Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0962160 | sp|Q9SHY2|YSL7_ARATH | 71.655 | 695 | 181 | 5 | 18 | 706 | 1 | 685 | 0.0 | 1044 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0962160 | G7KKB8 | 97.331 | 712 | 15 | 2 | 1 | 708 | 1 | 712 | 0.0 | 1419 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038020 | Msa0962160 | 0.812425 | 4.266688e-51 | -8.615850e-47 |
| Msa0132240 | Msa0962160 | 0.803414 | 3.526959e-49 | -8.615850e-47 |
| Msa0962160 | Msa1174310 | 0.809122 | 2.211934e-50 | -8.615850e-47 |
| Msa0962160 | Msa1235400 | 0.836641 | 8.308118e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0962160 | MtrunA17_Chr6g0481821 | 97.331 | 712 | 15 | 2 | 1 | 708 | 1 | 712 | 0.0 | 1419 |
| Msa0962160 | MtrunA17_Chr5g0443261 | 72.182 | 683 | 180 | 4 | 28 | 706 | 4 | 680 | 0.0 | 999 |
| Msa0962160 | MtrunA17_Chr3g0109311 | 69.986 | 693 | 201 | 4 | 19 | 706 | 4 | 694 | 0.0 | 982 |
| Msa0962160 | MtrunA17_Chr3g0109321 | 73.313 | 667 | 172 | 4 | 46 | 708 | 26 | 690 | 0.0 | 949 |
| Msa0962160 | MtrunA17_Chr5g0443301 | 72.514 | 553 | 146 | 3 | 158 | 706 | 1 | 551 | 0.0 | 802 |
| Msa0962160 | MtrunA17_Chr7g0224611 | 57.453 | 644 | 260 | 7 | 59 | 693 | 35 | 673 | 0.0 | 768 |
| Msa0962160 | MtrunA17_Chr3g0127441 | 52.967 | 674 | 293 | 7 | 27 | 693 | 7 | 663 | 0.0 | 751 |
| Msa0962160 | MtrunA17_Chr1g0146591 | 51.551 | 677 | 310 | 7 | 31 | 696 | 6 | 675 | 0.0 | 725 |
| Msa0962160 | MtrunA17_Chr1g0146641 | 50.812 | 677 | 315 | 7 | 31 | 696 | 6 | 675 | 0.0 | 721 |
| Msa0962160 | MtrunA17_Chr1g0146651 | 51.657 | 664 | 299 | 8 | 46 | 696 | 18 | 672 | 0.0 | 721 |
| Msa0962160 | MtrunA17_Chr3g0119981 | 51.729 | 665 | 299 | 9 | 46 | 697 | 18 | 673 | 0.0 | 720 |
| Msa0962160 | MtrunA17_Chr1g0189011 | 51.482 | 641 | 296 | 7 | 62 | 695 | 47 | 679 | 0.0 | 711 |
| Msa0962160 | MtrunA17_Chr1g0146601 | 52.410 | 498 | 229 | 5 | 201 | 697 | 261 | 751 | 0.0 | 558 |
| Msa0962160 | MtrunA17_Chr1g0146601 | 43.386 | 189 | 85 | 5 | 27 | 205 | 25 | 201 | 9.87e-39 | 153 |
| Msa0962160 | MtrunA17_Chr5g0443291 | 77.670 | 103 | 23 | 0 | 46 | 148 | 18 | 120 | 1.07e-46 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0962160 | AT1G65730.1 | 71.655 | 695 | 181 | 5 | 18 | 706 | 1 | 685 | 0.0 | 1044 |
| Msa0962160 | AT3G17650.1 | 71.652 | 702 | 177 | 4 | 27 | 706 | 9 | 710 | 0.0 | 1008 |
| Msa0962160 | AT3G17650.2 | 71.652 | 702 | 177 | 4 | 27 | 706 | 9 | 710 | 0.0 | 1008 |
| Msa0962160 | AT1G48370.1 | 71.348 | 712 | 186 | 5 | 13 | 706 | 9 | 720 | 0.0 | 1008 |
| Msa0962160 | AT1G48370.2 | 72.890 | 557 | 143 | 3 | 158 | 706 | 1 | 557 | 0.0 | 820 |
| Msa0962160 | AT3G27020.1 | 58.434 | 664 | 263 | 7 | 38 | 693 | 12 | 670 | 0.0 | 788 |
| Msa0962160 | AT5G41000.1 | 56.744 | 645 | 264 | 7 | 59 | 693 | 28 | 667 | 0.0 | 748 |
| Msa0962160 | AT5G53550.3 | 53.495 | 658 | 287 | 6 | 45 | 694 | 23 | 669 | 0.0 | 745 |
| Msa0962160 | AT5G53550.1 | 53.495 | 658 | 287 | 6 | 45 | 694 | 23 | 669 | 0.0 | 745 |
| Msa0962160 | AT5G53550.6 | 53.495 | 658 | 287 | 6 | 45 | 694 | 23 | 669 | 0.0 | 745 |
| Msa0962160 | AT5G53550.5 | 53.495 | 658 | 287 | 6 | 45 | 694 | 23 | 669 | 0.0 | 745 |
| Msa0962160 | AT5G53550.2 | 53.495 | 658 | 287 | 6 | 45 | 694 | 23 | 669 | 0.0 | 745 |
| Msa0962160 | AT4G24120.1 | 52.478 | 686 | 304 | 8 | 17 | 695 | 2 | 672 | 0.0 | 739 |
| Msa0962160 | AT5G24380.1 | 51.205 | 664 | 311 | 6 | 38 | 693 | 2 | 660 | 0.0 | 722 |
| Msa0962160 | AT5G41000.2 | 54.419 | 645 | 254 | 7 | 59 | 693 | 28 | 642 | 0.0 | 706 |
| Msa0962160 | AT5G53550.4 | 55.426 | 516 | 220 | 4 | 180 | 694 | 1 | 507 | 0.0 | 610 |
| Msa0962160 | AT5G41000.3 | 56.452 | 496 | 207 | 6 | 202 | 693 | 1 | 491 | 0.0 | 577 |
| Msa0962160 | AT5G45450.1 | 66.972 | 218 | 65 | 2 | 490 | 706 | 1 | 212 | 3.67e-99 | 304 |
Find 183 sgRNAs with CRISPR-Local
Find 417 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTGTGTTGTTGCTTCTTC+TGG | 0.151174 | 6_3:+85046823 | Msa0962160:CDS |
| ATGGCAATACCTTTCTATTT+AGG | 0.166528 | 6_3:+85051434 | Msa0962160:CDS |
| TAATGTCTCTGCTGGTCTTT+TGG | 0.168239 | 6_3:+85046708 | Msa0962160:CDS |
| AACAAAGTACATTGAAAATT+TGG | 0.178744 | 6_3:-85051947 | None:intergenic |
| TAATTTCACCTTGTGTCTTT+TGG | 0.182441 | 6_3:+85051186 | Msa0962160:CDS |
| GGTGCTAACTCATACCTTAT+TGG | 0.192771 | 6_3:+85050644 | Msa0962160:CDS |
| TCCTTGGAGGAGTTCTTTCT+TGG | 0.198308 | 6_3:+85050268 | Msa0962160:CDS |
| CCATTGTTGTGCCGATTATT+TGG | 0.212463 | 6_3:-85051157 | None:intergenic |
| GATAGGGTTGATACTTTCTT+AGG | 0.214363 | 6_3:+85051665 | Msa0962160:CDS |
| TCTTAGGAAATTAATTAATT+AGG | 0.217932 | 6_3:+85051681 | Msa0962160:exon |
| GCATGATTTGATTGTCATTT+GGG | 0.227033 | 6_3:+85051882 | Msa0962160:three_prime_UTR |
| TCTTCAGTTTCAGTTTCTTA+TGG | 0.230104 | 6_3:+85049895 | Msa0962160:CDS |
| CTTGTATGAACAGGAGGATT+TGG | 0.238454 | 6_3:+85049020 | Msa0962160:intron |
| TTTGCACCTGCTGTTGCTTC+TGG | 0.245860 | 6_3:+85051539 | Msa0962160:CDS |
| ATGCTTTGTTATATATTCTT+TGG | 0.249346 | 6_3:+85051338 | Msa0962160:CDS |
| CCACGCTCCGATTGAGAAAA+TGG | 0.260199 | 6_3:-85050991 | None:intergenic |
| CAGTGGTTACTTTGCTAGTT+TGG | 0.282368 | 6_3:-85049757 | None:intergenic |
| GTATTCTCTTGTCTAGTAAA+AGG | 0.283358 | 6_3:-85046790 | None:intergenic |
| CTTCAGTTTCAGTTTCTTAT+GGG | 0.288337 | 6_3:+85049896 | Msa0962160:CDS |
| GATTGTGGTAAACTTGATTA+AGG | 0.288358 | 6_3:+85051367 | Msa0962160:CDS |
| CCTTGGAGGAGTTCTTTCTT+GGG | 0.290700 | 6_3:+85050269 | Msa0962160:CDS |
| GTGCTAACTCATACCTTATT+GGG | 0.296695 | 6_3:+85050645 | Msa0962160:CDS |
| AAATTCTCATTCCCTTGAAT+TGG | 0.296956 | 6_3:-85051985 | None:intergenic |
| TGCATGATTTGATTGTCATT+TGG | 0.297920 | 6_3:+85051881 | Msa0962160:three_prime_UTR |
| GGATTTGGGAGTTACCTATT+TGG | 0.309829 | 6_3:+85049035 | Msa0962160:CDS |
| GTCTTTAGATCCTTAAGATT+TGG | 0.313849 | 6_3:-85046392 | None:intergenic |
| TATCAAGGTCTACAAATGAT+AGG | 0.314663 | 6_3:+85051648 | Msa0962160:CDS |
| TTGGATTCCTTGAAGGTTGC+TGG | 0.315532 | 6_3:-85050352 | None:intergenic |
| ACATCTTCCCTCAACTAAAA+TGG | 0.319301 | 6_3:+85050862 | Msa0962160:CDS |
| ACTGATACATTAATGATATA+TGG | 0.321580 | 6_3:-85050243 | None:intergenic |
| TCTTATGGGGTTTCTTTCAA+TGG | 0.331499 | 6_3:+85049910 | Msa0962160:CDS |
| GAAGTTTGATATTGTTTGTT+TGG | 0.332768 | 6_3:+85051486 | Msa0962160:CDS |
| CCTACATGGTTTGCAATTAG+TGG | 0.333118 | 6_3:+85050798 | Msa0962160:CDS |
| TGATATGTGGTGATGGAATA+TGG | 0.339780 | 6_3:+85051564 | Msa0962160:CDS |
| ACAAGGATTCAGTTCTTTAC+CGG | 0.358284 | 6_3:+85051304 | Msa0962160:CDS |
| TTTCAAGCCTTCCCTTCATT+AGG | 0.370895 | 6_3:+85049960 | Msa0962160:CDS |
| TTCAAGGAATCCAAGGTTAC+AGG | 0.378152 | 6_3:+85050361 | Msa0962160:CDS |
| GGTAAACTTGATTAAGGATT+CGG | 0.378893 | 6_3:+85051373 | Msa0962160:CDS |
| CTTTAAGAAAGAGTTGTTTC+CGG | 0.382437 | 6_3:-85050767 | None:intergenic |
| TTGTATGAACAGGAGGATTT+GGG | 0.383317 | 6_3:+85049021 | Msa0962160:intron |
| TGATAAGAACTTCATGCAAA+TGG | 0.385966 | 6_3:-85051630 | None:intergenic |
| TTGACTATACAAACCCAATA+AGG | 0.387419 | 6_3:-85050658 | None:intergenic |
| TTTGTACCAATGACCCTCTC+TGG | 0.398473 | 6_3:-85050316 | None:intergenic |
| CTTATGCAAGATTTCAAAAC+CGG | 0.403681 | 6_3:+85051095 | Msa0962160:CDS |
| AAGGATTCGGTTGGTAAGGT+AGG | 0.403845 | 6_3:+85051386 | Msa0962160:CDS |
| ATAATAATGAGCATGAAGAT+AGG | 0.408695 | 6_3:+85046422 | Msa0962160:CDS |
| CTCAGTTGTGCCTCTTAGAA+AGG | 0.409163 | 6_3:+85049166 | Msa0962160:CDS |
| CAAATAATCGGCACAACAAT+GGG | 0.413810 | 6_3:+85051158 | Msa0962160:CDS |
| CATGTTCACTCATACCAAAT+AGG | 0.417530 | 6_3:-85049049 | None:intergenic |
| CACATGTCAATGGCAAAATA+AGG | 0.417542 | 6_3:-85051458 | None:intergenic |
| TGTAACCTTGGATTCCTTGA+AGG | 0.418144 | 6_3:-85050359 | None:intergenic |
| AAGTTTGATATTGTTTGTTT+GGG | 0.419735 | 6_3:+85051487 | Msa0962160:CDS |
| GGTCTAAACCCTCCAATTCA+AGG | 0.419813 | 6_3:+85051973 | Msa0962160:three_prime_UTR |
| GTTGCTTCTGGTTTGATATG+TGG | 0.420440 | 6_3:+85051551 | Msa0962160:CDS |
| GGAAATTAATTAATTAGGCT+TGG | 0.421123 | 6_3:+85051686 | Msa0962160:exon |
| TGGATTCCTTGAAGGTTGCT+GGG | 0.435366 | 6_3:-85050351 | None:intergenic |
| TTTGCATGAAGTTCTTATCA+AGG | 0.435702 | 6_3:+85051633 | Msa0962160:CDS |
| TAGATCCTTAAGATTTGGTT+CGG | 0.435918 | 6_3:-85046387 | None:intergenic |
| CTTGAAGGTTGCTGGGACCA+AGG | 0.438296 | 6_3:-85050344 | None:intergenic |
| CAGGAAGCAAGTGAAATTGT+TGG | 0.441495 | 6_3:+85049866 | Msa0962160:intron |
| GATATTGTTTGTTTGGGAAA+AGG | 0.445126 | 6_3:+85051493 | Msa0962160:CDS |
| CATAGATTGTCACAACATAA+AGG | 0.446334 | 6_3:+85046502 | Msa0962160:CDS |
| TTCTCAATCGGAGCGTGGGC+TGG | 0.448663 | 6_3:+85050996 | Msa0962160:CDS |
| TGAAACTTACCCTGTAACCT+TGG | 0.450447 | 6_3:-85050371 | None:intergenic |
| TTCTCATTCCCTTGAATTGG+AGG | 0.451325 | 6_3:-85051982 | None:intergenic |
| TATACAGCTGCTGATGGGTG+TGG | 0.451437 | 6_3:+85049936 | Msa0962160:CDS |
| AGGAAGCAAGTGAAATTGTT+GGG | 0.453448 | 6_3:+85049867 | Msa0962160:intron |
| AAGTTTCATTTCATAATCCT+TGG | 0.456411 | 6_3:+85046359 | Msa0962160:five_prime_UTR |
| TAGAAACCAGAGAGGGTCAT+TGG | 0.461241 | 6_3:+85050310 | Msa0962160:CDS |
| ATGCTAAGGTTGGAGCAATC+AGG | 0.465083 | 6_3:-85050905 | None:intergenic |
| CCAAATAATCGGCACAACAA+TGG | 0.465301 | 6_3:+85051157 | Msa0962160:CDS |
| GCAATTATCCATCCCAACTT+AGG | 0.467065 | 6_3:-85049110 | None:intergenic |
| AGTATCCGAACCAAATCTTA+AGG | 0.471370 | 6_3:+85046382 | Msa0962160:five_prime_UTR |
| CCTTCACTTAATGTCTCTGC+TGG | 0.473944 | 6_3:+85046700 | Msa0962160:CDS |
| AGCACTTATTAGTACCATCA+TGG | 0.474614 | 6_3:+85046578 | Msa0962160:CDS |
| TTCTACACTTTATATTGGTG+TGG | 0.475325 | 6_3:+85050209 | Msa0962160:CDS |
| ATGTTTGTGAGCCAAATAAT+CGG | 0.476829 | 6_3:+85051146 | Msa0962160:CDS |
| GATAAGAACTTCATGCAAAT+GGG | 0.477886 | 6_3:-85051629 | None:intergenic |
| TGGTCTATACAACTTTGTTA+AGG | 0.481791 | 6_3:+85050623 | Msa0962160:CDS |
| GATTATTTGGCTCACAAACA+TGG | 0.485265 | 6_3:-85051144 | None:intergenic |
| CTTGGAGGAGTTCTTTCTTG+GGG | 0.488944 | 6_3:+85050270 | Msa0962160:CDS |
| CTTGGTCCCAGCAACCTTCA+AGG | 0.489296 | 6_3:+85050345 | Msa0962160:CDS |
| ATGAAACTTAATCTTACTAC+TGG | 0.492220 | 6_3:+85046670 | Msa0962160:CDS |
| CAAAGCATGAGGCAATTATC+CGG | 0.498117 | 6_3:-85051323 | None:intergenic |
| AATGTATCAGTTCTCCTTGG+AGG | 0.502394 | 6_3:+85050255 | Msa0962160:CDS |
| ATTAATGTATCAGTTCTCCT+TGG | 0.503428 | 6_3:+85050252 | Msa0962160:CDS |
| GATTAAGGATTCGGTTGGTA+AGG | 0.506556 | 6_3:+85051382 | Msa0962160:CDS |
| AAAGGTATTGCCATAGCCAT+TGG | 0.509985 | 6_3:-85051425 | None:intergenic |
| GGAGAGTCTTGATCCGCTAC+AGG | 0.511231 | 6_3:-85050711 | None:intergenic |
| TACACAATTGCATAGGGCGC+AGG | 0.511720 | 6_3:-85051257 | None:intergenic |
| CGAAGCCAGGGTAAGGTAGC+CGG | 0.512157 | 6_3:-85051114 | None:intergenic |
| ATAGCCATAGCCATGATCCT+TGG | 0.513227 | 6_3:+85050597 | Msa0962160:CDS |
| TCTACACTTTATATTGGTGT+GGG | 0.513632 | 6_3:+85050210 | Msa0962160:CDS |
| GTTTGGCTCCTTGAGGAGTG+TGG | 0.515407 | 6_3:-85049740 | None:intergenic |
| CATCTGCCCTTCGTTTGTCC+CGG | 0.515709 | 6_3:-85050683 | None:intergenic |
| TACCGCAACATGGCGATACT+CGG | 0.519758 | 6_3:+85051278 | Msa0962160:CDS |
| AAAAGAGCAAGTATTGAAGC+AGG | 0.521563 | 6_3:-85051593 | None:intergenic |
| TTCAGTTTCAGTTTCTTATG+GGG | 0.524007 | 6_3:+85049897 | Msa0962160:CDS |
| AAATAAGGTCCTAAATAGAA+AGG | 0.525642 | 6_3:-85051443 | None:intergenic |
| ATTCTTTGGCGCAGCGATTG+TGG | 0.525714 | 6_3:+85051352 | Msa0962160:CDS |
| ACTTCCAACACACATGTCAA+TGG | 0.526506 | 6_3:-85051468 | None:intergenic |
| TTCTTTCTTGGGGAGTAATG+TGG | 0.528506 | 6_3:+85050280 | Msa0962160:CDS |
| ATTGAAAATTTGGTGTTCAG+AGG | 0.528592 | 6_3:-85051937 | None:intergenic |
| TAGACCATCTCCAAGGATCA+TGG | 0.531309 | 6_3:-85050607 | None:intergenic |
| TGGGTTTGTATAGTCAACTC+CGG | 0.531616 | 6_3:+85050664 | Msa0962160:CDS |
| AACAGCAGGTGCAAAAGCAT+CGG | 0.537157 | 6_3:-85051531 | None:intergenic |
| ATCTCCAAGGATCATGGCTA+TGG | 0.539270 | 6_3:-85050601 | None:intergenic |
| TGGTTCTATACAGCTGCTGA+TGG | 0.540404 | 6_3:+85049930 | Msa0962160:CDS |
| CCCTCTCTGGTTTCTATGAG+AGG | 0.542261 | 6_3:-85050303 | None:intergenic |
| TTTGCTAGTTTGGCTCCTTG+AGG | 0.542951 | 6_3:-85049747 | None:intergenic |
| TATGCTTTGAGTCCTAATGA+AGG | 0.546514 | 6_3:-85049972 | None:intergenic |
| ATCGCGGCGAAGCCAGGGTA+AGG | 0.548502 | 6_3:-85051121 | None:intergenic |
| TGAGCAGTTGCAGTACCACT+TGG | 0.550234 | 6_3:-85049702 | None:intergenic |
| GTTGCGGTACACAATTGCAT+AGG | 0.551367 | 6_3:-85051264 | None:intergenic |
| TTAAGGATCCTAAGTTGGGA+TGG | 0.551545 | 6_3:+85049102 | Msa0962160:CDS |
| ATCAAGGTCTACAAATGATA+GGG | 0.551849 | 6_3:+85051649 | Msa0962160:CDS |
| AGGATTCGGTTGGTAAGGTA+GGG | 0.553397 | 6_3:+85051387 | Msa0962160:CDS |
| CAAAACCGGCTACCTTACCC+TGG | 0.553851 | 6_3:+85051109 | Msa0962160:CDS |
| TAATAATGAGCATGAAGATA+GGG | 0.554096 | 6_3:+85046423 | Msa0962160:CDS |
| CATGGATCGCGGCGAAGCCA+GGG | 0.554257 | 6_3:-85051126 | None:intergenic |
| TCTCATTCCCTTGAATTGGA+GGG | 0.555868 | 6_3:-85051981 | None:intergenic |
| GCGTGGGCTGGTGCATCACA+TGG | 0.556664 | 6_3:+85051008 | Msa0962160:CDS |
| TCTGGTTTGATATGTGGTGA+TGG | 0.557129 | 6_3:+85051557 | Msa0962160:CDS |
| AACAGCTTCCACACTCCTCA+AGG | 0.557684 | 6_3:+85049732 | Msa0962160:CDS |
| ATGGCGATACTCGGAGTACA+AGG | 0.557969 | 6_3:+85051287 | Msa0962160:CDS |
| TGGTCCCTAGCATCAACCTA+TGG | 0.558055 | 6_3:+85050960 | Msa0962160:CDS |
| GCATTGCAAAATGCTAAGGT+TGG | 0.558181 | 6_3:-85050915 | None:intergenic |
| CATGATTTGATTGTCATTTG+GGG | 0.561390 | 6_3:+85051883 | Msa0962160:three_prime_UTR |
| ATGGTTGTGGACTAACAGAT+TGG | 0.563504 | 6_3:+85050940 | Msa0962160:CDS |
| CCACTAATTGCAAACCATGT+AGG | 0.563777 | 6_3:-85050798 | None:intergenic |
| ATTGCCATAGCCATTGGAAG+TGG | 0.566809 | 6_3:-85051419 | None:intergenic |
| GGGTTTGTATAGTCAACTCC+GGG | 0.567231 | 6_3:+85050665 | Msa0962160:CDS |
| CATACCACTTCCAATGGCTA+TGG | 0.569131 | 6_3:+85051415 | Msa0962160:CDS |
| GTTAACTGATTCCTCCATGA+TGG | 0.571809 | 6_3:-85046592 | None:intergenic |
| TTTGCCATTGACATGTGTGT+TGG | 0.573547 | 6_3:+85051464 | Msa0962160:CDS |
| GTCTAAACCCTCCAATTCAA+GGG | 0.574433 | 6_3:+85051974 | Msa0962160:three_prime_UTR |
| ATCTGTTAGTCCACAACCAT+AGG | 0.575557 | 6_3:-85050937 | None:intergenic |
| GTCAACTCCGGGACAAACGA+AGG | 0.575818 | 6_3:+85050676 | Msa0962160:CDS |
| TTAAAGATCAGATTCCTACA+TGG | 0.584073 | 6_3:+85050784 | Msa0962160:CDS |
| ATAGGCATTGCAAAATGCTA+AGG | 0.584698 | 6_3:-85050919 | None:intergenic |
| GGTTCTATACAGCTGCTGAT+GGG | 0.586315 | 6_3:+85049931 | Msa0962160:CDS |
| GATTTGGTTCGGATACTCCA+AGG | 0.587238 | 6_3:-85046376 | None:intergenic |
| AGCAACCTTCAAGGAATCCA+AGG | 0.591596 | 6_3:+85050354 | Msa0962160:CDS |
| GATGTTCATCATGACTCCGC+AGG | 0.591634 | 6_3:-85051054 | None:intergenic |
| TTTGAGTCCTAATGAAGGGA+AGG | 0.592188 | 6_3:-85049967 | None:intergenic |
| TCAAGGAATCCAAGGTTACA+GGG | 0.594343 | 6_3:+85050362 | Msa0962160:CDS |
| CTTGCTAGTCTTGCAGCCTG+CGG | 0.595048 | 6_3:+85051038 | Msa0962160:CDS |
| GGAAAAGGTTGACAAGGCAA+AGG | 0.596637 | 6_3:+85051508 | Msa0962160:CDS |
| TGCAATTGTGTACCGCAACA+TGG | 0.597605 | 6_3:+85051268 | Msa0962160:CDS |
| AACTTGATTAAGGATTCGGT+TGG | 0.598409 | 6_3:+85051377 | Msa0962160:CDS |
| CTCCGAGTATCGCCATGTTG+CGG | 0.598881 | 6_3:-85051280 | None:intergenic |
| ATTCGGTTGGTAAGGTAGGG+AGG | 0.598930 | 6_3:+85051390 | Msa0962160:CDS |
| TTGCGGTACACAATTGCATA+GGG | 0.599911 | 6_3:-85051263 | None:intergenic |
| TGTTTGGGAAAAGGTTGACA+AGG | 0.599936 | 6_3:+85051502 | Msa0962160:CDS |
| GTAAGATAACTCAGGACTCG+AGG | 0.605381 | 6_3:-85050733 | None:intergenic |
| GAGGTTCATACCACTTCCAA+TGG | 0.605541 | 6_3:+85051409 | Msa0962160:CDS |
| ATGCTTTGAGTCCTAATGAA+GGG | 0.608080 | 6_3:-85049971 | None:intergenic |
| AGAATATATAACAAAGCATG+AGG | 0.611959 | 6_3:-85051334 | None:intergenic |
| TACAAAGCATTTCCTGACCT+AGG | 0.612341 | 6_3:+85051215 | Msa0962160:CDS |
| ATCAAACCAGAAGCAACAGC+AGG | 0.613290 | 6_3:-85051545 | None:intergenic |
| AACATAAAGGTAGTAGTACA+AGG | 0.613392 | 6_3:+85046515 | Msa0962160:CDS |
| GGCAGATGCTCTACCTGTAG+CGG | 0.616595 | 6_3:+85050698 | Msa0962160:CDS |
| CCCAAGAAAGAACTCCTCCA+AGG | 0.622090 | 6_3:-85050269 | None:intergenic |
| ATAGCCATGATCCTTGGAGA+TGG | 0.623397 | 6_3:+85050603 | Msa0962160:CDS |
| GAAGATAGGGTAGTTGACAA+TGG | 0.624032 | 6_3:+85046436 | Msa0962160:CDS |
| TGATCATCGTAAGATAACTC+AGG | 0.626341 | 6_3:-85050741 | None:intergenic |
| ACACAATTGCATAGGGCGCA+GGG | 0.626742 | 6_3:-85051256 | None:intergenic |
| TAAGATAACTCAGGACTCGA+GGG | 0.628178 | 6_3:-85050732 | None:intergenic |
| TTTAGTTGAGGGAAGATGTG+CGG | 0.628491 | 6_3:-85050858 | None:intergenic |
| TATCTTACGATGATCAGCGC+CGG | 0.641527 | 6_3:+85050748 | Msa0962160:CDS |
| TCAACTCCGGGACAAACGAA+GGG | 0.644762 | 6_3:+85050677 | Msa0962160:CDS |
| CCAGCAGAGACATTAAGTGA+AGG | 0.650274 | 6_3:-85046700 | None:intergenic |
| TTCAAATTAACATATCCAAG+TGG | 0.661554 | 6_3:+85049687 | Msa0962160:CDS |
| AGGGAAGATGTGCGGCAATG+TGG | 0.666147 | 6_3:-85050850 | None:intergenic |
| AAGAACTTCATGCAAATGGG+AGG | 0.669146 | 6_3:-85051626 | None:intergenic |
| ATCTTAAGGATCTAAAGACA+TGG | 0.673015 | 6_3:+85046396 | Msa0962160:exon |
| AGTTGTATAGACCATCTCCA+AGG | 0.673257 | 6_3:-85050614 | None:intergenic |
| TAGAAAATCCAAAAGACACA+AGG | 0.677007 | 6_3:-85051194 | None:intergenic |
| TGGGCTGGTGCATCACATGG+TGG | 0.687327 | 6_3:+85051011 | Msa0962160:CDS |
| TGGCTCACAAACATGGATCG+CGG | 0.706606 | 6_3:-85051137 | None:intergenic |
| GCCTCTCATAGAAACCAGAG+AGG | 0.722428 | 6_3:+85050302 | Msa0962160:CDS |
| CCTCTCATAGAAACCAGAGA+GGG | 0.726173 | 6_3:+85050303 | Msa0962160:CDS |
| ACTTATTAGTACCATCATGG+AGG | 0.730761 | 6_3:+85046581 | Msa0962160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GACATTTTTTTTTAAAAAAT+GGG | - | chr6_3:85046135-85046154 | None:intergenic | 10.0% |
| !! | AAAATTAATTTCATCAAATT+AGG | - | chr6_3:85048992-85049011 | None:intergenic | 10.0% |
| !! | ATCTAAATTTATTTATTTGT+AGG | + | chr6_3:85050172-85050191 | Msa0962160:intron | 10.0% |
| !!! | GGACATTTTTTTTTAAAAAA+TGG | - | chr6_3:85046136-85046155 | None:intergenic | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr6_3:85046204-85046223 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr6_3:85046205-85046224 | None:intergenic | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | - | chr6_3:85046269-85046288 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | - | chr6_3:85046270-85046289 | None:intergenic | 15.0% |
| !! | ATAATCAAATCATAGTAATA+AGG | - | chr6_3:85047009-85047028 | None:intergenic | 15.0% |
| !!! | TTAATTTTTCTGAATATGAT+AGG | + | chr6_3:85047915-85047934 | Msa0962160:intron | 15.0% |
| !! | TTAATATATATTGCTATGTA+GGG | - | chr6_3:85048345-85048364 | None:intergenic | 15.0% |
| !! | ATTAATATATATTGCTATGT+AGG | - | chr6_3:85048346-85048365 | None:intergenic | 15.0% |
| !! | ATAGCAATATATATTAATGA+GGG | + | chr6_3:85048348-85048367 | Msa0962160:intron | 15.0% |
| !! | ATCATGGTTATTAAAAATAT+AGG | + | chr6_3:85048854-85048873 | Msa0962160:intron | 15.0% |
| !! | TTATCTACATACATTAATAT+AGG | - | chr6_3:85049656-85049675 | None:intergenic | 15.0% |
| !! | ATATTAATGTATGTAGATAA+TGG | + | chr6_3:85049656-85049675 | Msa0962160:intron | 15.0% |
| !! | AATCTATACTTATATAGAAA+TGG | + | chr6_3:85050067-85050086 | Msa0962160:intron | 15.0% |
| !!! | TAATTAATCGTACTTTTTTA+AGG | + | chr6_3:85050524-85050543 | Msa0962160:intron | 15.0% |
| !! | TCTTAGGAAATTAATTAATT+AGG | + | chr6_3:85051681-85051700 | Msa0962160:exon | 15.0% |
| !!! | ATTTGAAATAAAGATGTTTT+AGG | - | chr6_3:85051911-85051930 | None:intergenic | 15.0% |
| !!! | TGAAATATGTCAGTTATTTT+GGG | - | chr6_3:85046157-85046176 | None:intergenic | 20.0% |
| !!! | TTGAAATATGTCAGTTATTT+TGG | - | chr6_3:85046158-85046177 | None:intergenic | 20.0% |
| !!! | AGAAAAGTGTATAAATAAAG+GGG | - | chr6_3:85046268-85046287 | None:intergenic | 20.0% |
| !! | CTAATTCTTCAAAGAAAATA+AGG | + | chr6_3:85047466-85047485 | Msa0962160:intron | 20.0% |
| !! | ATCTTATGAAAACAGTTAAT+AGG | + | chr6_3:85047536-85047555 | Msa0962160:intron | 20.0% |
| !!! | AAACTGTATTTTTCAAAGTA+TGG | - | chr6_3:85047811-85047830 | None:intergenic | 20.0% |
| !!! | AGTTTTTTCTATATTTTCCA+TGG | + | chr6_3:85047826-85047845 | Msa0962160:intron | 20.0% |
| !!! | ACATAAATTTTCAAAGTTCT+TGG | - | chr6_3:85047863-85047882 | None:intergenic | 20.0% |
| !!! | AAGAACTTTGAAAATTTATG+TGG | + | chr6_3:85047862-85047881 | Msa0962160:intron | 20.0% |
| !! | AAATTAAATTCTGTCCAAAT+TGG | - | chr6_3:85047902-85047921 | None:intergenic | 20.0% |
| !!! | AAGTCAAATTATACTACTTT+TGG | + | chr6_3:85047955-85047974 | Msa0962160:intron | 20.0% |
| !! | CATAGCAATATATATTAATG+AGG | + | chr6_3:85048347-85048366 | Msa0962160:intron | 20.0% |
| !! | TTTGACAGAAAAAAAAATCT+TGG | + | chr6_3:85048494-85048513 | Msa0962160:intron | 20.0% |
| !! | TACAAACTACAAAACATATA+GGG | - | chr6_3:85048645-85048664 | None:intergenic | 20.0% |
| !!! | TACAAAGTATTGTCAAATAA+CGG | + | chr6_3:85048666-85048685 | Msa0962160:intron | 20.0% |
| !! | AAGTAATTCAATATAGGATT+TGG | - | chr6_3:85049526-85049545 | None:intergenic | 20.0% |
| !! | ATTTAATCAAGGTTATTGAT+AGG | - | chr6_3:85049629-85049648 | None:intergenic | 20.0% |
| !! | TGAATAAGTTTGATTGAAAA+TGG | - | chr6_3:85050023-85050042 | None:intergenic | 20.0% |
| !! | TATTTGTCTCATTCTAATTT+GGG | + | chr6_3:85050143-85050162 | Msa0962160:intron | 20.0% |
| !!! | GATTTTTCTACACTTTATAT+TGG | + | chr6_3:85050204-85050223 | Msa0962160:CDS | 20.0% |
| !! | ACTGATACATTAATGATATA+TGG | - | chr6_3:85050246-85050265 | None:intergenic | 20.0% |
| !!! | ATGCTTTGTTATATATTCTT+TGG | + | chr6_3:85051338-85051357 | Msa0962160:CDS | 20.0% |
| !! | AAGTTTGATATTGTTTGTTT+GGG | + | chr6_3:85051487-85051506 | Msa0962160:CDS | 20.0% |
| !!! | AGAAAAAGTATTGTTTTTGT+TGG | + | chr6_3:85051820-85051839 | Msa0962160:three_prime_UTR | 20.0% |
| !! | AACAAAGTACATTGAAAATT+TGG | - | chr6_3:85051950-85051969 | None:intergenic | 20.0% |
| !!! | TTTTCAATGTACTTTGTTTT+AGG | + | chr6_3:85051952-85051971 | Msa0962160:three_prime_UTR | 20.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr6_3:85046246-85046265 | None:intergenic | 25.0% |
| ! | AAGTTTCATTTCATAATCCT+TGG | + | chr6_3:85046359-85046378 | Msa0962160:five_prime_UTR | 25.0% |
| ! | ATAATAATGAGCATGAAGAT+AGG | + | chr6_3:85046422-85046441 | Msa0962160:CDS | 25.0% |
| ! | TAATAATGAGCATGAAGATA+GGG | + | chr6_3:85046423-85046442 | Msa0962160:CDS | 25.0% |
| ! | ATGAAACTTAATCTTACTAC+TGG | + | chr6_3:85046670-85046689 | Msa0962160:CDS | 25.0% |
| !! | GATTTTTCTTTGTCAAAACT+TGG | + | chr6_3:85046731-85046750 | Msa0962160:CDS | 25.0% |
| ! | ATCACTTGAATTTAATCACT+TGG | + | chr6_3:85047250-85047269 | Msa0962160:intron | 25.0% |
| !! | AATTTGATAGTATGCTTGTT+AGG | + | chr6_3:85047318-85047337 | Msa0962160:intron | 25.0% |
| ! | TGTTAGGTTTGAAAATGATA+AGG | + | chr6_3:85047334-85047353 | Msa0962160:intron | 25.0% |
| !! | TAAGGAATAGTCAAGATTTT+CGG | + | chr6_3:85047352-85047371 | Msa0962160:intron | 25.0% |
| !!! | CTACAGTATCCTAATTTTTT+TGG | + | chr6_3:85047391-85047410 | Msa0962160:intron | 25.0% |
| !!! | TCCTAATTTTTTTGGAGATA+AGG | + | chr6_3:85047399-85047418 | Msa0962160:intron | 25.0% |
| ! | TCCTTATCTCCAAAAAAATT+AGG | - | chr6_3:85047403-85047422 | None:intergenic | 25.0% |
| ! | AAAGAAAATAAGGACATGTT+TGG | + | chr6_3:85047476-85047495 | Msa0962160:intron | 25.0% |
| ! | GTATTTACACTATAAGAACT+TGG | + | chr6_3:85047621-85047640 | Msa0962160:intron | 25.0% |
| ! | CTGTATTTATTAGTCCAATT+TGG | + | chr6_3:85047885-85047904 | Msa0962160:intron | 25.0% |
| ! | AATCAAACTAAAACCTAAAG+AGG | - | chr6_3:85048094-85048113 | None:intergenic | 25.0% |
| ! | TCTTATCACTTATATGTTTG+TGG | - | chr6_3:85048273-85048292 | None:intergenic | 25.0% |
| ! | GTATTACAAACTGTTTAATC+TGG | + | chr6_3:85048523-85048542 | Msa0962160:intron | 25.0% |
| ! | GTACAAACTACAAAACATAT+AGG | - | chr6_3:85048646-85048665 | None:intergenic | 25.0% |
| ! | ATTATTTGTGAGTACGTATA+GGG | - | chr6_3:85048753-85048772 | None:intergenic | 25.0% |
| !! | ATGTTTTATACCTTTCTAAG+AGG | - | chr6_3:85049179-85049198 | None:intergenic | 25.0% |
| ! | TGAAATATTGATACTGCATT+AGG | + | chr6_3:85049202-85049221 | Msa0962160:intron | 25.0% |
| ! | GAAATATTGATACTGCATTA+GGG | + | chr6_3:85049203-85049222 | Msa0962160:intron | 25.0% |
| ! | AAGTGCAAGTAATTCAATAT+AGG | - | chr6_3:85049532-85049551 | None:intergenic | 25.0% |
| !!! | GCACTTTTTCAAATTATTAC+TGG | + | chr6_3:85049546-85049565 | Msa0962160:intron | 25.0% |
| ! | ATATAGGCAACATTTAATCA+AGG | - | chr6_3:85049640-85049659 | None:intergenic | 25.0% |
| ! | TTCAAATTAACATATCCAAG+TGG | + | chr6_3:85049687-85049706 | Msa0962160:CDS | 25.0% |
| ! | AGACAAATAGTTTAAACGAA+GGG | - | chr6_3:85050132-85050151 | None:intergenic | 25.0% |
| ! | CTATTTGTCTCATTCTAATT+TGG | + | chr6_3:85050142-85050161 | Msa0962160:intron | 25.0% |
| ! | ATTTGTCTCATTCTAATTTG+GGG | + | chr6_3:85050144-85050163 | Msa0962160:intron | 25.0% |
| !!! | TGTAATACCATTTTAGTTGA+GGG | - | chr6_3:85050872-85050891 | None:intergenic | 25.0% |
| !!! | ATGTAATACCATTTTAGTTG+AGG | - | chr6_3:85050873-85050892 | None:intergenic | 25.0% |
| ! | AGAATATATAACAAAGCATG+AGG | - | chr6_3:85051337-85051356 | None:intergenic | 25.0% |
| ! | AAATAAGGTCCTAAATAGAA+AGG | - | chr6_3:85051446-85051465 | None:intergenic | 25.0% |
| ! | GAAGTTTGATATTGTTTGTT+TGG | + | chr6_3:85051486-85051505 | Msa0962160:CDS | 25.0% |
| ! | GGAAATTAATTAATTAGGCT+TGG | + | chr6_3:85051686-85051705 | Msa0962160:exon | 25.0% |
| AAAAAATGGGTCAGTTATTC+CGG | - | chr6_3:85046122-85046141 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr6_3:85046261-85046280 | None:intergenic | 30.0% | |
| CCAAAGTAGGTCAATTATAT+CGG | + | chr6_3:85046304-85046323 | Msa0962160:intron | 30.0% | |
| CAAAGTAGGTCAATTATATC+GGG | + | chr6_3:85046305-85046324 | Msa0962160:intron | 30.0% | |
| ! | TAGATCCTTAAGATTTGGTT+CGG | - | chr6_3:85046390-85046409 | None:intergenic | 30.0% |
| GTCTTTAGATCCTTAAGATT+TGG | - | chr6_3:85046395-85046414 | None:intergenic | 30.0% | |
| ATCTTAAGGATCTAAAGACA+TGG | + | chr6_3:85046396-85046415 | Msa0962160:exon | 30.0% | |
| CATAGATTGTCACAACATAA+AGG | + | chr6_3:85046502-85046521 | Msa0962160:CDS | 30.0% | |
| AACATAAAGGTAGTAGTACA+AGG | + | chr6_3:85046515-85046534 | Msa0962160:CDS | 30.0% | |
| ! | CAAAACTTGGACTAAGTTTT+TGG | + | chr6_3:85046744-85046763 | Msa0962160:CDS | 30.0% |
| GTATTCTCTTGTCTAGTAAA+AGG | - | chr6_3:85046793-85046812 | None:intergenic | 30.0% | |
| TCATGTTGAAATTTGATGTG+TGG | + | chr6_3:85046943-85046962 | Msa0962160:intron | 30.0% | |
| !! | AATCAATGATTGTTTCTGTC+AGG | + | chr6_3:85047177-85047196 | Msa0962160:intron | 30.0% |
| !! | GATTTTCGGCAGTTTTTTTT+AGG | + | chr6_3:85047366-85047385 | Msa0962160:intron | 30.0% |
| AGATAAGGAATTGAGATAAG+AGG | + | chr6_3:85047414-85047433 | Msa0962160:intron | 30.0% | |
| GATAAGGAATTGAGATAAGA+GGG | + | chr6_3:85047415-85047434 | Msa0962160:intron | 30.0% | |
| ATAAGGAATTGAGATAAGAG+GGG | + | chr6_3:85047416-85047435 | Msa0962160:intron | 30.0% | |
| AAATAAGGACATGTTTGGAT+TGG | + | chr6_3:85047481-85047500 | Msa0962160:intron | 30.0% | |
| TAGTCAAATATGTACTACAG+TGG | + | chr6_3:85047666-85047685 | Msa0962160:intron | 30.0% | |
| ATATGTACTACAGTGGTTAA+TGG | + | chr6_3:85047673-85047692 | Msa0962160:intron | 30.0% | |
| ! | GTTTTCAATATTTCACTGTC+TGG | + | chr6_3:85047726-85047745 | Msa0962160:intron | 30.0% |
| ! | ATGTATGATGTAACCCATTT+TGG | + | chr6_3:85048025-85048044 | Msa0962160:intron | 30.0% |
| TAGAGAAGAAAAAATCGTTG+TGG | - | chr6_3:85048234-85048253 | None:intergenic | 30.0% | |
| ! | TTTTTCTTCTCTACGTATCT+CGG | + | chr6_3:85048241-85048260 | Msa0962160:intron | 30.0% |
| !! | GAATTTATTTTCAGTGGAAG+TGG | - | chr6_3:85048466-85048485 | None:intergenic | 30.0% |
| TCCACTGAAAATAAATTCTG+TGG | + | chr6_3:85048468-85048487 | Msa0962160:intron | 30.0% | |
| !! | TCCACAGAATTTATTTTCAG+TGG | - | chr6_3:85048472-85048491 | None:intergenic | 30.0% |
| CATTATTTGTGAGTACGTAT+AGG | - | chr6_3:85048754-85048773 | None:intergenic | 30.0% | |
| CTATACGTACTCACAAATAA+TGG | + | chr6_3:85048752-85048771 | Msa0962160:intron | 30.0% | |
| ATGATCAATGTTGTCAATTG+CGG | - | chr6_3:85048839-85048858 | None:intergenic | 30.0% | |
| TTTGATGTTATGCATGTGAA+AGG | + | chr6_3:85048910-85048929 | Msa0962160:intron | 30.0% | |
| !! | CTTAAAATCACTTTTGTCTG+AGG | - | chr6_3:85049087-85049106 | None:intergenic | 30.0% |
| ! | CTCAGACAAAAGTGATTTTA+AGG | + | chr6_3:85049085-85049104 | Msa0962160:CDS | 30.0% |
| !! | TGATTTTAAGGATCCTAAGT+TGG | + | chr6_3:85049097-85049116 | Msa0962160:CDS | 30.0% |
| !! | GATTTTAAGGATCCTAAGTT+GGG | + | chr6_3:85049098-85049117 | Msa0962160:CDS | 30.0% |
| !!! | TCTCTTTGTTGTTAGCTTTT+TGG | + | chr6_3:85049136-85049155 | Msa0962160:CDS | 30.0% |
| !!! | CTCTTTGTTGTTAGCTTTTT+GGG | + | chr6_3:85049137-85049156 | Msa0962160:CDS | 30.0% |
| ATCCAAATCCATATAATCAC+AGG | - | chr6_3:85049285-85049304 | None:intergenic | 30.0% | |
| ACTGTTGTGTTAAAATGTGT+GGG | - | chr6_3:85049325-85049344 | None:intergenic | 30.0% | |
| TCAAAATCTGCATTGAATTC+TGG | - | chr6_3:85049392-85049411 | None:intergenic | 30.0% | |
| AAGATTGAGTTATTGTACAG+TGG | - | chr6_3:85049777-85049796 | None:intergenic | 30.0% | |
| !! | TTTTCCTTTTCTACTTTTCC+AGG | + | chr6_3:85049847-85049866 | Msa0962160:intron | 30.0% |
| TCTTCAGTTTCAGTTTCTTA+TGG | + | chr6_3:85049895-85049914 | Msa0962160:CDS | 30.0% | |
| CTTCAGTTTCAGTTTCTTAT+GGG | + | chr6_3:85049896-85049915 | Msa0962160:CDS | 30.0% | |
| TTCAGTTTCAGTTTCTTATG+GGG | + | chr6_3:85049897-85049916 | Msa0962160:CDS | 30.0% | |
| GAGACAAATAGTTTAAACGA+AGG | - | chr6_3:85050133-85050152 | None:intergenic | 30.0% | |
| TTCTACACTTTATATTGGTG+TGG | + | chr6_3:85050209-85050228 | Msa0962160:CDS | 30.0% | |
| TCTACACTTTATATTGGTGT+GGG | + | chr6_3:85050210-85050229 | Msa0962160:CDS | 30.0% | |
| ATTAATGTATCAGTTCTCCT+TGG | + | chr6_3:85050252-85050271 | Msa0962160:CDS | 30.0% | |
| GATTAATTACATTCAGTGGA+TGG | - | chr6_3:85050513-85050532 | None:intergenic | 30.0% | |
| GTACGATTAATTACATTCAG+TGG | - | chr6_3:85050517-85050536 | None:intergenic | 30.0% | |
| GTAAGGTGAAGCAAATTAAA+GGG | - | chr6_3:85050554-85050573 | None:intergenic | 30.0% | |
| TGTAAGGTGAAGCAAATTAA+AGG | - | chr6_3:85050555-85050574 | None:intergenic | 30.0% | |
| TGGTCTATACAACTTTGTTA+AGG | + | chr6_3:85050623-85050642 | Msa0962160:CDS | 30.0% | |
| TTGACTATACAAACCCAATA+AGG | - | chr6_3:85050661-85050680 | None:intergenic | 30.0% | |
| ! | CTTTAAGAAAGAGTTGTTTC+CGG | - | chr6_3:85050770-85050789 | None:intergenic | 30.0% |
| TTAAAGATCAGATTCCTACA+TGG | + | chr6_3:85050784-85050803 | Msa0962160:CDS | 30.0% | |
| !! | AAACTAGCCATTTTCTCAAT+CGG | + | chr6_3:85050984-85051003 | Msa0962160:CDS | 30.0% |
| CTTATGCAAGATTTCAAAAC+CGG | + | chr6_3:85051095-85051114 | Msa0962160:CDS | 30.0% | |
| ATGTTTGTGAGCCAAATAAT+CGG | + | chr6_3:85051146-85051165 | Msa0962160:CDS | 30.0% | |
| ! | TAATTTCACCTTGTGTCTTT+TGG | + | chr6_3:85051186-85051205 | Msa0962160:CDS | 30.0% |
| TAGAAAATCCAAAAGACACA+AGG | - | chr6_3:85051197-85051216 | None:intergenic | 30.0% | |
| !! | ATTGACTTTTATGTGTTCCT+AGG | - | chr6_3:85051235-85051254 | None:intergenic | 30.0% |
| GATTGTGGTAAACTTGATTA+AGG | + | chr6_3:85051367-85051386 | Msa0962160:CDS | 30.0% | |
| GGTAAACTTGATTAAGGATT+CGG | + | chr6_3:85051373-85051392 | Msa0962160:CDS | 30.0% | |
| ATGGCAATACCTTTCTATTT+AGG | + | chr6_3:85051434-85051453 | Msa0962160:CDS | 30.0% | |
| GATATTGTTTGTTTGGGAAA+AGG | + | chr6_3:85051493-85051512 | Msa0962160:CDS | 30.0% | |
| GATAAGAACTTCATGCAAAT+GGG | - | chr6_3:85051632-85051651 | None:intergenic | 30.0% | |
| TGATAAGAACTTCATGCAAA+TGG | - | chr6_3:85051633-85051652 | None:intergenic | 30.0% | |
| TTTGCATGAAGTTCTTATCA+AGG | + | chr6_3:85051633-85051652 | Msa0962160:CDS | 30.0% | |
| TATCAAGGTCTACAAATGAT+AGG | + | chr6_3:85051648-85051667 | Msa0962160:CDS | 30.0% | |
| ATCAAGGTCTACAAATGATA+GGG | + | chr6_3:85051649-85051668 | Msa0962160:CDS | 30.0% | |
| TGCATGATTTGATTGTCATT+TGG | + | chr6_3:85051881-85051900 | Msa0962160:three_prime_UTR | 30.0% | |
| ! | GCATGATTTGATTGTCATTT+GGG | + | chr6_3:85051882-85051901 | Msa0962160:three_prime_UTR | 30.0% |
| ! | CATGATTTGATTGTCATTTG+GGG | + | chr6_3:85051883-85051902 | Msa0962160:three_prime_UTR | 30.0% |
| !! | ATTGAAAATTTGGTGTTCAG+AGG | - | chr6_3:85051940-85051959 | None:intergenic | 30.0% |
| AAAAATGGGTCAGTTATTCC+GGG | - | chr6_3:85046121-85046140 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | + | chr6_3:85046291-85046310 | Msa0962160:intron | 35.0% | |
| CCGATATAATTGACCTACTT+TGG | - | chr6_3:85046307-85046326 | None:intergenic | 35.0% | |
| AGTATCCGAACCAAATCTTA+AGG | + | chr6_3:85046382-85046401 | Msa0962160:five_prime_UTR | 35.0% | |
| AGCACTTATTAGTACCATCA+TGG | + | chr6_3:85046578-85046597 | Msa0962160:CDS | 35.0% | |
| ACTTATTAGTACCATCATGG+AGG | + | chr6_3:85046581-85046600 | Msa0962160:CDS | 35.0% | |
| !!! | TCTTCTGGAATTGCTTTTAG+TGG | + | chr6_3:85046838-85046857 | Msa0962160:CDS | 35.0% |
| ! | TTCTTGATCCTCCTGTTTTA+TGG | + | chr6_3:85047110-85047129 | Msa0962160:intron | 35.0% |
| ! | TCTTGATCCTCCTGTTTTAT+GGG | + | chr6_3:85047111-85047130 | Msa0962160:intron | 35.0% |
| TTTCTGTCAGGATTAGAACT+CGG | + | chr6_3:85047189-85047208 | Msa0962160:intron | 35.0% | |
| GTAGTACATATTTGACTAGC+TGG | - | chr6_3:85047664-85047683 | None:intergenic | 35.0% | |
| !! | TTTTTCCTGTTGCTATTCCA+AGG | - | chr6_3:85047762-85047781 | None:intergenic | 35.0% |
| CTGAATATGATAGGAGTAGA+AGG | + | chr6_3:85047924-85047943 | Msa0962160:intron | 35.0% | |
| ACCACTAGATCAACCAAAAT+GGG | - | chr6_3:85048041-85048060 | None:intergenic | 35.0% | |
| !!! | GGTTTTAGTTTGATTCTCTC+TGG | + | chr6_3:85048099-85048118 | Msa0962160:intron | 35.0% |
| TCAAATTAGTCCACCGAAAT+TGG | - | chr6_3:85048127-85048146 | None:intergenic | 35.0% | |
| AGAAGAAAAAATCGTTGTGG+CGG | - | chr6_3:85048231-85048250 | None:intergenic | 35.0% | |
| GTGGAAAAAATTCGCTCATA+AGG | - | chr6_3:85048447-85048466 | None:intergenic | 35.0% | |
| ! | CTATTTGACAATGCTGACTA+TGG | - | chr6_3:85048562-85048581 | None:intergenic | 35.0% |
| TAGTCAGCATTGTCAAATAG+CGG | + | chr6_3:85048562-85048581 | Msa0962160:intron | 35.0% | |
| ATTGTCAAATAGCGGCTATA+GGG | + | chr6_3:85048570-85048589 | Msa0962160:intron | 35.0% | |
| CTCACAAATAATGGCTATAG+TGG | + | chr6_3:85048761-85048780 | Msa0962160:intron | 35.0% | |
| GCAATTGACAACATTGATCA+TGG | + | chr6_3:85048838-85048857 | Msa0962160:intron | 35.0% | |
| TGTGATTCACTTGTATGAAC+AGG | + | chr6_3:85049011-85049030 | Msa0962160:intron | 35.0% | |
| TTGTATGAACAGGAGGATTT+GGG | + | chr6_3:85049021-85049040 | Msa0962160:intron | 35.0% | |
| CATGTTCACTCATACCAAAT+AGG | - | chr6_3:85049052-85049071 | None:intergenic | 35.0% | |
| ! | ACTTTTGTCTGAGGATTGAT+TGG | - | chr6_3:85049078-85049097 | None:intergenic | 35.0% |
| ! | ACGTGTTCAATCTGAAATGT+CGG | - | chr6_3:85049229-85049248 | None:intergenic | 35.0% |
| TCATGACACCTGTGATTATA+TGG | + | chr6_3:85049274-85049293 | Msa0962160:intron | 35.0% | |
| CACCTGTGATTATATGGATT+TGG | + | chr6_3:85049280-85049299 | Msa0962160:intron | 35.0% | |
| ATATGGATTTGGATTGCATG+CGG | + | chr6_3:85049291-85049310 | Msa0962160:intron | 35.0% | |
| CACTGTTGTGTTAAAATGTG+TGG | - | chr6_3:85049326-85049345 | None:intergenic | 35.0% | |
| TTTAACACAACAGTGACCAT+TGG | + | chr6_3:85049331-85049350 | Msa0962160:intron | 35.0% | |
| GATGGTATCAATTTCAAGCT+TGG | - | chr6_3:85049436-85049455 | None:intergenic | 35.0% | |
| !! | ACCATCCGATATTGATTCAA+CGG | + | chr6_3:85049450-85049469 | Msa0962160:intron | 35.0% |
| CATTCACGTAGTTAGTACTT+TGG | - | chr6_3:85049479-85049498 | None:intergenic | 35.0% | |
| GATTGTCTGCAATAAACGAT+CGG | - | chr6_3:85049504-85049523 | None:intergenic | 35.0% | |
| AGGAAGCAAGTGAAATTGTT+GGG | + | chr6_3:85049867-85049886 | Msa0962160:intron | 35.0% | |
| TCTTATGGGGTTTCTTTCAA+TGG | + | chr6_3:85049910-85049929 | Msa0962160:CDS | 35.0% | |
| ! | ATGCTTTGAGTCCTAATGAA+GGG | - | chr6_3:85049974-85049993 | None:intergenic | 35.0% |
| ! | TATGCTTTGAGTCCTAATGA+AGG | - | chr6_3:85049975-85049994 | None:intergenic | 35.0% |
| TGTGTTCAAATATGCAGTAG+AGG | - | chr6_3:85050416-85050435 | None:intergenic | 35.0% | |
| AAATCGTGCTTGACTGTATT+CGG | + | chr6_3:85050439-85050458 | Msa0962160:intron | 35.0% | |
| TAAATACCTGCAGAACTCAA+TGG | - | chr6_3:85050578-85050597 | None:intergenic | 35.0% | |
| GTGCTAACTCATACCTTATT+GGG | + | chr6_3:85050645-85050664 | Msa0962160:CDS | 35.0% | |
| TGATCATCGTAAGATAACTC+AGG | - | chr6_3:85050744-85050763 | None:intergenic | 35.0% | |
| ACATCTTCCCTCAACTAAAA+TGG | + | chr6_3:85050862-85050881 | Msa0962160:CDS | 35.0% | |
| ! | ATAGGCATTGCAAAATGCTA+AGG | - | chr6_3:85050922-85050941 | None:intergenic | 35.0% |
| ! | TTAGCATTTTGCAATGCCTA+TGG | + | chr6_3:85050921-85050940 | Msa0962160:CDS | 35.0% |
| !!! | TTTTCCATAGGTTGATGCTA+GGG | - | chr6_3:85050967-85050986 | None:intergenic | 35.0% |
| !!! | GAAAATGGCTAGTTTTCCAT+AGG | - | chr6_3:85050979-85050998 | None:intergenic | 35.0% |
| ! | GATTATTTGGCTCACAAACA+TGG | - | chr6_3:85051147-85051166 | None:intergenic | 35.0% |
| CAAATAATCGGCACAACAAT+GGG | + | chr6_3:85051158-85051177 | Msa0962160:CDS | 35.0% | |
| ACAAGGATTCAGTTCTTTAC+CGG | + | chr6_3:85051304-85051323 | Msa0962160:CDS | 35.0% | |
| ! | AACTTGATTAAGGATTCGGT+TGG | + | chr6_3:85051377-85051396 | Msa0962160:CDS | 35.0% |
| CACATGTCAATGGCAAAATA+AGG | - | chr6_3:85051461-85051480 | None:intergenic | 35.0% | |
| !! | TGATATGTGGTGATGGAATA+TGG | + | chr6_3:85051564-85051583 | Msa0962160:CDS | 35.0% |
| !! | AAAAGAGCAAGTATTGAAGC+AGG | - | chr6_3:85051596-85051615 | None:intergenic | 35.0% |
| ! | GCTTCAATACTTGCTCTTTT+TGG | + | chr6_3:85051596-85051615 | Msa0962160:CDS | 35.0% |
| !! | GATAGGGTTGATACTTTCTT+AGG | + | chr6_3:85051665-85051684 | Msa0962160:CDS | 35.0% |
| GTAGGTCAATTATATCGGGA+CGG | + | chr6_3:85046309-85046328 | Msa0962160:intron | 40.0% | |
| GAAGATAGGGTAGTTGACAA+TGG | + | chr6_3:85046436-85046455 | Msa0962160:CDS | 40.0% | |
| ! | GTTAACTGATTCCTCCATGA+TGG | - | chr6_3:85046595-85046614 | None:intergenic | 40.0% |
| !!! | TAATGTCTCTGCTGGTCTTT+TGG | + | chr6_3:85046708-85046727 | Msa0962160:CDS | 40.0% |
| !!! | AATGTCTCTGCTGGTCTTTT+GGG | + | chr6_3:85046709-85046728 | Msa0962160:CDS | 40.0% |
| ! | ACTTGTGTTGTTGCTTCTTC+TGG | + | chr6_3:85046823-85046842 | Msa0962160:CDS | 40.0% |
| ! | TCCTCCTGTTTTATGGGAAA+AGG | + | chr6_3:85047117-85047136 | Msa0962160:intron | 40.0% |
| ! | CCTCCTGTTTTATGGGAAAA+GGG | + | chr6_3:85047118-85047137 | Msa0962160:intron | 40.0% |
| TTCTGTCAGGATTAGAACTC+GGG | + | chr6_3:85047190-85047209 | Msa0962160:intron | 40.0% | |
| ! | TGTCTGGAATATATGAGCCT+TGG | + | chr6_3:85047742-85047761 | Msa0962160:intron | 40.0% |
| TCTTGGTATAAGCTGAACCA+TGG | - | chr6_3:85047846-85047865 | None:intergenic | 40.0% | |
| !!! | ACCCATTTTGGTTGATCTAG+TGG | + | chr6_3:85048037-85048056 | Msa0962160:intron | 40.0% |
| CACCACTAGATCAACCAAAA+TGG | - | chr6_3:85048042-85048061 | None:intergenic | 40.0% | |
| ! | ATTCTCTCTGGTGCCAATTT+CGG | + | chr6_3:85048111-85048130 | Msa0962160:intron | 40.0% |
| ATTGCTATGTAGGGCTATGA+GGG | - | chr6_3:85048336-85048355 | None:intergenic | 40.0% | |
| TATTGCTATGTAGGGCTATG+AGG | - | chr6_3:85048337-85048356 | None:intergenic | 40.0% | |
| ! | GTGTTGCTGTAATCATCTTG+AGG | + | chr6_3:85048370-85048389 | Msa0962160:intron | 40.0% |
| TTGCTGTAATCATCTTGAGG+AGG | + | chr6_3:85048373-85048392 | Msa0962160:intron | 40.0% | |
| AAATTCGCTCATAAGGCAAC+CGG | - | chr6_3:85048440-85048459 | None:intergenic | 40.0% | |
| CATTGTCAAATAGCGGCTAT+AGG | + | chr6_3:85048569-85048588 | Msa0962160:intron | 40.0% | |
| TTGTCAAATAGCGGCTATAG+GGG | + | chr6_3:85048571-85048590 | Msa0962160:intron | 40.0% | |
| GTCAAATAACGGCTATACTC+TGG | + | chr6_3:85048677-85048696 | Msa0962160:intron | 40.0% | |
| GCAATAGCACTCTAGTATAG+TGG | + | chr6_3:85048785-85048804 | Msa0962160:intron | 40.0% | |
| ! | ATGTTGTCAATTGCGGATTG+AGG | - | chr6_3:85048832-85048851 | None:intergenic | 40.0% |
| GATTCACTTGTATGAACAGG+AGG | + | chr6_3:85049014-85049033 | Msa0962160:intron | 40.0% | |
| CTTGTATGAACAGGAGGATT+TGG | + | chr6_3:85049020-85049039 | Msa0962160:intron | 40.0% | |
| GGATTTGGGAGTTACCTATT+TGG | + | chr6_3:85049035-85049054 | Msa0962160:CDS | 40.0% | |
| ! | TTAAGGATCCTAAGTTGGGA+TGG | + | chr6_3:85049102-85049121 | Msa0962160:CDS | 40.0% |
| GCAATTATCCATCCCAACTT+AGG | - | chr6_3:85049113-85049132 | None:intergenic | 40.0% | |
| TTTCAGATTGAACACGTGTC+TGG | + | chr6_3:85049232-85049251 | Msa0962160:intron | 40.0% | |
| GTCATGAAAACAACACGTGT+TGG | - | chr6_3:85049261-85049280 | None:intergenic | 40.0% | |
| ACCATTGGATCAAGATCAGA+TGG | + | chr6_3:85049346-85049365 | Msa0962160:intron | 40.0% | |
| ACCATCTGATCTTGATCCAA+TGG | - | chr6_3:85049350-85049369 | None:intergenic | 40.0% | |
| ATGGTCCAGAATTCAATGCA+TGG | + | chr6_3:85049365-85049384 | Msa0962160:intron | 40.0% | |
| TCACGTAGTTAGTACTTTGG+TGG | - | chr6_3:85049476-85049495 | None:intergenic | 40.0% | |
| ! | CAGTGGTTACTTTGCTAGTT+TGG | - | chr6_3:85049760-85049779 | None:intergenic | 40.0% |
| GCTTCCTGGAAAAGTAGAAA+AGG | - | chr6_3:85049854-85049873 | None:intergenic | 40.0% | |
| CAACAATTTCACTTGCTTCC+TGG | - | chr6_3:85049868-85049887 | None:intergenic | 40.0% | |
| CAGGAAGCAAGTGAAATTGT+TGG | + | chr6_3:85049866-85049885 | Msa0962160:intron | 40.0% | |
| TTTCAAGCCTTCCCTTCATT+AGG | + | chr6_3:85049960-85049979 | Msa0962160:CDS | 40.0% | |
| TTTGAGTCCTAATGAAGGGA+AGG | - | chr6_3:85049970-85049989 | None:intergenic | 40.0% | |
| AATGTATCAGTTCTCCTTGG+AGG | + | chr6_3:85050255-85050274 | Msa0962160:CDS | 40.0% | |
| TTCTTTCTTGGGGAGTAATG+TGG | + | chr6_3:85050280-85050299 | Msa0962160:CDS | 40.0% | |
| GAGGGTCATTGGTACAAAAA+AGG | + | chr6_3:85050321-85050340 | Msa0962160:CDS | 40.0% | |
| CATTGGTACAAAAAAGGCCT+TGG | + | chr6_3:85050327-85050346 | Msa0962160:CDS | 40.0% | |
| TGTAACCTTGGATTCCTTGA+AGG | - | chr6_3:85050362-85050381 | None:intergenic | 40.0% | |
| TTCAAGGAATCCAAGGTTAC+AGG | + | chr6_3:85050361-85050380 | Msa0962160:CDS | 40.0% | |
| TCAAGGAATCCAAGGTTACA+GGG | + | chr6_3:85050362-85050381 | Msa0962160:CDS | 40.0% | |
| TGAAACTTACCCTGTAACCT+TGG | - | chr6_3:85050374-85050393 | None:intergenic | 40.0% | |
| AGTTGTATAGACCATCTCCA+AGG | - | chr6_3:85050617-85050636 | None:intergenic | 40.0% | |
| GGTGCTAACTCATACCTTAT+TGG | + | chr6_3:85050644-85050663 | Msa0962160:CDS | 40.0% | |
| TGGGTTTGTATAGTCAACTC+CGG | + | chr6_3:85050664-85050683 | Msa0962160:CDS | 40.0% | |
| TAAGATAACTCAGGACTCGA+GGG | - | chr6_3:85050735-85050754 | None:intergenic | 40.0% | |
| CCACTAATTGCAAACCATGT+AGG | - | chr6_3:85050801-85050820 | None:intergenic | 40.0% | |
| ! | CCTACATGGTTTGCAATTAG+TGG | + | chr6_3:85050798-85050817 | Msa0962160:CDS | 40.0% |
| TTTAGTTGAGGGAAGATGTG+CGG | - | chr6_3:85050861-85050880 | None:intergenic | 40.0% | |
| GCATTGCAAAATGCTAAGGT+TGG | - | chr6_3:85050918-85050937 | None:intergenic | 40.0% | |
| ! | TTTTGCAATGCCTATGGTTG+TGG | + | chr6_3:85050927-85050946 | Msa0962160:CDS | 40.0% |
| ATCTGTTAGTCCACAACCAT+AGG | - | chr6_3:85050940-85050959 | None:intergenic | 40.0% | |
| ! | ATGGTTGTGGACTAACAGAT+TGG | + | chr6_3:85050940-85050959 | Msa0962160:CDS | 40.0% |
| !!! | GTTTTCCATAGGTTGATGCT+AGG | - | chr6_3:85050968-85050987 | None:intergenic | 40.0% |
| !! | CCATTGTTGTGCCGATTATT+TGG | - | chr6_3:85051160-85051179 | None:intergenic | 40.0% |
| CCAAATAATCGGCACAACAA+TGG | + | chr6_3:85051157-85051176 | Msa0962160:CDS | 40.0% | |
| ! | TACAAAGCATTTCCTGACCT+AGG | + | chr6_3:85051215-85051234 | Msa0962160:CDS | 40.0% |
| ! | CTTTTATGTGTTCCTAGGTC+AGG | - | chr6_3:85051230-85051249 | None:intergenic | 40.0% |
| TTGCGGTACACAATTGCATA+GGG | - | chr6_3:85051266-85051285 | None:intergenic | 40.0% | |
| CAAAGCATGAGGCAATTATC+CGG | - | chr6_3:85051326-85051345 | None:intergenic | 40.0% | |
| ! | GATTAAGGATTCGGTTGGTA+AGG | + | chr6_3:85051382-85051401 | Msa0962160:CDS | 40.0% |
| !! | AAAGGTATTGCCATAGCCAT+TGG | - | chr6_3:85051428-85051447 | None:intergenic | 40.0% |
| TTTGCCATTGACATGTGTGT+TGG | + | chr6_3:85051464-85051483 | Msa0962160:CDS | 40.0% | |
| ACTTCCAACACACATGTCAA+TGG | - | chr6_3:85051471-85051490 | None:intergenic | 40.0% | |
| TGTTTGGGAAAAGGTTGACA+AGG | + | chr6_3:85051502-85051521 | Msa0962160:CDS | 40.0% | |
| !! | GTTGCTTCTGGTTTGATATG+TGG | + | chr6_3:85051551-85051570 | Msa0962160:CDS | 40.0% |
| ! | TCTGGTTTGATATGTGGTGA+TGG | + | chr6_3:85051557-85051576 | Msa0962160:CDS | 40.0% |
| AAGAACTTCATGCAAATGGG+AGG | - | chr6_3:85051629-85051648 | None:intergenic | 40.0% | |
| !! | GATTTGGTTCGGATACTCCA+AGG | - | chr6_3:85046379-85046398 | None:intergenic | 45.0% |
| CCAGCAGAGACATTAAGTGA+AGG | - | chr6_3:85046703-85046722 | None:intergenic | 45.0% | |
| CCTTCACTTAATGTCTCTGC+TGG | + | chr6_3:85046700-85046719 | Msa0962160:CDS | 45.0% | |
| ! | CCCTTTTCCCATAAAACAGG+AGG | - | chr6_3:85047121-85047140 | None:intergenic | 45.0% |
| ! | CAGCCCTTTTCCCATAAAAC+AGG | - | chr6_3:85047124-85047143 | None:intergenic | 45.0% |
| !!! | GGAAAAGGGCTGTTGTTTTC+TGG | + | chr6_3:85047132-85047151 | Msa0962160:intron | 45.0% |
| ! | GAGGGGTTTAGTGTTGAACT+TGG | + | chr6_3:85047433-85047452 | Msa0962160:intron | 45.0% |
| ATGAGCCTTGGAATAGCAAC+AGG | + | chr6_3:85047754-85047773 | Msa0962160:intron | 45.0% | |
| TTTGGTTGATCTAGTGGTGC+TGG | + | chr6_3:85048043-85048062 | Msa0962160:intron | 45.0% | |
| CTAAAGAGGAACACACTCCA+AGG | - | chr6_3:85048080-85048099 | None:intergenic | 45.0% | |
| CTTGGAGTGTGTTCCTCTTT+AGG | + | chr6_3:85048078-85048097 | Msa0962160:intron | 45.0% | |
| TGGGTCAAGACATTGGGTTT+AGG | - | chr6_3:85048298-85048317 | None:intergenic | 45.0% | |
| ! | CTAGGTTGGGTCAAGACATT+GGG | - | chr6_3:85048304-85048323 | None:intergenic | 45.0% |
| ! | ACTAGGTTGGGTCAAGACAT+TGG | - | chr6_3:85048305-85048324 | None:intergenic | 45.0% |
| TTGCTATGTAGGGCTATGAG+GGG | - | chr6_3:85048335-85048354 | None:intergenic | 45.0% | |
| CTGTAATCATCTTGAGGAGG+AGG | + | chr6_3:85048376-85048395 | Msa0962160:intron | 45.0% | |
| TTGGTATCACATATCTGCCC+CGG | + | chr6_3:85048418-85048437 | Msa0962160:intron | 45.0% | |
| AATTCGCTCATAAGGCAACC+GGG | - | chr6_3:85048439-85048458 | None:intergenic | 45.0% | |
| CTCAGTTGTGCCTCTTAGAA+AGG | + | chr6_3:85049166-85049185 | Msa0962160:CDS | 45.0% | |
| CTGGACCATGCATTGAATTC+TGG | - | chr6_3:85049373-85049392 | None:intergenic | 45.0% | |
| GCCGTTGAATCAATATCGGA+TGG | - | chr6_3:85049454-85049473 | None:intergenic | 45.0% | |
| GGTGGCCGTTGAATCAATAT+CGG | - | chr6_3:85049458-85049477 | None:intergenic | 45.0% | |
| ! | TTTGCTAGTTTGGCTCCTTG+AGG | - | chr6_3:85049750-85049769 | None:intergenic | 45.0% |
| ! | TGGTTCTATACAGCTGCTGA+TGG | + | chr6_3:85049930-85049949 | Msa0962160:CDS | 45.0% |
| GGTTCTATACAGCTGCTGAT+GGG | + | chr6_3:85049931-85049950 | Msa0962160:CDS | 45.0% | |
| TCCTTGGAGGAGTTCTTTCT+TGG | + | chr6_3:85050268-85050287 | Msa0962160:CDS | 45.0% | |
| CCTTGGAGGAGTTCTTTCTT+GGG | + | chr6_3:85050269-85050288 | Msa0962160:CDS | 45.0% | |
| CTTGGAGGAGTTCTTTCTTG+GGG | + | chr6_3:85050270-85050289 | Msa0962160:CDS | 45.0% | |
| CCTCTCATAGAAACCAGAGA+GGG | + | chr6_3:85050303-85050322 | Msa0962160:CDS | 45.0% | |
| TAGAAACCAGAGAGGGTCAT+TGG | + | chr6_3:85050310-85050329 | Msa0962160:CDS | 45.0% | |
| TTTGTACCAATGACCCTCTC+TGG | - | chr6_3:85050319-85050338 | None:intergenic | 45.0% | |
| TGGATTCCTTGAAGGTTGCT+GGG | - | chr6_3:85050354-85050373 | None:intergenic | 45.0% | |
| TTGGATTCCTTGAAGGTTGC+TGG | - | chr6_3:85050355-85050374 | None:intergenic | 45.0% | |
| AGCAACCTTCAAGGAATCCA+AGG | + | chr6_3:85050354-85050373 | Msa0962160:CDS | 45.0% | |
| CTGCAGAACTCAATGGTGTA+AGG | - | chr6_3:85050571-85050590 | None:intergenic | 45.0% | |
| CTTACACCATTGAGTTCTGC+AGG | + | chr6_3:85050569-85050588 | Msa0962160:intron | 45.0% | |
| ATAGCCATAGCCATGATCCT+TGG | + | chr6_3:85050597-85050616 | Msa0962160:CDS | 45.0% | |
| ATCTCCAAGGATCATGGCTA+TGG | - | chr6_3:85050604-85050623 | None:intergenic | 45.0% | |
| ATAGCCATGATCCTTGGAGA+TGG | + | chr6_3:85050603-85050622 | Msa0962160:CDS | 45.0% | |
| TAGACCATCTCCAAGGATCA+TGG | - | chr6_3:85050610-85050629 | None:intergenic | 45.0% | |
| GGGTTTGTATAGTCAACTCC+GGG | + | chr6_3:85050665-85050684 | Msa0962160:CDS | 45.0% | |
| GTAAGATAACTCAGGACTCG+AGG | - | chr6_3:85050736-85050755 | None:intergenic | 45.0% | |
| TATCTTACGATGATCAGCGC+CGG | + | chr6_3:85050748-85050767 | Msa0962160:CDS | 45.0% | |
| ATGCTAAGGTTGGAGCAATC+AGG | - | chr6_3:85050908-85050927 | None:intergenic | 45.0% | |
| ! | CATTTTCTCAATCGGAGCGT+GGG | + | chr6_3:85050992-85051011 | Msa0962160:CDS | 45.0% |
| GTTGCGGTACACAATTGCAT+AGG | - | chr6_3:85051267-85051286 | None:intergenic | 45.0% | |
| TGCAATTGTGTACCGCAACA+TGG | + | chr6_3:85051268-85051287 | Msa0962160:CDS | 45.0% | |
| !! | AAGGATTCGGTTGGTAAGGT+AGG | + | chr6_3:85051386-85051405 | Msa0962160:CDS | 45.0% |
| !! | AGGATTCGGTTGGTAAGGTA+GGG | + | chr6_3:85051387-85051406 | Msa0962160:CDS | 45.0% |
| GAGGTTCATACCACTTCCAA+TGG | + | chr6_3:85051409-85051428 | Msa0962160:CDS | 45.0% | |
| CATACCACTTCCAATGGCTA+TGG | + | chr6_3:85051415-85051434 | Msa0962160:CDS | 45.0% | |
| ATTGCCATAGCCATTGGAAG+TGG | - | chr6_3:85051422-85051441 | None:intergenic | 45.0% | |
| GGAAAAGGTTGACAAGGCAA+AGG | + | chr6_3:85051508-85051527 | Msa0962160:CDS | 45.0% | |
| ! | AACAGCAGGTGCAAAAGCAT+CGG | - | chr6_3:85051534-85051553 | None:intergenic | 45.0% |
| ATCAAACCAGAAGCAACAGC+AGG | - | chr6_3:85051548-85051567 | None:intergenic | 45.0% | |
| !! | TTTATATTTAATTAATAGTT+TGG | + | chr6_3:85048001-85048020 | Msa0962160:intron | 5.0% |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr6_3:85046117-85046136 | None:intergenic | 50.0% | |
| GGTCAATTATATCGGGACGG+AGG | + | chr6_3:85046312-85046331 | Msa0962160:intron | 50.0% | |
| AGAGATGTCAACGTGACAGC+TGG | + | chr6_3:85048178-85048197 | Msa0962160:intron | 50.0% | |
| GAGATGTCAACGTGACAGCT+GGG | + | chr6_3:85048179-85048198 | Msa0962160:intron | 50.0% | |
| AGATGTCAACGTGACAGCTG+GGG | + | chr6_3:85048180-85048199 | Msa0962160:intron | 50.0% | |
| TGTCTTGACCCAACCTAGTG+AGG | + | chr6_3:85048306-85048325 | Msa0962160:intron | 50.0% | |
| TGCTATGTAGGGCTATGAGG+GGG | - | chr6_3:85048334-85048353 | None:intergenic | 50.0% | |
| ATTCGCTCATAAGGCAACCG+GGG | - | chr6_3:85048438-85048457 | None:intergenic | 50.0% | |
| TGAGCAGTTGCAGTACCACT+TGG | - | chr6_3:85049705-85049724 | None:intergenic | 50.0% | |
| AACAGCTTCCACACTCCTCA+AGG | + | chr6_3:85049732-85049751 | Msa0962160:CDS | 50.0% | |
| ! | TATACAGCTGCTGATGGGTG+TGG | + | chr6_3:85049936-85049955 | Msa0962160:CDS | 50.0% |
| CCCAAGAAAGAACTCCTCCA+AGG | - | chr6_3:85050272-85050291 | None:intergenic | 50.0% | |
| GCCTCTCATAGAAACCAGAG+AGG | + | chr6_3:85050302-85050321 | Msa0962160:CDS | 50.0% | |
| ! | CCCTCTCTGGTTTCTATGAG+AGG | - | chr6_3:85050306-85050325 | None:intergenic | 50.0% |
| TCGTGCTTGACTGTATTCGG+TGG | + | chr6_3:85050442-85050461 | Msa0962160:intron | 50.0% | |
| ! | GCTTGACTGTATTCGGTGGA+TGG | + | chr6_3:85050446-85050465 | Msa0962160:intron | 50.0% |
| TCAACTCCGGGACAAACGAA+GGG | + | chr6_3:85050677-85050696 | Msa0962160:CDS | 50.0% | |
| TGGTCCCTAGCATCAACCTA+TGG | + | chr6_3:85050960-85050979 | Msa0962160:CDS | 50.0% | |
| CCACGCTCCGATTGAGAAAA+TGG | - | chr6_3:85050994-85051013 | None:intergenic | 50.0% | |
| ! | CCATTTTCTCAATCGGAGCG+TGG | + | chr6_3:85050991-85051010 | Msa0962160:CDS | 50.0% |
| GATGTTCATCATGACTCCGC+AGG | - | chr6_3:85051057-85051076 | None:intergenic | 50.0% | |
| TGGCTCACAAACATGGATCG+CGG | - | chr6_3:85051140-85051159 | None:intergenic | 50.0% | |
| ACACAATTGCATAGGGCGCA+GGG | - | chr6_3:85051259-85051278 | None:intergenic | 50.0% | |
| TACACAATTGCATAGGGCGC+AGG | - | chr6_3:85051260-85051279 | None:intergenic | 50.0% | |
| TACCGCAACATGGCGATACT+CGG | + | chr6_3:85051278-85051297 | Msa0962160:CDS | 50.0% | |
| ATGGCGATACTCGGAGTACA+AGG | + | chr6_3:85051287-85051306 | Msa0962160:CDS | 50.0% | |
| ATTCTTTGGCGCAGCGATTG+TGG | + | chr6_3:85051352-85051371 | Msa0962160:CDS | 50.0% | |
| !! | ATTCGGTTGGTAAGGTAGGG+AGG | + | chr6_3:85051390-85051409 | Msa0962160:CDS | 50.0% |
| ! | TTTGCACCTGCTGTTGCTTC+TGG | + | chr6_3:85051539-85051558 | Msa0962160:CDS | 50.0% |
| CTATACTACTCCCTCCGTCC+CGG | + | chr6_3:85046100-85046119 | Msa0962160:intron | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr6_3:85046113-85046132 | None:intergenic | 55.0% | |
| !! | TCTAGTGGTGCTGGCTTGCT+TGG | + | chr6_3:85048052-85048071 | Msa0962160:intron | 55.0% |
| !! | CTAGTGGTGCTGGCTTGCTT+GGG | + | chr6_3:85048053-85048072 | Msa0962160:intron | 55.0% |
| ! | CTCTCTGGTGCCAATTTCGG+TGG | + | chr6_3:85048114-85048133 | Msa0962160:intron | 55.0% |
| TCATCTTGAGGAGGAGGACC+CGG | + | chr6_3:85048382-85048401 | Msa0962160:intron | 55.0% | |
| ! | GTTTGGCTCCTTGAGGAGTG+TGG | - | chr6_3:85049743-85049762 | None:intergenic | 55.0% |
| CTTGAAGGTTGCTGGGACCA+AGG | - | chr6_3:85050347-85050366 | None:intergenic | 55.0% | |
| CTTGGTCCCAGCAACCTTCA+AGG | + | chr6_3:85050345-85050364 | Msa0962160:CDS | 55.0% | |
| GTCAACTCCGGGACAAACGA+AGG | + | chr6_3:85050676-85050695 | Msa0962160:CDS | 55.0% | |
| CATCTGCCCTTCGTTTGTCC+CGG | - | chr6_3:85050686-85050705 | None:intergenic | 55.0% | |
| GGCAGATGCTCTACCTGTAG+CGG | + | chr6_3:85050698-85050717 | Msa0962160:CDS | 55.0% | |
| GGAGAGTCTTGATCCGCTAC+AGG | - | chr6_3:85050714-85050733 | None:intergenic | 55.0% | |
| AGGGAAGATGTGCGGCAATG+TGG | - | chr6_3:85050853-85050872 | None:intergenic | 55.0% | |
| !! | CTTGCTAGTCTTGCAGCCTG+CGG | + | chr6_3:85051038-85051057 | Msa0962160:CDS | 55.0% |
| CAAAACCGGCTACCTTACCC+TGG | + | chr6_3:85051109-85051128 | Msa0962160:CDS | 55.0% | |
| ! | CTCCGAGTATCGCCATGTTG+CGG | - | chr6_3:85051283-85051302 | None:intergenic | 55.0% |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr6_3:85046114-85046133 | None:intergenic | 60.0% | |
| !! | TGCTGGCTTGCTTGGGACCT+TGG | + | chr6_3:85048060-85048079 | Msa0962160:intron | 60.0% |
| TGTCAACGTGACAGCTGGGG+CGG | + | chr6_3:85048183-85048202 | Msa0962160:intron | 60.0% | |
| AGGGGGAGCCTCACTAGGTT+GGG | - | chr6_3:85048317-85048336 | None:intergenic | 60.0% | |
| CTATGAGGGGGAGCCTCACT+AGG | - | chr6_3:85048322-85048341 | None:intergenic | 60.0% | |
| TACCAAGCCACCTACCCTGC+CGG | - | chr6_3:85048404-85048423 | None:intergenic | 60.0% | |
| TTCTCAATCGGAGCGTGGGC+TGG | + | chr6_3:85050996-85051015 | Msa0962160:CDS | 60.0% | |
| !! | TGGGCTGGTGCATCACATGG+TGG | + | chr6_3:85051011-85051030 | Msa0962160:CDS | 60.0% |
| CGAAGCCAGGGTAAGGTAGC+CGG | - | chr6_3:85051117-85051136 | None:intergenic | 60.0% | |
| GTCAACGTGACAGCTGGGGC+GGG | + | chr6_3:85048184-85048203 | Msa0962160:intron | 65.0% | |
| GAGGGGGAGCCTCACTAGGT+TGG | - | chr6_3:85048318-85048337 | None:intergenic | 65.0% | |
| TTGAGGAGGAGGACCCGGCA+GGG | + | chr6_3:85048387-85048406 | Msa0962160:intron | 65.0% | |
| ACCAAGCCACCTACCCTGCC+GGG | - | chr6_3:85048403-85048422 | None:intergenic | 65.0% | |
| !! | GCGTGGGCTGGTGCATCACA+TGG | + | chr6_3:85051008-85051027 | Msa0962160:CDS | 65.0% |
| ATCGCGGCGAAGCCAGGGTA+AGG | - | chr6_3:85051124-85051143 | None:intergenic | 65.0% | |
| CATGGATCGCGGCGAAGCCA+GGG | - | chr6_3:85051129-85051148 | None:intergenic | 65.0% | |
| ACATGGATCGCGGCGAAGCC+AGG | - | chr6_3:85051130-85051149 | None:intergenic | 65.0% | |
| CTTGAGGAGGAGGACCCGGC+AGG | + | chr6_3:85048386-85048405 | Msa0962160:intron | 70.0% | |
| ACCCGGCAGGGTAGGTGGCT+TGG | + | chr6_3:85048399-85048418 | Msa0962160:intron | 70.0% | |
| GGAGGAGGACCCGGCAGGGT+AGG | + | chr6_3:85048391-85048410 | Msa0962160:intron | 75.0% | |
| GGAGGACCCGGCAGGGTAGG+TGG | + | chr6_3:85048394-85048413 | Msa0962160:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 85046090 | 85051994 | 85046090 | ID=Msa0962160;Name=Msa0962160 |
| chr6_3 | mRNA | 85046090 | 85051994 | 85046090 | ID=Msa0962160-mRNA-1;Parent=Msa0962160;Name=Msa0962160-mRNA-1;_AED=0.08;_eAED=0.08;_QI=93|1|1|1|0.83|0.71|7|300|708 |
| chr6_3 | exon | 85046090 | 85046101 | 85046090 | ID=Msa0962160-mRNA-1:exon:15261;Parent=Msa0962160-mRNA-1 |
| chr6_3 | exon | 85046334 | 85046859 | 85046334 | ID=Msa0962160-mRNA-1:exon:15262;Parent=Msa0962160-mRNA-1 |
| chr6_3 | exon | 85049033 | 85049187 | 85049033 | ID=Msa0962160-mRNA-1:exon:15263;Parent=Msa0962160-mRNA-1 |
| chr6_3 | exon | 85049672 | 85049769 | 85049672 | ID=Msa0962160-mRNA-1:exon:15264;Parent=Msa0962160-mRNA-1 |
| chr6_3 | exon | 85049869 | 85050003 | 85049869 | ID=Msa0962160-mRNA-1:exon:15265;Parent=Msa0962160-mRNA-1 |
| chr6_3 | exon | 85050194 | 85050383 | 85050194 | ID=Msa0962160-mRNA-1:exon:15266;Parent=Msa0962160-mRNA-1 |
| chr6_3 | exon | 85050591 | 85051994 | 85050591 | ID=Msa0962160-mRNA-1:exon:15267;Parent=Msa0962160-mRNA-1 |
| chr6_3 | five_prime_UTR | 85046090 | 85046101 | 85046090 | ID=Msa0962160-mRNA-1:five_prime_utr;Parent=Msa0962160-mRNA-1 |
| chr6_3 | five_prime_UTR | 85046334 | 85046414 | 85046334 | ID=Msa0962160-mRNA-1:five_prime_utr;Parent=Msa0962160-mRNA-1 |
| chr6_3 | CDS | 85046415 | 85046859 | 85046415 | ID=Msa0962160-mRNA-1:cds;Parent=Msa0962160-mRNA-1 |
| chr6_3 | CDS | 85049033 | 85049187 | 85049033 | ID=Msa0962160-mRNA-1:cds;Parent=Msa0962160-mRNA-1 |
| chr6_3 | CDS | 85049672 | 85049769 | 85049672 | ID=Msa0962160-mRNA-1:cds;Parent=Msa0962160-mRNA-1 |
| chr6_3 | CDS | 85049869 | 85050003 | 85049869 | ID=Msa0962160-mRNA-1:cds;Parent=Msa0962160-mRNA-1 |
| chr6_3 | CDS | 85050194 | 85050383 | 85050194 | ID=Msa0962160-mRNA-1:cds;Parent=Msa0962160-mRNA-1 |
| chr6_3 | CDS | 85050591 | 85051694 | 85050591 | ID=Msa0962160-mRNA-1:cds;Parent=Msa0962160-mRNA-1 |
| chr6_3 | three_prime_UTR | 85051695 | 85051994 | 85051695 | ID=Msa0962160-mRNA-1:three_prime_utr;Parent=Msa0962160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
