AlfalfaGEDB | Msa0314070

M. sativa cultivar zhongmu-4 / Msa0314070

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009625 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0140096 GO:1901564
PFAM: PF13855.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0314070	XP_039686219.1	95.306	703	24	3	1	701	1	696	0.0	1368

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0314070	sp\|Q9FK63\|CARLK_ARATH	52.167	669	274	15	31	694	34	661	0.0	642

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006110	Msa0314070	0.833361	5.573245e-56	-8.615850e-47
Msa0022000	Msa0314070	0.821527	3.850115e-53	-8.615850e-47
Msa0026910	Msa0314070	0.811034	8.568024e-51	-8.615850e-47
Msa0036140	Msa0314070	0.826170	3.142523e-54	-8.615850e-47
Msa0042550	Msa0314070	0.819307	1.243891e-52	-8.615850e-47
Msa0043980	Msa0314070	0.808390	3.170964e-50	-8.615850e-47
Msa0044260	Msa0314070	0.811283	7.565018e-51	-8.615850e-47
Msa0044330	Msa0314070	0.809306	2.020037e-50	-8.615850e-47
Msa0058600	Msa0314070	0.806330	8.670554e-50	-8.615850e-47
Msa0092410	Msa0314070	0.827543	1.476644e-54	-8.615850e-47

Showing 1 to 10 of 191 entries

Previous1 2 3 4 5…20Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0314070	MtrunA17_Chr2g0284041	95.306	703	24	3	1	701	1	696	0.0	1368
Msa0314070	MtrunA17_Chr8g0379161	60.429	700	196	14	1	695	1	624	0.0	769
Msa0314070	MtrunA17_Chr4g0074031	38.496	678	329	23	87	696	191	848	3.63e-120	379
Msa0314070	MtrunA17_Chr1g0169841	28.107	708	349	20	54	699	485	1094	1.53e-59	217
Msa0314070	MtrunA17_Chr3g0079661	27.454	703	370	20	62	695	561	1192	5.27e-55	204
Msa0314070	MtrunA17_Chr3g0079661	30.457	197	116	6	68	245	422	616	5.11e-11	66.2
Msa0314070	MtrunA17_Chr1g0203631	34.743	331	160	5	394	694	964	1268	8.71e-54	200
Msa0314070	MtrunA17_Chr3g0129391	27.019	718	393	22	50	701	505	1157	5.26e-53	198
Msa0314070	MtrunA17_Chr8g0345561	27.572	729	399	26	24	697	431	1085	5.27e-52	195
Msa0314070	MtrunA17_Chr8g0375511	26.519	724	391	21	51	696	468	1128	1.55e-51	193

Showing 1 to 10 of 548 entries

Previous1 2 3 4 5…55Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0314070	AT5G45800.1	52.167	669	274	15	31	694	34	661	0.0	642
Msa0314070	AT5G45800.2	46.624	474	218	11	24	495	27	467	4.08e-125	381
Msa0314070	AT2G24230.1	36.011	697	346	20	76	698	181	851	8.48e-113	360
Msa0314070	AT5G58150.1	31.586	706	354	21	59	696	139	783	5.76e-83	279
Msa0314070	AT5G07280.1	29.272	714	368	20	32	694	565	1192	1.50e-67	241
Msa0314070	AT1G55610.1	27.971	690	382	20	50	694	518	1137	5.88e-63	228
Msa0314070	AT1G55610.1	31.606	193	118	5	59	245	203	387	2.28e-11	68.2
Msa0314070	AT1G55610.2	27.971	690	382	20	50	694	518	1137	5.88e-63	228
Msa0314070	AT1G55610.2	31.606	193	118	5	59	245	203	387	2.28e-11	68.2
Msa0314070	AT3G13380.1	27.713	682	378	19	58	694	524	1135	5.77e-59	216

Showing 1 to 10 of 533 entries

Previous1 2 3 4 5…54Next

Find 169 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGAACCTTATATCAA+AGG	0.573170	2_4:+9620447	Msa0314070:CDS
AAACTAGGGAAGGGAAATGT+TGG	0.460169	2_4:+9623810	Msa0314070:three_prime_UTR
AAAGATATTCATCCGAGAGC+TGG	0.479240	2_4:+9623502	Msa0314070:CDS
AAAGATTCTCAGCTAGCTGA+AGG	0.571563	2_4:+9621642	Msa0314070:CDS
AAAGGTGGACAAAATGAAGT+GGG	0.551203	2_4:+9623782	Msa0314070:three_prime_UTR
AAATATCAATGAATGCCTTA+TGG	0.273223	2_4:+9623849	Msa0314070:three_prime_UTR
AACAACTTCATCAAGAAATT+TGG	0.156303	2_4:+9621123	Msa0314070:CDS
AACATGCATTTAAGCGTTTG+AGG	0.419387	2_4:+9623639	Msa0314070:three_prime_UTR
AACCCAAAATCAGCAATTCG+AGG	0.573755	2_4:-9623187	None:intergenic
AACCTGAAGGTAGAGTGTTA+AGG	0.522367	2_4:-9620891	None:intergenic

Showing 1 to 10 of 169 entries

Previous1 2 3 4 5…17Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTAGTATTATACTTGAGAGA+AGG	-	chr2_4:9620294-9620313	None:intergenic	30.0%
AGAATCAAGAACCTACAAAA+GGG	-	chr2_4:9620379-9620398	None:intergenic	30.0%
AAGAATCAAGAACCTACAAA+AGG	-	chr2_4:9620380-9620399	None:intergenic	30.0%
TTAGAGTTTCTTGATCTTTC+AGG	+	chr2_4:9620619-9620638	Msa0314070:CDS	30.0%
ACAAAACCCATTTCTCAAAA+TGG	+	chr2_4:9620748-9620767	Msa0314070:CDS	30.0%
ATCTCAATCTTTCACATAAC+AGG	+	chr2_4:9620803-9620822	Msa0314070:CDS	30.0%
TAGATCAAGGTAGTTAAGTT+TGG	-	chr2_4:9620929-9620948	None:intergenic	30.0%
TGTTACAGTTTGATAGATCA+AGG	-	chr2_4:9620942-9620961	None:intergenic	30.0%
CTATCAAACTGTAACATCAT+AGG	+	chr2_4:9620946-9620965	Msa0314070:CDS	30.0%
GAGTGAAGTAAGATAAGAAA+TGG	-	chr2_4:9620983-9621002	None:intergenic	30.0%

Showing 1 to 10 of 239 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	9620133	9623958	9620133	ID=Msa0314070;Name=Msa0314070
chr2_4	mRNA	9620133	9623958	9620133	ID=Msa0314070-mRNA-1;Parent=Msa0314070;Name=Msa0314070-mRNA-1;_AED=0.03;_eAED=0.03;_QI=237\|1\|1\|1\|1\|1\|2\|424\|701
chr2_4	exon	9620133	9621834	9620133	ID=Msa0314070-mRNA-1:exon:3700;Parent=Msa0314070-mRNA-1
chr2_4	exon	9622894	9623958	9622894	ID=Msa0314070-mRNA-1:exon:3701;Parent=Msa0314070-mRNA-1
chr2_4	five_prime_UTR	9620133	9620369	9620133	ID=Msa0314070-mRNA-1:five_prime_utr;Parent=Msa0314070-mRNA-1
chr2_4	CDS	9620370	9621834	9620370	ID=Msa0314070-mRNA-1:cds;Parent=Msa0314070-mRNA-1
chr2_4	CDS	9622894	9623534	9622894	ID=Msa0314070-mRNA-1:cds;Parent=Msa0314070-mRNA-1
chr2_4	three_prime_UTR	9623535	9623958	9623535	ID=Msa0314070-mRNA-1:three_prime_utr;Parent=Msa0314070-mRNA-1

Gene Sequence

>Msa0314070

ATGAAACCCTTTTGTAGGTTCTTGATTCTTCTAACACTTATTACTCTCACACAATCATCAACTTCATGCAACAATGAAAACAAGAACCTTATATCAAAGGCTTTTCAATCTGTCACAGGATTCAACACTTCCTTATTCCAAACAAGAGGCTTCTTCAACTGTTCAAAGGGTCAAATTAACATCATAGAACTTCCATCAAAAAACTTGAGTGGAAACATCTCATGGAGATATCTAAGAAACATGACAAACTTAGAGTTTCTTGATCTTTCAGGTAATTATCTACAAGGTCAAGTACCAAACTGGTTTTGGTCAAGTAGTTCAAAATTATCAACAGTGAATCTCTCAAATAACAGATTTGGTGGAACCATTGCATTCAAAACAAAACCCATTTCTCAAAATGGTTCAACTTTCAAGTTTTCTTCATCACTACAAAATCTCAATCTTTCACATAACAGGTTCACTAATCAACTTCATCTTTCATTGTTTCAAAACCTTGAAATCCTTGACCTTTCAGACAACAACCTTAACACTCTACCTTCAGGTTTTCAAAACCTTACCAAACTTAACTACCTTGATCTATCAAACTGTAACATCATAGGAAACATCAAACCCATTTCTTATCTTACTTCACTCTCTTTCTTAAACCTTTCAAACAACTCTTTGAATGGTAGTTTTCCGTCTGATTTTCCTTCTCTAAACAACCTTAAATTCCTCAACATCTCAAACAACAACTTCAAATCTTCAACTTCTCTAAACAACTTCATCAAGAAATTTGGAAAATCATCGTTCATTCATAATAACTTCAATCTCAACCACTACAATACAACCAAAAAACCAAATATTCATTCAAATTCAATATCAACTATACAACACCACCACCATCAACAACTTCATGTGACAAAGACAAAACCCATTCAAACCAAACCAAAACACAAACAAAAGTCAAAAACAAAAACCATGATTACTGTAGCAGTTACCTCGGCGTCAACGCTTATTTTTGTCGTATTATGTCTATGTGCATTTTTTGGTTACAGAAGAAAAAGAAAACTAGCTCAAAAAAACAAATGGGCAATTTCAATATCAAAACCAATGACAGGATTAACAACAACCGTTAAGATGGAGAAATCTGGACCGTTTGCATTTGAGACAGAATCTGGAACATCATGGGTAGCTGATCTAAAAGAACCAACTTCAGCATCAGTTGTCATGTTTGAGAAACCTTTGATGAACATTAGTTTCATGGATCTTATGAATGCCACGTCATATTTTGGAAAAGATTCTCAGCTAGCTGAAGGTAGATGTGGGCCCGTTTATCGTGCTGTTTTACCTGGGGAGTTACACGTGGCAATTAAGGTTCTTGAAAATGCTAGAGATGTTGATCATGATGATGCTGTTGATACTTTTGTTGACTTGTCCAAGCTTAAACATCCTAATCTCTTGCCACTTTCTGGTTATTGCATCGCAGGGAAGGAAAAGCTAGTGTTGTATGAGTTTATGTCAAACGGAGATTTAGGCAGATGGTTGCACGAGCTACCGACGGGTGAGACTAATGTGGAGGACTGGAGTAGCGACACATGGGAGATTCAAAACGGCACCGGTTCACGAGCATCATCACCAGAAAAAATGGGGTGGCCAACACGACACCGTATCGCTCTAGGAGTAGCGCGTGGTCTAGCATTTCTCCACCATGCAGGATCAAGGCCCGTCGTTCATGGACATCTAGTAACATCAAACGTCCTACTAGCCGATGACTTTGAGCCTCGAATTGCTGATTTTGGGTTTCGAAAATTCGGACAACAATGTCCTCCAAACTGCAGCACCGAAACAGACGTTTACTGTTTCGGTGTAGTGCTTATGGAGCTTCTAACGGGGAAGCCTGGTACAGCGGAGACAGTTGTTTGGGTGAGGAAGCTTGTAAGAGAAAGTCATGGAGTGAGGGCGCTTGACGATAGACTCAAACTAAGTGGTGGTGACTCAGAGAGTCAAATGGTGGAGAGTCTCCGAGTTGCGTACCTTTGTACTGCTGAGTCACCCGGGAAGAGGCCCACTATGCAGCAAGTTTTGGGTCTTCTCAAAGATATTCATCCGAGAGCTGGACTCGAATGA

Protein sequence

>Msa0314070

MKPFCRFLILLTLITLTQSSTSCNNENKNLISKAFQSVTGFNTSLFQTRGFFNCSKGQINIIELPSKNLSGNISWRYLRNMTNLEFLDLSGNYLQGQVPNWFWSSSSKLSTVNLSNNRFGGTIAFKTKPISQNGSTFKFSSSLQNLNLSHNRFTNQLHLSLFQNLEILDLSDNNLNTLPSGFQNLTKLNYLDLSNCNIIGNIKPISYLTSLSFLNLSNNSLNGSFPSDFPSLNNLKFLNISNNNFKSSTSLNNFIKKFGKSSFIHNNFNLNHYNTTKKPNIHSNSISTIQHHHHQQLHVTKTKPIQTKPKHKQKSKTKTMITVAVTSASTLIFVVLCLCAFFGYRRKRKLAQKNKWAISISKPMTGLTTTVKMEKSGPFAFETESGTSWVADLKEPTSASVVMFEKPLMNISFMDLMNATSYFGKDSQLAEGRCGPVYRAVLPGELHVAIKVLENARDVDHDDAVDTFVDLSKLKHPNLLPLSGYCIAGKEKLVLYEFMSNGDLGRWLHELPTGETNVEDWSSDTWEIQNGTGSRASSPEKMGWPTRHRIALGVARGLAFLHHAGSRPVVHGHLVTSNVLLADDFEPRIADFGFRKFGQQCPPNCSTETDVYCFGVVLMELLTGKPGTAETVVWVRKLVRESHGVRALDDRLKLSGGDSESQMVESLRVAYLCTAESPGKRPTMQQVLGLLKDIHPRAGLE*