AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1316830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1316830 MtrunA17_Chr8g0354981 98.333 60 1 0 1 60 1 60 2.43e-38 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1316830 AT3G15395.5 65.000 60 20 1 1 60 1 59 3.70e-24 85.5
Msa1316830 AT3G15395.2 65.000 60 20 1 1 60 1 59 3.70e-24 85.5
Msa1316830 AT3G15395.3 65.000 60 20 1 1 60 1 59 3.70e-24 85.5
Msa1316830 AT3G15395.4 65.000 60 20 1 1 60 1 59 3.70e-24 85.5
Msa1316830 AT3G15395.1 65.000 60 20 1 1 60 1 59 3.70e-24 85.5

Find 51 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATAAGAGTCTTTCTAAA+AGG 0.197753 8_4:-17769598 Msa1316830:three_prime_UTR
TGTTAAAATTGTATACTTTC+AGG 0.214295 8_4:-17769428 Msa1316830:three_prime_UTR
TGTGTCCCGAAATCTGTTTC+TGG 0.214416 8_4:-17772561 Msa1316830:five_prime_UTR
GTTGAGAAGAAGAAATTAAA+TGG 0.231933 8_4:+17769518 None:intergenic
GTTCTTTGGGCTTGTGCTAT+TGG 0.281471 8_4:-17770184 Msa1316830:CDS
AGTGGTCTATGAGAGTTCTT+TGG 0.313525 8_4:-17770198 Msa1316830:CDS
GATTCGCCAGAAACAGATTT+CGG 0.339558 8_4:+17772555 None:intergenic
AGGCTTGAAAGGAATGGATT+TGG 0.349048 8_4:-17769760 Msa1316830:CDS
GTGATTGCTACCTCCTTTGT+AGG 0.349340 8_4:-17769476 Msa1316830:three_prime_UTR
ATTCGCCAGAAACAGATTTC+GGG 0.353365 8_4:+17772556 None:intergenic
ATCCATTCCTTTCAAGCCTT+CGG 0.357129 8_4:+17769764 None:intergenic
TGGAGTATAAGCCGGAAAAC+AGG 0.372708 8_4:-17772646 None:intergenic
TTCGCTAACGATTTATGTTA+CGG 0.372917 8_4:+17772601 None:intergenic
TCATTTCAGATTAAAGTTGC+TGG 0.384437 8_4:-17770264 Msa1316830:intron
TAGAAAGACAAAAGCAGAAT+AGG 0.394330 8_4:-17769800 Msa1316830:CDS
GTGGTCTATGAGAGTTCTTT+GGG 0.402171 8_4:-17770197 Msa1316830:CDS
TACCTGTCTAGGTCTGTATA+TGG 0.414586 8_4:-17769829 Msa1316830:intron
TCGCTAACGATTTATGTTAC+GGG 0.429775 8_4:+17772602 None:intergenic
ACATAAGAGTCTTTCTAAAA+GGG 0.447283 8_4:-17769597 Msa1316830:three_prime_UTR
TTCTAAAAGGGTTTACTGAA+AGG 0.464856 8_4:-17769585 Msa1316830:three_prime_UTR
TTGAGAAGAAGAAATTAAAT+GGG 0.467334 8_4:+17769519 None:intergenic
GTTCCCATGGCATGCAGTAA+AGG 0.478755 8_4:+17770241 None:intergenic
CTGGCCTTTACTGCATGCCA+TGG 0.491901 8_4:-17770245 Msa1316830:exon
CTTGTCCGTAATTACTCCTC+TGG 0.492027 8_4:+17770219 None:intergenic
CTCGGCAAGGATCTTACAAA+TGG 0.502574 8_4:+17769548 None:intergenic
GGGAACCAGAGGAGTAATTA+CGG 0.516023 8_4:-17770224 Msa1316830:CDS
CTTGAAAGGAATGGATTTGG+AGG 0.518401 8_4:-17769757 Msa1316830:CDS
AGCAAAGTTGTGGTATTGAA+AGG 0.534487 8_4:-17772528 Msa1316830:five_prime_UTR
AAAGGAATGGATTTGGAGGA+AGG 0.535893 8_4:-17769753 Msa1316830:CDS
GGCCGAAGGCTTGAAAGGAA+TGG 0.548731 8_4:-17769766 Msa1316830:CDS
TGGCCTTTACTGCATGCCAT+GGG 0.552122 8_4:-17770244 Msa1316830:exon
TACTCATTCAACTCCTACAA+AGG 0.554518 8_4:+17769463 None:intergenic
ATGTTGGCCGAAGGCTTGAA+AGG 0.560678 8_4:-17769771 Msa1316830:CDS
GCAGAATAGGCAGAGGATGT+TGG 0.565240 8_4:-17769787 Msa1316830:CDS
ATGGATTTGGAGGAAGGCAA+TGG 0.569370 8_4:-17769747 Msa1316830:CDS
GGAGTATAAGCCGGAAAACA+GGG 0.569718 8_4:-17772645 None:intergenic
AAATTAAATGGGAAATCCCT+CGG 0.575534 8_4:+17769530 None:intergenic
AATTACTCCTCTGGTTCCCA+TGG 0.583145 8_4:+17770228 None:intergenic
GACAAAAGCAGAATAGGCAG+AGG 0.586343 8_4:-17769794 Msa1316830:CDS
CGAATCAGTAAGCAAAGTTG+TGG 0.617364 8_4:-17772538 Msa1316830:five_prime_UTR
CTGCATGCCATGGGAACCAG+AGG 0.620238 8_4:-17770235 Msa1316830:exon
AGATTTCGGGACACAACGCA+AGG 0.624629 8_4:+17772569 None:intergenic
GTTGTGGTATTGAAAGGACA+AGG 0.629577 8_4:-17772522 Msa1316830:five_prime_UTR
ATTTGTAAGATCCTTGCCGA+GGG 0.635314 8_4:-17769546 Msa1316830:three_prime_UTR
GAGGAGTAATTACGGACAAG+TGG 0.636089 8_4:-17770216 Msa1316830:CDS
AAATGGGAAATCCCTCGGCA+AGG 0.641322 8_4:+17769535 None:intergenic
AGGCAGAGGATGTTGGCCGA+AGG 0.646645 8_4:-17769780 Msa1316830:CDS
TCATTCAACTCCTACAAAGG+AGG 0.662922 8_4:+17769466 None:intergenic
CATTTGTAAGATCCTTGCCG+AGG 0.665215 8_4:-17769547 Msa1316830:three_prime_UTR
ATTGAAAGGACAAGGTTCCG+AGG 0.668650 8_4:-17772514 Msa1316830:intron
GAGTATAAGCCGGAAAACAG+GGG 0.670401 8_4:-17772644 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTGTTAATTAAATGATTT+TGG - chr8_4:17769651-17769670 Msa1316830:three_prime_UTR 15.0%
!!! TCGTTGATTTAAATTATTAT+TGG - chr8_4:17769846-17769865 Msa1316830:intron 15.0%
!!! TCATTTCATTGATTTTGAAT+TGG - chr8_4:17769534-17769553 Msa1316830:three_prime_UTR 20.0%
!!! CATTTCATTGATTTTGAATT+GGG - chr8_4:17769535-17769554 Msa1316830:three_prime_UTR 20.0%
!! TTAATTAACAATGCTTACTT+AGG + chr8_4:17769644-17769663 None:intergenic 20.0%
!! ATTTGTAATTAGTAAAGATG+AGG - chr8_4:17769723-17769742 Msa1316830:exon 20.0%
!! TCCAAACTAAGAATATATAT+GGG + chr8_4:17770583-17770602 None:intergenic 20.0%
!! TTCCAAACTAAGAATATATA+TGG + chr8_4:17770584-17770603 None:intergenic 20.0%
!!! TATTTTGAACTTCAATAACA+TGG - chr8_4:17770605-17770624 Msa1316830:intron 20.0%
!!! TAACATGGTCATTATATTTT+AGG - chr8_4:17770620-17770639 Msa1316830:intron 20.0%
!! AAATGTAGCTTCTTAAAAAT+AGG - chr8_4:17770847-17770866 Msa1316830:intron 20.0%
!! AATGTAGCTTCTTAAAAATA+GGG - chr8_4:17770848-17770867 Msa1316830:intron 20.0%
!!! TATTTCTGTTTGTTAAAAGT+AGG - chr8_4:17770939-17770958 Msa1316830:intron 20.0%
!!! ATTTCTGTTTGTTAAAAGTA+GGG - chr8_4:17770940-17770959 Msa1316830:intron 20.0%
!! GAAAAAAAGAATATTCTCAA+AGG + chr8_4:17771556-17771575 None:intergenic 20.0%
!!! ATTCTTTATTTTACAGCAAT+AGG + chr8_4:17771578-17771597 None:intergenic 20.0%
!! ATTCTTTCTTACTCAAATAA+AGG - chr8_4:17771676-17771695 Msa1316830:intron 20.0%
!!! TACATTTAAGTTTGTTAACA+AGG + chr8_4:17771902-17771921 None:intergenic 20.0%
!! TTGAGAAGAAGAAATTAAAT+GGG + chr8_4:17772488-17772507 None:intergenic 20.0%
!! TGTTAAAATTGTATACTTTC+AGG - chr8_4:17772576-17772595 Msa1316830:five_prime_UTR 20.0%
!!! GCTAACATTGTTATTTTTTT+AGG - chr8_4:17772633-17772652 Msa1316830:five_prime_UTR 20.0%
!!! ATAGAAAAGAAAAAGTACCT+CGG + chr8_4:17769510-17769529 None:intergenic 25.0%
!! ATTATGCTCTATTTTCATAG+TGG + chr8_4:17770306-17770325 None:intergenic 25.0%
! TTAATAAGACAGAGGAAAAA+TGG + chr8_4:17770459-17770478 None:intergenic 25.0%
! AAGAATATATATGGGTGAAT+AGG + chr8_4:17770575-17770594 None:intergenic 25.0%
! ACCCATATATATTCTTAGTT+TGG - chr8_4:17770579-17770598 Msa1316830:intron 25.0%
!!! TTATGTCGATATTGTTTCTA+TGG - chr8_4:17770795-17770814 Msa1316830:intron 25.0%
! GCAAAAGATAAATCAAACAT+AGG - chr8_4:17770903-17770922 Msa1316830:intron 25.0%
! TGGTTGTATTATTATAGAAG+TGG - chr8_4:17770987-17771006 Msa1316830:intron 25.0%
! TTGTATTATTATAGAAGTGG+TGG - chr8_4:17770990-17771009 Msa1316830:intron 25.0%
! ACAAGAAAAATGCAAAATTC+AGG - chr8_4:17771162-17771181 Msa1316830:intron 25.0%
! CAAGAAAAATGCAAAATTCA+GGG - chr8_4:17771163-17771182 Msa1316830:intron 25.0%
! AGGATATAGAATATGAATGA+AGG - chr8_4:17771357-17771376 Msa1316830:intron 25.0%
! AAGGATTATTAGTGTTTAAG+AGG - chr8_4:17771376-17771395 Msa1316830:intron 25.0%
! GTTAAGTTCTGTAGTTATTA+TGG - chr8_4:17771424-17771443 Msa1316830:intron 25.0%
!!! TTTTTTAAATAGCCCTCAAT+TGG - chr8_4:17771460-17771479 Msa1316830:intron 25.0%
! GTTTATATACAACAAGTGTT+AGG + chr8_4:17771704-17771723 None:intergenic 25.0%
!! CAACTTTAATCTGAAATGAA+CGG + chr8_4:17771739-17771758 None:intergenic 25.0%
! AAGAAGGTTCCATTAATAAA+GGG + chr8_4:17771871-17771890 None:intergenic 25.0%
! AAAGAAGGTTCCATTAATAA+AGG + chr8_4:17771872-17771891 None:intergenic 25.0%
!! TGTTTTACGATACGTTATTT+AGG - chr8_4:17772059-17772078 Msa1316830:intron 25.0%
!! GTTTTACGATACGTTATTTA+GGG - chr8_4:17772060-17772079 Msa1316830:intron 25.0%
!! GGTAAACTATTTTCAAATAG+CGG - chr8_4:17772081-17772100 Msa1316830:intron 25.0%
!!! CAACAGATTTGATGTTTTAA+TGG + chr8_4:17772387-17772406 None:intergenic 25.0%
!! ACATAAGAGTCTTTCTAAAA+GGG - chr8_4:17772407-17772426 Msa1316830:intron 25.0%
! GTTGAGAAGAAGAAATTAAA+TGG + chr8_4:17772489-17772508 None:intergenic 25.0%
!!! TTTTTCTCCTCTTTTTGAAA+CGG - chr8_4:17772606-17772625 Msa1316830:five_prime_UTR 25.0%
TTCGCTAACGATTTATGTTA+CGG + chr8_4:17769406-17769425 None:intergenic 30.0%
AATAGAGCATAATGTTCAAC+AGG - chr8_4:17770313-17770332 Msa1316830:intron 30.0%
AAAAAATAAATGAGGGAAGC+GGG + chr8_4:17770488-17770507 None:intergenic 30.0%
GAAAAAATAAATGAGGGAAG+CGG + chr8_4:17770489-17770508 None:intergenic 30.0%
GGCAGTGAAAAAATAAATGA+GGG + chr8_4:17770495-17770514 None:intergenic 30.0%
AGGCAGTGAAAAAATAAATG+AGG + chr8_4:17770496-17770515 None:intergenic 30.0%
AATATTTGAGAAAGCCAATG+CGG + chr8_4:17770777-17770796 None:intergenic 30.0%
ATCCATTTAGTGTCAACTAT+TGG - chr8_4:17771053-17771072 Msa1316830:intron 30.0%
AACCAATAGTTGACACTAAA+TGG + chr8_4:17771058-17771077 None:intergenic 30.0%
AACCTTGAAGACAGAATATA+GGG + chr8_4:17771088-17771107 None:intergenic 30.0%
TATATTCTGTCTTCAAGGTT+GGG - chr8_4:17771088-17771107 Msa1316830:intron 30.0%
AAAAATGCAAAATTCAGGGA+TGG - chr8_4:17771167-17771186 Msa1316830:intron 30.0%
TTCAGAGACTATATTTAGGA+TGG + chr8_4:17771201-17771220 None:intergenic 30.0%
AGCATTCAGAGACTATATTT+AGG + chr8_4:17771205-17771224 None:intergenic 30.0%
!! ACTTGTTTGATTTGAGTTGA+TGG - chr8_4:17771275-17771294 Msa1316830:intron 30.0%
CTCAATAGTTCAACAAATTG+TGG - chr8_4:17771306-17771325 Msa1316830:intron 30.0%
! AAATTGTGGTTAGTTCTCTT+TGG - chr8_4:17771320-17771339 Msa1316830:intron 30.0%
ACTGATTAATCCAATGTGAA+AGG - chr8_4:17771522-17771541 Msa1316830:intron 30.0%
TCATTTCAGATTAAAGTTGC+TGG - chr8_4:17771740-17771759 Msa1316830:intron 30.0%
CATTCTAGACCCTTTATTAA+TGG - chr8_4:17771859-17771878 Msa1316830:intron 30.0%
TAACAGCTATCTAACAACAT+CGG + chr8_4:17772009-17772028 None:intergenic 30.0%
TAGAAAGACAAAAGCAGAAT+AGG - chr8_4:17772204-17772223 Msa1316830:intron 30.0%
GACATAAGAGTCTTTCTAAA+AGG - chr8_4:17772406-17772425 Msa1316830:intron 30.0%
! TTCTAAAAGGGTTTACTGAA+AGG - chr8_4:17772419-17772438 Msa1316830:intron 30.0%
AAATTAAATGGGAAATCCCT+CGG + chr8_4:17772477-17772496 None:intergenic 30.0%
TCGCTAACGATTTATGTTAC+GGG + chr8_4:17769405-17769424 None:intergenic 35.0%
! AGCAAAGTTGTGGTATTGAA+AGG - chr8_4:17769476-17769495 Msa1316830:three_prime_UTR 35.0%
ATGACCTTGTAATTGTGTAC+TGG - chr8_4:17769939-17769958 Msa1316830:intron 35.0%
AAGACCAGTACACAATTACA+AGG + chr8_4:17769946-17769965 None:intergenic 35.0%
!! TAATTGTGTACTGGTCTTAG+AGG - chr8_4:17769948-17769967 Msa1316830:intron 35.0%
! TTGAGTAGTTTGTGCAATGT+TGG - chr8_4:17769978-17769997 Msa1316830:intron 35.0%
TTGAGGGAAACATATACTGA+TGG - chr8_4:17770023-17770042 Msa1316830:intron 35.0%
!! ATGGTGTTATCACTAGTTTG+TGG - chr8_4:17770042-17770061 Msa1316830:intron 35.0%
GAAAAATGGATGTGTCAACA+AGG + chr8_4:17770445-17770464 None:intergenic 35.0%
TGATAACCGTGAAAAACTGT+AGG + chr8_4:17770516-17770535 None:intergenic 35.0%
TGTGCTTTGTAGATGTTTGT+TGG - chr8_4:17770713-17770732 Msa1316830:intron 35.0%
ATATTTGAGAAAGCCAATGC+GGG + chr8_4:17770776-17770795 None:intergenic 35.0%
!! TGTCGATATTGTTTCTATGG+TGG - chr8_4:17770798-17770817 Msa1316830:intron 35.0%
AAATAGGGTCAAATGTGCAT+TGG - chr8_4:17770863-17770882 Msa1316830:intron 35.0%
! TGTGCATTGGAAAGCAATTT+TGG - chr8_4:17770876-17770895 Msa1316830:intron 35.0%
CAACCTTGAAGACAGAATAT+AGG + chr8_4:17771089-17771108 None:intergenic 35.0%
CTATATTCTGTCTTCAAGGT+TGG - chr8_4:17771087-17771106 Msa1316830:intron 35.0%
ATTGCCATGAAACTACAGAT+GGG - chr8_4:17771134-17771153 Msa1316830:intron 35.0%
!! CTTTGGCTAAACTTGTTGTT+AGG - chr8_4:17771337-17771356 Msa1316830:intron 35.0%
!! ATTAGTGTTTAAGAGGTGTC+AGG - chr8_4:17771383-17771402 Msa1316830:intron 35.0%
!! TTAGTGTTTAAGAGGTGTCA+GGG - chr8_4:17771384-17771403 Msa1316830:intron 35.0%
!! GGGATAGCTTTGAATAATTG+AGG - chr8_4:17771493-17771512 Msa1316830:intron 35.0%
!! AAGTTTGTTAACAAGGCTTC+AGG + chr8_4:17771895-17771914 None:intergenic 35.0%
!!! ACTATAGCACTTTTTCGTAG+TGG - chr8_4:17772114-17772133 Msa1316830:intron 35.0%
TACTCATTCAACTCCTACAA+AGG + chr8_4:17772544-17772563 None:intergenic 35.0%
AGCATAACCGTTTCAAAAAG+AGG + chr8_4:17772616-17772635 None:intergenic 35.0%
ATTCGCCAGAAACAGATTTC+GGG + chr8_4:17769451-17769470 None:intergenic 40.0%
GATTCGCCAGAAACAGATTT+CGG + chr8_4:17769452-17769471 None:intergenic 40.0%
CGAATCAGTAAGCAAAGTTG+TGG - chr8_4:17769466-17769485 Msa1316830:three_prime_UTR 40.0%
! GTTGTGGTATTGAAAGGACA+AGG - chr8_4:17769482-17769501 Msa1316830:three_prime_UTR 40.0%
GTCGTGTTTGATGTTTGTGT+CGG - chr8_4:17769884-17769903 Msa1316830:intron 40.0%
GTGCTTCATAGACTTAGTAG+AGG - chr8_4:17769906-17769925 Msa1316830:intron 40.0%
! TGTGCAATGTTGGTTGTTTG+AGG - chr8_4:17769988-17770007 Msa1316830:intron 40.0%
TGAGGAGAGAAACTGTATTG+AGG - chr8_4:17770006-17770025 Msa1316830:intron 40.0%
GAGGAGAGAAACTGTATTGA+GGG - chr8_4:17770007-17770026 Msa1316830:intron 40.0%
TTGTGGCAAGAATCACAGAT+AGG - chr8_4:17770059-17770078 Msa1316830:intron 40.0%
GCAAGAATCACAGATAGGAA+GGG - chr8_4:17770064-17770083 Msa1316830:intron 40.0%
! AGCAGCTTTTTGACAACACA+GGG + chr8_4:17770103-17770122 None:intergenic 40.0%
! TAGCAGCTTTTTGACAACAC+AGG + chr8_4:17770104-17770123 None:intergenic 40.0%
AATAGTAGCTATAACGCCAC+TGG - chr8_4:17770210-17770229 Msa1316830:CDS 40.0%
GATCCTCAATTGACAACACT+AGG - chr8_4:17770267-17770286 Msa1316830:intron 40.0%
! TATTTTCATAGTGGTGACCG+TGG + chr8_4:17770297-17770316 None:intergenic 40.0%
AGAGCATAATGTTCAACAGG+CGG - chr8_4:17770316-17770335 Msa1316830:intron 40.0%
!! GTTGATAGCAAAGCTACTGA+AGG - chr8_4:17770384-17770403 Msa1316830:intron 40.0%
GGCTCAAGTTAATAAGACAG+AGG + chr8_4:17770467-17770486 None:intergenic 40.0%
! TCACTGCCTACAGTTTTTCA+CGG - chr8_4:17770507-17770526 Msa1316830:intron 40.0%
CACAGATTCGACATGAGTAT+TGG + chr8_4:17770692-17770711 None:intergenic 40.0%
GGTTGAGTCTTAGAAGAGAT+AGG - chr8_4:17770734-17770753 Msa1316830:intron 40.0%
CTGCAATATGCATTGTAGCA+TGG - chr8_4:17770967-17770986 Msa1316830:intron 40.0%
!! ATGGATCACTTTTCCCTTTC+AGG + chr8_4:17771039-17771058 None:intergenic 40.0%
TGCCCTATATTCTGTCTTCA+AGG - chr8_4:17771083-17771102 Msa1316830:intron 40.0%
GATTGCCATGAAACTACAGA+TGG - chr8_4:17771133-17771152 Msa1316830:intron 40.0%
TTGCCATGAAACTACAGATG+GGG - chr8_4:17771135-17771154 Msa1316830:intron 40.0%
TGCAAAATTCAGGGATGGAT+TGG - chr8_4:17771172-17771191 Msa1316830:intron 40.0%
TAGTCTCTGAATGCTTTAGC+TGG - chr8_4:17771210-17771229 Msa1316830:intron 40.0%
AAATAGCCCTCAATTGGTAG+AGG - chr8_4:17771466-17771485 Msa1316830:intron 40.0%
AGTGGTCTATGAGAGTTCTT+TGG - chr8_4:17771806-17771825 Msa1316830:intron 40.0%
GTGGTCTATGAGAGTTCTTT+GGG - chr8_4:17771807-17771826 Msa1316830:intron 40.0%
TAACAAGGCTTCAGGAAAGA+AGG + chr8_4:17771887-17771906 None:intergenic 40.0%
AGATAGCTGTTATAGCGTAG+TGG - chr8_4:17772017-17772036 Msa1316830:intron 40.0%
ACACTGTACTATACCTGTCT+AGG - chr8_4:17772164-17772183 Msa1316830:intron 40.0%
TACCTGTCTAGGTCTGTATA+TGG - chr8_4:17772175-17772194 Msa1316830:intron 40.0%
AACCATATACAGACCTAGAC+AGG + chr8_4:17772180-17772199 None:intergenic 40.0%
ATCCATTCCTTTCAAGCCTT+CGG + chr8_4:17772243-17772262 None:intergenic 40.0%
! AGGCTTGAAAGGAATGGATT+TGG - chr8_4:17772244-17772263 Msa1316830:intron 40.0%
! CTTGAAAGGAATGGATTTGG+AGG - chr8_4:17772247-17772266 Msa1316830:intron 40.0%
! AAAGGAATGGATTTGGAGGA+AGG - chr8_4:17772251-17772270 Msa1316830:intron 40.0%
ATTTGTAAGATCCTTGCCGA+GGG - chr8_4:17772458-17772477 Msa1316830:intron 40.0%
TCATTCAACTCCTACAAAGG+AGG + chr8_4:17772541-17772560 None:intergenic 40.0%
TGTGTCCCGAAATCTGTTTC+TGG - chr8_4:17769443-17769462 Msa1316830:three_prime_UTR 45.0%
ATTGAAAGGACAAGGTTCCG+AGG - chr8_4:17769490-17769509 Msa1316830:three_prime_UTR 45.0%
AGTCAGAGACCTCTGTAACA+CGG - chr8_4:17769766-17769785 Msa1316830:CDS 45.0%
GGCAAGAATCACAGATAGGA+AGG - chr8_4:17770063-17770082 Msa1316830:intron 45.0%
AGCGTATTGCAGAACAAGAG+CGG + chr8_4:17770169-17770188 None:intergenic 45.0%
GGACCTAGTGTTGTCAATTG+AGG + chr8_4:17770273-17770292 None:intergenic 45.0%
ATAATGTTCAACAGGCGGAG+AGG - chr8_4:17770321-17770340 Msa1316830:intron 45.0%
TAATGTTCAACAGGCGGAGA+GGG - chr8_4:17770322-17770341 Msa1316830:intron 45.0%
! TTCTCTAAGCTTGTTTCCCC+TGG + chr8_4:17770410-17770429 None:intergenic 45.0%
GGGAAACAAGCTTAGAGAAC+AGG - chr8_4:17770411-17770430 Msa1316830:intron 45.0%
! GTGGAATGACATGGGTTAAG+TGG + chr8_4:17770547-17770566 None:intergenic 45.0%
AGGTTGCAGTGGAATGACAT+GGG + chr8_4:17770555-17770574 None:intergenic 45.0%
TAGGTTGCAGTGGAATGACA+TGG + chr8_4:17770556-17770575 None:intergenic 45.0%
TATGGGTGAATAGGTTGCAG+TGG + chr8_4:17770566-17770585 None:intergenic 45.0%
!! TCCTAGCTTCCATTTTGACG+CGG + chr8_4:17770828-17770847 None:intergenic 45.0%
TAGAAGTGGTGGTTGCTTGA+AGG - chr8_4:17771001-17771020 Msa1316830:intron 45.0%
CATGAAACTACAGATGGGGT+GGG - chr8_4:17771139-17771158 Msa1316830:intron 45.0%
AGGTGTCAGGGAAGTTAGTT+AGG - chr8_4:17771396-17771415 Msa1316830:intron 45.0%
GGTGTCAGGGAAGTTAGTTA+GGG - chr8_4:17771397-17771416 Msa1316830:intron 45.0%
GTGTCAGGGAAGTTAGTTAG+GGG - chr8_4:17771398-17771417 Msa1316830:intron 45.0%
TGTCAGGGAAGTTAGTTAGG+GGG - chr8_4:17771399-17771418 Msa1316830:intron 45.0%
CCTTCTCCTCTACCAATTGA+GGG + chr8_4:17771475-17771494 None:intergenic 45.0%
CCTCAATTGGTAGAGGAGAA+GGG - chr8_4:17771473-17771492 Msa1316830:intron 45.0%
GGAGAACTCTCCTTTCACAT+TGG + chr8_4:17771535-17771554 None:intergenic 45.0%
! AATTACTCCTCTGGTTCCCA+TGG + chr8_4:17771779-17771798 None:intergenic 45.0%
GGGAACCAGAGGAGTAATTA+CGG - chr8_4:17771780-17771799 Msa1316830:intron 45.0%
CTTGTCCGTAATTACTCCTC+TGG + chr8_4:17771788-17771807 None:intergenic 45.0%
GAGGAGTAATTACGGACAAG+TGG - chr8_4:17771788-17771807 Msa1316830:intron 45.0%
GTTCTTTGGGCTTGTGCTAT+TGG - chr8_4:17771820-17771839 Msa1316830:intron 45.0%
GACAAAAGCAGAATAGGCAG+AGG - chr8_4:17772210-17772229 Msa1316830:intron 45.0%
ATGGATTTGGAGGAAGGCAA+TGG - chr8_4:17772257-17772276 Msa1316830:intron 45.0%
CTCGGCAAGGATCTTACAAA+TGG + chr8_4:17772459-17772478 None:intergenic 45.0%
CATTTGTAAGATCCTTGCCG+AGG - chr8_4:17772457-17772476 Msa1316830:intron 45.0%
GTGATTGCTACCTCCTTTGT+AGG - chr8_4:17772528-17772547 Msa1316830:five_prime_UTR 45.0%
AGATTTCGGGACACAACGCA+AGG + chr8_4:17769438-17769457 None:intergenic 50.0%
!! CAGAAGTGTCCGTGTTACAG+AGG + chr8_4:17769778-17769797 None:intergenic 50.0%
CTCTGTAACACGGACACTTC+TGG - chr8_4:17769776-17769795 Msa1316830:CDS 50.0%
CTTCTGGTGAAAGACGTGTC+TGG - chr8_4:17769792-17769811 Msa1316830:CDS 50.0%
GCTATAACGCCACTGGAACT+TGG - chr8_4:17770217-17770236 Msa1316830:CDS 50.0%
ATAACGCCACTGGAACTTGG+TGG - chr8_4:17770220-17770239 Msa1316830:CDS 50.0%
CAAACTCCACCAAGTTCCAG+TGG + chr8_4:17770229-17770248 None:intergenic 50.0%
TGACAACACTAGGTCCACCA+CGG - chr8_4:17770277-17770296 Msa1316830:intron 50.0%
TTTCATAGTGGTGACCGTGG+TGG + chr8_4:17770294-17770313 None:intergenic 50.0%
TAGCAAAGCTACTGAAGGCC+AGG - chr8_4:17770389-17770408 Msa1316830:intron 50.0%
AGCAAAGCTACTGAAGGCCA+GGG - chr8_4:17770390-17770409 Msa1316830:intron 50.0%
AAAATCAGTCGAGCCCGCAT+TGG - chr8_4:17770760-17770779 Msa1316830:intron 50.0%
!! CCTAGCTTCCATTTTGACGC+GGG + chr8_4:17770827-17770846 None:intergenic 50.0%
GTTGCTTGAAGGAGACGTGT+GGG - chr8_4:17771012-17771031 Msa1316830:intron 50.0%
CCACCCCATCTGTAGTTTCA+TGG + chr8_4:17771141-17771160 None:intergenic 50.0%
CCATGAAACTACAGATGGGG+TGG - chr8_4:17771138-17771157 Msa1316830:intron 50.0%
CCCTCAATTGGTAGAGGAGA+AGG - chr8_4:17771472-17771491 Msa1316830:intron 50.0%
CCCTTCTCCTCTACCAATTG+AGG + chr8_4:17771476-17771495 None:intergenic 50.0%
TGGCCTTTACTGCATGCCAT+GGG - chr8_4:17771760-17771779 Msa1316830:intron 50.0%
GTTCCCATGGCATGCAGTAA+AGG + chr8_4:17771766-17771785 None:intergenic 50.0%
GCAGAATAGGCAGAGGATGT+TGG - chr8_4:17772217-17772236 Msa1316830:intron 50.0%
ATGTTGGCCGAAGGCTTGAA+AGG - chr8_4:17772233-17772252 Msa1316830:intron 50.0%
AAATGGGAAATCCCTCGGCA+AGG + chr8_4:17772472-17772491 None:intergenic 50.0%
GCAAAGCTACTGAAGGCCAG+GGG - chr8_4:17770391-17770410 Msa1316830:intron 55.0%
GGTGGAAACCCGCGTCAAAA+TGG - chr8_4:17770816-17770835 Msa1316830:intron 55.0%
CCCGCGTCAAAATGGAAGCT+AGG - chr8_4:17770824-17770843 Msa1316830:intron 55.0%
GGTTGCTTGAAGGAGACGTG+TGG - chr8_4:17771011-17771030 Msa1316830:intron 55.0%
GAGACGTGTGGGTCCTGAAA+GGG - chr8_4:17771023-17771042 Msa1316830:intron 55.0%
! CTGGCCTTTACTGCATGCCA+TGG - chr8_4:17771759-17771778 Msa1316830:intron 55.0%
GGCCGAAGGCTTGAAAGGAA+TGG - chr8_4:17772238-17772257 Msa1316830:intron 55.0%
GGAGACGTGTGGGTCCTGAA+AGG - chr8_4:17771022-17771041 Msa1316830:intron 60.0%
CTGCATGCCATGGGAACCAG+AGG - chr8_4:17771769-17771788 Msa1316830:intron 60.0%
AGGCAGAGGATGTTGGCCGA+AGG - chr8_4:17772224-17772243 Msa1316830:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 17769370 17772656 17769370 ID=Msa1316830;Name=Msa1316830
chr8_4 mRNA 17769370 17772656 17769370 ID=Msa1316830-mRNA-1;Parent=Msa1316830;Name=Msa1316830-mRNA-1;_AED=0.00;_eAED=0.00;_QI=171|1|1|1|0.5|0.66|3|364|60
chr8_4 exon 17769370 17769840 17769370 ID=Msa1316830-mRNA-1:exon:6459;Parent=Msa1316830-mRNA-1
chr8_4 exon 17770173 17770277 17770173 ID=Msa1316830-mRNA-1:exon:6458;Parent=Msa1316830-mRNA-1
chr8_4 exon 17772515 17772656 17772515 ID=Msa1316830-mRNA-1:exon:6457;Parent=Msa1316830-mRNA-1
chr8_4 five_prime_UTR 17772515 17772656 17772515 ID=Msa1316830-mRNA-1:five_prime_utr;Parent=Msa1316830-mRNA-1
chr8_4 five_prime_UTR 17770249 17770277 17770249 ID=Msa1316830-mRNA-1:five_prime_utr;Parent=Msa1316830-mRNA-1
chr8_4 CDS 17770173 17770248 17770173 ID=Msa1316830-mRNA-1:cds;Parent=Msa1316830-mRNA-1
chr8_4 CDS 17769734 17769840 17769734 ID=Msa1316830-mRNA-1:cds;Parent=Msa1316830-mRNA-1
chr8_4 three_prime_UTR 17769370 17769733 17769370 ID=Msa1316830-mRNA-1:three_prime_utr;Parent=Msa1316830-mRNA-1
Gene Sequence

>Msa1316830

ATGGGAACCAGAGGAGTAATTACGGACAAGTGGTCTATGAGAGTTCTTTGGGCTTGTGCTATTGGAAGTGCTGTTAGTCTGTATATGGTTGCTGTAGAAAGACAAAAGCAGAATAGGCAGAGGATGTTGGCCGAAGGCTTGAAAGGAATGGATTTGGAGGAAGGCAATGGTGAAAATGTTTGA

Protein sequence

>Msa1316830

MGTRGVITDKWSMRVLWACAIGSAVSLYMVAVERQKQNRQRMLAEGLKGMDLEEGNGENV*