG | + | chr5_1:53866027-53866046 | Msa0737020:CDS | 45.0% |
| ! | GTTGCTGTTCCAACTACTAG+TGG | + | chr5_1:53866111-53866130 | Msa0737020:CDS | 45.0% |
| CTGTTCCAACTACTAGTGGA+AGG | + | chr5_1:53866115-53866134 | Msa0737020:CDS | 45.0% | |
| GTTCCAACTACTAGTGGAAG+GGG | + | chr5_1:53866117-53866136 | Msa0737020:CDS | 45.0% | |
| AACTACTAGTGGAAGGGGAA+GGG | + | chr5_1:53866122-53866141 | Msa0737020:CDS | 45.0% | |
| ! | ATCTGAGGCTTAACCTTAGG+AGG | - | chr5_1:53866153-53866172 | None:intergenic | 45.0% |
| ! | GTCATCTGAGGCTTAACCTT+AGG | - | chr5_1:53866156-53866175 | None:intergenic | 45.0% |
| ACACTCACTTCAGTCATCTG+AGG | - | chr5_1:53866168-53866187 | None:intergenic | 45.0% | |
| GGGTATGGAGGAAGTGAAAG+AGG | - | chr5_1:53865242-53865261 | None:intergenic | 50.0% | |
| TTCACTTCCTCCATACCCTG+AGG | + | chr5_1:53865244-53865263 | Msa0737020:CDS | 50.0% | |
| ! | GGGGGTGTGAATTTACCTCA+GGG | - | chr5_1:53865262-53865281 | None:intergenic | 50.0% |
| ! | AGGGGGTGTGAATTTACCTC+AGG | - | chr5_1:53865263-53865282 | None:intergenic | 50.0% |
| !! | CCTCTCTTTGGTGGTGCATT+TGG | - | chr5_1:53865826-53865845 | None:intergenic | 50.0% |
| CCAAATGCACCACCAAAGAG+AGG | + | chr5_1:53865823-53865842 | Msa0737020:CDS | 50.0% | |
| TGGAAGACCACCAAAGCCAA+AGG | + | chr5_1:53865849-53865868 | Msa0737020:CDS | 50.0% | |
| ! | GCCAATGGATCCTTTGGCTT+TGG | - | chr5_1:53865862-53865881 | None:intergenic | 50.0% |
| ! | GGGTCTTTGGAGGTGCATTT+GGG | - | chr5_1:53865942-53865961 | None:intergenic | 50.0% |
| TCCACTTGAAGCAGCCTTAG+GGG | - | chr5_1:53865962-53865981 | None:intergenic | 50.0% | |
| CTTCCACTTGAAGCAGCCTT+AGG | - | chr5_1:53865964-53865983 | None:intergenic | 50.0% | |
| AAGGCTGCTTCAAGTGGAAG+AGG | + | chr5_1:53865964-53865983 | Msa0737020:CDS | 50.0% | |
| CTGCTTCAAGTGGAAGAGGA+AGG | + | chr5_1:53865968-53865987 | Msa0737020:CDS | 50.0% | |
| GCTTCAAGTGGAAGAGGAAG+GGG | + | chr5_1:53865970-53865989 | Msa0737020:CDS | 50.0% | |
| CTTCCCCTTCCACTAGTAGT+TGG | - | chr5_1:53866123-53866142 | None:intergenic | 50.0% | |
| CAACTACTAGTGGAAGGGGA+AGG | + | chr5_1:53866121-53866140 | Msa0737020:CDS | 50.0% | |
| ACTACTAGTGGAAGGGGAAG+GGG | + | chr5_1:53866123-53866142 | Msa0737020:CDS | 50.0% | |
| GGGTATGGAGGAAGTGAAAG+AGG | - | chr5_1:53865242-53865261 | None:intergenic | 50.0% | |
| TTCACTTCCTCCATACCCTG+AGG | + | chr5_1:53865244-53865263 | Msa0737020:CDS | 50.0% | |
| ! | GGGGGTGTGAATTTACCTCA+GGG | - | chr5_1:53865262-53865281 | None:intergenic | 50.0% |
| ! | AGGGGGTGTGAATTTACCTC+AGG | - | chr5_1:53865263-53865282 | None:intergenic | 50.0% |
| !! | CCTCTCTTTGGTGGTGCATT+TGG | - | chr5_1:53865826-53865845 | None:intergenic | 50.0% |
| CCAAATGCACCACCAAAGAG+AGG | + | chr5_1:53865823-53865842 | Msa0737020:CDS | 50.0% | |
| TGGAAGACCACCAAAGCCAA+AGG | + | chr5_1:53865849-53865868 | Msa0737020:CDS | 50.0% | |
| ! | GCCAATGGATCCTTTGGCTT+TGG | - | chr5_1:53865862-53865881 | None:intergenic | 50.0% |
| ! | GGGTCTTTGGAGGTGCATTT+GGG | - | chr5_1:53865942-53865961 | None:intergenic | 50.0% |
| TCCACTTGAAGCAGCCTTAG+GGG | - | chr5_1:53865962-53865981 | None:intergenic | 50.0% | |
| CTTCCACTTGAAGCAGCCTT+AGG | - | chr5_1:53865964-53865983 | None:intergenic | 50.0% | |
| AAGGCTGCTTCAAGTGGAAG+AGG | + | chr5_1:53865964-53865983 | Msa0737020:CDS | 50.0% | |
| CTGCTTCAAGTGGAAGAGGA+AGG | + | chr5_1:53865968-53865987 | Msa0737020:CDS | 50.0% | |
| GCTTCAAGTGGAAGAGGAAG+GGG | + | chr5_1:53865970-53865989 | Msa0737020:CDS | 50.0% | |
| CTTCCCCTTCCACTAGTAGT+TGG | - | chr5_1:53866123-53866142 | None:intergenic | 50.0% | |
| CAACTACTAGTGGAAGGGGA+AGG | + | chr5_1:53866121-53866140 | Msa0737020:CDS | 50.0% | |
| ACTACTAGTGGAAGGGGAAG+GGG | + | chr5_1:53866123-53866142 | Msa0737020:CDS | 50.0% | |
| CTTCCACGTCCTCTCTTTGG+TGG | - | chr5_1:53865835-53865854 | None:intergenic | 55.0% | |
| GGTCTTCCACGTCCTCTCTT+TGG | - | chr5_1:53865838-53865857 | None:intergenic | 55.0% | |
| GGTGGAGCCAATGGATCCTT+TGG | - | chr5_1:53865868-53865887 | None:intergenic | 55.0% | |
| TCCTTAGGAGGACGACCTCT+TGG | - | chr5_1:53865919-53865938 | None:intergenic | 55.0% | |
| GGTGCATTTGGGTCCTTAGG+AGG | - | chr5_1:53865931-53865950 | None:intergenic | 55.0% | |
| ! | GGAGGTGCATTTGGGTCCTT+AGG | - | chr5_1:53865934-53865953 | None:intergenic | 55.0% |
| ! | GGGGTCTTTGGAGGTGCATT+TGG | - | chr5_1:53865943-53865962 | None:intergenic | 55.0% |
| TGCACCTCCAAAGACCCCTA+AGG | + | chr5_1:53865945-53865964 | Msa0737020:CDS | 55.0% | |
| GAAGCAGCCTTAGGGGTCTT+TGG | - | chr5_1:53865955-53865974 | None:intergenic | 55.0% | |
| ACCCCTAAGGCTGCTTCAAG+TGG | + | chr5_1:53865958-53865977 | Msa0737020:CDS | 55.0% | |
| CAAGTGGAAGAGGAAGGGGT+AGG | + | chr5_1:53865974-53865993 | Msa0737020:CDS | 55.0% | |
| AGGAAGGGGTAGGCCAAAGA+AGG | + | chr5_1:53865984-53866003 | Msa0737020:CDS | 55.0% | |
| CTTCCACGTCCTCTCTTTGG+TGG | - | chr5_1:53865835-53865854 | None:intergenic | 55.0% | |
| GGTCTTCCACGTCCTCTCTT+TGG | - | chr5_1:53865838-53865857 | None:intergenic | 55.0% | |
| GGTGGAGCCAATGGATCCTT+TGG | - | chr5_1:53865868-53865887 | None:intergenic | 55.0% | |
| TCCTTAGGAGGACGACCTCT+TGG | - | chr5_1:53865919-53865938 | None:intergenic | 55.0% | |
| GGTGCATTTGGGTCCTTAGG+AGG | - | chr5_1:53865931-53865950 | None:intergenic | 55.0% | |
| ! | GGAGGTGCATTTGGGTCCTT+AGG | - | chr5_1:53865934-53865953 | None:intergenic | 55.0% |
| ! | GGGGTCTTTGGAGGTGCATT+TGG | - | chr5_1:53865943-53865962 | None:intergenic | 55.0% |
| TGCACCTCCAAAGACCCCTA+AGG | + | chr5_1:53865945-53865964 | Msa0737020:CDS | 55.0% | |
| GAAGCAGCCTTAGGGGTCTT+TGG | - | chr5_1:53865955-53865974 | None:intergenic | 55.0% | |
| ACCCCTAAGGCTGCTTCAAG+TGG | + | chr5_1:53865958-53865977 | Msa0737020:CDS | 55.0% | |
| CAAGTGGAAGAGGAAGGGGT+AGG | + | chr5_1:53865974-53865993 | Msa0737020:CDS | 55.0% | |
| AGGAAGGGGTAGGCCAAAGA+AGG | + | chr5_1:53865984-53866003 | Msa0737020:CDS | 55.0% | |
| GCACCACCAAAGAGAGGACG+TGG | + | chr5_1:53865829-53865848 | Msa0737020:CDS | 60.0% | |
| GACAGAACAGCAGCTGGTGG+TGG | - | chr5_1:53865886-53865905 | None:intergenic | 60.0% | |
| CTGCTGTTCTGTCCCCACCA+AGG | + | chr5_1:53865893-53865912 | Msa0737020:CDS | 60.0% | |
| !! | ACGACCTCTTGGCCTTGGTG+GGG | - | chr5_1:53865908-53865927 | None:intergenic | 60.0% |
| !! | GACGACCTCTTGGCCTTGGT+GGG | - | chr5_1:53865909-53865928 | None:intergenic | 60.0% |
| GCCAAGAGGTCGTCCTCCTA+AGG | + | chr5_1:53865915-53865934 | Msa0737020:CDS | 60.0% | |
| GCAGCCTTAGGGGTCTTTGG+AGG | - | chr5_1:53865952-53865971 | None:intergenic | 60.0% | |
| CCAGCACCATCTCCACCACT+TGG | - | chr5_1:53866036-53866055 | None:intergenic | 60.0% | |
| ! | CCAAGTGGTGGAGATGGTGC+TGG | + | chr5_1:53866033-53866052 | Msa0737020:CDS | 60.0% |
| CTAGTGGAAGGGGAAGGGGT+AGG | + | chr5_1:53866127-53866146 | Msa0737020:CDS | 60.0% | |
| GCACCACCAAAGAGAGGACG+TGG | + | chr5_1:53865829-53865848 | Msa0737020:CDS | 60.0% | |
| GACAGAACAGCAGCTGGTGG+TGG | - | chr5_1:53865886-53865905 | None:intergenic | 60.0% | |
| CTGCTGTTCTGTCCCCACCA+AGG | + | chr5_1:53865893-53865912 | Msa0737020:CDS | 60.0% | |
| !! | ACGACCTCTTGGCCTTGGTG+GGG | - | chr5_1:53865908-53865927 | None:intergenic | 60.0% |
| !! | GACGACCTCTTGGCCTTGGT+GGG | - | chr5_1:53865909-53865928 | None:intergenic | 60.0% |
| GCCAAGAGGTCGTCCTCCTA+AGG | + | chr5_1:53865915-53865934 | Msa0737020:CDS | 60.0% | |
| GCAGCCTTAGGGGTCTTTGG+AGG | - | chr5_1:53865952-53865971 | None:intergenic | 60.0% | |
| CCAGCACCATCTCCACCACT+TGG | - | chr5_1:53866036-53866055 | None:intergenic | 60.0% | |
| ! | CCAAGTGGTGGAGATGGTGC+TGG | + | chr5_1:53866033-53866052 | Msa0737020:CDS | 60.0% |
| CTAGTGGAAGGGGAAGGGGT+AGG | + | chr5_1:53866127-53866146 | Msa0737020:CDS | 60.0% | |
| !! | GCAGCTGGTGGTGGAGCCAA+TGG | - | chr5_1:53865877-53865896 | None:intergenic | 65.0% |
| GGGGACAGAACAGCAGCTGG+TGG | - | chr5_1:53865889-53865908 | None:intergenic | 65.0% | |
| GGTGGGGACAGAACAGCAGC+TGG | - | chr5_1:53865892-53865911 | None:intergenic | 65.0% | |
| CTGTCCCCACCAAGGCCAAG+AGG | + | chr5_1:53865901-53865920 | Msa0737020:CDS | 65.0% | |
| !! | GGACGACCTCTTGGCCTTGG+TGG | - | chr5_1:53865910-53865929 | None:intergenic | 65.0% |
| GGAGGACGACCTCTTGGCCT+TGG | - | chr5_1:53865913-53865932 | None:intergenic | 65.0% | |
| !! | TGGTGCTGCTGCTGCTGCTG+AGG | + | chr5_1:53866053-53866072 | Msa0737020:CDS | 65.0% |
| GGGAAGGGGTAGGCCTCCTA+AGG | + | chr5_1:53866137-53866156 | Msa0737020:CDS | 65.0% | |
| !! | GCAGCTGGTGGTGGAGCCAA+TGG | - | chr5_1:53865877-53865896 | None:intergenic | 65.0% |
| GGGGACAGAACAGCAGCTGG+TGG | - | chr5_1:53865889-53865908 | None:intergenic | 65.0% | |
| GGTGGGGACAGAACAGCAGC+TGG | - | chr5_1:53865892-53865911 | None:intergenic | 65.0% | |
| CTGTCCCCACCAAGGCCAAG+AGG | + | chr5_1:53865901-53865920 | Msa0737020:CDS | 65.0% | |
| !! | GGACGACCTCTTGGCCTTGG+TGG | - | chr5_1:53865910-53865929 | None:intergenic | 65.0% |
| GGAGGACGACCTCTTGGCCT+TGG | - | chr5_1:53865913-53865932 | None:intergenic | 65.0% | |
| !! | TGGTGCTGCTGCTGCTGCTG+AGG | + | chr5_1:53866053-53866072 | Msa0737020:CDS | 65.0% |
| GGGAAGGGGTAGGCCTCCTA+AGG | + | chr5_1:53866137-53866156 | Msa0737020:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 53864987 | 53866535 | 53864987 | ID=Msa0737020;Name=Msa0737020 |
| chr5_1 | mRNA | 53864987 | 53866535 | 53864987 | ID=Msa0737020-mRNA-1;Parent=Msa0737020;Name=Msa0737020-mRNA-1;_AED=0.00;_eAED=0.00;_QI=228|1|1|1|1|1|2|338|204 |
| chr5_1 | exon | 53864987 | 53865265 | 53864987 | ID=Msa0737020-mRNA-1:exon:15155;Parent=Msa0737020-mRNA-1 |
| chr5_1 | exon | 53865634 | 53866535 | 53865634 | ID=Msa0737020-mRNA-1:exon:15156;Parent=Msa0737020-mRNA-1 |
| chr5_1 | five_prime_UTR | 53864987 | 53865214 | 53864987 | ID=Msa0737020-mRNA-1:five_prime_utr;Parent=Msa0737020-mRNA-1 |
| chr5_1 | CDS | 53865215 | 53865265 | 53865215 | ID=Msa0737020-mRNA-1:cds;Parent=Msa0737020-mRNA-1 |
| chr5_1 | CDS | 53865634 | 53866197 | 53865634 | ID=Msa0737020-mRNA-1:cds;Parent=Msa0737020-mRNA-1 |
| chr5_1 | three_prime_UTR | 53866198 | 53866535 | 53866198 | ID=Msa0737020-mRNA-1:three_prime_utr;Parent=Msa0737020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
