AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0958970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0958970 MtrunA17_Chr6g0476651 97.015 134 4 0 1 134 1 134 1.13e-88 253
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0958970 AT4G10330.1 59.398 133 46 1 2 134 6 130 1.81e-43 139

Find 60 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCAACAATTTAGGGAAAT+TGG 0.109176 6_3:-75230024 Msa0958970:CDS
TGGAGAGTTGCAATGGTTTC+TGG 0.128821 6_3:-75224182 Msa0958970:three_prime_UTR
TCATGTGGTGGCAACATAAT+TGG 0.161611 6_3:-75224436 Msa0958970:three_prime_UTR
CCTGGCTTACAAGTTGGTTT+TGG 0.179994 6_3:-75225655 Msa0958970:CDS
GTGTTGAAGTCCAACAATTT+AGG 0.181227 6_3:-75230032 Msa0958970:CDS
CTGATTTCAGGAGTGGGTTT+TGG 0.201493 6_3:-75225688 Msa0958970:intron
GTTGCAATGGTTTCTGGATT+TGG 0.279662 6_3:-75224176 Msa0958970:three_prime_UTR
GCTGGATGTGGTGTTGGTTT+AGG 0.284383 6_3:-75225625 Msa0958970:CDS
TGTTGAAGTCCAACAATTTA+GGG 0.284496 6_3:-75230031 Msa0958970:CDS
CCACACGACTCATGAGTATT+TGG 0.291960 6_3:-75230221 None:intergenic
GCTGGTTGTGGGCTCGGTTT+TGG 0.294191 6_3:-75229981 Msa0958970:CDS
TGCAACTCTCCATTTGAATA+TGG 0.294623 6_3:+75224193 None:intergenic
GGGAAATTGGGACCTGGATT+TGG 0.294935 6_3:-75230011 Msa0958970:CDS
GTTGGTGCTGGTTGTGGGCT+CGG 0.312526 6_3:-75229987 Msa0958970:CDS
TTTGGTGTTGGTGCTGGTTG+TGG 0.315763 6_3:-75229993 Msa0958970:CDS
CCTGGATTTGGTGTTGGTGC+TGG 0.317243 6_3:-75229999 Msa0958970:CDS
TGTGGTGTTGGTTTAGGATT+TGG 0.335566 6_3:-75225619 Msa0958970:CDS
TCGTGTTTGATTGCTTTGAT+TGG 0.337687 6_3:+75230183 None:intergenic
TTTGGTGCTGGATGTGGTGT+TGG 0.360496 6_3:-75225631 Msa0958970:CDS
AACTTGAAATCAAACATATA+TGG 0.364719 6_3:+75224267 None:intergenic
TTGGTGTTGGTGCTGGTTGT+GGG 0.368594 6_3:-75229992 Msa0958970:CDS
CATGATTTAGTAGAAATTAC+TGG 0.380784 6_3:+75224454 None:intergenic
TTTGGGTTTGGTGCTGGATG+TGG 0.381909 6_3:-75225637 Msa0958970:CDS
TCCCAATTTCCCTAAATTGT+TGG 0.382043 6_3:+75230022 None:intergenic
TTACTCATTAATAATGCTTC+CGG 0.386656 6_3:+75225522 None:intergenic
TCCAACAATTTAGGGAAATT+GGG 0.389246 6_3:-75230023 Msa0958970:CDS
GTTGGTTTAGGATTTGGTTA+TGG 0.395591 6_3:-75225613 Msa0958970:CDS
ACTTGTAAGCCAGGAATTCC+AGG 0.397706 6_3:+75225664 None:intergenic
ATTTGGTTATGGCGTGGGAA+AGG 0.406178 6_3:-75225602 Msa0958970:CDS
TTTGGTTATGGCGTGGGAAA+GGG 0.412592 6_3:-75225601 Msa0958970:CDS
CATGTGGTGGCAACATAATT+GGG 0.418742 6_3:-75224435 Msa0958970:three_prime_UTR
CGTGTTTGATTGCTTTGATT+GGG 0.434134 6_3:+75230184 None:intergenic
GGAATTCCTGGCTTACAAGT+TGG 0.488710 6_3:-75225661 Msa0958970:CDS
TTGGGACCTGGATTTGGTGT+TGG 0.496036 6_3:-75230005 Msa0958970:CDS
TTTGGCATCGGTCTTCTTGG+AGG 0.496538 6_3:-75229963 Msa0958970:intron
TTAGGATTTGGTTATGGCGT+GGG 0.497804 6_3:-75225607 Msa0958970:CDS
ATTGAAAGAAAGATGAGAAA+CGG 0.505163 6_3:-75230089 Msa0958970:exon
AAATTGTTGGACTTCAACAC+TGG 0.515790 6_3:+75230035 None:intergenic
TATCGAAGGTACTCAAATGT+TGG 0.522594 6_3:-75225562 Msa0958970:CDS
GAGAAACGGTGATGATGAGA+AGG 0.533210 6_3:-75230075 Msa0958970:CDS
CCAAAACCAACTTGTAAGCC+AGG 0.540310 6_3:+75225655 None:intergenic
ATATATGTTTGATTTCAAGT+TGG 0.540942 6_3:-75224265 Msa0958970:three_prime_UTR
ATTCAAATGGAGAGTTGCAA+TGG 0.543317 6_3:-75224189 Msa0958970:three_prime_UTR
ATGCTTCCGGAACCACGAAA+AGG 0.546483 6_3:+75225535 None:intergenic
TGTGGTGTGCCATATTCAAA+TGG 0.556258 6_3:-75224202 Msa0958970:three_prime_UTR
TCGACAAGTGGAGAAGATGA+TGG 0.558424 6_3:-75224527 Msa0958970:exon
TTTAGGATTTGGTTATGGCG+TGG 0.563463 6_3:-75225608 Msa0958970:CDS
AAATCAAACATATATGGCAG+TGG 0.570531 6_3:+75224273 None:intergenic
GGATGATATTACTGCACTTG+TGG 0.571418 6_3:-75224601 Msa0958970:CDS
AGAAACGGTGATGATGAGAA+GGG 0.603548 6_3:-75230074 Msa0958970:CDS
CCAGCACCAACACCAAATCC+AGG 0.609900 6_3:+75229999 None:intergenic
AATTTAGGGAAATTGGGACC+TGG 0.612696 6_3:-75230017 Msa0958970:CDS
TTGCACAAGATGAGTATCGA+AGG 0.629149 6_3:-75225576 Msa0958970:CDS
GTAATTTCTACTAAATCATG+TGG 0.630561 6_3:-75224451 Msa0958970:three_prime_UTR
CATCAAGAGAAATCGACAAG+TGG 0.633315 6_3:-75224539 Msa0958970:CDS
ATTTCTACTAAATCATGTGG+TGG 0.633976 6_3:-75224448 Msa0958970:three_prime_UTR
CTCATGAGTATTTGGTACTG+TGG 0.642829 6_3:-75230213 Msa0958970:five_prime_UTR
CTTGTAAGCCAGGAATTCCA+GGG 0.653758 6_3:+75225665 None:intergenic
ATGATGAGAAGGGTTTGCTG+TGG 0.658773 6_3:-75230064 Msa0958970:CDS
ACTGTCTTGAAAAGACTGTG+TGG 0.738139 6_3:-75224220 Msa0958970:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAGATAGAAATTATAT+CGG + chr6_3:75229342-75229361 None:intergenic 10.0%
!! TATATTTAAAAATTATGAGA+TGG - chr6_3:75229445-75229464 Msa0958970:intron 10.0%
!!! AATTAATTTTAAAAATGAGT+TGG + chr6_3:75229708-75229727 None:intergenic 10.0%
!! CTAAAAAATTATAAATGTTA+CGG + chr6_3:75229986-75230005 None:intergenic 10.0%
!!! GTAACATTTATAATTTTTTA+GGG - chr6_3:75229985-75230004 Msa0958970:CDS 10.0%
!! TCATTTACTTAAATTACTAA+CGG + chr6_3:75224680-75224699 None:intergenic 15.0%
!!! ATAAAACTTTTCTAACAAAA+GGG + chr6_3:75224941-75224960 None:intergenic 15.0%
!!! AATAAAACTTTTCTAACAAA+AGG + chr6_3:75224942-75224961 None:intergenic 15.0%
!!! TCACTTTTTTAAATTACTAA+TGG + chr6_3:75225156-75225175 None:intergenic 15.0%
!!! AATAAACTTTTCTATCAAAA+GGG + chr6_3:75225343-75225362 None:intergenic 15.0%
!!! TCATTTTCTTAAATTACTAA+TGG + chr6_3:75225473-75225492 None:intergenic 15.0%
!!! TGAAAATTTGAAACTTTAAT+TGG + chr6_3:75225809-75225828 None:intergenic 15.0%
!!! GAGATAATTATTTTTTATTG+AGG - chr6_3:75226701-75226720 Msa0958970:intron 15.0%
!! AATGATACTATTATTAACTA+CGG + chr6_3:75227091-75227110 None:intergenic 15.0%
!! ATATATCATATATGGAAATA+TGG + chr6_3:75228055-75228074 None:intergenic 15.0%
!! ATAAAATAAAAATGTTCCAT+AGG - chr6_3:75229293-75229312 Msa0958970:intron 15.0%
!! TAAAATAAAAATGTTCCATA+GGG - chr6_3:75229294-75229313 Msa0958970:intron 15.0%
!! ATTGTACATGAAAAAATTAA+TGG + chr6_3:75229857-75229876 None:intergenic 15.0%
!!! CGTAACATTTATAATTTTTT+AGG - chr6_3:75229984-75230003 Msa0958970:CDS 15.0%
!!! AGAAAACTTTTCTAACAAAA+GGG + chr6_3:75224462-75224481 None:intergenic 20.0%
!!! AAGAAAACTTTTCTAACAAA+AGG + chr6_3:75224463-75224482 None:intergenic 20.0%
!!! TTTTCTTGTTTGATTATAGT+TGG - chr6_3:75224476-75224495 Msa0958970:three_prime_UTR 20.0%
!!! AGAAAACTTTTCATACAAAA+GGG + chr6_3:75224538-75224557 None:intergenic 20.0%
!!! AAGAAAACTTTTCATACAAA+AGG + chr6_3:75224539-75224558 None:intergenic 20.0%
!!! CAATAAACTTTTCTATCAAA+AGG + chr6_3:75225344-75225363 None:intergenic 20.0%
!! GTTTATTGTTTGATTATAGT+TGG - chr6_3:75225356-75225375 Msa0958970:intron 20.0%
!! GCAAAAAATTTCTAACAAAT+GGG + chr6_3:75225688-75225707 None:intergenic 20.0%
!! AGCAAAAAATTTCTAACAAA+TGG + chr6_3:75225689-75225708 None:intergenic 20.0%
!! TATTCAAGCAAATAAACATT+GGG + chr6_3:75226029-75226048 None:intergenic 20.0%
!! ATATTCAAGCAAATAAACAT+TGG + chr6_3:75226030-75226049 None:intergenic 20.0%
!! TTATTTGCTTGAATATGATA+TGG - chr6_3:75226034-75226053 Msa0958970:intron 20.0%
!! TAAATCAGTGTTATGAAATT+TGG + chr6_3:75226230-75226249 None:intergenic 20.0%
!!! TTCATAACACTGATTTAAAT+TGG - chr6_3:75226233-75226252 Msa0958970:intron 20.0%
!!! TCATAACACTGATTTAAATT+GGG - chr6_3:75226234-75226253 Msa0958970:intron 20.0%
!!! TTTTGATTTTGTGTTTTTGA+CGG - chr6_3:75226319-75226338 Msa0958970:intron 20.0%
!!! TTGATAGTTCTTTTTAGTTT+AGG - chr6_3:75226477-75226496 Msa0958970:intron 20.0%
!!! TTTAAGATTCAACTTGTAAA+CGG + chr6_3:75227157-75227176 None:intergenic 20.0%
!! TCTATGAACTAATTGAAAAA+AGG + chr6_3:75227469-75227488 None:intergenic 20.0%
!!! GTTTTATTGCAGAAAAATAA+TGG + chr6_3:75227733-75227752 None:intergenic 20.0%
!! TCTAAAGACACATATAAATT+TGG - chr6_3:75227864-75227883 Msa0958970:intron 20.0%
!! AAGTAGCTATATATCATATA+TGG + chr6_3:75228063-75228082 None:intergenic 20.0%
!!! AACCTTTCTATTTTATTTGT+TGG - chr6_3:75228925-75228944 Msa0958970:intron 20.0%
!! AAAATAAAAATGTTCCATAG+GGG - chr6_3:75229295-75229314 Msa0958970:intron 20.0%
!!! AAATTTTAATGTATTCGTCT+TGG - chr6_3:75229476-75229495 Msa0958970:intron 20.0%
!! AAATACTAAAAAGCTTATCA+AGG - chr6_3:75229787-75229806 Msa0958970:intron 20.0%
!! AACTTGAAATCAAACATATA+TGG + chr6_3:75230088-75230107 None:intergenic 20.0%
!!! ATATATGTTTGATTTCAAGT+TGG - chr6_3:75230087-75230106 Msa0958970:exon 20.0%
!!! ATTTCTCTGTTTGTTTTTTG+TGG + chr6_3:75224245-75224264 None:intergenic 25.0%
! ATTGAAAGAAAGATGAGAAA+CGG - chr6_3:75224263-75224282 Msa0958970:three_prime_UTR 25.0%
!! GTATGAAAAGTTTTCTTGTT+TGG - chr6_3:75224542-75224561 Msa0958970:CDS 25.0%
!! AGAAAACTTTTCACACAAAA+GGG + chr6_3:75224812-75224831 None:intergenic 25.0%
!! AAGAAAACTTTTCACACAAA+AGG + chr6_3:75224813-75224832 None:intergenic 25.0%
!! AGAAAAGTTTTCACACAAAA+GGG + chr6_3:75224887-75224906 None:intergenic 25.0%
!! AAGAAAAGTTTTCACACAAA+AGG + chr6_3:75224888-75224907 None:intergenic 25.0%
!! TGAAAACTTTTCTTACGAAA+GGG + chr6_3:75225015-75225034 None:intergenic 25.0%
!! ATGAAAACTTTTCTTACGAA+AGG + chr6_3:75225016-75225035 None:intergenic 25.0%
!! GTAAGAAAAGTTTTCATGTT+TGG - chr6_3:75225019-75225038 Msa0958970:intron 25.0%
! TTCATTCTAGTAATCAATCA+AGG - chr6_3:75225718-75225737 Msa0958970:intron 25.0%
! AGAAAACGTTTCTTACAAAA+GGG + chr6_3:75225761-75225780 None:intergenic 25.0%
! AAGAAAACGTTTCTTACAAA+AGG + chr6_3:75225762-75225781 None:intergenic 25.0%
!! GAACTTTTCTTACAACAAAA+GGG + chr6_3:75225836-75225855 None:intergenic 25.0%
!! AGAACTTTTCTTACAACAAA+AGG + chr6_3:75225837-75225856 None:intergenic 25.0%
!!! TTATGTAGTCTTTGTTTTCT+TGG - chr6_3:75225877-75225896 Msa0958970:intron 25.0%
! ATTCAAGCAAATAAACATTG+GGG + chr6_3:75226028-75226047 None:intergenic 25.0%
! TGTTATGAAATTTGGATGAT+GGG + chr6_3:75226222-75226241 None:intergenic 25.0%
!!! CATAACACTGATTTAAATTG+GGG - chr6_3:75226235-75226254 Msa0958970:intron 25.0%
!!! GCAGTTAGATTTTTATTTGA+AGG - chr6_3:75226290-75226309 Msa0958970:intron 25.0%
!!! TTTGATTTTGTGTTTTTGAC+GGG - chr6_3:75226320-75226339 Msa0958970:intron 25.0%
!! TCACACAATTTTACATATTC+TGG + chr6_3:75226356-75226375 None:intergenic 25.0%
! AATTTAGCACATTTAATGCT+TGG + chr6_3:75226408-75226427 None:intergenic 25.0%
! ACATTTCTATTGCTTGAATA+TGG - chr6_3:75226438-75226457 Msa0958970:intron 25.0%
! AAATAATTATCTCCCAATTC+CGG + chr6_3:75226694-75226713 None:intergenic 25.0%
! TTATTGAGGAATTGATCAAT+AGG - chr6_3:75226715-75226734 Msa0958970:intron 25.0%
!! AATAGGAAGTTATACCATTT+TGG - chr6_3:75226732-75226751 Msa0958970:intron 25.0%
!! ATAGGAAGTTATACCATTTT+GGG - chr6_3:75226733-75226752 Msa0958970:intron 25.0%
!! AACTTTCGTAAGGATATTTT+TGG - chr6_3:75226892-75226911 Msa0958970:intron 25.0%
!!! TGACTTTCTTTTGTTTAAGA+CGG + chr6_3:75226956-75226975 None:intergenic 25.0%
!! AACAAAAGAAAGTCATCTTT+TGG - chr6_3:75226961-75226980 Msa0958970:intron 25.0%
!! GTTGAATCTTAAATCAGTTT+TGG - chr6_3:75227164-75227183 Msa0958970:intron 25.0%
! CCATTACAATACAAATTTGA+TGG + chr6_3:75227557-75227576 None:intergenic 25.0%
! CCATCAAATTTGTATTGTAA+TGG - chr6_3:75227554-75227573 Msa0958970:intron 25.0%
! TCAAATTTGTATTGTAATGG+TGG - chr6_3:75227557-75227576 Msa0958970:intron 25.0%
!!! GATCAAAATTGTTGTTTATG+TGG + chr6_3:75227626-75227645 None:intergenic 25.0%
!! GATAGAAGATTTTGTTGAAT+TGG + chr6_3:75227755-75227774 None:intergenic 25.0%
! GATTTGAGAAATGGTTAATT+GGG + chr6_3:75227782-75227801 None:intergenic 25.0%
! TGATTTGAGAAATGGTTAAT+TGG + chr6_3:75227783-75227802 None:intergenic 25.0%
!! AATTAAGATGCAATTTTGCA+TGG + chr6_3:75227895-75227914 None:intergenic 25.0%
!! AATGATATTAGCTTCAAGTT+AGG - chr6_3:75227935-75227954 Msa0958970:intron 25.0%
! TATCCTTCTATGTACTATTT+GGG + chr6_3:75227963-75227982 None:intergenic 25.0%
!! ATAATAATTTGTCGAAGCTT+GGG - chr6_3:75228020-75228039 Msa0958970:intron 25.0%
! CATATATGGAAATATGGAAA+TGG + chr6_3:75228049-75228068 None:intergenic 25.0%
! TAGCTTCTTCAAAAAAACAA+AGG + chr6_3:75228106-75228125 None:intergenic 25.0%
! AGGAAAACAACTATTAACAA+AGG + chr6_3:75228244-75228263 None:intergenic 25.0%
! AAGTGAGATATTTGATCTAA+CGG - chr6_3:75228381-75228400 Msa0958970:intron 25.0%
!! CAAAATACTTTTCTGATTTC+AGG - chr6_3:75228652-75228671 Msa0958970:intron 25.0%
! TTACTCATTAATAATGCTTC+CGG + chr6_3:75228833-75228852 None:intergenic 25.0%
! GACCAACAAATAAAATAGAA+AGG + chr6_3:75228930-75228949 None:intergenic 25.0%
! TTCAGTAGTTTATCCATAAA+GGG + chr6_3:75228963-75228982 None:intergenic 25.0%
! ATTCAGTAGTTTATCCATAA+AGG + chr6_3:75228964-75228983 None:intergenic 25.0%
!! TTTCATCTCTTTTGCATTAA+GGG + chr6_3:75229215-75229234 None:intergenic 25.0%
! TAGCTACAAATATATCTGTA+GGG + chr6_3:75229620-75229639 None:intergenic 25.0%
!! TGATATCTGAAATTGTTCTA+TGG - chr6_3:75229669-75229688 Msa0958970:intron 25.0%
!!! TAACATGTTGTGTTATTTTC+AGG - chr6_3:75229729-75229748 Msa0958970:intron 25.0%
!!! AACATGTTGTGTTATTTTCA+GGG - chr6_3:75229730-75229749 Msa0958970:intron 25.0%
! CATGATTTAGTAGAAATTAC+TGG + chr6_3:75229901-75229920 None:intergenic 25.0%
! GTAATTTCTACTAAATCATG+TGG - chr6_3:75229901-75229920 Msa0958970:intron 25.0%
!!! TCTTTTTGATTTCTTGAACA+AGG + chr6_3:75230036-75230055 None:intergenic 25.0%
! CAAAAAGATGAATTTGAGTA+TGG - chr6_3:75230048-75230067 Msa0958970:CDS 25.0%
!!! ACTTCGACATTTTTTTAACT+CGG + chr6_3:75230202-75230221 None:intergenic 25.0%
! ACGAAAACTTTTCTCACAAA+AGG - chr6_3:75224188-75224207 Msa0958970:three_prime_UTR 30.0%
! CGAAAACTTTTCTCACAAAA+GGG - chr6_3:75224189-75224208 Msa0958970:three_prime_UTR 30.0%
TGTTGAAGTCCAACAATTTA+GGG - chr6_3:75224321-75224340 Msa0958970:three_prime_UTR 30.0%
TCCAACAATTTAGGGAAATT+GGG - chr6_3:75224329-75224348 Msa0958970:three_prime_UTR 30.0%
! TGTGTGAAAACTTTTCTTGT+TGG - chr6_3:75224890-75224909 Msa0958970:intron 30.0%
ATGAAGCACATACATTACAT+AGG - chr6_3:75225107-75225126 Msa0958970:intron 30.0%
TTGAATGTAATCACAAGTGT+TGG - chr6_3:75225181-75225200 Msa0958970:intron 30.0%
AGTAGAATGGATAGATGATT+TGG - chr6_3:75225903-75225922 Msa0958970:intron 30.0%
AGATCAGTGTTGTCAAATAT+TGG - chr6_3:75226091-75226110 Msa0958970:intron 30.0%
GTGTTATGAAATTTGGATGA+TGG + chr6_3:75226223-75226242 None:intergenic 30.0%
!! TTGATTTTGTGTTTTTGACG+GGG - chr6_3:75226321-75226340 Msa0958970:intron 30.0%
TGTAAAATTGTGTGAATGTG+AGG - chr6_3:75226361-75226380 Msa0958970:intron 30.0%
!!! AGTTCTTTTTAGTTTAGGAG+AGG - chr6_3:75226482-75226501 Msa0958970:intron 30.0%
!!! GTTCTTTTTAGTTTAGGAGA+GGG - chr6_3:75226483-75226502 Msa0958970:intron 30.0%
!!! TTCTTTTTAGTTTAGGAGAG+GGG - chr6_3:75226484-75226503 Msa0958970:intron 30.0%
!!! TGTAACTGGTTTTGAAAAGT+TGG - chr6_3:75226580-75226599 Msa0958970:intron 30.0%
!! TTTTGAAAAGTTGGATTGTG+AGG - chr6_3:75226589-75226608 Msa0958970:intron 30.0%
! TAGGAAGTTATACCATTTTG+GGG - chr6_3:75226734-75226753 Msa0958970:intron 30.0%
GACACATATACACTATTTCA+AGG + chr6_3:75226812-75226831 None:intergenic 30.0%
GTTTGAAGGTTATTAAGTGT+TGG - chr6_3:75226846-75226865 Msa0958970:intron 30.0%
!! AATCTATGTTAGTCTTTGCT+TGG - chr6_3:75226918-75226937 Msa0958970:intron 30.0%
GTACAGAAGATTATCCAAAA+AGG + chr6_3:75226990-75227009 None:intergenic 30.0%
!!! TAAAAGGCATTTTTGAAACC+AGG + chr6_3:75227293-75227312 None:intergenic 30.0%
! TGGTTTCAAAAATGCCTTTT+AGG - chr6_3:75227292-75227311 Msa0958970:intron 30.0%
! GGTTTCAAAAATGCCTTTTA+GGG - chr6_3:75227293-75227312 Msa0958970:intron 30.0%
! GTTTCAAAAATGCCTTTTAG+GGG - chr6_3:75227294-75227313 Msa0958970:intron 30.0%
ATTGCAAAATAACCCCTAAA+AGG + chr6_3:75227309-75227328 None:intergenic 30.0%
!! TGTGGACTAGATTAATCTAA+CGG + chr6_3:75227648-75227667 None:intergenic 30.0%
GTGGTACATAATATGATATG+TGG + chr6_3:75227666-75227685 None:intergenic 30.0%
! AAAAATAATGGAAGAAGCGA+GGG + chr6_3:75227721-75227740 None:intergenic 30.0%
ATTTGCAGTGATTTGAGAAA+TGG + chr6_3:75227791-75227810 None:intergenic 30.0%
! ATTCACTTCCAATTTTTCAC+AGG + chr6_3:75227829-75227848 None:intergenic 30.0%
GTATCCTTCTATGTACTATT+TGG + chr6_3:75227964-75227983 None:intergenic 30.0%
! CATAATAATTTGTCGAAGCT+TGG - chr6_3:75228019-75228038 Msa0958970:intron 30.0%
! TAATAATTTGTCGAAGCTTG+GGG - chr6_3:75228021-75228040 Msa0958970:intron 30.0%
TGAAACCATAGTCCATAATT+GGG + chr6_3:75228293-75228312 None:intergenic 30.0%
ATGAAACCATAGTCCATAAT+TGG + chr6_3:75228294-75228313 None:intergenic 30.0%
AGAGAGAAGAGAATGTTATT+TGG - chr6_3:75228334-75228353 Msa0958970:intron 30.0%
GATCTAACGGTTATTAGTAA+TGG - chr6_3:75228394-75228413 Msa0958970:intron 30.0%
CAAACCAAACATATCATTAC+AGG + chr6_3:75228463-75228482 None:intergenic 30.0%
CTGTAATGATATGTTTGGTT+TGG - chr6_3:75228461-75228480 Msa0958970:intron 30.0%
!! TATGTTTGGTTTGGTTTGTT+TGG - chr6_3:75228470-75228489 Msa0958970:intron 30.0%
AGCGATATATTCTATCTCTA+TGG - chr6_3:75228592-75228611 Msa0958970:intron 30.0%
! TAAGAAAAGGCGTACAAATA+AGG + chr6_3:75228873-75228892 None:intergenic 30.0%
! AGCTGTTTCATAAACTATCT+TGG - chr6_3:75229064-75229083 Msa0958970:intron 30.0%
AAGTACTTGTGAGACTATTT+GGG + chr6_3:75229154-75229173 None:intergenic 30.0%
TAAGTACTTGTGAGACTATT+TGG + chr6_3:75229155-75229174 None:intergenic 30.0%
TCAAATAAGTCAATCCAAAC+AGG - chr6_3:75229189-75229208 Msa0958970:intron 30.0%
! CTTTCATCTCTTTTGCATTA+AGG + chr6_3:75229216-75229235 None:intergenic 30.0%
ATTTGAATCAACTGCTCAAT+GGG - chr6_3:75229377-75229396 Msa0958970:intron 30.0%
GAAAACTGAAGATCTGTAAT+TGG - chr6_3:75229516-75229535 Msa0958970:intron 30.0%
! TATAAGCCAACTGTTTCTTA+TGG + chr6_3:75229555-75229574 None:intergenic 30.0%
GTAGCTACAAATATATCTGT+AGG + chr6_3:75229621-75229640 None:intergenic 30.0%
ATTTCTACTAAATCATGTGG+TGG - chr6_3:75229904-75229923 Msa0958970:intron 30.0%
AAATCAAACATATATGGCAG+TGG + chr6_3:75230082-75230101 None:intergenic 30.0%
CGTGTTTGATTGCTTTGATT+GGG + chr6_3:75224171-75224190 None:intergenic 35.0%
TCGTGTTTGATTGCTTTGAT+TGG + chr6_3:75224172-75224191 None:intergenic 35.0%
AAATTGTTGGACTTCAACAC+TGG + chr6_3:75224320-75224339 None:intergenic 35.0%
GTGTTGAAGTCCAACAATTT+AGG - chr6_3:75224320-75224339 Msa0958970:three_prime_UTR 35.0%
GTCCAACAATTTAGGGAAAT+TGG - chr6_3:75224328-75224347 Msa0958970:three_prime_UTR 35.0%
TCCCAATTTCCCTAAATTGT+TGG + chr6_3:75224333-75224352 None:intergenic 35.0%
! ATGACCCTTTTTGTTAGACT+AGG - chr6_3:75224605-75224624 Msa0958970:intron 35.0%
GCTTCCTAGTCTAACAAAAA+GGG + chr6_3:75224612-75224631 None:intergenic 35.0%
TGCTTCCTAGTCTAACAAAA+AGG + chr6_3:75224613-75224632 None:intergenic 35.0%
GTGCTTCATAGTCTAACAAA+AGG + chr6_3:75225096-75225115 None:intergenic 35.0%
! GTTTTCTTGGTTGAGTAGAA+TGG - chr6_3:75225890-75225909 Msa0958970:intron 35.0%
TGATTGATTGAGTGATACTG+TGG - chr6_3:75225977-75225996 Msa0958970:intron 35.0%
! GTGTTGTCAAATATTGGTCT+TGG - chr6_3:75226097-75226116 Msa0958970:intron 35.0%
!! TTGTCAAATATTGGTCTTGG+TGG - chr6_3:75226100-75226119 Msa0958970:intron 35.0%
AAAATCCGCCATAAAAGTCA+TGG + chr6_3:75226183-75226202 None:intergenic 35.0%
GTCATATGATCATGTAGATG+TGG - chr6_3:75226261-75226280 Msa0958970:intron 35.0%
TCTATTGCTTGAATATGGCA+TGG - chr6_3:75226443-75226462 Msa0958970:intron 35.0%
!!! TCTTTTTAGTTTAGGAGAGG+GGG - chr6_3:75226485-75226504 Msa0958970:intron 35.0%
CAATCACTGTTGAGGATTTA+GGG - chr6_3:75226541-75226560 Msa0958970:intron 35.0%
TTCGTTCATTCAGCCAATTA+AGG + chr6_3:75226618-75226637 None:intergenic 35.0%
! AGGAAGTTATACCATTTTGG+GGG - chr6_3:75226735-75226754 Msa0958970:intron 35.0%
!! TTATACCATTTTGGGGGTAA+TGG - chr6_3:75226741-75226760 Msa0958970:intron 35.0%
!! TATACCATTTTGGGGGTAAT+GGG - chr6_3:75226742-75226761 Msa0958970:intron 35.0%
!!! AGTTTTGATTGTGAGTTTGC+TGG - chr6_3:75226768-75226787 Msa0958970:intron 35.0%
!!! TGTGAGTTTGCTGGTTTTAT+TGG - chr6_3:75226777-75226796 Msa0958970:intron 35.0%
ATAACCTTCAAACCACAACA+AGG + chr6_3:75226839-75226858 None:intergenic 35.0%
GTAATGTGAGAACTTTCGTA+AGG - chr6_3:75226882-75226901 Msa0958970:intron 35.0%
!! TCATCTTTTGGAAGCCTTTT+TGG - chr6_3:75226973-75226992 Msa0958970:intron 35.0%
TCAATTTGCATCAAAGTGAG+AGG - chr6_3:75227122-75227141 Msa0958970:intron 35.0%
!!! CAGTTTTGGACTTGAATCAT+TGG - chr6_3:75227178-75227197 Msa0958970:intron 35.0%
! TTGTAATGGTGGTGAATTCT+AGG - chr6_3:75227568-75227587 Msa0958970:intron 35.0%
GAGTTGTAATATAGCGTATG+TGG + chr6_3:75227685-75227704 None:intergenic 35.0%
! GAAAAATAATGGAAGAAGCG+AGG + chr6_3:75227722-75227741 None:intergenic 35.0%
GCAACTTACCTGTGAAAAAT+TGG - chr6_3:75227818-75227837 Msa0958970:intron 35.0%
! ATTCTCTCTGGTGTCAATTT+AGG + chr6_3:75228139-75228158 None:intergenic 35.0%
!! GTTGTTTTCCTACCAATAGT+TGG - chr6_3:75228253-75228272 Msa0958970:intron 35.0%
TAGTCCATAATTGGGTTACA+TGG + chr6_3:75228285-75228304 None:intergenic 35.0%
! TGTAACCCAATTATGGACTA+TGG - chr6_3:75228285-75228304 Msa0958970:intron 35.0%
TATGGTTTCATCTCCATTGA+TGG - chr6_3:75228303-75228322 Msa0958970:intron 35.0%
!! GAGAATGTTATTTGGTGTGA+AGG - chr6_3:75228342-75228361 Msa0958970:intron 35.0%
CGGTTATTAGTAATGGTACA+CGG - chr6_3:75228401-75228420 Msa0958970:intron 35.0%
GGTTATTAGTAATGGTACAC+GGG - chr6_3:75228402-75228421 Msa0958970:intron 35.0%
! ATCATTACAGGTGGATTCTA+GGG + chr6_3:75228451-75228470 None:intergenic 35.0%
! TATCATTACAGGTGGATTCT+AGG + chr6_3:75228452-75228471 None:intergenic 35.0%
TCCACCTGTAATGATATGTT+TGG - chr6_3:75228456-75228475 Msa0958970:intron 35.0%
ACCAAACATATCATTACAGG+TGG + chr6_3:75228460-75228479 None:intergenic 35.0%
! TACTTTTCTGATTTCAGGAG+TGG - chr6_3:75228657-75228676 Msa0958970:intron 35.0%
! ACTTTTCTGATTTCAGGAGT+GGG - chr6_3:75228658-75228677 Msa0958970:intron 35.0%
!!! TTACAAGTTGGTTTTGGGTT+TGG - chr6_3:75228703-75228722 Msa0958970:intron 35.0%
! GTTGGTTTAGGATTTGGTTA+TGG - chr6_3:75228739-75228758 Msa0958970:intron 35.0%
!! TATCGAAGGTACTCAAATGT+TGG - chr6_3:75228790-75228809 Msa0958970:intron 35.0%
! AATGTTGGAAATCCTTTTCG+TGG - chr6_3:75228805-75228824 Msa0958970:intron 35.0%
GCGTACAAATAAGGAAATGA+AGG + chr6_3:75228864-75228883 None:intergenic 35.0%
GTTTATCCATAAAGGGAAAG+AGG + chr6_3:75228956-75228975 None:intergenic 35.0%
AAACTATCTTGGTGAGCTTA+TGG - chr6_3:75229075-75229094 Msa0958970:intron 35.0%
TTCTCTCTTCAGATTCACAT+AGG + chr6_3:75229265-75229284 None:intergenic 35.0%
CATTTGAATCAACTGCTCAA+TGG - chr6_3:75229376-75229395 Msa0958970:intron 35.0%
AACATGCCATAAGAAACAGT+TGG - chr6_3:75229546-75229565 Msa0958970:intron 35.0%
ACAAATATATCTGTAGGGTC+TGG + chr6_3:75229615-75229634 None:intergenic 35.0%
! ATCTGAAATTGTTCTATGGC+TGG - chr6_3:75229673-75229692 Msa0958970:intron 35.0%
TGCAACTCTCCATTTGAATA+TGG + chr6_3:75230162-75230181 None:intergenic 35.0%
ATTCAAATGGAGAGTTGCAA+TGG - chr6_3:75230163-75230182 Msa0958970:five_prime_UTR 35.0%
CTCATGAGTATTTGGTACTG+TGG - chr6_3:75224139-75224158 Msa0958970:three_prime_UTR 40.0%
! AGAAACGGTGATGATGAGAA+GGG - chr6_3:75224278-75224297 Msa0958970:three_prime_UTR 40.0%
AATTTAGGGAAATTGGGACC+TGG - chr6_3:75224335-75224354 Msa0958970:three_prime_UTR 40.0%
!! TTCGCCGGCTTTGATTATAA+GGG - chr6_3:75224743-75224762 Msa0958970:intron 40.0%
!! AATCAATTTGCTAGCAGCAC+CGG + chr6_3:75224769-75224788 None:intergenic 40.0%
! TGGTGTCAACATGTCAATGT+CGG + chr6_3:75225136-75225155 None:intergenic 40.0%
!! TAATCACAAGTGTTGGTGTC+TGG - chr6_3:75225188-75225207 Msa0958970:intron 40.0%
TTCAAACAACTCTTAAGCGC+CGG + chr6_3:75225258-75225277 None:intergenic 40.0%
CACAAGTTTCGATGATGTGT+TGG - chr6_3:75225509-75225528 Msa0958970:intron 40.0%
TTTCGATGATGTGTTGGAGT+CGG - chr6_3:75225515-75225534 Msa0958970:intron 40.0%
! ACACCTTCGATCAAAAGTGT+CGG - chr6_3:75225540-75225559 Msa0958970:CDS 40.0%
!!! GGATGTTTTGACAACTACCA+TGG - chr6_3:75226134-75226153 Msa0958970:intron 40.0%
ACAACTACCATGGCCAATTT+AGG - chr6_3:75226144-75226163 Msa0958970:intron 40.0%
AATCCTTCCTAAATTGGCCA+TGG + chr6_3:75226154-75226173 None:intergenic 40.0%
CTCTGCAATCCTTCCTAAAT+TGG + chr6_3:75226160-75226179 None:intergenic 40.0%
! TTGCAGAGCCATGACTTTTA+TGG - chr6_3:75226172-75226191 Msa0958970:intron 40.0%
!! ATTTGGATGATGGGCAATAG+CGG + chr6_3:75226213-75226232 None:intergenic 40.0%
TGATCATGTAGATGTGGATC+TGG - chr6_3:75226267-75226286 Msa0958970:intron 40.0%
GATCATGTAGATGTGGATCT+GGG - chr6_3:75226268-75226287 Msa0958970:intron 40.0%
TTTAGGAGAGGGGGTAAAAT+TGG - chr6_3:75226494-75226513 Msa0958970:intron 40.0%
TTAGGAGAGGGGGTAAAATT+GGG - chr6_3:75226495-75226514 Msa0958970:intron 40.0%
AACAGTGATTGCATGACCAA+GGG + chr6_3:75226532-75226551 None:intergenic 40.0%
GCAATCACTGTTGAGGATTT+AGG - chr6_3:75226540-75226559 Msa0958970:intron 40.0%
!!! GTTTTGACTGTGTGTGTAAC+TGG - chr6_3:75226566-75226585 Msa0958970:intron 40.0%
GATTGTGAGGCTTCCTTAAT+TGG - chr6_3:75226602-75226621 Msa0958970:intron 40.0%
ATCACATGACAACGTGAATG+TGG - chr6_3:75226638-75226657 Msa0958970:intron 40.0%
TCACATGACAACGTGAATGT+GGG - chr6_3:75226639-75226658 Msa0958970:intron 40.0%
ACCTGGATTCTCTATTGTCA+GGG + chr6_3:75226671-75226690 None:intergenic 40.0%
CAAGTCTGCAATGAATCAAC+AGG - chr6_3:75227380-75227399 Msa0958970:intron 40.0%
ATTAGAGTCATTCACCTTGC+TGG + chr6_3:75227406-75227425 None:intergenic 40.0%
TGAAAAAAGGTTCCCTGTGT+TGG + chr6_3:75227456-75227475 None:intergenic 40.0%
!! TTGTTGTTTATGTGGTCCAC+CGG + chr6_3:75227618-75227637 None:intergenic 40.0%
GAGAAATGGTTAATTGGGAG+AGG + chr6_3:75227777-75227796 None:intergenic 40.0%
GAGCCCAAATAGTACATAGA+AGG - chr6_3:75227957-75227976 Msa0958970:intron 40.0%
! TCTCTGGTGTCAATTTAGGT+GGG + chr6_3:75228135-75228154 None:intergenic 40.0%
GGAAAACAAACAACCCACTT+GGG + chr6_3:75228223-75228242 None:intergenic 40.0%
AGGAAAACAAACAACCCACT+TGG + chr6_3:75228224-75228243 None:intergenic 40.0%
TCGTCCATGTAACCCAATTA+TGG - chr6_3:75228278-75228297 Msa0958970:intron 40.0%
TCTCTTGTCACAACCATCAA+TGG + chr6_3:75228319-75228338 None:intergenic 40.0%
!!! CTGGCTTACAAGTTGGTTTT+GGG - chr6_3:75228698-75228717 Msa0958970:intron 40.0%
!! TGTGGTGTTGGTTTAGGATT+TGG - chr6_3:75228733-75228752 Msa0958970:intron 40.0%
! TTTAGGATTTGGTTATGGCG+TGG - chr6_3:75228744-75228763 Msa0958970:intron 40.0%
! TTAGGATTTGGTTATGGCGT+GGG - chr6_3:75228745-75228764 Msa0958970:intron 40.0%
!! TTGCACAAGATGAGTATCGA+AGG - chr6_3:75228776-75228795 Msa0958970:intron 40.0%
ATCCATAAAGGGAAAGAGGA+AGG + chr6_3:75228952-75228971 None:intergenic 40.0%
! TTTTGCATTAAGGGCCTGTT+TGG + chr6_3:75229206-75229225 None:intergenic 40.0%
! CTAGTCACATTTTTCCCCTA+TGG + chr6_3:75229312-75229331 None:intergenic 40.0%
GGATGATATTACTGCACTTG+TGG - chr6_3:75229751-75229770 Msa0958970:intron 40.0%
CATCAAGAGAAATCGACAAG+TGG - chr6_3:75229813-75229832 Msa0958970:intron 40.0%
TCATGTGGTGGCAACATAAT+TGG - chr6_3:75229916-75229935 Msa0958970:intron 40.0%
CATGTGGTGGCAACATAATT+GGG - chr6_3:75229917-75229936 Msa0958970:intron 40.0%
ACTGTCTTGAAAAGACTGTG+TGG - chr6_3:75230132-75230151 Msa0958970:five_prime_UTR 40.0%
TGTGGTGTGCCATATTCAAA+TGG - chr6_3:75230150-75230169 Msa0958970:five_prime_UTR 40.0%
! GTTGCAATGGTTTCTGGATT+TGG - chr6_3:75230176-75230195 Msa0958970:five_prime_UTR 40.0%
! GAGAAACGGTGATGATGAGA+AGG - chr6_3:75224277-75224296 Msa0958970:three_prime_UTR 45.0%
!! ATGATGAGAAGGGTTTGCTG+TGG - chr6_3:75224288-75224307 Msa0958970:three_prime_UTR 45.0%
!! GGAAGCATTGACACTGATAC+AGG - chr6_3:75224626-75224645 Msa0958970:intron 45.0%
!! GTTCGCCGGCTTTGATTATA+AGG - chr6_3:75224742-75224761 Msa0958970:intron 45.0%
CGTGGAAACATGTTGGATAG+TGG - chr6_3:75225211-75225230 Msa0958970:intron 45.0%
TGCTTCATAGTCTGACGAAC+GGG + chr6_3:75225414-75225433 None:intergenic 45.0%
GTGCTTCATAGTCTGACGAA+CGG + chr6_3:75225415-75225434 None:intergenic 45.0%
GTCAACATGTGTGTCGTATG+TGG + chr6_3:75225449-75225468 None:intergenic 45.0%
! ACACCGACACTTTTGATCGA+AGG + chr6_3:75225546-75225565 None:intergenic 45.0%
CTACCATGGCCAATTTAGGA+AGG - chr6_3:75226148-75226167 Msa0958970:intron 45.0%
! CAGAGCCATGACTTTTATGG+CGG - chr6_3:75226175-75226194 Msa0958970:intron 45.0%
TAGGAGAGGGGGTAAAATTG+GGG - chr6_3:75226496-75226515 Msa0958970:intron 45.0%
CAACAGTGATTGCATGACCA+AGG + chr6_3:75226533-75226552 None:intergenic 45.0%
TGGTCATGCAATCACTGTTG+AGG - chr6_3:75226533-75226552 Msa0958970:intron 45.0%
CACATGACAACGTGAATGTG+GGG - chr6_3:75226640-75226659 Msa0958970:intron 45.0%
ACCCTGACAATAGAGAATCC+AGG - chr6_3:75226667-75226686 Msa0958970:intron 45.0%
GACCTGGATTCTCTATTGTC+AGG + chr6_3:75226672-75226691 None:intergenic 45.0%
GACAATAGAGAATCCAGGTC+CGG - chr6_3:75226672-75226691 Msa0958970:intron 45.0%
! TATGTGTCCTTGCCTTGTTG+TGG - chr6_3:75226824-75226843 Msa0958970:intron 45.0%
CTTCAAACCACAACAAGGCA+AGG + chr6_3:75226834-75226853 None:intergenic 45.0%
! CTTGCCTTGTTGTGGTTTGA+AGG - chr6_3:75226832-75226851 Msa0958970:intron 45.0%
GATTATGCTGTGAATCCCAC+AGG - chr6_3:75227239-75227258 Msa0958970:intron 45.0%
TGAAACCAGGTTGCAGAACT+TGG + chr6_3:75227280-75227299 None:intergenic 45.0%
AATGAATCAACAGGCCAGCA+AGG - chr6_3:75227389-75227408 Msa0958970:intron 45.0%
AACTAATCCAGCTCCAACAC+AGG - chr6_3:75227440-75227459 Msa0958970:intron 45.0%
ACTAATCCAGCTCCAACACA+GGG - chr6_3:75227441-75227460 Msa0958970:intron 45.0%
!! TGGTGGTGAATTCTAGGATG+AGG - chr6_3:75227574-75227593 Msa0958970:intron 45.0%
!! GGTGGTGAATTCTAGGATGA+GGG - chr6_3:75227575-75227594 Msa0958970:intron 45.0%
! CTCTCTGGTGTCAATTTAGG+TGG + chr6_3:75228136-75228155 None:intergenic 45.0%
AACAAACAACCCACTTGGGT+TGG + chr6_3:75228219-75228238 None:intergenic 45.0%
ACATGGACGAAGCCAACTAT+TGG + chr6_3:75228268-75228287 None:intergenic 45.0%
TTAGTAATGGTACACGGGTG+AGG - chr6_3:75228407-75228426 Msa0958970:intron 45.0%
TAGTAATGGTACACGGGTGA+GGG - chr6_3:75228408-75228427 Msa0958970:intron 45.0%
ACACGGGTGAGGGATTTAAT+TGG - chr6_3:75228418-75228437 Msa0958970:intron 45.0%
!! CTGATTTCAGGAGTGGGTTT+TGG - chr6_3:75228664-75228683 Msa0958970:intron 45.0%
CTTGTAAGCCAGGAATTCCA+GGG + chr6_3:75228690-75228709 None:intergenic 45.0%
ACTTGTAAGCCAGGAATTCC+AGG + chr6_3:75228691-75228710 None:intergenic 45.0%
GGAATTCCTGGCTTACAAGT+TGG - chr6_3:75228691-75228710 Msa0958970:intron 45.0%
CCAAAACCAACTTGTAAGCC+AGG + chr6_3:75228700-75228719 None:intergenic 45.0%
!!! CCTGGCTTACAAGTTGGTTT+TGG - chr6_3:75228697-75228716 Msa0958970:intron 45.0%
ATTTGGTTATGGCGTGGGAA+AGG - chr6_3:75228750-75228769 Msa0958970:intron 45.0%
TTTGGTTATGGCGTGGGAAA+GGG - chr6_3:75228751-75228770 Msa0958970:intron 45.0%
! GGAAATCCTTTTCGTGGTTC+CGG - chr6_3:75228811-75228830 Msa0958970:intron 45.0%
GTCCTTCCTCTTTCCCTTTA+TGG - chr6_3:75228947-75228966 Msa0958970:intron 45.0%
AATCAACTGCTCAATGGGTG+TGG - chr6_3:75229382-75229401 Msa0958970:intron 45.0%
TCGACAAGTGGAGAAGATGA+TGG - chr6_3:75229825-75229844 Msa0958970:intron 45.0%
TGGAGAGTTGCAATGGTTTC+TGG - chr6_3:75230170-75230189 Msa0958970:five_prime_UTR 45.0%
!! ATATTATTTATATTAAGAAA+AGG + chr6_3:75228886-75228905 None:intergenic 5.0%
!! TTAATATAAATAATATCATT+TGG - chr6_3:75228890-75228909 Msa0958970:intron 5.0%
!! AATACATTAAAATTTATAAA+TGG + chr6_3:75229471-75229490 None:intergenic 5.0%
GGGAAATTGGGACCTGGATT+TGG - chr6_3:75224341-75224360 Msa0958970:three_prime_UTR 50.0%
!! TTGGGACCTGGATTTGGTGT+TGG - chr6_3:75224347-75224366 Msa0958970:three_prime_UTR 50.0%
!! TTTGGTGTTGGTGCTGGTTG+TGG - chr6_3:75224359-75224378 Msa0958970:three_prime_UTR 50.0%
!! TTGGTGTTGGTGCTGGTTGT+GGG - chr6_3:75224360-75224379 Msa0958970:three_prime_UTR 50.0%
!!! GGTTTTGGCATCGGTCTTCT+TGG - chr6_3:75224386-75224405 Msa0958970:three_prime_UTR 50.0%
!! TTTGGCATCGGTCTTCTTGG+AGG - chr6_3:75224389-75224408 Msa0958970:three_prime_UTR 50.0%
CCGGCCCTTATAATCAAAGC+CGG + chr6_3:75224750-75224769 None:intergenic 50.0%
! CCGGCTTTGATTATAAGGGC+CGG - chr6_3:75224747-75224766 Msa0958970:intron 50.0%
TGTCTGGCGTGGAAACATGT+TGG - chr6_3:75225204-75225223 Msa0958970:intron 50.0%
ACGCCTTCGATTAGTAGTGC+CGG - chr6_3:75225236-75225255 Msa0958970:intron 50.0%
!! TTGGTCTTGGTGGATTGCAG+TGG - chr6_3:75226110-75226129 Msa0958970:intron 50.0%
AGGAGAGGGGGTAAAATTGG+GGG - chr6_3:75226497-75226516 Msa0958970:intron 50.0%
! TTGGGGGAAGTTGATTCCCT+TGG - chr6_3:75226513-75226532 Msa0958970:intron 50.0%
AGAGAATCCAGGTCCGGAAT+TGG - chr6_3:75226678-75226697 Msa0958970:intron 50.0%
GAGAATCCAGGTCCGGAATT+GGG - chr6_3:75226679-75226698 Msa0958970:intron 50.0%
TTATCTCCCAATTCCGGACC+TGG + chr6_3:75226688-75226707 None:intergenic 50.0%
CCATGACAGAATCAGCCTGT+GGG + chr6_3:75227257-75227276 None:intergenic 50.0%
TTTATGTGGTCCACCGGTGA+GGG + chr6_3:75227612-75227631 None:intergenic 50.0%
GTCTCAGGTTCGATTCTCTC+TGG + chr6_3:75228151-75228170 None:intergenic 50.0%
GAATCGAACCTGAGACCTCA+AGG - chr6_3:75228155-75228174 Msa0958970:intron 50.0%
!! GTGGTATTGGCTTGGGATCT+GGG + chr6_3:75228192-75228211 None:intergenic 50.0%
!! AGTGGTATTGGCTTGGGATC+TGG + chr6_3:75228193-75228212 None:intergenic 50.0%
GATCCCAAGCCAATACCACT+AGG - chr6_3:75228193-75228212 Msa0958970:intron 50.0%
!! TGGCCTAGTGGTATTGGCTT+GGG + chr6_3:75228199-75228218 None:intergenic 50.0%
!! TTGGCCTAGTGGTATTGGCT+TGG + chr6_3:75228200-75228219 None:intergenic 50.0%
!! TTGGGTTGGCCTAGTGGTAT+TGG + chr6_3:75228205-75228224 None:intergenic 50.0%
GGACGAAGCCAACTATTGGT+AGG + chr6_3:75228264-75228283 None:intergenic 50.0%
!! ACAGGTGGATTCTAGGGTGA+GGG + chr6_3:75228445-75228464 None:intergenic 50.0%
!! TACAGGTGGATTCTAGGGTG+AGG + chr6_3:75228446-75228465 None:intergenic 50.0%
!!! GTTGGTTTTGGGTTTGGTGC+TGG - chr6_3:75228709-75228728 Msa0958970:intron 50.0%
!! TTTGGGTTTGGTGCTGGATG+TGG - chr6_3:75228715-75228734 Msa0958970:intron 50.0%
!! TTTGGTGCTGGATGTGGTGT+TGG - chr6_3:75228721-75228740 Msa0958970:intron 50.0%
!! GCTGGATGTGGTGTTGGTTT+AGG - chr6_3:75228727-75228746 Msa0958970:intron 50.0%
ATGCTTCCGGAACCACGAAA+AGG + chr6_3:75228820-75228839 None:intergenic 50.0%
CCAGCACCAACACCAAATCC+AGG + chr6_3:75224356-75224375 None:intergenic 55.0%
!! CCTGGATTTGGTGTTGGTGC+TGG - chr6_3:75224353-75224372 Msa0958970:three_prime_UTR 55.0%
!! TGTGGGCTCGGTTTTGGCAT+CGG - chr6_3:75224377-75224396 Msa0958970:three_prime_UTR 55.0%
CGTGTAGTGTCTGTGTTCGC+CGG - chr6_3:75224728-75224747 Msa0958970:intron 55.0%
!! ACAAGTGTTGGTGTCTGGCG+TGG - chr6_3:75225193-75225212 Msa0958970:intron 55.0%
!! GTCTTGGTGGATTGCAGTGG+TGG - chr6_3:75226113-75226132 Msa0958970:intron 55.0%
TGCGCCCATTACCCCCAAAA+TGG + chr6_3:75226749-75226768 None:intergenic 55.0%
! CCCACAGGCTGATTCTGTCA+TGG - chr6_3:75227254-75227273 Msa0958970:intron 55.0%
GCCATGACAGAATCAGCCTG+TGG + chr6_3:75227258-75227277 None:intergenic 55.0%
CATGGCCAAGTTCTGCAACC+TGG - chr6_3:75227272-75227291 Msa0958970:intron 55.0%
AAGGTTCCCTGTGTTGGAGC+TGG + chr6_3:75227450-75227469 None:intergenic 55.0%
GTTTATGTGGTCCACCGGTG+AGG + chr6_3:75227613-75227632 None:intergenic 55.0%
TCGAACCTGAGACCTCAAGG+AGG - chr6_3:75228158-75228177 Msa0958970:intron 55.0%
TACCACTAGGCCAACCCAAG+TGG - chr6_3:75228206-75228225 Msa0958970:intron 55.0%
ACCACTAGGCCAACCCAAGT+GGG - chr6_3:75228207-75228226 Msa0958970:intron 55.0%
!! GGTTTTGGCCCTGGAATTCC+TGG - chr6_3:75228679-75228698 Msa0958970:intron 55.0%
!! GTTGGTGCTGGTTGTGGGCT+CGG - chr6_3:75224365-75224384 Msa0958970:three_prime_UTR 60.0%
!! GCTGGTTGTGGGCTCGGTTT+TGG - chr6_3:75224371-75224390 Msa0958970:three_prime_UTR 60.0%
! GCGCCGGCACTACTAATCGA+AGG + chr6_3:75225242-75225261 None:intergenic 60.0%
GGCTCCAACAAGTCCCTCAC+CGG - chr6_3:75227596-75227615 Msa0958970:intron 60.0%
TCCAACAAGTCCCTCACCGG+TGG - chr6_3:75227599-75227618 Msa0958970:intron 60.0%
TCCACCGGTGAGGGACTTGT+TGG + chr6_3:75227603-75227622 None:intergenic 60.0%
GTGCTCCTCCTTGAGGTCTC+AGG + chr6_3:75228166-75228185 None:intergenic 60.0%
! TGGGAGTGTGCTCCTCCTTG+AGG + chr6_3:75228173-75228192 None:intergenic 60.0%
!! ACCCACTTGGGTTGGCCTAG+TGG + chr6_3:75228211-75228230 None:intergenic 60.0%
!! TCAGGAGTGGGTTTTGGCCC+TGG - chr6_3:75228670-75228689 Msa0958970:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 75224139 75230235 75224139 ID=Msa0958970;Name=Msa0958970
chr6_3 mRNA 75224139 75230235 75224139 ID=Msa0958970-mRNA-1;Parent=Msa0958970;Name=Msa0958970-mRNA-1;_AED=0.04;_eAED=0.04;_QI=136|1|1|1|1|1|3|391|134
chr6_3 exon 75224139 75224623 75224139 ID=Msa0958970-mRNA-1:exon:13449;Parent=Msa0958970-mRNA-1
chr6_3 exon 75225526 75225700 75225526 ID=Msa0958970-mRNA-1:exon:13448;Parent=Msa0958970-mRNA-1
chr6_3 exon 75229964 75230235 75229964 ID=Msa0958970-mRNA-1:exon:13447;Parent=Msa0958970-mRNA-1
chr6_3 five_prime_UTR 75230100 75230235 75230100 ID=Msa0958970-mRNA-1:five_prime_utr;Parent=Msa0958970-mRNA-1
chr6_3 CDS 75229964 75230099 75229964 ID=Msa0958970-mRNA-1:cds;Parent=Msa0958970-mRNA-1
chr6_3 CDS 75225526 75225700 75225526 ID=Msa0958970-mRNA-1:cds;Parent=Msa0958970-mRNA-1
chr6_3 CDS 75224530 75224623 75224530 ID=Msa0958970-mRNA-1:cds;Parent=Msa0958970-mRNA-1
chr6_3 three_prime_UTR 75224139 75224529 75224139 ID=Msa0958970-mRNA-1:three_prime_utr;Parent=Msa0958970-mRNA-1
Gene Sequence

>Msa0958970

ATGAGAAACGGTGATGATGAGAAGGGTTTGCTGTGGAAGCTTCCAGTGTTGAAGTCCAACAATTTAGGGAAATTGGGACCTGGATTTGGTGTTGGTGCTGGTTGTGGGCTCGGTTTTGGCATCGGTCTTCTTGGAGGAGTGGGTTTTGGCCCTGGAATTCCTGGCTTACAAGTTGGTTTTGGGTTTGGTGCTGGATGTGGTGTTGGTTTAGGATTTGGTTATGGCGTGGGAAAGGGAATTGCACAAGATGAGTATCGAAGGTACTCAAATGTTGGAAATCCTTTTCGTGGTTCCGGAAGCATTATTAATGAGGATGATATTACTGCACTTGTGGATGACATAGTCATAAATACTAAAAAGCTTATCAAGGCAACATCAAGAGAAATCGACAAGTGGAGAAGATGA
Protein sequence

>Msa0958970

MRNGDDEKGLLWKLPVLKSNNLGKLGPGFGVGAGCGLGFGIGLLGGVGFGPGIPGLQVGFGFGAGCGVGLGFGYGVGKGIAQDEYRRYSNVGNPFRGSGSIINEDDITALVDDIVINTKKLIKATSREIDKWRR*