AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0100600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0100600 MtrunA17_Chr1g0149101 94.521 584 17 3 1 570 285 867 0.0 1099
Msa0100600 MtrunA17_Chr5g0394661 34.596 396 195 11 10 364 277 649 2.57e-55 199
Msa0100600 MtrunA17_Chr8g0390351 41.040 173 90 6 174 340 52 218 2.80e-29 122
Msa0100600 MtrunA17_Chr3g0139951 38.172 186 106 5 144 326 90 269 4.80e-29 119
Msa0100600 MtrunA17_Chr6g0485811 47.727 132 60 3 201 329 128 253 1.16e-28 120
Msa0100600 MtrunA17_Chr1g0158111 82.258 62 11 0 127 188 5 66 4.93e-28 107
Msa0100600 MtrunA17_Chr1g0205031 37.008 127 78 1 203 329 407 531 7.10e-24 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0100600 AT3G22780.1 33.396 536 246 19 28 548 254 693 1.70e-62 218
Msa0100600 AT3G22760.2 39.185 319 152 9 23 341 66 342 2.51e-53 189
Msa0100600 AT3G22760.1 39.185 319 152 9 23 341 189 465 1.65e-52 189
Msa0100600 AT4G14770.1 39.145 304 141 9 28 329 240 501 9.00e-52 188
Msa0100600 AT4G14770.3 39.145 304 141 9 28 329 221 482 1.07e-51 188
Msa0100600 AT4G14770.2 39.145 304 141 9 28 329 220 481 1.14e-51 188
Msa0100600 AT3G04850.1 32.938 337 171 8 14 326 271 576 1.38e-46 173
Msa0100600 AT5G25790.1 39.785 186 93 7 159 338 56 228 2.29e-30 124
Msa0100600 AT5G25790.3 40.761 184 90 8 159 338 56 224 2.35e-30 124
Msa0100600 AT5G25790.2 40.437 183 90 7 162 338 59 228 3.43e-30 124
Msa0100600 AT2G20110.3 46.099 141 67 4 201 337 119 254 5.17e-30 124
Msa0100600 AT2G20110.1 46.099 141 67 4 201 337 119 254 5.91e-30 124
Msa0100600 AT2G20110.2 46.099 141 67 4 201 337 119 254 7.95e-30 124
Msa0100600 AT4G29000.1 43.885 139 73 4 201 337 132 267 6.43e-28 118
Msa0100600 AT3G16160.1 46.774 124 60 3 201 324 66 183 1.35e-24 106

Find 159 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCTCTTCTTCAATCTATT+TGG 0.177641 1_3:-7061078 Msa0100600:three_prime_UTR
CGTAGACGCTGCCTACAATT+TGG 0.186201 1_3:-7064124 Msa0100600:CDS
TGCGGTATTCGCCAGTTATC+TGG 0.216353 1_3:-7061598 Msa0100600:CDS
AACACGGCCATCCTTCTTAA+AGG 0.235925 1_3:+7060824 None:intergenic
GTGGAGGAGAAACTCTCTTT+TGG 0.268257 1_3:+7061416 None:intergenic
GAAGGATGGCCGTGTTAATT+AGG 0.281792 1_3:-7060817 Msa0100600:three_prime_UTR
CTATTTGGTGTAGAATGTTT+TGG 0.292638 1_3:-7061124 Msa0100600:three_prime_UTR
TGGTAACAGAGTAGAATTTC+AGG 0.294634 1_3:-7063343 Msa0100600:CDS
GATTCATACAATAAGTAATC+TGG 0.298960 1_3:+7061013 None:intergenic
GAAGCTGCTTCCGTTGTTCT+TGG 0.299878 1_3:-7064100 Msa0100600:CDS
CATTGCAACAATGGTGTTAC+AGG 0.307892 1_3:+7061927 None:intergenic
GTAGACGCTGCCTACAATTT+GGG 0.311899 1_3:-7064123 Msa0100600:CDS
CTCTTATCAGGTGCATTTGC+CGG 0.312680 1_3:+7063725 None:intergenic
ATCCTCAACTCCGTCCAATA+TGG 0.338930 1_3:-7063861 Msa0100600:CDS
TGATGTTCCACTGAATAATA+TGG 0.341118 1_3:-7063241 Msa0100600:intron
TTGCAATGGCAATGAGGATT+CGG 0.342240 1_3:-7061272 Msa0100600:CDS
CTTCAATCTATTTGGCAAAC+AGG 0.353004 1_3:-7061070 Msa0100600:three_prime_UTR
CTGGCGAATACCGCATCTAT+TGG 0.354125 1_3:+7061606 None:intergenic
GGGCGTACCCTCCTCTTATC+AGG 0.364892 1_3:+7063713 None:intergenic
TGCAGTTACTGTGATTGTTT+TGG 0.366597 1_3:-7063408 Msa0100600:intron
AGCAAATGCTTGTGGATTAC+GGG 0.369212 1_3:+7063287 None:intergenic
AAAAGATTGATCATCCATAT+TGG 0.378531 1_3:+7063847 None:intergenic
AGCTGCACATGGTACAATCT+TGG 0.387960 1_3:+7063263 None:intergenic
ATTTGCTTTCACAGACTTGA+TGG 0.391070 1_3:+7061447 None:intergenic
GAGCAAATGCTTGTGGATTA+CGG 0.393901 1_3:+7063286 None:intergenic
CTACTGAAGCATCAGTTTCA+TGG 0.398320 1_3:+7063804 None:intergenic
CGAGACTCCATTTGAGCATA+TGG 0.410622 1_3:+7060848 None:intergenic
TGCAATGGCAATGAGGATTC+GGG 0.411133 1_3:-7061271 Msa0100600:CDS
TGATCCTATCCAGGTTGTTA+AGG 0.413131 1_3:-7065034 Msa0100600:CDS
AAGTTAGCGCTTGGGGTAAT+CGG 0.415030 1_3:+7061547 None:intergenic
GACAGAAAATTGTGACAATC+AGG 0.415519 1_3:-7061983 Msa0100600:CDS
CAACCCAATGCCTGGTGGCT+TGG 0.420396 1_3:+7064009 None:intergenic
GCGGTATTCGCCAGTTATCT+GGG 0.421949 1_3:-7061597 Msa0100600:CDS
CATCATCTAAGTTAGCGCTT+GGG 0.426755 1_3:+7061539 None:intergenic
ACTTTGCACCCTGCTTGCCT+TGG 0.435412 1_3:+7061779 None:intergenic
CGGATTGGATCAAGCTCCTC+AGG 0.435804 1_3:-7061379 Msa0100600:CDS
GCTAACGTTGGATGCTCGAC+TGG 0.440058 1_3:-7062947 Msa0100600:CDS
TGCCCTCAATGTGTGTATAA+TGG 0.440939 1_3:-7061207 Msa0100600:three_prime_UTR
GAAGCTTCCTTCAATACATC+AGG 0.449228 1_3:+7061475 None:intergenic
GATGGATGTATGAATGTCTT+TGG 0.451729 1_3:-7062914 Msa0100600:CDS
TGAAACACCTGATGTATTGA+AGG 0.458665 1_3:-7061482 Msa0100600:CDS
TTCTTACAGTTGCACGTCTT+AGG 0.458861 1_3:+7063526 None:intergenic
TCATCATCTAAGTTAGCGCT+TGG 0.462532 1_3:+7061538 None:intergenic
TTTCCAAGCCACCAGGCATT+GGG 0.462604 1_3:-7064012 Msa0100600:CDS
GTTTCCAAGCCACCAGGCAT+TGG 0.462633 1_3:-7064013 Msa0100600:CDS
TCGATGGATTCTGTCAAGAT+AGG 0.463592 1_3:+7063755 None:intergenic
TACGGATGCCATGATACTTT+AGG 0.463804 1_3:+7064143 None:intergenic
TTGATCCAATCCGAAGTAGA+TGG 0.467929 1_3:+7061389 None:intergenic
GCTGCACATGGTACAATCTT+GGG 0.476181 1_3:+7063264 None:intergenic
ATAATGGTTGGCATCTTGTC+TGG 0.477239 1_3:-7061191 Msa0100600:three_prime_UTR
CCTAGTTGTGCTTCAACTAC+AGG 0.478757 1_3:-7063956 Msa0100600:CDS
AAGCAGCTTCCCCAAATTGT+AGG 0.478821 1_3:+7064113 None:intergenic
TGCTGTTCCATATGCTCAAA+TGG 0.479425 1_3:-7060855 Msa0100600:three_prime_UTR
GGGGTCAACGGCGGGAATGA+AGG 0.482884 1_3:+7061316 None:intergenic
CAGCGCAAGGGGTCAACGGC+GGG 0.483041 1_3:+7061308 None:intergenic
GTTGAATTCCTCAGCATCTG+TGG 0.485615 1_3:+7063691 None:intergenic
AGAATCCATCGACCTATATC+CGG 0.490265 1_3:-7063744 Msa0100600:CDS
CAACATTGTTGAAGAAGGGT+TGG 0.492695 1_3:-7062024 Msa0100600:CDS
TTTGTCCAGCCAAGGCAAGC+AGG 0.495977 1_3:-7061788 Msa0100600:intron
TTAACAACCTGGATAGGATC+AGG 0.496537 1_3:+7065036 None:intergenic
GAGAGCAACATTGTTGAAGA+AGG 0.497547 1_3:-7062029 Msa0100600:CDS
ACAGGTGAGAGGTGATTTGC+TGG 0.503058 1_3:+7061945 None:intergenic
CGGCAAATGCACCTGATAAG+AGG 0.504086 1_3:-7063724 Msa0100600:CDS
AAAGAGGTTGCAATTGCAAA+AGG 0.504487 1_3:-7063099 Msa0100600:CDS
AGAGGGAGGTGTCACAGAAA+TGG 0.508989 1_3:+7061094 None:intergenic
ATTCATACAATAAGTAATCT+GGG 0.514405 1_3:+7061014 None:intergenic
AATTCCTTAACAACCTGGAT+AGG 0.516397 1_3:+7065030 None:intergenic
ATTGATGCCTGATCCTATCC+AGG 0.518090 1_3:-7065043 None:intergenic
CAAATTGTAGGCAGCGTCTA+CGG 0.518260 1_3:+7064125 None:intergenic
ATCATCTAAGTTAGCGCTTG+GGG 0.519646 1_3:+7061540 None:intergenic
TACCGCATCTATTGGAGAGT+TGG 0.524893 1_3:+7061614 None:intergenic
TTGTCCAGCCAAGGCAAGCA+GGG 0.526069 1_3:-7061787 Msa0100600:intron
TTTAAATGCAACCCAATGCC+TGG 0.526474 1_3:+7064001 None:intergenic
TCCTCAGGTGGCTTGAAAAG+TGG 0.529192 1_3:-7061364 Msa0100600:CDS
TGCCAAATAGATTGAAGAAG+AGG 0.530591 1_3:+7061076 None:intergenic
CAGAGCCATCTACTTCGGAT+TGG 0.530846 1_3:-7061394 Msa0100600:CDS
TGGAGTCTCGTCCTTTAAGA+AGG 0.532716 1_3:-7060835 Msa0100600:three_prime_UTR
CATCTATTGGAGAGTTGGTA+TGG 0.533401 1_3:+7061619 None:intergenic
GCTGGAATCTTCTGTGGCGA+CGG 0.536040 1_3:-7063384 Msa0100600:CDS
TTGAATTCCTCAGCATCTGT+GGG 0.538648 1_3:+7063692 None:intergenic
TACTCAGAGCATTGCAACAA+TGG 0.538876 1_3:+7061918 None:intergenic
CAGGCTAGCCTAAAGTATCA+TGG 0.540060 1_3:-7064151 Msa0100600:CDS
CAACCATTATACACACATTG+AGG 0.540740 1_3:+7061204 None:intergenic
TTTCAAATTCCTTAACAACC+TGG 0.542133 1_3:+7065025 None:intergenic
TTTGCTTTCACAGACTTGAT+GGG 0.542250 1_3:+7061448 None:intergenic
TTACCTCAGAACCATCTTGT+GGG 0.543543 1_3:+7064956 None:intergenic
ACATGCTTCTAGCAATGAAA+GGG 0.544689 1_3:-7062051 Msa0100600:CDS
TCAACCATCCTAGCACCTCC+AGG 0.545986 1_3:-7063673 Msa0100600:CDS
GTTGCACGTCTTAGGTCCAT+TGG 0.547167 1_3:+7063534 None:intergenic
GTCTCGTCCTTTAAGAAGGA+TGG 0.547432 1_3:-7060831 Msa0100600:three_prime_UTR
GTGACAGTTTCCAAGCCACC+AGG 0.548258 1_3:-7064019 Msa0100600:CDS
CTCCACAGAGCCATCTACTT+CGG 0.551057 1_3:-7061399 Msa0100600:CDS
AATGTCTTTGGCAAGAGAGA+AGG 0.551265 1_3:-7062902 Msa0100600:intron
ATTCTCTGAATTTACTTGTG+AGG 0.552178 1_3:+7064981 None:intergenic
ATCCATATTGGACGGAGTTG+AGG 0.552766 1_3:+7063859 None:intergenic
AAGTAATACTACACATTGGA+AGG 0.552794 1_3:+7060961 None:intergenic
CAGGTGCATTTGCCGGATAT+AGG 0.554569 1_3:+7063732 None:intergenic
CAGGTGGCTTGAAAAGTGGC+AGG 0.557391 1_3:-7061360 Msa0100600:CDS
AACCATTATACACACATTGA+GGG 0.557674 1_3:+7061205 None:intergenic
CCTGTAGTTGAAGCACAACT+AGG 0.562369 1_3:+7063956 None:intergenic
ATTTGTCAAAAGGCTAACGT+TGG 0.564831 1_3:-7062959 Msa0100600:intron
CGGTATTCGCCAGTTATCTG+GGG 0.571016 1_3:-7061596 Msa0100600:CDS
TTTGGTGCTGGAATCTTCTG+TGG 0.572134 1_3:-7063390 Msa0100600:CDS
GGCGACGGTTGTGCTTGCGA+AGG 0.572382 1_3:-7063369 Msa0100600:CDS
GCCAAATAGATTGAAGAAGA+GGG 0.573771 1_3:+7061077 None:intergenic
ATCTTGGGAGCAAATGCTTG+TGG 0.574082 1_3:+7063279 None:intergenic
GAATCAGCGCAAGGGGTCAA+CGG 0.575782 1_3:+7061304 None:intergenic
AACATGCTTCTAGCAATGAA+AGG 0.575833 1_3:-7062052 Msa0100600:CDS
AACATTCTACACCAAATAGC+GGG 0.579022 1_3:+7061128 None:intergenic
ATACAGAATCTGTTCTGAGA+AGG 0.581595 1_3:+7060904 None:intergenic
GATTCTAAAGTCCTTTGCAA+TGG 0.584197 1_3:-7061286 Msa0100600:CDS
AGAGCAACATTGTTGAAGAA+GGG 0.586625 1_3:-7062028 Msa0100600:CDS
GACTTTAGAATCAGCGCAAG+GGG 0.586639 1_3:+7061297 None:intergenic
TCAGAGAATATCCCACAAGA+TGG 0.588289 1_3:-7064967 Msa0100600:CDS
TAGACGCTGCCTACAATTTG+GGG 0.588410 1_3:-7064122 Msa0100600:CDS
GATTGATCATCCATATTGGA+CGG 0.592859 1_3:+7063851 None:intergenic
TGACAACACCGGCATCAGCT+AGG 0.595994 1_3:-7063126 Msa0100600:CDS
TTCTGTCAAGATAGGAGACT+CGG 0.595997 1_3:+7063763 None:intergenic
ATTTGAAAATTGCAGTGAGA+TGG 0.600065 1_3:-7065010 Msa0100600:CDS
ATTACCTCAGAACCATCTTG+TGG 0.602494 1_3:+7064955 None:intergenic
GGACTTTAGAATCAGCGCAA+GGG 0.602915 1_3:+7061296 None:intergenic
CTCAATGTGTGTATAATGGT+TGG 0.603810 1_3:-7061203 Msa0100600:three_prime_UTR
AACTTAGATGATGAATCAGA+TGG 0.610248 1_3:-7061529 Msa0100600:CDS
GGTTGTGCTTGCGAAGGCTG+TGG 0.610748 1_3:-7063363 Msa0100600:CDS
CGAAGTAGATGGCTCTGTGG+AGG 0.611110 1_3:+7061400 None:intergenic
AGTCCTTTGCAATGGCAATG+AGG 0.616936 1_3:-7061278 Msa0100600:CDS
GCATCAGCTAGGCACAAAAG+AGG 0.618145 1_3:-7063115 Msa0100600:CDS
TATCCCACAAGATGGTTCTG+AGG 0.620911 1_3:-7064959 Msa0100600:intron
CTATTGGAGAGTTGGTATGG+TGG 0.623132 1_3:+7061622 None:intergenic
ATTGGATCAAGCTCCTCAGG+TGG 0.623354 1_3:-7061376 Msa0100600:CDS
AATCCTCATTGCCATTGCAA+AGG 0.624686 1_3:+7061275 None:intergenic
TATAAAGTAATACTACACAT+TGG 0.626331 1_3:+7060957 None:intergenic
AGGACTTTAGAATCAGCGCA+AGG 0.627509 1_3:+7061295 None:intergenic
TCAGCGCAAGGGGTCAACGG+CGG 0.628739 1_3:+7061307 None:intergenic
TCTTATACCATATTATTCAG+TGG 0.629452 1_3:+7063234 None:intergenic
CAAATGCACCTGATAAGAGG+AGG 0.630195 1_3:-7063721 Msa0100600:CDS
CTTATTACTTCCAAGAACAA+CGG 0.633004 1_3:+7064090 None:intergenic
ACAAGTACTGATGATGCCAA+TGG 0.639150 1_3:-7063550 Msa0100600:CDS
CTTCATCTACAGAAAATGAG+TGG 0.639866 1_3:-7061654 Msa0100600:CDS
GGTACGCCCCACAGATGCTG+AGG 0.649944 1_3:-7063699 Msa0100600:CDS
TCGACTGGATGTCGATGTGA+TGG 0.651749 1_3:-7062932 Msa0100600:CDS
TCTGTAGATGAAGAATGTGT+AGG 0.652826 1_3:+7061664 None:intergenic
AGTGGAACATCAGCTGCACA+TGG 0.663360 1_3:+7063252 None:intergenic
TACCAACTCTCCAATAGATG+CGG 0.673526 1_3:-7061616 Msa0100600:CDS
AAATGCACCTGATAAGAGGA+GGG 0.675925 1_3:-7063720 Msa0100600:CDS
ATTTGCCGGATATAGGTCGA+TGG 0.681858 1_3:+7063739 None:intergenic
AAACATTCTACACCAAATAG+CGG 0.685950 1_3:+7061127 None:intergenic
GGTATTCGCCAGTTATCTGG+GGG 0.691155 1_3:-7061595 Msa0100600:CDS
ACAGGTGTGAGATTATCAGA+TGG 0.691185 1_3:-7063938 Msa0100600:intron
TCTAAGTAGCCTAATTAACA+CGG 0.691450 1_3:+7060808 None:intergenic
AAATGCAACCCAATGCCTGG+TGG 0.691964 1_3:+7064004 None:intergenic
AGATGTGAATATGACAACAC+CGG 0.696103 1_3:-7063137 Msa0100600:CDS
TTTGCATATAGTGGAAAACG+TGG 0.696559 1_3:-7063888 Msa0100600:intron
TGAATTCCTCAGCATCTGTG+GGG 0.698955 1_3:+7063693 None:intergenic
ATCCGAAGTAGATGGCTCTG+TGG 0.709057 1_3:+7061397 None:intergenic
ACAATGGTGTTACAGGTGAG+AGG 0.709448 1_3:+7061934 None:intergenic
AAATAGATTGAAGAAGAGGG+AGG 0.711927 1_3:+7061080 None:intergenic
GAATGTGCCAGACTGCTGCG+TGG 0.712112 1_3:+7061715 None:intergenic
GTAGTTGAAGCACAACTAGG+TGG 0.726466 1_3:+7063959 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTAAATATTTGTCAAA+AGG - chr1_3:7062887-7062906 Msa0100600:intron 10.0%
!!! AAATACAATAACATAATTTT+TGG - chr1_3:7063444-7063463 Msa0100600:intron 10.0%
!!! TTCTGTATATTTTATATTTT+TGG - chr1_3:7064967-7064986 Msa0100600:CDS 10.0%
!!! TCTGTATATTTTATATTTTT+GGG - chr1_3:7064968-7064987 Msa0100600:CDS 10.0%
!!! TAATTGATTTTTTTTCTTTC+AGG - chr1_3:7060920-7060939 Msa0100600:three_prime_UTR 15.0%
!!! CTTTTAGTTTTTTTAATCAT+TGG - chr1_3:7061068-7061087 Msa0100600:three_prime_UTR 15.0%
!!! AAATATCACCTAATTTTTTA+AGG + chr1_3:7062680-7062699 None:intergenic 15.0%
!!! TTTGTTTTAAAAGAAGTATT+AGG - chr1_3:7063311-7063330 Msa0100600:CDS 15.0%
!!! GAAATTTTAGAAACTAAATT+GGG + chr1_3:7063405-7063424 None:intergenic 15.0%
!!! AGAAATTTTAGAAACTAAAT+TGG + chr1_3:7063406-7063425 None:intergenic 15.0%
!! AATTATGTTATTGTATTTCA+GGG + chr1_3:7063442-7063461 None:intergenic 15.0%
!! AAATTATGTTATTGTATTTC+AGG + chr1_3:7063443-7063462 None:intergenic 15.0%
!!! AGCAATTTTTCTTAAATTTT+AGG - chr1_3:7063598-7063617 Msa0100600:intron 15.0%
!!! GCAATTTTTCTTAAATTTTA+GGG - chr1_3:7063599-7063618 Msa0100600:intron 15.0%
!!! CAATTTTTCTTAAATTTTAG+GGG - chr1_3:7063600-7063619 Msa0100600:intron 15.0%
!! AAAAGTCAGCAATAATTTAT+TGG - chr1_3:7061519-7061538 Msa0100600:CDS 20.0%
!!! ATTTAGAGCATATAGAAATA+TGG + chr1_3:7062833-7062852 None:intergenic 20.0%
!!! ATAATTTTTGGTACTTCTTT+TGG - chr1_3:7063456-7063475 Msa0100600:intron 20.0%
!!! CATATGTATTCATTTTAATG+TGG + chr1_3:7063503-7063522 None:intergenic 20.0%
!! CACATTAAAATGAATACATA+TGG - chr1_3:7063501-7063520 Msa0100600:intron 20.0%
!! AAATAAATTCCTATAACATG+TGG + chr1_3:7063528-7063547 None:intergenic 20.0%
!!! TTTTTTAAATGCAGATTTTG+TGG - chr1_3:7063775-7063794 Msa0100600:CDS 20.0%
!! ATTCATACAATAAGTAATCT+GGG + chr1_3:7064845-7064864 None:intergenic 20.0%
!! TATAAAGTAATACTACACAT+TGG + chr1_3:7064902-7064921 None:intergenic 20.0%
! AAAGTTCATATATTCATCAG+AGG + chr1_3:7060957-7060976 None:intergenic 25.0%
! ATAAACAAAATCATTCAGAG+AGG + chr1_3:7061014-7061033 None:intergenic 25.0%
!!! ACATGTATTTTGTTTGTACT+TGG - chr1_3:7061124-7061143 Msa0100600:three_prime_UTR 25.0%
!!! TCATTGATCTAGTTTGTTTA+TGG - chr1_3:7061177-7061196 Msa0100600:three_prime_UTR 25.0%
! AACTTGATAAGCAGAAAAAT+GGG + chr1_3:7061317-7061336 None:intergenic 25.0%
! AAACTTGATAAGCAGAAAAA+TGG + chr1_3:7061318-7061337 None:intergenic 25.0%
!!! TTATCAAGTTTTGCTTTGTT+TGG - chr1_3:7061327-7061346 Msa0100600:CDS 25.0%
! ATGCAAACTTATAGAAGATT+TGG + chr1_3:7061955-7061974 None:intergenic 25.0%
! TTCTATAAGTTTGCATATAG+TGG - chr1_3:7061959-7061978 Msa0100600:CDS 25.0%
! AAAAGATTGATCATCCATAT+TGG + chr1_3:7062012-7062031 None:intergenic 25.0%
! ATATAGAGCAATGCAATATT+TGG + chr1_3:7062277-7062296 None:intergenic 25.0%
! AATATTGCATTGCTCTATAT+AGG - chr1_3:7062277-7062296 Msa0100600:intron 25.0%
! ATTGCATATCATAGAAAGTA+TGG + chr1_3:7062402-7062421 None:intergenic 25.0%
! TCTTATACCATATTATTCAG+TGG + chr1_3:7062625-7062644 None:intergenic 25.0%
!! AAAATACTGTGAATGTTTTC+AGG - chr1_3:7062794-7062813 Msa0100600:intron 25.0%
!! TAAATGTTATGGATTGATGT+TGG - chr1_3:7063051-7063070 Msa0100600:intron 25.0%
!! AAATGTTATGGATTGATGTT+GGG - chr1_3:7063052-7063071 Msa0100600:intron 25.0%
! AAAAACTTAAAAGTTGTGCT+GGG + chr1_3:7063131-7063150 None:intergenic 25.0%
! AAAAAACTTAAAAGTTGTGC+TGG + chr1_3:7063132-7063151 None:intergenic 25.0%
! TATAGGAATTTATTTCAGCA+TGG - chr1_3:7063533-7063552 Msa0100600:CDS 25.0%
! TTTAAAAAAAGGGGTCATTT+GGG + chr1_3:7064814-7064833 None:intergenic 25.0%
!! GAACCTTTGTTTAAAAAAAG+GGG + chr1_3:7064823-7064842 None:intergenic 25.0%
!! GGAACCTTTGTTTAAAAAAA+GGG + chr1_3:7064824-7064843 None:intergenic 25.0%
! GATTCATACAATAAGTAATC+TGG + chr1_3:7064846-7064865 None:intergenic 25.0%
TTTCAAATTCCTTAACAACC+TGG + chr1_3:7060834-7060853 None:intergenic 30.0%
ATTTGAAAATTGCAGTGAGA+TGG - chr1_3:7060846-7060865 Msa0100600:three_prime_UTR 30.0%
ATTCTCTGAATTTACTTGTG+AGG + chr1_3:7060878-7060897 None:intergenic 30.0%
TTTAACGAAATTAGCAGAAG+TGG - chr1_3:7061228-7061247 Msa0100600:exon 30.0%
!! GCATTATTTCTGCATAAGAT+AGG - chr1_3:7061257-7061276 Msa0100600:CDS 30.0%
ACTTGATAAGCAGAAAAATG+GGG + chr1_3:7061316-7061335 None:intergenic 30.0%
! GCAATAATTTATTGGCTACA+AGG - chr1_3:7061527-7061546 Msa0100600:CDS 30.0%
!!! AGAGTTGCATTTTGATTATC+AGG - chr1_3:7061613-7061632 Msa0100600:CDS 30.0%
ATAATTGTTACAGTCAATGC+AGG - chr1_3:7061686-7061705 Msa0100600:CDS 30.0%
CTTATTACTTCCAAGAACAA+CGG + chr1_3:7061769-7061788 None:intergenic 30.0%
AGATTATCAGATGGTATACA+GGG - chr1_3:7061927-7061946 Msa0100600:CDS 30.0%
!! CATGATAACTAACTTTTTCC+TGG + chr1_3:7062204-7062223 None:intergenic 30.0%
GTTATCATGATCTTTCTCAT+AGG - chr1_3:7062215-7062234 Msa0100600:intron 30.0%
ATTTGGTAAAACTAGCAAAC+AGG + chr1_3:7062260-7062279 None:intergenic 30.0%
TGATGTTCCACTGAATAATA+TGG - chr1_3:7062615-7062634 Msa0100600:intron 30.0%
TCTGGTCAGTATAAATGTTA+TGG - chr1_3:7063040-7063059 Msa0100600:intron 30.0%
ACCAAATACTAGTCCTTATA+AGG - chr1_3:7063088-7063107 Msa0100600:CDS 30.0%
! TCCTTATAAGGACTAGTATT+TGG + chr1_3:7063092-7063111 None:intergenic 30.0%
! CCTCAACAATTTTCCTTATA+AGG + chr1_3:7063104-7063123 None:intergenic 30.0%
CCTTATAAGGAAAATTGTTG+AGG - chr1_3:7063101-7063120 Msa0100600:CDS 30.0%
!! TAAATTTTAGGGGTTCAAAC+TGG - chr1_3:7063610-7063629 Msa0100600:intron 30.0%
AACTTAGATGATGAATCAGA+TGG - chr1_3:7064327-7064346 Msa0100600:intron 30.0%
AACCATTATACACACATTGA+GGG + chr1_3:7064654-7064673 None:intergenic 30.0%
!!! TTTTTTTTCTTCCCGCTATT+TGG - chr1_3:7064717-7064736 Msa0100600:intron 30.0%
AAACATTCTACACCAAATAG+CGG + chr1_3:7064732-7064751 None:intergenic 30.0%
!!! CTATTTGGTGTAGAATGTTT+TGG - chr1_3:7064732-7064751 Msa0100600:intron 30.0%
GTTTAAAAAAAGGGGTCATT+TGG + chr1_3:7064815-7064834 None:intergenic 30.0%
!!! TGACCCCTTTTTTTAAACAA+AGG - chr1_3:7064817-7064836 Msa0100600:intron 30.0%
! GGGAACCTTTGTTTAAAAAA+AGG + chr1_3:7064825-7064844 None:intergenic 30.0%
AAGTAATACTACACATTGGA+AGG + chr1_3:7064898-7064917 None:intergenic 30.0%
AATTCCTTAACAACCTGGAT+AGG + chr1_3:7060829-7060848 None:intergenic 35.0%
ACAAAATCATTCAGAGAGGA+GGG + chr1_3:7061010-7061029 None:intergenic 35.0%
AACAAAATCATTCAGAGAGG+AGG + chr1_3:7061011-7061030 None:intergenic 35.0%
GTACTGTGCTCTTCTTTAAT+TGG + chr1_3:7061106-7061125 None:intergenic 35.0%
TTGATAAGCAGAAAAATGGG+GGG + chr1_3:7061314-7061333 None:intergenic 35.0%
CTTGATAAGCAGAAAAATGG+GGG + chr1_3:7061315-7061334 None:intergenic 35.0%
!!! TCAAGTTTTGCTTTGTTTGG+AGG - chr1_3:7061330-7061349 Msa0100600:CDS 35.0%
GTTTGGAGGTTTCAAAATTG+TGG - chr1_3:7061344-7061363 Msa0100600:CDS 35.0%
TGAGTCCATGATGTAATATC+AGG + chr1_3:7061420-7061439 None:intergenic 35.0%
GATATTACATCATGGACTCA+AGG - chr1_3:7061420-7061439 Msa0100600:CDS 35.0%
!! TAAGGGCATCTCTTAGAATA+AGG - chr1_3:7061444-7061463 Msa0100600:CDS 35.0%
!! CTACAAGGTTTTAGTCATGT+AGG - chr1_3:7061542-7061561 Msa0100600:CDS 35.0%
GTGTAATGGCATTATCTACT+TGG - chr1_3:7061579-7061598 Msa0100600:CDS 35.0%
AACTTCAAGCAACGCAAAAA+TGG - chr1_3:7061809-7061828 Msa0100600:intron 35.0%
GAGATTATCAGATGGTATAC+AGG - chr1_3:7061926-7061945 Msa0100600:CDS 35.0%
GATTATCAGATGGTATACAG+GGG - chr1_3:7061928-7061947 Msa0100600:CDS 35.0%
! TTTGCATATAGTGGAAAACG+TGG - chr1_3:7061968-7061987 Msa0100600:CDS 35.0%
GATTGATCATCCATATTGGA+CGG + chr1_3:7062008-7062027 None:intergenic 35.0%
!! GATAACTAACTTTTTCCTGG+AGG + chr1_3:7062201-7062220 None:intergenic 35.0%
! TGCAGTTACTGTGATTGTTT+TGG - chr1_3:7062448-7062467 Msa0100600:intron 35.0%
TGGTAACAGAGTAGAATTTC+AGG - chr1_3:7062513-7062532 Msa0100600:intron 35.0%
!!! CCTAATTTTTTAAGGCTAGC+AGG + chr1_3:7062672-7062691 None:intergenic 35.0%
!! CCTGCTAGCCTTAAAAAATT+AGG - chr1_3:7062669-7062688 Msa0100600:intron 35.0%
!!! TATTTTGATGTGACCTTTGC+AGG - chr1_3:7062695-7062714 Msa0100600:intron 35.0%
ATATTCACATCTTCCTGCAA+AGG + chr1_3:7062711-7062730 None:intergenic 35.0%
AGATGTGAATATGACAACAC+CGG - chr1_3:7062719-7062738 Msa0100600:intron 35.0%
AAAGAGGTTGCAATTGCAAA+AGG - chr1_3:7062757-7062776 Msa0100600:intron 35.0%
ATTTGTCAAAAGGCTAACGT+TGG - chr1_3:7062897-7062916 Msa0100600:intron 35.0%
GATGGATGTATGAATGTCTT+TGG - chr1_3:7062942-7062961 Msa0100600:CDS 35.0%
!! ACACAGTTTAACTTGTTGTC+TGG - chr1_3:7063022-7063041 Msa0100600:intron 35.0%
ACATATGGTCCACATGTTAT+AGG - chr1_3:7063516-7063535 Msa0100600:CDS 35.0%
TGAGAGACTAAACTGAAAGT+TGG - chr1_3:7063644-7063663 Msa0100600:intron 35.0%
!! CTGAAAGTTGGTGTGAATTA+CGG - chr1_3:7063656-7063675 Msa0100600:intron 35.0%
TATAGTTGACATCCACATGA+GGG - chr1_3:7063706-7063725 Msa0100600:CDS 35.0%
! AAATGCAGATTTTGTGGCAA+TGG - chr1_3:7063781-7063800 Msa0100600:CDS 35.0%
AACATGCTTCTAGCAATGAA+AGG - chr1_3:7063804-7063823 Msa0100600:CDS 35.0%
ACATGCTTCTAGCAATGAAA+GGG - chr1_3:7063805-7063824 Msa0100600:CDS 35.0%
AGAGCAACATTGTTGAAGAA+GGG - chr1_3:7063828-7063847 Msa0100600:CDS 35.0%
GACAGAAAATTGTGACAATC+AGG - chr1_3:7063873-7063892 Msa0100600:CDS 35.0%
ACAAATGCAAAAAGGCCAAT+CGG + chr1_3:7064053-7064072 None:intergenic 35.0%
!!! GCGTGGTTTTTTAGAAGATT+TGG + chr1_3:7064127-7064146 None:intergenic 35.0%
TCTGTAGATGAAGAATGTGT+AGG + chr1_3:7064195-7064214 None:intergenic 35.0%
CTTCATCTACAGAAAATGAG+TGG - chr1_3:7064202-7064221 Msa0100600:intron 35.0%
TGAAACACCTGATGTATTGA+AGG - chr1_3:7064374-7064393 Msa0100600:intron 35.0%
TTTGCTTTCACAGACTTGAT+GGG + chr1_3:7064411-7064430 None:intergenic 35.0%
ATTTGCTTTCACAGACTTGA+TGG + chr1_3:7064412-7064431 None:intergenic 35.0%
!! GATTCTAAAGTCCTTTGCAA+TGG - chr1_3:7064570-7064589 Msa0100600:intron 35.0%
CAACCATTATACACACATTG+AGG + chr1_3:7064655-7064674 None:intergenic 35.0%
CTCAATGTGTGTATAATGGT+TGG - chr1_3:7064653-7064672 Msa0100600:intron 35.0%
AACATTCTACACCAAATAGC+GGG + chr1_3:7064731-7064750 None:intergenic 35.0%
AAATAGATTGAAGAAGAGGG+AGG + chr1_3:7064779-7064798 None:intergenic 35.0%
TCCCTCTTCTTCAATCTATT+TGG - chr1_3:7064778-7064797 Msa0100600:intron 35.0%
GCCAAATAGATTGAAGAAGA+GGG + chr1_3:7064782-7064801 None:intergenic 35.0%
TGCCAAATAGATTGAAGAAG+AGG + chr1_3:7064783-7064802 None:intergenic 35.0%
CTTCAATCTATTTGGCAAAC+AGG - chr1_3:7064786-7064805 Msa0100600:intron 35.0%
!! ATACAGAATCTGTTCTGAGA+AGG + chr1_3:7064955-7064974 None:intergenic 35.0%
TTAACAACCTGGATAGGATC+AGG + chr1_3:7060823-7060842 None:intergenic 40.0%
TGATCCTATCCAGGTTGTTA+AGG - chr1_3:7060822-7060841 Msa0100600:three_prime_UTR 40.0%
TCAGAGAATATCCCACAAGA+TGG - chr1_3:7060889-7060908 Msa0100600:three_prime_UTR 40.0%
TTACCTCAGAACCATCTTGT+GGG + chr1_3:7060903-7060922 None:intergenic 40.0%
ATTACCTCAGAACCATCTTG+TGG + chr1_3:7060904-7060923 None:intergenic 40.0%
CGAGTCCTGATATTACATCA+TGG - chr1_3:7061412-7061431 Msa0100600:CDS 40.0%
ACATCATGGACTCAAGGTTA+AGG - chr1_3:7061426-7061445 Msa0100600:CDS 40.0%
CATCATGGACTCAAGGTTAA+GGG - chr1_3:7061427-7061446 Msa0100600:CDS 40.0%
ATGAGACTACAGTGGTGTAA+TGG - chr1_3:7061565-7061584 Msa0100600:CDS 40.0%
TACGGATGCCATGATACTTT+AGG + chr1_3:7061716-7061735 None:intergenic 40.0%
TTTAAATGCAACCCAATGCC+TGG + chr1_3:7061858-7061877 None:intergenic 40.0%
ACAGGTGTGAGATTATCAGA+TGG - chr1_3:7061918-7061937 Msa0100600:intron 40.0%
! CTACTGAAGCATCAGTTTCA+TGG + chr1_3:7062055-7062074 None:intergenic 40.0%
TTCTGTCAAGATAGGAGACT+CGG + chr1_3:7062096-7062115 None:intergenic 40.0%
! TCGATGGATTCTGTCAAGAT+AGG + chr1_3:7062104-7062123 None:intergenic 40.0%
AGAATCCATCGACCTATATC+CGG - chr1_3:7062112-7062131 Msa0100600:intron 40.0%
AAATGCACCTGATAAGAGGA+GGG - chr1_3:7062136-7062155 Msa0100600:intron 40.0%
TTGAATTCCTCAGCATCTGT+GGG + chr1_3:7062167-7062186 None:intergenic 40.0%
!! ACAAGTACTGATGATGCCAA+TGG - chr1_3:7062306-7062325 Msa0100600:intron 40.0%
TTCTTACAGTTGCACGTCTT+AGG + chr1_3:7062333-7062352 None:intergenic 40.0%
!!! TACTGTGATTGTTTTGGTGC+TGG - chr1_3:7062454-7062473 Msa0100600:intron 40.0%
! AGCAAATGCTTGTGGATTAC+GGG + chr1_3:7062572-7062591 None:intergenic 40.0%
! GAGCAAATGCTTGTGGATTA+CGG + chr1_3:7062573-7062592 None:intergenic 40.0%
AATGTCTTTGGCAAGAGAGA+AGG - chr1_3:7062954-7062973 Msa0100600:intron 40.0%
! TGTTATGGATTGATGTTGGG+AGG - chr1_3:7063055-7063074 Msa0100600:intron 40.0%
TACTGGCAGCATAAAGCAAA+GGG + chr1_3:7063257-7063276 None:intergenic 40.0%
TTACTGGCAGCATAAAGCAA+AGG + chr1_3:7063258-7063277 None:intergenic 40.0%
GTATAGTTGACATCCACATG+AGG - chr1_3:7063705-7063724 Msa0100600:CDS 40.0%
ATAGTTGACATCCACATGAG+GGG - chr1_3:7063707-7063726 Msa0100600:CDS 40.0%
GAGAGCAACATTGTTGAAGA+AGG - chr1_3:7063827-7063846 Msa0100600:CDS 40.0%
CAACATTGTTGAAGAAGGGT+TGG - chr1_3:7063832-7063851 Msa0100600:CDS 40.0%
!! CATTGCAACAATGGTGTTAC+AGG + chr1_3:7063932-7063951 None:intergenic 40.0%
!! TACTCAGAGCATTGCAACAA+TGG + chr1_3:7063941-7063960 None:intergenic 40.0%
TTGGCTGGACAAATGCAAAA+AGG + chr1_3:7064061-7064080 None:intergenic 40.0%
! TTTTTGCATTTGTCCAGCCA+AGG - chr1_3:7064060-7064079 Msa0100600:CDS 40.0%
!! CATCTATTGGAGAGTTGGTA+TGG + chr1_3:7064240-7064259 None:intergenic 40.0%
TACCAACTCTCCAATAGATG+CGG - chr1_3:7064240-7064259 Msa0100600:intron 40.0%
ATCATCTAAGTTAGCGCTTG+GGG + chr1_3:7064319-7064338 None:intergenic 40.0%
CATCATCTAAGTTAGCGCTT+GGG + chr1_3:7064320-7064339 None:intergenic 40.0%
TCATCATCTAAGTTAGCGCT+TGG + chr1_3:7064321-7064340 None:intergenic 40.0%
GAAGCTTCCTTCAATACATC+AGG + chr1_3:7064384-7064403 None:intergenic 40.0%
! GGAGAAACTCTCTTTTGGAT+TGG + chr1_3:7064438-7064457 None:intergenic 40.0%
TTGATCCAATCCGAAGTAGA+TGG + chr1_3:7064470-7064489 None:intergenic 40.0%
AATCCTCATTGCCATTGCAA+AGG + chr1_3:7064584-7064603 None:intergenic 40.0%
TTGCAATGGCAATGAGGATT+CGG - chr1_3:7064584-7064603 Msa0100600:intron 40.0%
! GAGGGCAATATTTTGCTTTC+AGG + chr1_3:7064636-7064655 None:intergenic 40.0%
TGCCCTCAATGTGTGTATAA+TGG - chr1_3:7064649-7064668 Msa0100600:intron 40.0%
ATAATGGTTGGCATCTTGTC+TGG - chr1_3:7064665-7064684 Msa0100600:intron 40.0%
TGCTGTTCCATATGCTCAAA+TGG - chr1_3:7065001-7065020 Msa0100600:CDS 40.0%
! TATCCCACAAGATGGTTCTG+AGG - chr1_3:7060897-7060916 Msa0100600:three_prime_UTR 45.0%
ATGGCCATTTGCATGCATCA+TGG - chr1_3:7061196-7061215 Msa0100600:three_prime_UTR 45.0%
TGGCCATTTGCATGCATCAT+GGG - chr1_3:7061197-7061216 Msa0100600:three_prime_UTR 45.0%
CATGTAGGATGAGACTACAG+TGG - chr1_3:7061557-7061576 Msa0100600:CDS 45.0%
!! CAGGCTAGCCTAAAGTATCA+TGG - chr1_3:7061705-7061724 Msa0100600:CDS 45.0%
CAAATTGTAGGCAGCGTCTA+CGG + chr1_3:7061734-7061753 None:intergenic 45.0%
GTAGACGCTGCCTACAATTT+GGG - chr1_3:7061733-7061752 Msa0100600:CDS 45.0%
TAGACGCTGCCTACAATTTG+GGG - chr1_3:7061734-7061753 Msa0100600:CDS 45.0%
AAGCAGCTTCCCCAAATTGT+AGG + chr1_3:7061746-7061765 None:intergenic 45.0%
GTAGTTGAAGCACAACTAGG+TGG + chr1_3:7061900-7061919 None:intergenic 45.0%
CCTGTAGTTGAAGCACAACT+AGG + chr1_3:7061903-7061922 None:intergenic 45.0%
CCTAGTTGTGCTTCAACTAC+AGG - chr1_3:7061900-7061919 Msa0100600:intron 45.0%
ATCCTCAACTCCGTCCAATA+TGG - chr1_3:7061995-7062014 Msa0100600:CDS 45.0%
ATCCATATTGGACGGAGTTG+AGG + chr1_3:7062000-7062019 None:intergenic 45.0%
ATTTGCCGGATATAGGTCGA+TGG + chr1_3:7062120-7062139 None:intergenic 45.0%
CTCTTATCAGGTGCATTTGC+CGG + chr1_3:7062134-7062153 None:intergenic 45.0%
CAAATGCACCTGATAAGAGG+AGG - chr1_3:7062135-7062154 Msa0100600:intron 45.0%
TGAATTCCTCAGCATCTGTG+GGG + chr1_3:7062166-7062185 None:intergenic 45.0%
GTTGAATTCCTCAGCATCTG+TGG + chr1_3:7062168-7062187 None:intergenic 45.0%
!!! AACTTTTTCCTGGAGGTGCT+AGG + chr1_3:7062194-7062213 None:intergenic 45.0%
!! TTTGGTGCTGGAATCTTCTG+TGG - chr1_3:7062466-7062485 Msa0100600:intron 45.0%
ATCTTGGGAGCAAATGCTTG+TGG + chr1_3:7062580-7062599 None:intergenic 45.0%
GCTGCACATGGTACAATCTT+GGG + chr1_3:7062595-7062614 None:intergenic 45.0%
AGCTGCACATGGTACAATCT+TGG + chr1_3:7062596-7062615 None:intergenic 45.0%
ACTTAAAAGTTGTGCTGGGC+TGG + chr1_3:7063127-7063146 None:intergenic 45.0%
!! TAGGGTTTGAGTTGAGGTTC+TGG + chr1_3:7063175-7063194 None:intergenic 45.0%
TCTAGCATTCTACCTGGACT+TGG + chr1_3:7063205-7063224 None:intergenic 45.0%
TCCAGGTAGAATGCTAGAGA+TGG - chr1_3:7063207-7063226 Msa0100600:intron 45.0%
ACCATCTCTAGCATTCTACC+TGG + chr1_3:7063211-7063230 None:intergenic 45.0%
!! GCAAAGGGGTGTCATTTGTA+TGG + chr1_3:7063242-7063261 None:intergenic 45.0%
ACTGGCAGCATAAAGCAAAG+GGG + chr1_3:7063256-7063275 None:intergenic 45.0%
GCTGCCAGTAATAATCTCTG+CGG - chr1_3:7063267-7063286 Msa0100600:CDS 45.0%
TGCACCGCAGAGATTATTAC+TGG + chr1_3:7063274-7063293 None:intergenic 45.0%
! TAATCTCTGCGGTGCACTTT+TGG - chr1_3:7063278-7063297 Msa0100600:CDS 45.0%
!! ACAATGGTGTTACAGGTGAG+AGG + chr1_3:7063925-7063944 None:intergenic 45.0%
! GTCCTTTCATTTGTGCCGAT+TGG - chr1_3:7064035-7064054 Msa0100600:CDS 45.0%
TAAAAAACCACGCAGCAGTC+TGG - chr1_3:7064134-7064153 Msa0100600:CDS 45.0%
!! CTATTGGAGAGTTGGTATGG+TGG + chr1_3:7064237-7064256 None:intergenic 45.0%
TACCGCATCTATTGGAGAGT+TGG + chr1_3:7064245-7064264 None:intergenic 45.0%
AAGTTAGCGCTTGGGGTAAT+CGG + chr1_3:7064312-7064331 None:intergenic 45.0%
! GTGGAGGAGAAACTCTCTTT+TGG + chr1_3:7064443-7064462 None:intergenic 45.0%
!! GACTTTAGAATCAGCGCAAG+GGG + chr1_3:7064562-7064581 None:intergenic 45.0%
!! GGACTTTAGAATCAGCGCAA+GGG + chr1_3:7064563-7064582 None:intergenic 45.0%
!! AGGACTTTAGAATCAGCGCA+AGG + chr1_3:7064564-7064583 None:intergenic 45.0%
AGTCCTTTGCAATGGCAATG+AGG - chr1_3:7064578-7064597 Msa0100600:intron 45.0%
TGCAATGGCAATGAGGATTC+GGG - chr1_3:7064585-7064604 Msa0100600:intron 45.0%
CGAGACTCCATTTGAGCATA+TGG + chr1_3:7065011-7065030 None:intergenic 45.0%
! TGGAGTCTCGTCCTTTAAGA+AGG - chr1_3:7065021-7065040 Msa0100600:CDS 45.0%
! GTCTCGTCCTTTAAGAAGGA+TGG - chr1_3:7065025-7065044 Msa0100600:CDS 45.0%
AACACGGCCATCCTTCTTAA+AGG + chr1_3:7065035-7065054 None:intergenic 45.0%
CCTCCCATGATGCATGCAAA+TGG + chr1_3:7061203-7061222 None:intergenic 50.0%
CCATTTGCATGCATCATGGG+AGG - chr1_3:7061200-7061219 Msa0100600:three_prime_UTR 50.0%
CGTAGACGCTGCCTACAATT+TGG - chr1_3:7061732-7061751 Msa0100600:CDS 50.0%
GAAGCTGCTTCCGTTGTTCT+TGG - chr1_3:7061756-7061775 Msa0100600:CDS 50.0%
TTTCCAAGCCACCAGGCATT+GGG - chr1_3:7061844-7061863 Msa0100600:intron 50.0%
AAATGCAACCCAATGCCTGG+TGG + chr1_3:7061855-7061874 None:intergenic 50.0%
CAGGTGCATTTGCCGGATAT+AGG + chr1_3:7062127-7062146 None:intergenic 50.0%
CGGCAAATGCACCTGATAAG+AGG - chr1_3:7062132-7062151 Msa0100600:intron 50.0%
!!! TTTTCCTGGAGGTGCTAGGA+TGG + chr1_3:7062190-7062209 None:intergenic 50.0%
GTTGCACGTCTTAGGTCCAT+TGG + chr1_3:7062325-7062344 None:intergenic 50.0%
AGTGGAACATCAGCTGCACA+TGG + chr1_3:7062607-7062626 None:intergenic 50.0%
! CTTTTGTGCCTAGCTGATGC+CGG + chr1_3:7062741-7062760 None:intergenic 50.0%
GCATCAGCTAGGCACAAAAG+AGG - chr1_3:7062741-7062760 Msa0100600:intron 50.0%
TCGACTGGATGTCGATGTGA+TGG - chr1_3:7062924-7062943 Msa0100600:CDS 50.0%
!! TTCTACCTGGACTTGGTGGT+GGG + chr1_3:7063198-7063217 None:intergenic 50.0%
!! ATTCTACCTGGACTTGGTGG+TGG + chr1_3:7063199-7063218 None:intergenic 50.0%
AGCATTCTACCTGGACTTGG+TGG + chr1_3:7063202-7063221 None:intergenic 50.0%
!! GGTGCACTTTTGGAAGTGGT+GGG - chr1_3:7063288-7063307 Msa0100600:CDS 50.0%
! ACAGGTGAGAGGTGATTTGC+TGG + chr1_3:7063914-7063933 None:intergenic 50.0%
GGCCAATCGGCACAAATGAA+AGG + chr1_3:7064040-7064059 None:intergenic 50.0%
CTGGCGAATACCGCATCTAT+TGG + chr1_3:7064253-7064272 None:intergenic 50.0%
TGCGGTATTCGCCAGTTATC+TGG - chr1_3:7064258-7064277 Msa0100600:intron 50.0%
GCGGTATTCGCCAGTTATCT+GGG - chr1_3:7064259-7064278 Msa0100600:intron 50.0%
CGGTATTCGCCAGTTATCTG+GGG - chr1_3:7064260-7064279 Msa0100600:intron 50.0%
GGTATTCGCCAGTTATCTGG+GGG - chr1_3:7064261-7064280 Msa0100600:intron 50.0%
CTCCACAGAGCCATCTACTT+CGG - chr1_3:7064457-7064476 Msa0100600:intron 50.0%
! ATCCGAAGTAGATGGCTCTG+TGG + chr1_3:7064462-7064481 None:intergenic 50.0%
CAGAGCCATCTACTTCGGAT+TGG - chr1_3:7064462-7064481 Msa0100600:intron 50.0%
ATTGGATCAAGCTCCTCAGG+TGG - chr1_3:7064480-7064499 Msa0100600:intron 50.0%
TCCTCAGGTGGCTTGAAAAG+TGG - chr1_3:7064492-7064511 Msa0100600:intron 50.0%
!! AGAGGGAGGTGTCACAGAAA+TGG + chr1_3:7064765-7064784 None:intergenic 50.0%
GTGACAGTTTCCAAGCCACC+AGG - chr1_3:7061837-7061856 Msa0100600:intron 55.0%
GTTTCCAAGCCACCAGGCAT+TGG - chr1_3:7061843-7061862 Msa0100600:intron 55.0%
TCAACCATCCTAGCACCTCC+AGG - chr1_3:7062183-7062202 Msa0100600:intron 55.0%
GCTGGAATCTTCTGTGGCGA+CGG - chr1_3:7062472-7062491 Msa0100600:intron 55.0%
TGACAACACCGGCATCAGCT+AGG - chr1_3:7062730-7062749 Msa0100600:intron 55.0%
GCTAACGTTGGATGCTCGAC+TGG - chr1_3:7062909-7062928 Msa0100600:CDS 55.0%
!! GGTGGGTAGGGTTTGAGTTG+AGG + chr1_3:7063181-7063200 None:intergenic 55.0%
!! CTGCGGTGCACTTTTGGAAG+TGG - chr1_3:7063284-7063303 Msa0100600:CDS 55.0%
!! CGGTGCACTTTTGGAAGTGG+TGG - chr1_3:7063287-7063306 Msa0100600:CDS 55.0%
ACATCCACATGAGGGGAGAG+TGG - chr1_3:7063714-7063733 Msa0100600:CDS 55.0%
CATCCACATGAGGGGAGAGT+GGG - chr1_3:7063715-7063734 Msa0100600:CDS 55.0%
TTTGTCCAGCCAAGGCAAGC+AGG - chr1_3:7064068-7064087 Msa0100600:CDS 55.0%
TTGTCCAGCCAAGGCAAGCA+GGG - chr1_3:7064069-7064088 Msa0100600:CDS 55.0%
ACTTTGCACCCTGCTTGCCT+TGG + chr1_3:7064080-7064099 None:intergenic 55.0%
GAAGAGAGCCCCCAGATAAC+TGG + chr1_3:7064272-7064291 None:intergenic 55.0%
TATCTGGGGGCTCTCTTCGT+TGG - chr1_3:7064274-7064293 Msa0100600:intron 55.0%
! CGAAGTAGATGGCTCTGTGG+AGG + chr1_3:7064459-7064478 None:intergenic 55.0%
! CGGATTGGATCAAGCTCCTC+AGG - chr1_3:7064477-7064496 Msa0100600:intron 55.0%
!!! GCCACTTTTCAAGCCACCTG+AGG + chr1_3:7064496-7064515 None:intergenic 55.0%
CAGGTGGCTTGAAAAGTGGC+AGG - chr1_3:7064496-7064515 Msa0100600:intron 55.0%
GAATCAGCGCAAGGGGTCAA+CGG + chr1_3:7064555-7064574 None:intergenic 55.0%
CAACCCAATGCCTGGTGGCT+TGG + chr1_3:7061850-7061869 None:intergenic 60.0%
GGGCGTACCCTCCTCTTATC+AGG + chr1_3:7062146-7062165 None:intergenic 60.0%
GGTTGTGCTTGCGAAGGCTG+TGG - chr1_3:7062493-7062512 Msa0100600:intron 60.0%
!! CCTGGACTTGGTGGTGGGTA+GGG + chr1_3:7063193-7063212 None:intergenic 60.0%
!! ACCTGGACTTGGTGGTGGGT+AGG + chr1_3:7063194-7063213 None:intergenic 60.0%
GAATGTGCCAGACTGCTGCG+TGG + chr1_3:7064144-7064163 None:intergenic 60.0%
GGTACGCCCCACAGATGCTG+AGG - chr1_3:7062157-7062176 Msa0100600:intron 65.0%
GGCGACGGTTGTGCTTGCGA+AGG - chr1_3:7062487-7062506 Msa0100600:intron 65.0%
CCCTACCCACCACCAAGTCC+AGG - chr1_3:7063190-7063209 Msa0100600:intron 65.0%
GCACCCACTCTCCCCTCATG+TGG + chr1_3:7063721-7063740 None:intergenic 65.0%
TGCACCCTGCTTGCCTTGGC+TGG + chr1_3:7064076-7064095 None:intergenic 65.0%
GGGGTCAACGGCGGGAATGA+AGG + chr1_3:7064543-7064562 None:intergenic 65.0%
TCAGCGCAAGGGGTCAACGG+CGG + chr1_3:7064552-7064571 None:intergenic 65.0%
GGGGGCTCTCTTCGTTGGCG+CGG - chr1_3:7064279-7064298 Msa0100600:intron 70.0%
CAGCGCAAGGGGTCAACGGC+GGG + chr1_3:7064551-7064570 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 7060817 7065061 7060817 ID=Msa0100600;Name=Msa0100600
chr1_3 mRNA 7060817 7065061 7060817 ID=Msa0100600-mRNA-1;Parent=Msa0100600;Name=Msa0100600-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.5|0.44|1|0.75|0.88|9|429|570
chr1_3 exon 7060817 7061801 7060817 ID=Msa0100600-mRNA-1:exon:2753;Parent=Msa0100600-mRNA-1
chr1_3 exon 7061921 7062089 7061921 ID=Msa0100600-mRNA-1:exon:2752;Parent=Msa0100600-mRNA-1
chr1_3 exon 7062903 7062969 7062903 ID=Msa0100600-mRNA-1:exon:2751;Parent=Msa0100600-mRNA-1
chr1_3 exon 7063063 7063161 7063063 ID=Msa0100600-mRNA-1:exon:2750;Parent=Msa0100600-mRNA-1
chr1_3 exon 7063242 7063425 7063242 ID=Msa0100600-mRNA-1:exon:2749;Parent=Msa0100600-mRNA-1
chr1_3 exon 7063508 7063579 7063508 ID=Msa0100600-mRNA-1:exon:2748;Parent=Msa0100600-mRNA-1
chr1_3 exon 7063668 7063899 7063668 ID=Msa0100600-mRNA-1:exon:2747;Parent=Msa0100600-mRNA-1
chr1_3 exon 7063939 7064170 7063939 ID=Msa0100600-mRNA-1:exon:2746;Parent=Msa0100600-mRNA-1
chr1_3 exon 7064960 7065061 7064960 ID=Msa0100600-mRNA-1:exon:2745;Parent=Msa0100600-mRNA-1
chr1_3 CDS 7064960 7065061 7064960 ID=Msa0100600-mRNA-1:cds;Parent=Msa0100600-mRNA-1
chr1_3 CDS 7063939 7064170 7063939 ID=Msa0100600-mRNA-1:cds;Parent=Msa0100600-mRNA-1
chr1_3 CDS 7063668 7063899 7063668 ID=Msa0100600-mRNA-1:cds;Parent=Msa0100600-mRNA-1
chr1_3 CDS 7063508 7063579 7063508 ID=Msa0100600-mRNA-1:cds;Parent=Msa0100600-mRNA-1
chr1_3 CDS 7063242 7063425 7063242 ID=Msa0100600-mRNA-1:cds;Parent=Msa0100600-mRNA-1
chr1_3 CDS 7063063 7063161 7063063 ID=Msa0100600-mRNA-1:cds;Parent=Msa0100600-mRNA-1
chr1_3 CDS 7062903 7062969 7062903 ID=Msa0100600-mRNA-1:cds;Parent=Msa0100600-mRNA-1
chr1_3 CDS 7061921 7062089 7061921 ID=Msa0100600-mRNA-1:cds;Parent=Msa0100600-mRNA-1
chr1_3 CDS 7061246 7061801 7061246 ID=Msa0100600-mRNA-1:cds;Parent=Msa0100600-mRNA-1
chr1_3 three_prime_UTR 7060817 7061245 7060817 ID=Msa0100600-mRNA-1:three_prime_utr;Parent=Msa0100600-mRNA-1
Gene Sequence

>Msa0100600

ATGCCTGATCCTATCCAGGTTGTTAAGGAATTTGAAAATTGCAGTGAGATGGTGTCATCCTCACAAGTAAATTCAGAGAATATCCCACAAGATGGTTCTGAGGCTAGCCTAAAGTATCATGGCATCCGTAGACGCTGCCTACAATTTGGGGAAGCTGCTTCCGTTGTTCTTGGAAGTAATAAGTCTCATGTGAAATTGAATACAACTTCAAGCAACGCAAAAATGGTTTCTGTGACAGTTTCCAAGCCACCAGGCATTGGGTTGCATTTAAATAGCATTATAAATGCAATGCCACCTAGTTGTGCTTCAACTACAGGTGTGAGATTATCAGATGTGGAAAACGTGGCAAGATCCTCAACTCCGTCCAATATGGATGATCAATCTTTTATTGATACTAAGAATGAGAGCCATGAAACTGATGCTTCAGTAGTTGCAGATTCTTTCATTTCCGAGTCTCCTATCTTGACAGAATCCATCGACCTATATCCGGCAAATGCACCTGATAAGAGGAGGGTACGCCCCACAGATGCTGAGGAATTCAACCATCCTAGCACCTCCAGGAAAAAGAAGAAAACAAGTACTGATGATGCCAATGGACCTAAGACGTGCAACTGTAAGAAGAGTAAATGTTTGAAACTTTACTGTGATTGTTTTGGTGCTGGAATCTTCTGTGGCGACGGTTGTGCTTGCGAAGGCTGTGGTAACAGAGTAGAATTTCAGGATAAAGTTGTTGAAACAAAACAGCAAATTGAATCCCGTAATCCACAAGCATTTGCTCCCAAGATTGTACCATGTGCAGCTGATGTTCCACTGAATAATATGGAAGATGTGAATATGACAACACCGGCATCAGCTAGGCACAAAAGAGGTTGCAATTGCAAAAGGTCAAAGTGTACAAAAAAATACTGTGAATGTTTTCAGGCTAACGTTGGATGCTCGACTGGATGTCGATGTGATGGATGTATGAATGTCTTTGGCAAGAGAGAAGATTTTGTGGCAATGGAACATGCTTCTAGCAATGAAAGGGAGAGCAACATTGTTGAAGAAGGGTTGGATGACAAACTGCACAAAAGACAGAAAATTGTGACAATCAGGACAGACTTGTTACGACCAGCAAATCACCTCTCACCTGTAACACCATTGTTGCAATGCTCTGACCAAGGCAAGCAGGGTGCAAAGTCTAGACATACTTCTGCAAATTTGACCAAATCTTCTAAAAAACCACGCAGCAGTCTGGCACATTCGAAGTCGAATGATTCTCAAAAGAATGCACCTACACATTCTTCATCTACAGAAAATGAGTGGATAGATCTTCCACCATACCAACTCTCCAATAGATGCGGTATTCGCCAGTTATCTGGGGGCTCTCTTCGTTGGCGCGGTAGTTCACCGATTACCCCAAGCGCTAACTTAGATGATGAATCAGATGGTAAGCTCTTTGACATTATAGAAGATGAAACACCTGATGTATTGAAGGAAGCTTCAACTCCCATCAAGTCTGTGAAAGCAAATTCTCCAATCCAAAAGAGAGTTTCTCCTCCACAGAGCCATCTACTTCGGATTGGATCAAGCTCCTCAGGTGGCTTGAAAAGTGGCAGGAAATTTATATTGCAATCTGTTCCTTCATTCCCGCCGTTGACCCCTTGCGCTGATTCTAAAGTCCTTTGCAATGGCAATGAGGATTCGGGTAACAGCACAGATAAAGTGACATAA
Protein sequence

>Msa0100600

MPDPIQVVKEFENCSEMVSSSQVNSENIPQDGSEASLKYHGIRRRCLQFGEAASVVLGSNKSHVKLNTTSSNAKMVSVTVSKPPGIGLHLNSIINAMPPSCASTTGVRLSDVENVARSSTPSNMDDQSFIDTKNESHETDASVVADSFISESPILTESIDLYPANAPDKRRVRPTDAEEFNHPSTSRKKKKTSTDDANGPKTCNCKKSKCLKLYCDCFGAGIFCGDGCACEGCGNRVEFQDKVVETKQQIESRNPQAFAPKIVPCAADVPLNNMEDVNMTTPASARHKRGCNCKRSKCTKKYCECFQANVGCSTGCRCDGCMNVFGKREDFVAMEHASSNERESNIVEEGLDDKLHKRQKIVTIRTDLLRPANHLSPVTPLLQCSDQGKQGAKSRHTSANLTKSSKKPRSSLAHSKSNDSQKNAPTHSSSTENEWIDLPPYQLSNRCGIRQLSGGSLRWRGSSPITPSANLDDESDGKLFDIIEDETPDVLKEASTPIKSVKANSPIQKRVSPPQSHLLRIGSSSSGGLKSGRKFILQSVPSFPPLTPCADSKVLCNGNEDSGNSTDKVT*