AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0279790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0279790 MtrunA17_Chr2g0293211 87.912 182 6 1 23 188 197 378 3.37e-108 324
Msa0279790 MtrunA17_Chr2g0293321 58.791 182 58 2 23 188 136 316 1.29e-69 215
Msa0279790 MtrunA17_Chr5g0448701 57.377 183 61 2 23 189 133 314 1.88e-67 209
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0279790 AT1G30660.2 60.894 179 54 1 26 188 129 307 1.25e-70 217
Msa0279790 AT1G30660.3 60.894 179 54 1 26 188 126 304 1.33e-70 217
Msa0279790 AT1G30660.1 60.894 179 54 1 26 188 136 314 1.65e-70 217
Msa0279790 AT1G30680.1 60.335 179 55 1 26 188 211 389 3.48e-67 218

Find 36 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAGCTTGCACGCTGTTTC+GGG 0.208231 2_3:+13895873 Msa0279790:CDS
GAGGAGCTTGCACGCTGTTT+CGG 0.222857 2_3:+13895872 Msa0279790:CDS
CAGGAACACTAATACAATTT+CGG 0.377142 2_3:-13895510 None:intergenic
TTCAAAGGAGTTGCCACCTC+TGG 0.402845 2_3:+13895555 Msa0279790:CDS
GAGACGTCAACAAAAGGTTT+TGG 0.416284 2_3:+13894103 Msa0279790:CDS
CATCAGTTGCAAGGATGATC+CGG 0.418198 2_3:-13895823 None:intergenic
TATGGATTGGATGACATAGT+TGG 0.425805 2_3:+13895338 Msa0279790:CDS
ACTTTAGGTTGAAGGTGAAA+TGG 0.435549 2_3:+13895459 Msa0279790:intron
GGAGTTGCCACCTCTGGAAC+AGG 0.440701 2_3:+13895561 Msa0279790:CDS
GCAGAGAAAATATGATGATC+AGG 0.445811 2_3:+13893649 Msa0279790:CDS
ACTGATGGAGGTGCGCCGTC+AGG 0.454559 2_3:-13895529 None:intergenic
CGATCCACCTGGTCAAGCCT+TGG 0.467064 2_3:+13895847 Msa0279790:CDS
AAGGAGACTCTGCAGAGAAA+TGG 0.475532 2_3:+13893620 Msa0279790:CDS
CGGATCATCCTTGCAACTGA+TGG 0.476266 2_3:+13895824 Msa0279790:CDS
GACTATGTACTTTAGGTTGA+AGG 0.482202 2_3:+13895451 Msa0279790:intron
GCATTCACATATCGTCGTAA+TGG 0.488987 2_3:+13894057 Msa0279790:CDS
GTTTATATTGATAGGCATCC+CGG 0.505691 2_3:+13895804 Msa0279790:intron
TCCTCAGCCAAGGCTTGACC+AGG 0.506819 2_3:-13895854 None:intergenic
ACCTGGTCAAGCCTTGGCTG+AGG 0.537122 2_3:+13895853 Msa0279790:CDS
GCAACTGATGGCGATCCACC+TGG 0.539027 2_3:+13895836 Msa0279790:CDS
AGTACAGAGACGTCAACAAA+AGG 0.539768 2_3:+13894097 Msa0279790:CDS
TTCAGAGCGCTTGATTTCGA+AGG 0.540177 2_3:+13893601 Msa0279790:CDS
GCAGATGCTGGCGTGTCAGA+TGG 0.542409 2_3:+13896719 Msa0279790:intron
GCGTGCAAGCTCCTCAGCCA+AGG 0.555536 2_3:-13895864 None:intergenic
ATCAGTTGCAAGGATGATCC+GGG 0.560824 2_3:-13895822 None:intergenic
AAGCTAGCAATGGAAGAAGC+TGG 0.573143 2_3:+13895484 Msa0279790:CDS
AAGAAGAAGATATATAGAGA+TGG 0.579085 2_3:+13893449 Msa0279790:CDS
ACCTCCATCAGTCTCTTCAA+AGG 0.579181 2_3:+13895540 Msa0279790:CDS
TCAGCCAAGGCTTGACCAGG+TGG 0.600418 2_3:-13895851 None:intergenic
TGAAATGGACAAGCTAGCAA+TGG 0.600784 2_3:+13895474 Msa0279790:CDS
AACTCCTTTGAAGAGACTGA+TGG 0.601053 2_3:-13895544 None:intergenic
GTGGATCGCCATCAGTTGCA+AGG 0.612806 2_3:-13895832 None:intergenic
TTTAGTCGCTTCAATAACTG+AGG 0.648844 2_3:-13893421 None:intergenic
TCCTTTGAAGAGACTGATGG+AGG 0.660045 2_3:-13895541 None:intergenic
AATTGTATTAGTGTTCCTGA+CGG 0.663772 2_3:+13895514 Msa0279790:CDS
TGATTGCAAAGATGCAAATG+AGG 0.670732 2_3:+13896762 Msa0279790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAATAATAATGATGA+GGG - chr2_3:13895281-13895300 None:intergenic 10.0%
!! TAATAATAATAATAATGATG+AGG - chr2_3:13895282-13895301 None:intergenic 10.0%
!!! ATTATTATTATTATTTTTGC+AGG + chr2_3:13895292-13895311 Msa0279790:intron 10.0%
!! ATAGTATAAAATATTTATAC+GGG - chr2_3:13896187-13896206 None:intergenic 10.0%
!!! GTATAAATATTTTATACTAT+AGG + chr2_3:13896187-13896206 Msa0279790:intron 10.0%
!!! TTTTTTTTTTTTTTTCCAAT+AGG - chr2_3:13896290-13896309 None:intergenic 10.0%
!! ATAAAAATAAAGGAATTATT+AGG - chr2_3:13896606-13896625 None:intergenic 10.0%
!!! AATTCCTTTATTTTTATTAA+TGG + chr2_3:13896609-13896628 Msa0279790:intron 10.0%
!!! ATTCCTTTATTTTTATTAAT+GGG + chr2_3:13896610-13896629 Msa0279790:intron 10.0%
!! TCTTTGTTAAATAGAAATTA+GGG - chr2_3:13893873-13893892 None:intergenic 15.0%
!! TTGTGTAATCATATATTTAT+TGG + chr2_3:13894364-13894383 Msa0279790:intron 15.0%
!! ATAATAATAATAATGATGAG+GGG - chr2_3:13895280-13895299 None:intergenic 15.0%
!!! TTCCTTTATTTTTATTAATG+GGG + chr2_3:13896611-13896630 Msa0279790:intron 15.0%
!!! GCTTAAATTTTAGTAGTTAA+GGG - chr2_3:13893677-13893696 None:intergenic 20.0%
!!! AGCTTAAATTTTAGTAGTTA+AGG - chr2_3:13893678-13893697 None:intergenic 20.0%
!!! TTTTTCAAGCGAATAATAAA+TGG - chr2_3:13893815-13893834 None:intergenic 20.0%
!! GTCTTTGTTAAATAGAAATT+AGG - chr2_3:13893874-13893893 None:intergenic 20.0%
!! TGAAAATTTAAATATGCACA+AGG + chr2_3:13893908-13893927 Msa0279790:intron 20.0%
!! GAAAATTTAAATATGCACAA+GGG + chr2_3:13893909-13893928 Msa0279790:intron 20.0%
!!! TCTTTTACAATAATTACGTA+CGG - chr2_3:13894151-13894170 None:intergenic 20.0%
!!! AGAGAATTTTTTGAATCATA+TGG - chr2_3:13894221-13894240 None:intergenic 20.0%
!!! AGTTTGATTTGATATGAAAA+AGG - chr2_3:13895053-13895072 None:intergenic 20.0%
!! TTTATATCAAATGAGAACAA+TGG - chr2_3:13895110-13895129 None:intergenic 20.0%
!!! TTTTCTCTGTTTATATTGAT+AGG + chr2_3:13895796-13895815 Msa0279790:intron 20.0%
!!! TAATTGCTGTTTAAGATTAA+GGG - chr2_3:13896159-13896178 None:intergenic 20.0%
!!! ATAATTGCTGTTTAAGATTA+AGG - chr2_3:13896158-13896177 None:intergenic 20.0%
!! TAATCTTAAACAGCAATTAT+TGG + chr2_3:13896057-13896076 Msa0279790:intron 20.0%
!! TAATCTTAAACAGCAATTAT+TGG - chr2_3:13896057-13896076 None:intergenic 20.0%
!!! ATAATTGCTGTTTAAGATTA+AGG + chr2_3:13896158-13896177 Msa0279790:intron 20.0%
!!! TAATTGCTGTTTAAGATTAA+GGG + chr2_3:13896159-13896178 Msa0279790:intron 20.0%
!!! TTTAGCATTCTTTTGATTTA+TGG + chr2_3:13896220-13896239 Msa0279790:intron 20.0%
!! AGTCCAACAATATAAAATTA+TGG + chr2_3:13896313-13896332 Msa0279790:intron 20.0%
!! AATTATTAGGTTTGGATAAT+AGG - chr2_3:13896593-13896612 None:intergenic 20.0%
!! AATAAAGGAATTATTAGGTT+TGG - chr2_3:13896601-13896620 None:intergenic 20.0%
!!! TCCTTTATTTTTATTAATGG+GGG + chr2_3:13896612-13896631 Msa0279790:intron 20.0%
! AAGAAGAAGATATATAGAGA+TGG + chr2_3:13893449-13893468 Msa0279790:CDS 25.0%
!!! TAAGCTTTATTTGAGATACA+TGG + chr2_3:13893692-13893711 Msa0279790:intron 25.0%
!!! AAGCTTTATTTGAGATACAT+GGG + chr2_3:13893693-13893712 Msa0279790:intron 25.0%
!! AAGCTTCATTTTGAATTTTG+AGG + chr2_3:13893716-13893735 Msa0279790:intron 25.0%
!!! TTCATTTTGAATTTTGAGGT+TGG + chr2_3:13893720-13893739 Msa0279790:intron 25.0%
!!! GAGTTCTTGTTGTTTAATAT+TGG - chr2_3:13893790-13893809 None:intergenic 25.0%
!!! TGTTGTTTTATTGTTCAATC+AGG + chr2_3:13893837-13893856 Msa0279790:intron 25.0%
! TGCATAAGATATAAGATACT+AGG - chr2_3:13893964-13893983 None:intergenic 25.0%
! TGTGAATACAAATATAACAC+AGG - chr2_3:13894013-13894032 None:intergenic 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + chr2_3:13894720-13894739 Msa0279790:intron 25.0%
! TATTAGAGAAACCATTAGAA+AGG + chr2_3:13894849-13894868 Msa0279790:intron 25.0%
! GTTCTATCATAAACCAAATT+TGG - chr2_3:13894898-13894917 None:intergenic 25.0%
!!! TATGAAAAAGGCATTTGATA+AGG - chr2_3:13895041-13895060 None:intergenic 25.0%
!! TGAAAAGATCTTTTATGGAT+TGG + chr2_3:13895325-13895344 Msa0279790:CDS 25.0%
! AATATATTCTAGCAATGTGT+AGG - chr2_3:13895628-13895647 None:intergenic 25.0%
! TAGAGACAAACTACAATTAT+CGG + chr2_3:13896027-13896046 Msa0279790:intron 25.0%
!!! AATGCAACTTAGTTTTTTGA+GGG - chr2_3:13896122-13896141 None:intergenic 25.0%
!!! AAATGCAACTTAGTTTTTTG+AGG - chr2_3:13896123-13896142 None:intergenic 25.0%
! TTGATTTATGGTTATATGAC+AGG + chr2_3:13896232-13896251 Msa0279790:intron 25.0%
!! AGGCCATAATTTTATATTGT+TGG - chr2_3:13896319-13896338 None:intergenic 25.0%
!! CCGTATTAGGTTTTTATATT+GGG - chr2_3:13896406-13896425 None:intergenic 25.0%
! CCCAATATAAAAACCTAATA+CGG + chr2_3:13896403-13896422 Msa0279790:intron 25.0%
!! ACCGTATTAGGTTTTTATAT+TGG - chr2_3:13896407-13896426 None:intergenic 25.0%
! TGAAATGAGTTTATAAAGAG+TGG + chr2_3:13896527-13896546 Msa0279790:intron 25.0%
!!! CCTTTATTTTTATTAATGGG+GGG + chr2_3:13896613-13896632 Msa0279790:intron 25.0%
! AAGAGAAAAATGTTAGTCAT+TGG - chr2_3:13896691-13896710 None:intergenic 25.0%
!! TTGGCTTTTTATCAGTTTGA+AGG - chr2_3:13893771-13893790 None:intergenic 30.0%
GGATTTCATTATGTTGACAA+AGG + chr2_3:13894288-13894307 Msa0279790:intron 30.0%
TCTAAATCCATGAAAAGTTG+AGG + chr2_3:13894327-13894346 Msa0279790:intron 30.0%
CTAAATCCATGAAAAGTTGA+GGG + chr2_3:13894328-13894347 Msa0279790:intron 30.0%
ATTTATTGGAAAGTCCTTCA+CGG + chr2_3:13894378-13894397 Msa0279790:intron 30.0%
!! AAAGTACCACTTAAGTTGAA+AGG + chr2_3:13894509-13894528 Msa0279790:intron 30.0%
AACTTTCCTTTCAACTTAAG+TGG - chr2_3:13894518-13894537 None:intergenic 30.0%
AGTTGAAAGGAAAGTTCTAT+CGG + chr2_3:13894522-13894541 Msa0279790:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG - chr2_3:13894716-13894735 None:intergenic 30.0%
! GTTTCTCTAATAGTTTTCCT+AGG - chr2_3:13894841-13894860 None:intergenic 30.0%
AACCATTAGAAAGGATTTAG+AGG + chr2_3:13894858-13894877 Msa0279790:intron 30.0%
AACCTCTAAATCCTTTCTAA+TGG - chr2_3:13894863-13894882 None:intergenic 30.0%
! TAATGAGTTGGATCCAAATT+TGG + chr2_3:13894882-13894901 Msa0279790:intron 30.0%
TGGTTTATGATAGAACACTA+TGG + chr2_3:13894902-13894921 Msa0279790:intron 30.0%
AGTTGCATAATAGAAACTGT+GGG - chr2_3:13895189-13895208 None:intergenic 30.0%
AAGTTGCATAATAGAAACTG+TGG - chr2_3:13895190-13895209 None:intergenic 30.0%
! GACACTGAAAAGATCTTTTA+TGG + chr2_3:13895320-13895339 Msa0279790:CDS 30.0%
! AACCTTATAATTTGTAGAGC+AGG - chr2_3:13895395-13895414 None:intergenic 30.0%
! GTTTATCGACTATGTACTTT+AGG + chr2_3:13895444-13895463 Msa0279790:intron 30.0%
CAGGAACACTAATACAATTT+CGG - chr2_3:13895513-13895532 None:intergenic 30.0%
AATTGTATTAGTGTTCCTGA+CGG + chr2_3:13895514-13895533 Msa0279790:CDS 30.0%
! TTGAATAAAGCAGTTTTCAC+CGG - chr2_3:13895766-13895785 None:intergenic 30.0%
AAATATTGCTCTTGTGTGTT+TGG - chr2_3:13896085-13896104 None:intergenic 30.0%
TTCCAATAGGAATAAACTAC+AGG - chr2_3:13896277-13896296 None:intergenic 30.0%
ACTCTATATAAGCTCAATTC+AGG - chr2_3:13896339-13896358 None:intergenic 30.0%
TGAATTGAGCTTATATAGAG+TGG + chr2_3:13896338-13896357 Msa0279790:intron 30.0%
TTAACTCATCCTTACAAAAG+TGG - chr2_3:13896382-13896401 None:intergenic 30.0%
CCCCCCATTAATAAAAATAA+AGG - chr2_3:13896616-13896635 None:intergenic 30.0%
TAAGAAACCTACATAAAGAG+AGG - chr2_3:13896647-13896666 None:intergenic 30.0%
!!! TCATCATTCTTCCCTTTTTT+AGG - chr2_3:13896745-13896764 None:intergenic 30.0%
TTTAGTCGCTTCAATAACTG+AGG - chr2_3:13893424-13893443 None:intergenic 35.0%
GCAGAGAAAATATGATGATC+AGG + chr2_3:13893649-13893668 Msa0279790:CDS 35.0%
TAAGCCATCATATTCAAGCT+GGG + chr2_3:13894444-13894463 Msa0279790:intron 35.0%
AAGTAAGTATAGCAGAGATG+AGG + chr2_3:13894612-13894631 Msa0279790:intron 35.0%
AGACTAGACATGATAGGATT+AGG + chr2_3:13894657-13894676 Msa0279790:intron 35.0%
TAGAAAATAGGCGATGGTTT+GGG + chr2_3:13894732-13894751 Msa0279790:intron 35.0%
TTGATCTACTCTTCTTACGA+CGG - chr2_3:13894783-13894802 None:intergenic 35.0%
TCGTAAGAAGAGTAGATCAA+TGG + chr2_3:13894783-13894802 Msa0279790:intron 35.0%
TAAGAAGAGTAGATCAATGG+AGG + chr2_3:13894786-13894805 Msa0279790:intron 35.0%
AGTCAAGTTAAAAGAGGTAG+AGG + chr2_3:13894811-13894830 Msa0279790:intron 35.0%
GGATTTAGAGGTTAATGAGT+TGG + chr2_3:13894870-13894889 Msa0279790:intron 35.0%
ATGTGGGTTCTACATAAGAA+GGG - chr2_3:13895004-13895023 None:intergenic 35.0%
ATTATGCAACTTTAGCATGC+TGG + chr2_3:13895198-13895217 Msa0279790:intron 35.0%
!! TATGGATTGGATGACATAGT+TGG + chr2_3:13895338-13895357 Msa0279790:CDS 35.0%
TGCCTGCTCTACAAATTATA+AGG + chr2_3:13895390-13895409 Msa0279790:intron 35.0%
!! GACTATGTACTTTAGGTTGA+AGG + chr2_3:13895451-13895470 Msa0279790:intron 35.0%
!! ACTTTAGGTTGAAGGTGAAA+TGG + chr2_3:13895459-13895478 Msa0279790:intron 35.0%
ATAAAAAAGACCTGTTCCAG+AGG - chr2_3:13895574-13895593 None:intergenic 35.0%
GTTTATATTGATAGGCATCC+CGG + chr2_3:13895804-13895823 Msa0279790:intron 35.0%
! TGATTGAAAGCATAACTGCA+AGG - chr2_3:13895968-13895987 None:intergenic 35.0%
TGAAACTGCTACTGAAACAA+TGG - chr2_3:13896001-13896020 None:intergenic 35.0%
AATAAACTACAGGCGATGAA+TGG - chr2_3:13896267-13896286 None:intergenic 35.0%
AAAAGTGGTTTAGAAGGTGA+GGG - chr2_3:13896367-13896386 None:intergenic 35.0%
CCTTACAAAAGTGGTTTAGA+AGG - chr2_3:13896373-13896392 None:intergenic 35.0%
!! CCTTCTAAACCACTTTTGTA+AGG + chr2_3:13896370-13896389 Msa0279790:intron 35.0%
!! GCCTTACTTTTATTCCATGT+GGG - chr2_3:13896506-13896525 None:intergenic 35.0%
!! AGCCTTACTTTTATTCCATG+TGG - chr2_3:13896507-13896526 None:intergenic 35.0%
CTTTACAAAACTCGCTTGTA+AGG - chr2_3:13896560-13896579 None:intergenic 35.0%
ATCAAGTCCTCTCTTTATGT+AGG + chr2_3:13896637-13896656 Msa0279790:intron 35.0%
TGATTGCAAAGATGCAAATG+AGG + chr2_3:13896762-13896781 Msa0279790:CDS 35.0%
GCATTCACATATCGTCGTAA+TGG + chr2_3:13894057-13894076 Msa0279790:CDS 40.0%
AGTACAGAGACGTCAACAAA+AGG + chr2_3:13894097-13894116 Msa0279790:CDS 40.0%
! GAGACGTCAACAAAAGGTTT+TGG + chr2_3:13894103-13894122 Msa0279790:CDS 40.0%
TGATGGCTTACATCTGCTTA+TGG - chr2_3:13894434-13894453 None:intergenic 40.0%
GTAAGCCATCATATTCAAGC+TGG + chr2_3:13894443-13894462 Msa0279790:intron 40.0%
GTGGTAAGACTAGACATGAT+AGG + chr2_3:13894651-13894670 Msa0279790:intron 40.0%
CGCACCTATAGTAGAAAAGT+TGG + chr2_3:13894709-13894728 Msa0279790:intron 40.0%
!! AGTTGGTAGAAAATAGGCGA+TGG + chr2_3:13894726-13894745 Msa0279790:intron 40.0%
GTAGAAAATAGGCGATGGTT+TGG + chr2_3:13894731-13894750 Msa0279790:intron 40.0%
GAGGAGAGTCAAGTTAAAAG+AGG + chr2_3:13894805-13894824 Msa0279790:intron 40.0%
TGTGGGTTCTACATAAGAAG+GGG - chr2_3:13895003-13895022 None:intergenic 40.0%
CATGTGGGTTCTACATAAGA+AGG - chr2_3:13895005-13895024 None:intergenic 40.0%
! AGAACCCACATGTCTTTTCT+TGG + chr2_3:13895013-13895032 Msa0279790:intron 40.0%
TGAAATGGACAAGCTAGCAA+TGG + chr2_3:13895474-13895493 Msa0279790:CDS 40.0%
! AACTCCTTTGAAGAGACTGA+TGG - chr2_3:13895547-13895566 None:intergenic 40.0%
CTGTAAAGCTGAACTAAAGC+AGG + chr2_3:13895705-13895724 Msa0279790:intron 40.0%
TTCCACTCCTTTCTATGTTC+CGG + chr2_3:13895744-13895763 Msa0279790:intron 40.0%
! GTTTTCACCGGAACATAGAA+AGG - chr2_3:13895754-13895773 None:intergenic 40.0%
! TGAAAGCATAACTGCAAGGA+TGG - chr2_3:13895964-13895983 None:intergenic 40.0%
CGCCTGTAGTTTATTCCTAT+TGG + chr2_3:13896272-13896291 Msa0279790:intron 40.0%
AAAGTGGTTTAGAAGGTGAG+GGG - chr2_3:13896366-13896385 None:intergenic 40.0%
CAAAAGTGGTTTAGAAGGTG+AGG - chr2_3:13896368-13896387 None:intergenic 40.0%
TATCAGAGCTCCTATCAATC+TGG + chr2_3:13896426-13896445 Msa0279790:intron 40.0%
GGATGTATTGGGAAAAACCA+AGG + chr2_3:13896480-13896499 Msa0279790:intron 40.0%
GCCCACATGGAATAAAAGTA+AGG + chr2_3:13896502-13896521 Msa0279790:intron 40.0%
ACAAAACTCGCTTGTAAGGT+GGG - chr2_3:13896556-13896575 None:intergenic 40.0%
TACAAAACTCGCTTGTAAGG+TGG - chr2_3:13896557-13896576 None:intergenic 40.0%
! TCTTGTTTATCTGCAGATGC+TGG + chr2_3:13896707-13896726 Msa0279790:intron 40.0%
GTGTCAGATGGCCTAAAAAA+GGG + chr2_3:13896731-13896750 Msa0279790:CDS 40.0%
! TTCAGAGCGCTTGATTTCGA+AGG + chr2_3:13893601-13893620 Msa0279790:CDS 45.0%
AAGGAGACTCTGCAGAGAAA+TGG + chr2_3:13893620-13893639 Msa0279790:CDS 45.0%
!! CGTCAACAAAAGGTTTTGGC+AGG + chr2_3:13894107-13894126 Msa0279790:CDS 45.0%
! ACTGAGCCCTCAACTTTTCA+TGG - chr2_3:13894337-13894356 None:intergenic 45.0%
AATATTCAAGCCAGCCGTGA+AGG - chr2_3:13894395-13894414 None:intergenic 45.0%
ACCACCCAGCTTGAATATGA+TGG - chr2_3:13894451-13894470 None:intergenic 45.0%
TTCAAGCTGGGTGGTTGAAA+TGG + chr2_3:13894456-13894475 Msa0279790:intron 45.0%
GTTGAAATGGAGAAGAGCCT+CGG + chr2_3:13894469-13894488 Msa0279790:intron 45.0%
TTGAAATGGAGAAGAGCCTC+GGG + chr2_3:13894470-13894489 Msa0279790:intron 45.0%
CTTATTGCACAAAACACCCG+AGG - chr2_3:13894489-13894508 None:intergenic 45.0%
AGGAAAGTTCTATCGGACAG+CGG + chr2_3:13894529-13894548 Msa0279790:intron 45.0%
TGTTGTATGGTACGGAGTGT+TGG + chr2_3:13894564-13894583 Msa0279790:intron 45.0%
! GTTGTATGGTACGGAGTGTT+GGG + chr2_3:13894565-13894584 Msa0279790:intron 45.0%
TGACACCATTAGAGAGAGAG+TGG + chr2_3:13894682-13894701 Msa0279790:intron 45.0%
GACACCATTAGAGAGAGAGT+GGG + chr2_3:13894683-13894702 Msa0279790:intron 45.0%
ACACCATTAGAGAGAGAGTG+GGG + chr2_3:13894684-13894703 Msa0279790:intron 45.0%
TCTTCTTACGACGGCATCTA+CGG - chr2_3:13894774-13894793 None:intergenic 45.0%
AAAGAGGTAGAGGAAGACCT+AGG + chr2_3:13894821-13894840 Msa0279790:intron 45.0%
! CAAGCCTTATCCCACTAACT+GGG - chr2_3:13894951-13894970 None:intergenic 45.0%
GTGGGTTCTACATAAGAAGG+GGG - chr2_3:13895002-13895021 None:intergenic 45.0%
GGTGCCAAGAAAAGACATGT+GGG - chr2_3:13895020-13895039 None:intergenic 45.0%
AGGTGCCAAGAAAAGACATG+TGG - chr2_3:13895021-13895040 None:intergenic 45.0%
AAGCTAGCAATGGAAGAAGC+TGG + chr2_3:13895484-13895503 Msa0279790:CDS 45.0%
ACCTCCATCAGTCTCTTCAA+AGG + chr2_3:13895540-13895559 Msa0279790:CDS 45.0%
! TCCTTTGAAGAGACTGATGG+AGG - chr2_3:13895544-13895563 None:intergenic 45.0%
AAAAAGACCTGTTCCAGAGG+TGG - chr2_3:13895571-13895590 None:intergenic 45.0%
ATCAGTTGCAAGGATGATCC+GGG - chr2_3:13895825-13895844 None:intergenic 45.0%
CATCAGTTGCAAGGATGATC+CGG - chr2_3:13895826-13895845 None:intergenic 45.0%
AAACTACAGGCGATGAATGG+TGG - chr2_3:13896264-13896283 None:intergenic 45.0%
! AGGAGCTCTGATACCGTATT+AGG - chr2_3:13896419-13896438 None:intergenic 45.0%
! CTTTTATTCCATGTGGGCCT+TGG - chr2_3:13896500-13896519 None:intergenic 45.0%
CGTGTCAGATGGCCTAAAAA+AGG + chr2_3:13896730-13896749 Msa0279790:CDS 45.0%
!! TATAGTATAAAATATTTATA+CGG - chr2_3:13896188-13896207 None:intergenic 5.0%
CCTCGTAAGAGAGTTGACAG+AGG - chr2_3:13894270-13894289 None:intergenic 50.0%
CCTCTGTCAACTCTCTTACG+AGG + chr2_3:13894267-13894286 Msa0279790:intron 50.0%
ATTGGAAAGTCCTTCACGGC+TGG + chr2_3:13894382-13894401 Msa0279790:intron 50.0%
GCCATCATATTCAAGCTGGG+TGG + chr2_3:13894447-13894466 Msa0279790:intron 50.0%
TCCGTACCATACAACATCGC+CGG - chr2_3:13894560-13894579 None:intergenic 50.0%
CAGAGATGAGGATGTTGCGT+TGG + chr2_3:13894624-13894643 Msa0279790:intron 50.0%
AGGATGTTGCGTTGGATGAG+TGG + chr2_3:13894632-13894651 Msa0279790:intron 50.0%
CACCATTAGAGAGAGAGTGG+GGG + chr2_3:13894685-13894704 Msa0279790:intron 50.0%
CTTCTTACGACGGCATCTAC+GGG - chr2_3:13894773-13894792 None:intergenic 50.0%
TATGTAGCCGACCCAGTTAG+TGG + chr2_3:13894937-13894956 Msa0279790:intron 50.0%
ATGTAGCCGACCCAGTTAGT+GGG + chr2_3:13894938-13894957 Msa0279790:intron 50.0%
CCTTATCCCACTAACTGGGT+CGG - chr2_3:13894947-13894966 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAC+TGG - chr2_3:13894952-13894971 None:intergenic 50.0%
CCAGTTAGTGGGATAAGGCT+TGG + chr2_3:13894949-13894968 Msa0279790:intron 50.0%
TTCAAAGGAGTTGCCACCTC+TGG + chr2_3:13895555-13895574 Msa0279790:CDS 50.0%
CACCGGAACATAGAAAGGAG+TGG - chr2_3:13895749-13895768 None:intergenic 50.0%
CGGATCATCCTTGCAACTGA+TGG + chr2_3:13895824-13895843 Msa0279790:CDS 50.0%
AGTTCTATCGGACAGCGGTC+AGG + chr2_3:13894534-13894553 Msa0279790:intron 55.0%
GCCGGCGATGTTGTATGGTA+CGG + chr2_3:13894556-13894575 Msa0279790:intron 55.0%
!! GTATGGTACGGAGTGTTGGG+TGG + chr2_3:13894568-13894587 Msa0279790:intron 55.0%
GACCCCCACTCTCTCTCTAA+TGG - chr2_3:13894690-13894709 None:intergenic 55.0%
CCGACCCAGTTAGTGGGATA+AGG + chr2_3:13894944-13894963 Msa0279790:intron 55.0%
GTGGATCGCCATCAGTTGCA+AGG - chr2_3:13895835-13895854 None:intergenic 55.0%
GAGGAGCTTGCACGCTGTTT+CGG + chr2_3:13895872-13895891 Msa0279790:CDS 55.0%
! AGGAGCTTGCACGCTGTTTC+GGG + chr2_3:13895873-13895892 Msa0279790:CDS 55.0%
!! GGCTTGGTGGCCAGATTGAT+AGG - chr2_3:13896439-13896458 None:intergenic 55.0%
CAATACATCCCCCTCACACC+CGG - chr2_3:13896470-13896489 None:intergenic 55.0%
GGGTGTGAGGGGGATGTATT+GGG + chr2_3:13896469-13896488 Msa0279790:intron 55.0%
GGGAAAAACCAAGGCCCACA+TGG + chr2_3:13896489-13896508 Msa0279790:intron 55.0%
GTCAGGCCGGCGATGTTGTA+TGG + chr2_3:13894551-13894570 Msa0279790:intron 60.0%
!! GGAGTTGCCACCTCTGGAAC+AGG + chr2_3:13895561-13895580 Msa0279790:CDS 60.0%
! GCAACTGATGGCGATCCACC+TGG + chr2_3:13895836-13895855 Msa0279790:CDS 60.0%
CGATCCACCTGGTCAAGCCT+TGG + chr2_3:13895847-13895866 Msa0279790:CDS 60.0%
TCAGCCAAGGCTTGACCAGG+TGG - chr2_3:13895854-13895873 None:intergenic 60.0%
ACCTGGTCAAGCCTTGGCTG+AGG + chr2_3:13895853-13895872 Msa0279790:CDS 60.0%
TCCTCAGCCAAGGCTTGACC+AGG - chr2_3:13895857-13895876 None:intergenic 60.0%
CGGGTGTGAGGGGGATGTAT+TGG + chr2_3:13896468-13896487 Msa0279790:intron 60.0%
GCAGATGCTGGCGTGTCAGA+TGG + chr2_3:13896719-13896738 Msa0279790:intron 60.0%
CTATCGGACAGCGGTCAGGC+CGG + chr2_3:13894538-13894557 Msa0279790:intron 65.0%
! ACTGATGGAGGTGCGCCGTC+AGG - chr2_3:13895532-13895551 None:intergenic 65.0%
GCGTGCAAGCTCCTCAGCCA+AGG - chr2_3:13895867-13895886 None:intergenic 65.0%
GCCACCAAGCCCCATAGTGC+CGG + chr2_3:13896448-13896467 Msa0279790:intron 65.0%
CCACCAAGCCCCATAGTGCC+GGG + chr2_3:13896449-13896468 Msa0279790:intron 65.0%
ACACCCGGCACTATGGGGCT+TGG - chr2_3:13896455-13896474 None:intergenic 65.0%
CCCTCACACCCGGCACTATG+GGG - chr2_3:13896460-13896479 None:intergenic 65.0%
! CCCCATAGTGCCGGGTGTGA+GGG + chr2_3:13896457-13896476 Msa0279790:intron 65.0%
CCCCTCACACCCGGCACTAT+GGG - chr2_3:13896461-13896480 None:intergenic 65.0%
! CCCATAGTGCCGGGTGTGAG+GGG + chr2_3:13896458-13896477 Msa0279790:intron 65.0%
! CCATAGTGCCGGGTGTGAGG+GGG + chr2_3:13896459-13896478 Msa0279790:intron 65.0%
CCCGGCACTATGGGGCTTGG+TGG - chr2_3:13896452-13896471 None:intergenic 70.0%
! GCCCCATAGTGCCGGGTGTG+AGG + chr2_3:13896456-13896475 Msa0279790:intron 70.0%
CCCCCTCACACCCGGCACTA+TGG - chr2_3:13896462-13896481 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 13893405 13896795 13893405 ID=Msa0279790;Name=Msa0279790
chr2_3 mRNA 13893405 13896795 13893405 ID=Msa0279790-mRNA-1;Parent=Msa0279790;Name=Msa0279790-mRNA-1;_AED=0.89;_eAED=0.93;_QI=0|0|0|0.14|1|1|7|0|190
chr2_3 exon 13893405 13893470 13893405 ID=Msa0279790-mRNA-1:exon:5899;Parent=Msa0279790-mRNA-1
chr2_3 exon 13893587 13893670 13893587 ID=Msa0279790-mRNA-1:exon:5900;Parent=Msa0279790-mRNA-1
chr2_3 exon 13894048 13894128 13894048 ID=Msa0279790-mRNA-1:exon:5901;Parent=Msa0279790-mRNA-1
chr2_3 exon 13895314 13895379 13895314 ID=Msa0279790-mRNA-1:exon:5902;Parent=Msa0279790-mRNA-1
chr2_3 exon 13895466 13895582 13895466 ID=Msa0279790-mRNA-1:exon:5903;Parent=Msa0279790-mRNA-1
chr2_3 exon 13895818 13895903 13895818 ID=Msa0279790-mRNA-1:exon:5904;Parent=Msa0279790-mRNA-1
chr2_3 exon 13896723 13896795 13896723 ID=Msa0279790-mRNA-1:exon:5905;Parent=Msa0279790-mRNA-1
chr2_3 CDS 13893405 13893470 13893405 ID=Msa0279790-mRNA-1:cds;Parent=Msa0279790-mRNA-1
chr2_3 CDS 13893587 13893670 13893587 ID=Msa0279790-mRNA-1:cds;Parent=Msa0279790-mRNA-1
chr2_3 CDS 13894048 13894128 13894048 ID=Msa0279790-mRNA-1:cds;Parent=Msa0279790-mRNA-1
chr2_3 CDS 13895314 13895379 13895314 ID=Msa0279790-mRNA-1:cds;Parent=Msa0279790-mRNA-1
chr2_3 CDS 13895466 13895582 13895466 ID=Msa0279790-mRNA-1:cds;Parent=Msa0279790-mRNA-1
chr2_3 CDS 13895818 13895903 13895818 ID=Msa0279790-mRNA-1:cds;Parent=Msa0279790-mRNA-1
chr2_3 CDS 13896723 13896795 13896723 ID=Msa0279790-mRNA-1:cds;Parent=Msa0279790-mRNA-1
Gene Sequence

>Msa0279790

ATGGCATCATTTGCTACCTCAGTTATTGAAGCGACTAAATTGCTAAGAAGAAGATATATAGAGATGCTGGTCGCATATTTTTCAGAGCGCTTGATTTCGAAGGAGACTCTGCAGAGAAATGGTGTCATGCAGAGAAAATATGATGATCAGATTGTTATTGCATTCACATATCGTCGTAATGGAGCGCTTATTAGTTGCAAGTACAGAGACGTCAACAAAAGGTTTTGGCAGGAAGCTGACACTGAAAAGATCTTTTATGGATTGGATGACATAGTTGGAGAAAGTGATGTTATCATTGTTGAAGGTGAAATGGACAAGCTAGCAATGGAAGAAGCTGGCTTCCGAAATTGTATTAGTGTTCCTGACGGCGCACCTCCATCAGTCTCTTCAAAGGAGTTGCCACCTCTGGAACAGGCATCCCGGATCATCCTTGCAACTGATGGCGATCCACCTGGTCAAGCCTTGGCTGAGGAGCTTGCACGCTGTTTCGGGAAAGAAAAATGCTGGCGTGTCAGATGGCCTAAAAAAGGGAAGAATGATGATTGCAAAGATGCAAATGAGGTTAGATATTGA

Protein sequence

>Msa0279790

MASFATSVIEATKLLRRRYIEMLVAYFSERLISKETLQRNGVMQRKYDDQIVIAFTYRRNGALISCKYRDVNKRFWQEADTEKIFYGLDDIVGESDVIIVEGEMDKLAMEEAGFRNCISVPDGAPPSVSSKELPPLEQASRIILATDGDPPGQALAEELARCFGKEKCWRVRWPKKGKNDDCKDANEVRY*