AlfalfaGEDB | Msa0737020

M. sativa cultivar zhongmu-4 / Msa0737020

KEGG: K11275
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:0080050 GO:0097159 GO:1901363 GO:2000014 GO:2000026 GO:2000241
PFAM: PF00538.22

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0737020	XP_003616293.1	97.059	204	6	0	1	204	1	204	3.55e-135	387

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0737020	sp\|Q00423\|HMGYA_SOYBN	61.353	207	46	4	1	204	1	176	6.90e-61	191

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0737020	A2Q383	97.059	204	6	0	1	204	1	204	1.70e-135	387

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006840	Msa0737020	0.806291	8.835113e-50	-8.615850e-47
Msa0015570	Msa0737020	0.811389	7.172912e-51	-8.615850e-47
Msa0018920	Msa0737020	0.813407	2.599558e-51	-8.615850e-47
Msa0030070	Msa0737020	0.840284	9.537440e-58	-8.615850e-47
Msa0032980	Msa0737020	0.806886	6.615634e-50	-8.615850e-47
Msa0037680	Msa0737020	0.812449	4.215088e-51	-8.615850e-47
Msa0040640	Msa0737020	0.812186	4.810950e-51	-8.615850e-47
Msa0050150	Msa0737020	0.817431	3.309340e-52	-8.615850e-47
Msa0067380	Msa0737020	0.810821	9.525895e-51	-8.615850e-47
Msa0091350	Msa0737020	0.810937	8.990585e-51	-8.615850e-47

Showing 1 to 10 of 187 entries

Previous1 2 3 4 5…19Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0737020	MtrunA17_Chr5g0434691	97.059	204	6	0	1	204	1	204	3.27e-139	387
Msa0737020	MtrunA17_Chr3g0110481	53.769	199	63	6	1	194	1	175	1.11e-47	154
Msa0737020	MtrunA17_Chr8g0392851	39.269	219	82	9	13	192	28	234	1.39e-22	94.0
Msa0737020	MtrunA17_Chr6g0482691	43.000	100	45	3	13	100	43	142	6.08e-15	72.8

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0737020	AT1G14900.1	44.221	199	79	4	10	197	21	198	1.75e-41	139
Msa0737020	AT3G18035.1	35.772	123	40	1	13	96	66	188	2.21e-15	74.3
Msa0737020	AT3G18035.2	35.772	123	40	1	13	96	66	188	6.01e-15	72.8
Msa0737020	AT1G48620.1	48.387	62	32	0	15	76	78	139	2.98e-14	70.9

Showing 1 to 4 of 4 entries

Previous1Next

Find 91 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCACCTTAACCAGATGA+AGG	0.568245	5_1:+53865753	Msa0737020:CDS
AACTACATAGAATCAATCTA+TGG	0.397570	5_1:+53865697	Msa0737020:CDS
AACTACTAGTGGAAGGGGAA+GGG	0.479852	5_1:+53866122	Msa0737020:CDS
AAGGCTGCTTCAAGTGGAAG+AGG	0.531029	5_1:+53865964	Msa0737020:CDS
AATGGATCCTTTGGCTTTGG+TGG	0.367305	5_1:-53865856	None:intergenic
AATGTTTCAAATCCAAGTGG+TGG	0.604254	5_1:+53866021	Msa0737020:CDS
ACACTCACTTCAGTCATCTG+AGG	0.623459	5_1:-53866165	None:intergenic
ACCAAAGCCAAAGGATCCAT+TGG	0.542885	5_1:+53865858	Msa0737020:CDS
ACCCCTAAGGCTGCTTCAAG+TGG	0.525704	5_1:+53865958	Msa0737020:CDS
ACGACCTCTTGGCCTTGGTG+GGG	0.598499	5_1:-53865905	None:intergenic

Showing 1 to 10 of 91 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GATCTGAGGATTGAATTTAA+AGG	-	chr5_1:53865076-53865095	None:intergenic	30.0%
AACAGCTCAAGATTACTATT+TGG	-	chr5_1:53865412-53865431	None:intergenic	30.0%
GATTTGCAAGAACAATTGAA+TGG	-	chr5_1:53865738-53865757	None:intergenic	30.0%
AGTTGTTCTTTGCAAAAACA+AGG	-	chr5_1:53865789-53865808	None:intergenic	30.0%
GTAGTGATTAAATGTAGAAG+TGG	+	chr5_1:53866245-53866264	Msa0737020:three_prime_UTR	30.0%
TTTGTAAAATCTCCATGTAG+TGG	+	chr5_1:53866333-53866352	Msa0737020:three_prime_UTR	30.0%
GATCTGAGGATTGAATTTAA+AGG	-	chr5_1:53865076-53865095	None:intergenic	30.0%
AACAGCTCAAGATTACTATT+TGG	-	chr5_1:53865412-53865431	None:intergenic	30.0%
GATTTGCAAGAACAATTGAA+TGG	-	chr5_1:53865738-53865757	None:intergenic	30.0%
AGTTGTTCTTTGCAAAAACA+AGG	-	chr5_1:53865789-53865808	None:intergenic	30.0%

Showing 1 to 10 of 239 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	53864987	53866535	53864987	ID=Msa0737020;Name=Msa0737020
chr5_1	mRNA	53864987	53866535	53864987	ID=Msa0737020-mRNA-1;Parent=Msa0737020;Name=Msa0737020-mRNA-1;_AED=0.00;_eAED=0.00;_QI=228\|1\|1\|1\|1\|1\|2\|338\|204
chr5_1	exon	53864987	53865265	53864987	ID=Msa0737020-mRNA-1:exon:15155;Parent=Msa0737020-mRNA-1
chr5_1	exon	53865634	53866535	53865634	ID=Msa0737020-mRNA-1:exon:15156;Parent=Msa0737020-mRNA-1
chr5_1	five_prime_UTR	53864987	53865214	53864987	ID=Msa0737020-mRNA-1:five_prime_utr;Parent=Msa0737020-mRNA-1
chr5_1	CDS	53865215	53865265	53865215	ID=Msa0737020-mRNA-1:cds;Parent=Msa0737020-mRNA-1
chr5_1	CDS	53865634	53866197	53865634	ID=Msa0737020-mRNA-1:cds;Parent=Msa0737020-mRNA-1
chr5_1	three_prime_UTR	53866198	53866535	53866198	ID=Msa0737020-mRNA-1:three_prime_utr;Parent=Msa0737020-mRNA-1

Gene Sequence

>Msa0737020

ATGGCTACTCAAGAGGTTAATAAGCCTCTTTCACTTCCTCCATACCCTGAGATGATTATGAAGGCACTGGAAGCACTGAATGAACCAAATGGTTCAAACAAATCATCAATTTCAAACTACATAGAATCAATCTATGGTGAATTACCAGAAGGCCATTCAATTGTTCTTGCAAATCACCTTAACCAGATGAAGGAAAATGGTGACCTTGTTTTTGCAAAGAACAACTACATGAAGCCTGATCCAAATGCACCACCAAAGAGAGGACGTGGAAGACCACCAAAGCCAAAGGATCCATTGGCTCCACCACCAGCTGCTGTTCTGTCCCCACCAAGGCCAAGAGGTCGTCCTCCTAAGGACCCAAATGCACCTCCAAAGACCCCTAAGGCTGCTTCAAGTGGAAGAGGAAGGGGTAGGCCAAAGAAGGTTCAAAGGACTGAGAATGTTTCAAATCCAAGTGGTGGAGATGGTGCTGGTGCTGCTGCTGCTGCTGAGGTTGATGATGATGATGCTGCTACAAGTGTTGCTGCTGTTGCTGTTCCAACTACTAGTGGAAGGGGAAGGGGTAGGCCTCCTAAGGTTAAGCCTCAGATGACTGAAGTGAGTGTTGAATCATAG

Protein sequence

>Msa0737020

MATQEVNKPLSLPPYPEMIMKALEALNEPNGSNKSSISNYIESIYGELPEGHSIVLANHLNQMKENGDLVFAKNNYMKPDPNAPPKRGRGRPPKPKDPLAPPPAAVLSPPRPRGRPPKDPNAPPKTPKAASSGRGRGRPKKVQRTENVSNPSGGDGAGAAAAAEVDDDDAATSVAAVAVPTTSGRGRGRPPKVKPQMTEVSVES*