AlfalfaGEDB | Msa0184960

M. sativa cultivar zhongmu-4 / Msa0184960

KEGG: -
GO: -
PFAM: PF14966.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0184960	XP_013458796.1	95.610	205	8	1	1	205	1	204	3.52e-140	399

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0184960	A0A072UUU4	95.610	205	8	1	1	205	1	204	1.68e-140	399

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002490	Msa0184960	0.800865	1.179600e-48	-8.615850e-47
Msa0004860	Msa0184960	0.801192	1.010881e-48	-8.615850e-47
Msa0004920	Msa0184960	0.813864	2.062772e-51	-8.615850e-47
Msa0006000	Msa0184960	0.804801	1.814303e-49	-8.615850e-47
Msa0008410	Msa0184960	0.815231	1.027611e-51	-8.615850e-47
Msa0015300	Msa0184960	0.834375	3.109112e-56	-8.615850e-47
Msa0017510	Msa0184960	0.826149	3.178392e-54	-8.615850e-47
Msa0020930	Msa0184960	0.803944	2.737062e-49	-8.615850e-47
Msa0037700	Msa0184960	0.804754	1.856059e-49	-8.615850e-47
Msa0040450	Msa0184960	0.807221	5.619277e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0184960	MtrunA17_Chr3g0078281	95.610	205	8	1	1	205	1	204	3.24e-144	399

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0184960	AT5G04910.1	69.780	182	55	0	24	205	41	222	1.20e-83	247

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Find 58 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCTTATTCCAAACTCAAA+AGG	0.441845	1_4:-74577545	Msa0184960:intron
AAGGAGATCACTGAAGCTTC+TGG	0.308239	1_4:-74573648	Msa0184960:CDS
AATTTACAAACGACACAAGA+AGG	0.535507	1_4:-74577761	Msa0184960:five_prime_UTR
ACAACCAGTGGAATGTACAT+AGG	0.597483	1_4:-74573430	Msa0184960:three_prime_UTR
ACAAGTAATTTATATTAAAA+TGG	0.239680	1_4:-74573374	Msa0184960:three_prime_UTR
ACACAAGAAGGGTGCCGTTT+TGG	0.333658	1_4:-74577749	Msa0184960:five_prime_UTR
ACGAAGCAAAACAGCGATTT+TGG	0.256682	1_4:+74577599	None:intergenic
ACTTGAAGCAGAGTAATACT+TGG	0.577210	1_4:-74573502	Msa0184960:exon
ACTTTATTACTTGATTGTAA+TGG	0.416431	1_4:-74573309	Msa0184960:three_prime_UTR
AGATCAATGCGGCTATAGTC+AGG	0.401278	1_4:+74576118	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTACAAACGACACAAGAA+GGG	-	chr1_4:74573144-74573163	Msa0184960:three_prime_UTR	30.0%
AAGCTTATTCCAAACTCAAA+AGG	-	chr1_4:74573359-74573378	Msa0184960:three_prime_UTR	30.0%
TAGCTTCTGTAAAATCACTA+TGG	+	chr1_4:74573732-74573751	None:intergenic	30.0%
ATAGCCTATGTTTAGTATCA+CGG	+	chr1_4:74573809-74573828	None:intergenic	30.0%
TATATCAATGTTGTCAACAG+TGG	-	chr1_4:74573826-74573845	Msa0184960:intron	30.0%
TCAAAATTCCAAAAACATGC+TGG	+	chr1_4:74574116-74574135	None:intergenic	30.0%
CGTAAGTTAACTTCAATCTT+AGG	-	chr1_4:74574384-74574403	Msa0184960:intron	30.0%
CAATGTATTAATAGGGCTAT+TGG	-	chr1_4:74574457-74574476	Msa0184960:intron	30.0%
TGACATTGAAATTTGACACT+TGG	-	chr1_4:74574523-74574542	Msa0184960:intron	30.0%
AAGAAATGTGCTTAAACTAG+GGG	+	chr1_4:74574869-74574888	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	74573144	74577782	74573144	ID=Msa0184960;Name=Msa0184960
chr1_4	mRNA	74573144	74577782	74573144	ID=Msa0184960-mRNA-1;Parent=Msa0184960;Name=Msa0184960-mRNA-1;_AED=0.13;_eAED=0.13;_QI=88\|1\|1\|1\|1\|1\|4\|365\|205
chr1_4	exon	74573144	74573778	74573144	ID=Msa0184960-mRNA-1:exon:25480;Parent=Msa0184960-mRNA-1
chr1_4	exon	74576066	74576170	74576066	ID=Msa0184960-mRNA-1:exon:25479;Parent=Msa0184960-mRNA-1
chr1_4	exon	74576284	74576377	74576284	ID=Msa0184960-mRNA-1:exon:25478;Parent=Msa0184960-mRNA-1
chr1_4	exon	74577546	74577782	74577546	ID=Msa0184960-mRNA-1:exon:25477;Parent=Msa0184960-mRNA-1
chr1_4	five_prime_UTR	74577695	74577782	74577695	ID=Msa0184960-mRNA-1:five_prime_utr;Parent=Msa0184960-mRNA-1
chr1_4	CDS	74577546	74577694	74577546	ID=Msa0184960-mRNA-1:cds;Parent=Msa0184960-mRNA-1
chr1_4	CDS	74576284	74576377	74576284	ID=Msa0184960-mRNA-1:cds;Parent=Msa0184960-mRNA-1
chr1_4	CDS	74576066	74576170	74576066	ID=Msa0184960-mRNA-1:cds;Parent=Msa0184960-mRNA-1
chr1_4	CDS	74573509	74573778	74573509	ID=Msa0184960-mRNA-1:cds;Parent=Msa0184960-mRNA-1
chr1_4	three_prime_UTR	74573144	74573508	74573144	ID=Msa0184960-mRNA-1:three_prime_utr;Parent=Msa0184960-mRNA-1

Gene Sequence

>Msa0184960

ATGGAAGAAGATTTGGAATTTGGGAAGAAGGTTTCGATAAACGACGACACAATGGAAGTAGTAGTTGATTCCACCAAAATCGCTGTTTTGCTTCGTAGTTTTCTCGATATTCAACAACGCAGAGCTCAAGCTTATTCCAAACTCAAAAGTGGATTTTCTGACTACATGACTTCTGGAGGGGAATTGGCTTATCAGCAGCTTTGCAGTGGAATCACATCAGAGTTTAATGATTGCTCAAAAAAGGTCCGTGAAATGGAGTCGTTGTTTCAGAGCCCTGACTATAGCCGCATTGATCTAGCACAAATCCTTAGAGCTGTTCAAGAACAGGAAAAGCAGAAACTACATCTGACAGCTACCCTTCAGCTGTTAAAGAAAGCGGGTCGGCCATCCGAACGACTGGTAAGCCATGATAATTGCAAATTTACAAAGCCAACAGAGCATGAGTGTGTCCATGTTAAGGAGATCACTGAAGCTTCTGGGACTGAAGAAGCAGAAGCGGATGCCGAGTATGATAATGCTGTGAATGAAGCTATTAGAGGTGTCCAGGATGCTGTCATGGTCATCAATGAACATCTAGAAGAAGTCAGATATGAGATTGAAGCACTTGAAGCAGAGTAA

Protein sequence

>Msa0184960

MEEDLEFGKKVSINDDTMEVVVDSTKIAVLLRSFLDIQQRRAQAYSKLKSGFSDYMTSGGELAYQQLCSGITSEFNDCSKKVREMESLFQSPDYSRIDLAQILRAVQEQEKQKLHLTATLQLLKKAGRPSERLVSHDNCKFTKPTEHECVHVKEITEASGTEEAEADAEYDNAVNEAIRGVQDAVMVINEHLEEVRYEIEALEAE*