Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0132240 | XP_024641799.2 | 90.000 | 400 | 4 | 1 | 1 | 400 | 1 | 364 | 0.0 | 743 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0132240 | sp|Q8L518|CK2_ARATH | 59.452 | 365 | 111 | 2 | 17 | 381 | 20 | 347 | 2.36e-161 | 460 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0132240 | A0A396JTL9 | 90.000 | 400 | 4 | 1 | 1 | 400 | 1 | 364 | 0.0 | 743 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003560 | Msa0132240 | 0.817553 | 3.105911e-52 | -8.615850e-47 |
| Msa0038020 | Msa0132240 | 0.961101 | 2.588275e-119 | -8.615850e-47 |
| Msa0085720 | Msa0132240 | 0.915841 | 3.643274e-85 | -8.615850e-47 |
| Msa0132240 | Msa0175050 | 0.826887 | 2.120150e-54 | -8.615850e-47 |
| Msa0132240 | Msa0266240 | 0.811089 | 8.336158e-51 | -8.615850e-47 |
| Msa0132240 | Msa0287700 | 0.821295 | 4.357087e-53 | -8.615850e-47 |
| Msa0132240 | Msa0312310 | 0.820925 | 5.301035e-53 | -8.615850e-47 |
| Msa0132240 | Msa0328380 | 0.814811 | 1.273869e-51 | -8.615850e-47 |
| Msa0132240 | Msa0370870 | 0.805812 | 1.114421e-49 | -8.615850e-47 |
| Msa0132240 | Msa0431020 | 0.812875 | 3.401499e-51 | -8.615850e-47 |
| Msa0132240 | Msa0598560 | 0.805086 | 1.581975e-49 | -8.615850e-47 |
| Msa0132240 | Msa0622600 | 0.815866 | 7.423214e-52 | -8.615850e-47 |
| Msa0132240 | Msa0724560 | 0.817376 | 3.405574e-52 | -8.615850e-47 |
| Msa0132240 | Msa0724950 | 0.840177 | 1.017320e-57 | -8.615850e-47 |
| Msa0132240 | Msa0748680 | 0.818329 | 2.075209e-52 | -8.615850e-47 |
| Msa0132240 | Msa0763080 | 0.838790 | 2.331999e-57 | -8.615850e-47 |
| Msa0132240 | Msa0845070 | 0.841858 | 3.681067e-58 | -8.615850e-47 |
| Msa0132240 | Msa0848900 | 0.814734 | 1.324795e-51 | -8.615850e-47 |
| Msa0132240 | Msa0881160 | 0.813507 | 2.471962e-51 | -8.615850e-47 |
| Msa0132240 | Msa0944730 | 0.825949 | 3.546163e-54 | -8.615850e-47 |
| Msa0132240 | Msa0962160 | 0.803414 | 3.526959e-49 | -8.615850e-47 |
| Msa0132240 | Msa1174310 | 0.826208 | 3.077709e-54 | -8.615850e-47 |
| Msa0132240 | Msa1215890 | 0.801124 | 1.044106e-48 | -8.615850e-47 |
| Msa0132240 | Msa1222280 | 0.852093 | 5.787955e-61 | -8.615850e-47 |
| Msa0132240 | Msa1235400 | 0.847124 | 1.409980e-59 | -8.615850e-47 |
| Msa0132240 | Msa1314770 | 0.828539 | 8.498910e-55 | -8.615850e-47 |
| Msa0132240 | Msa1350720 | 0.817613 | 3.010951e-52 | -8.615850e-47 |
| Msa0132240 | Msa1360240 | 0.822462 | 2.338370e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0132240 | MtrunA17_Chr1g0201341 | 90.000 | 400 | 4 | 1 | 1 | 400 | 1 | 364 | 0.0 | 743 |
| Msa0132240 | MtrunA17_Chr6g0466631 | 70.899 | 378 | 74 | 1 | 1 | 378 | 1 | 342 | 0.0 | 566 |
| Msa0132240 | MtrunA17_Chr3g0081621 | 58.396 | 399 | 128 | 3 | 2 | 400 | 113 | 473 | 5.92e-170 | 484 |
| Msa0132240 | MtrunA17_Chr8g0354091 | 56.474 | 363 | 114 | 3 | 16 | 378 | 36 | 354 | 3.00e-149 | 427 |
| Msa0132240 | MtrunA17_Chr2g0307011 | 30.000 | 360 | 193 | 7 | 27 | 378 | 57 | 365 | 2.28e-42 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0132240 | AT1G74320.1 | 59.452 | 365 | 111 | 2 | 17 | 381 | 20 | 347 | 2.40e-162 | 460 |
| Msa0132240 | AT4G09760.1 | 57.520 | 379 | 122 | 4 | 1 | 378 | 1 | 341 | 5.35e-161 | 456 |
| Msa0132240 | AT4G09760.2 | 57.520 | 379 | 122 | 4 | 1 | 378 | 1 | 341 | 5.35e-161 | 456 |
| Msa0132240 | AT1G71697.1 | 57.068 | 382 | 126 | 3 | 1 | 380 | 1 | 346 | 5.73e-160 | 454 |
| Msa0132240 | AT4G09760.3 | 51.341 | 261 | 88 | 4 | 1 | 260 | 1 | 223 | 7.34e-88 | 267 |
| Msa0132240 | AT4G09760.4 | 50.000 | 246 | 84 | 4 | 1 | 245 | 1 | 208 | 3.15e-79 | 243 |
| Msa0132240 | AT2G26830.1 | 28.649 | 370 | 200 | 9 | 18 | 375 | 43 | 360 | 2.49e-44 | 158 |
Find 110 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATAATTCAATTGTCTTTA+TGG | 0.034762 | 1_3:-63232542 | None:intergenic |
| ACCATATATTCTGGGGCTTA+TGG | 0.170812 | 1_3:+63235716 | Msa0132240:CDS |
| GTTAAGGAAGCCTACTTTAT+TGG | 0.174086 | 1_3:+63235908 | Msa0132240:CDS |
| ACTGCGGTGGCTTCGGATTT+AGG | 0.182122 | 1_3:+63232604 | Msa0132240:CDS |
| GCTCATCAACCTTCCACTTT+TGG | 0.232131 | 1_3:+63236158 | Msa0132240:three_prime_UTR |
| TAAGCCCTCTTAGAGGAAAT+TGG | 0.249578 | 1_3:+63233675 | Msa0132240:intron |
| TTTAATTCATTGAATCAAAA+TGG | 0.260999 | 1_3:+63232519 | Msa0132240:exon |
| TGCATCCCAAGAAGAATTAA+TGG | 0.261372 | 1_3:+63232573 | Msa0132240:CDS |
| CCATATATTCTGGGGCTTAT+GGG | 0.262925 | 1_3:+63235717 | Msa0132240:CDS |
| CTCGACTCTGTTTCTTCTTC+GGG | 0.267579 | 1_3:+63232073 | Msa0132240:five_prime_UTR |
| AGTCTTATGAATGATAAATT+AGG | 0.274268 | 1_3:+63236243 | Msa0132240:three_prime_UTR |
| TTACTTCCATTAATTCTTCT+TGG | 0.282291 | 1_3:-63232579 | None:intergenic |
| GCCAAATCAAACGGAAATTC+TGG | 0.282987 | 1_3:+63232483 | Msa0132240:five_prime_UTR |
| GGCAGAGGTTTCAGCAATAT+TGG | 0.288043 | 1_3:+63235886 | Msa0132240:CDS |
| ACTCGACTCTGTTTCTTCTT+CGG | 0.289865 | 1_3:+63232072 | Msa0132240:five_prime_UTR |
| TGTCTTAGTGAAGTTAGTTT+TGG | 0.292001 | 1_3:+63236018 | Msa0132240:three_prime_UTR |
| CCGTTTAAAGTGCGTATATT+TGG | 0.299170 | 1_3:-63231833 | None:intergenic |
| GGGCTTATGGGGACTTATTT+CGG | 0.306924 | 1_3:+63235729 | Msa0132240:CDS |
| ACCAGAATTTCCGTTTGATT+TGG | 0.315235 | 1_3:-63232484 | None:intergenic |
| CCCATAAGCCCCAGAATATA+TGG | 0.317567 | 1_3:-63235717 | None:intergenic |
| CTCTCGCAAACCATATATTC+TGG | 0.321780 | 1_3:+63235707 | Msa0132240:CDS |
| TGCCACAATGACCTACAATA+TGG | 0.321926 | 1_3:+63235098 | Msa0132240:CDS |
| AGATGATGAAATAAATATTC+TGG | 0.330658 | 1_3:+63235037 | Msa0132240:CDS |
| AAGGTTCTGGTTCGTTTATA+TGG | 0.332124 | 1_3:+63232736 | Msa0132240:CDS |
| TGCCAGGCATATGAAGCTTA+TGG | 0.344971 | 1_3:-63234824 | None:intergenic |
| CAGCGAACCGTTCACAGTTT+CGG | 0.346273 | 1_3:-63235955 | None:intergenic |
| AGTGAATCAATACATATAAA+AGG | 0.356442 | 1_3:-63236277 | None:intergenic |
| GCACAAAGAAGGCTCATATT+TGG | 0.357584 | 1_3:+63234844 | Msa0132240:CDS |
| TGACTCTGAAATATCATCTT+TGG | 0.359929 | 1_3:+63234779 | Msa0132240:CDS |
| AGTAATTACTGCGGTGGCTT+CGG | 0.364014 | 1_3:+63232597 | Msa0132240:CDS |
| GGCAAATCATTTCTGTGAAA+TGG | 0.366684 | 1_3:+63235291 | Msa0132240:CDS |
| TACTTCCATTAATTCTTCTT+GGG | 0.366751 | 1_3:-63232578 | None:intergenic |
| AACCGTTCACAGTTTCGGTT+TGG | 0.369826 | 1_3:-63235950 | None:intergenic |
| CCAAATATACGCACTTTAAA+CGG | 0.377122 | 1_3:+63231833 | Msa0132240:five_prime_UTR |
| ACCGTTCACAGTTTCGGTTT+GGG | 0.382302 | 1_3:-63235949 | None:intergenic |
| TTGATTTGGCTATAAAATAG+TGG | 0.387991 | 1_3:-63232470 | None:intergenic |
| CTTCTTGCTCGTTTCACTAC+TGG | 0.401801 | 1_3:+63232841 | Msa0132240:CDS |
| TTGGTCATTGCACCTTTCAA+TGG | 0.406927 | 1_3:-63232664 | None:intergenic |
| TGTGAAGGATATCAAGAGAT+TGG | 0.415057 | 1_3:+63235071 | Msa0132240:CDS |
| TGGTGATTTGAGGAAGGTTC+TGG | 0.417603 | 1_3:+63232723 | Msa0132240:CDS |
| TCATAATGTTACCATATTGT+AGG | 0.424013 | 1_3:-63235109 | None:intergenic |
| GGTTTCAGCAATATTGGTTA+AGG | 0.427253 | 1_3:+63235892 | Msa0132240:CDS |
| GTGTTGTATATATAGAGAAT+TGG | 0.448191 | 1_3:-63231902 | None:intergenic |
| TTTGGCTTTCTAGACTCTCT+CGG | 0.457270 | 1_3:+63234743 | Msa0132240:intron |
| TTGAATGCGTGTATCTCTGC+AGG | 0.457561 | 1_3:-63233724 | None:intergenic |
| TGATTCACCTTAGCATTGCT+TGG | 0.458377 | 1_3:-63235658 | None:intergenic |
| GGGATTGTTGATAATGAGAA+TGG | 0.462912 | 1_3:+63236179 | Msa0132240:three_prime_UTR |
| ATATGAGCCTTCTTTGTGCC+AGG | 0.463313 | 1_3:-63234840 | None:intergenic |
| TCTCGCAAACCATATATTCT+GGG | 0.466032 | 1_3:+63235708 | Msa0132240:CDS |
| ATTATCAACAATCCCAAAAG+TGG | 0.467941 | 1_3:-63236171 | None:intergenic |
| CATATATTCTGGGGCTTATG+GGG | 0.475167 | 1_3:+63235718 | Msa0132240:CDS |
| GAACATGAGGTGTATCACTA+TGG | 0.476295 | 1_3:-63235324 | None:intergenic |
| AATAACGTGGTTAAGTGATA+AGG | 0.479027 | 1_3:-63232047 | None:intergenic |
| GTGTATCTCTGCAGGGGAGC+CGG | 0.489448 | 1_3:-63233716 | None:intergenic |
| TTCCATAAGCTTCATATGCC+TGG | 0.491466 | 1_3:+63234822 | Msa0132240:CDS |
| CTGGTTCGTTTATATGGTGA+AGG | 0.494682 | 1_3:+63232742 | Msa0132240:CDS |
| TTTCACAGAAATGATTTGCC+AGG | 0.500589 | 1_3:-63235288 | None:intergenic |
| TCTATTATAATAACAGCTAA+AGG | 0.504163 | 1_3:+63236053 | Msa0132240:three_prime_UTR |
| ACAATATGGTAACATTATGA+TGG | 0.504904 | 1_3:+63235112 | Msa0132240:CDS |
| GAGCAAGAAGGCGTGGACCT+TGG | 0.507822 | 1_3:-63232828 | None:intergenic |
| CTCATATTTGGCAGAGAATG+AGG | 0.510591 | 1_3:+63234856 | Msa0132240:CDS |
| CAGAACTCGAGGAGCGTCAA+AGG | 0.515090 | 1_3:+63235484 | Msa0132240:intron |
| TCATATGCCTGGCACAAAGA+AGG | 0.515429 | 1_3:+63234833 | Msa0132240:CDS |
| CGTGTCTATCTCAGTTCTGA+AGG | 0.521286 | 1_3:+63235513 | Msa0132240:CDS |
| TGAAATAAATATTCTGGAGA+AGG | 0.522645 | 1_3:+63235043 | Msa0132240:CDS |
| GTTGATGAGTCCAATAAAGT+AGG | 0.531218 | 1_3:-63235918 | None:intergenic |
| AAGACAATTGAATTATTGAA+AGG | 0.536432 | 1_3:+63232547 | Msa0132240:CDS |
| CTTGACTACAGTAAATATCC+TGG | 0.536643 | 1_3:+63235346 | Msa0132240:CDS |
| CTCTGAAATATCATCTTTGG+TGG | 0.538937 | 1_3:+63234782 | Msa0132240:CDS |
| GATTCCCGCAGTCAAGGATC+CGG | 0.540987 | 1_3:+63233697 | Msa0132240:CDS |
| TTGCAAGTGATTCCATTGAA+AGG | 0.546711 | 1_3:+63232652 | Msa0132240:CDS |
| ACAAAGAATATGCAAGGCAG+AGG | 0.550525 | 1_3:+63235871 | Msa0132240:CDS |
| GGAGCCGGATCCTTGACTGC+GGG | 0.554079 | 1_3:-63233701 | None:intergenic |
| GGATTGTTGATAATGAGAAT+GGG | 0.557573 | 1_3:+63236180 | Msa0132240:three_prime_UTR |
| TTGATTACAAAGAATATGCA+AGG | 0.569982 | 1_3:+63235865 | Msa0132240:CDS |
| AAATTGGATTCCCGCAGTCA+AGG | 0.570798 | 1_3:+63233691 | Msa0132240:CDS |
| CTGGAGAAGGAGTTGTGTGA+AGG | 0.572508 | 1_3:+63235056 | Msa0132240:CDS |
| AGTTTCGGTTTGGGCAACAA+TGG | 0.574842 | 1_3:-63235940 | None:intergenic |
| AATGGAAGTAATTACTGCGG+TGG | 0.576381 | 1_3:+63232591 | Msa0132240:CDS |
| CAAGAAACCAAGCAATGCTA+AGG | 0.579970 | 1_3:+63235651 | Msa0132240:CDS |
| AAATGATGGTGATTTGAGGA+AGG | 0.580359 | 1_3:+63232717 | Msa0132240:CDS |
| TGAATGCGTGTATCTCTGCA+GGG | 0.581050 | 1_3:-63233723 | None:intergenic |
| CAATCCTATCGCATATGACC+TGG | 0.584037 | 1_3:+63235270 | Msa0132240:CDS |
| CGTGGTCGTTCGATCAAGAT+CGG | 0.589761 | 1_3:+63233753 | Msa0132240:CDS |
| TTTGCCAGGTCATATGCGAT+AGG | 0.595086 | 1_3:-63235274 | None:intergenic |
| TTTCACTACTGGTAGAGTTG+AGG | 0.595164 | 1_3:+63232852 | Msa0132240:CDS |
| TACCATATTGTAGGTCATTG+TGG | 0.595534 | 1_3:-63235100 | None:intergenic |
| GTGAAACGAGCAAGAAGGCG+TGG | 0.597624 | 1_3:-63232835 | None:intergenic |
| CAAAGTGTTCACATCATCGA+TGG | 0.599429 | 1_3:-63232632 | None:intergenic |
| TGTATCTCAAAGCATGGCCA+AGG | 0.610665 | 1_3:+63232811 | Msa0132240:CDS |
| GGACGGTCAAGATTCAAGCT+TGG | 0.611942 | 1_3:+63233774 | Msa0132240:CDS |
| TCAACAATCCCAAAAGTGGA+AGG | 0.612132 | 1_3:-63236167 | None:intergenic |
| GAAAAGTTTGTGCTCCCCAA+AGG | 0.617608 | 1_3:+63234986 | Msa0132240:CDS |
| CAGTAGTGAAACGAGCAAGA+AGG | 0.618606 | 1_3:-63232840 | None:intergenic |
| TTTGAGTGTATCTCAAAGCA+TGG | 0.621729 | 1_3:+63232805 | Msa0132240:CDS |
| GTCGTTCGATCAAGATCGGA+CGG | 0.623305 | 1_3:+63233757 | Msa0132240:CDS |
| GCCCAAACCGAAACTGTGAA+CGG | 0.623493 | 1_3:+63235948 | Msa0132240:CDS |
| AAGATGATATTTCAGAGTCA+CGG | 0.624385 | 1_3:-63234776 | None:intergenic |
| ATGCTTTGAGATACACTCAA+AGG | 0.634081 | 1_3:-63232803 | None:intergenic |
| GGGAGCCGGATCCTTGACTG+CGG | 0.635491 | 1_3:-63233702 | None:intergenic |
| CTCGCAAACCATATATTCTG+GGG | 0.653675 | 1_3:+63235709 | Msa0132240:CDS |
| CAGAGTCGAGTTGAATAACG+TGG | 0.657530 | 1_3:-63232060 | None:intergenic |
| TAAGGTGAATCAGTTAATGA+CGG | 0.658131 | 1_3:+63235669 | Msa0132240:CDS |
| TTACTGTAGTCAAGAACATG+AGG | 0.664678 | 1_3:-63235337 | None:intergenic |
| GAATGCGTGTATCTCTGCAG+GGG | 0.667130 | 1_3:-63233722 | None:intergenic |
| ATATGATGAACCAGAACTCG+AGG | 0.670863 | 1_3:+63235473 | Msa0132240:intron |
| CGATCTTGATCGAACGACCA+CGG | 0.671964 | 1_3:-63233752 | None:intergenic |
| AATCACACACATGATGCTAG+TGG | 0.675552 | 1_3:-63235978 | None:intergenic |
| ATTAATGGAAGTAATTACTG+CGG | 0.713521 | 1_3:+63232588 | Msa0132240:CDS |
| ACACGCATTCAAGACATCCG+TGG | 0.720128 | 1_3:+63233735 | Msa0132240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTTTTTAAATAAAA+TGG | - | chr1_3:63234910-63234929 | None:intergenic | 0.0% |
| !! | AGAAAATAAAAAATTGAATT+GGG | - | chr1_3:63232294-63232313 | None:intergenic | 10.0% |
| !! | TAGAAAATAAAAAATTGAAT+TGG | - | chr1_3:63232295-63232314 | None:intergenic | 10.0% |
| !! | ACATAATATAGATATAAAAA+AGG | - | chr1_3:63232912-63232931 | None:intergenic | 10.0% |
| !!! | TTTATATCTATATTATGTTT+TGG | + | chr1_3:63232914-63232933 | Msa0132240:intron | 10.0% |
| !!! | CACTATTATTTTTATTAAAA+TGG | - | chr1_3:63233090-63233109 | None:intergenic | 10.0% |
| !! | AAAATATTCAATAGAAAATA+AGG | + | chr1_3:63233578-63233597 | Msa0132240:intron | 10.0% |
| !!! | TTAAATTTCTTTTTTAAAGA+TGG | - | chr1_3:63234216-63234235 | None:intergenic | 10.0% |
| !!! | TCTTTAAAAAAGAAATTTAA+TGG | + | chr1_3:63234216-63234235 | Msa0132240:intron | 10.0% |
| !! | TAATAGAACTAAATAATTTA+TGG | + | chr1_3:63234486-63234505 | Msa0132240:intron | 10.0% |
| !! | AAGTATATAACTATATATTA+TGG | + | chr1_3:63235787-63235806 | Msa0132240:intron | 10.0% |
| !! | AGTATATAACTATATATTAT+GGG | + | chr1_3:63235788-63235807 | Msa0132240:intron | 10.0% |
| !!! | TTTTTTTTTTTTGAGTGATA+AGG | + | chr1_3:63231979-63231998 | Msa0132240:intron | 15.0% |
| !!! | ATTTTTTTATAACCCAATTT+GGG | - | chr1_3:63232359-63232378 | None:intergenic | 15.0% |
| !!! | AATTTTTTTATAACCCAATT+TGG | - | chr1_3:63232360-63232379 | None:intergenic | 15.0% |
| !! | TTTAATTCATTGAATCAAAA+TGG | + | chr1_3:63232519-63232538 | Msa0132240:exon | 15.0% |
| !! | ATATTATCTTGCAAAATAAA+GGG | + | chr1_3:63233986-63234005 | Msa0132240:intron | 15.0% |
| !! | AAAAAAGAAATTTAATGGAA+CGG | + | chr1_3:63234221-63234240 | Msa0132240:intron | 15.0% |
| !!! | TTCAATTGATTTTAATTCTT+TGG | - | chr1_3:63234627-63234646 | None:intergenic | 15.0% |
| !! | ATATCAATAAAAACAAAAAC+AGG | - | chr1_3:63235421-63235440 | None:intergenic | 15.0% |
| !!! | TAAGAAGTATATTTGATATT+CGG | - | chr1_3:63235593-63235612 | None:intergenic | 15.0% |
| !!! | TTTTTGATGATTTTTTCAAC+TGG | + | chr1_3:63232154-63232173 | Msa0132240:intron | 20.0% |
| !!! | TTTTGATGATTTTTTCAACT+GGG | + | chr1_3:63232155-63232174 | Msa0132240:intron | 20.0% |
| !! | TTTGAGAAAAATAGAAAACA+GGG | - | chr1_3:63232243-63232262 | None:intergenic | 20.0% |
| !!! | TTTTGAGAAAAATAGAAAAC+AGG | - | chr1_3:63232244-63232263 | None:intergenic | 20.0% |
| !!! | TATTTTATAGCCAAATCAAA+CGG | + | chr1_3:63232474-63232493 | Msa0132240:five_prime_UTR | 20.0% |
| !! | CAATAATTCAATTGTCTTTA+TGG | - | chr1_3:63232545-63232564 | None:intergenic | 20.0% |
| !! | AAGACAATTGAATTATTGAA+AGG | + | chr1_3:63232547-63232566 | Msa0132240:CDS | 20.0% |
| !! | ATTTATCTGAAAAACTTCAT+TGG | - | chr1_3:63232686-63232705 | None:intergenic | 20.0% |
| !!! | ATGAAGTTTTTCAGATAAAT+TGG | + | chr1_3:63232686-63232705 | Msa0132240:CDS | 20.0% |
| !!! | TGTTGAAATTTTCTTCAATA+GGG | + | chr1_3:63232765-63232784 | Msa0132240:CDS | 20.0% |
| !!! | TAATTTGTAGAACTAAAAAG+TGG | + | chr1_3:63233035-63233054 | Msa0132240:intron | 20.0% |
| !!! | CTTCTTAACTTGTAAAATTA+AGG | - | chr1_3:63233143-63233162 | None:intergenic | 20.0% |
| !!! | ATTTTACAAGTTAAGAAGTT+AGG | + | chr1_3:63233145-63233164 | Msa0132240:intron | 20.0% |
| !!! | AAAATCAATTTTGTTGCAAT+TGG | + | chr1_3:63233327-63233346 | Msa0132240:intron | 20.0% |
| !! | TTGAATAGAATAAACCAAAT+AGG | - | chr1_3:63233371-63233390 | None:intergenic | 20.0% |
| !! | ACAAAGCAGTAAAATATAAT+TGG | - | chr1_3:63233406-63233425 | None:intergenic | 20.0% |
| !!! | TATTTTCTAAATTTACTTGC+AGG | - | chr1_3:63233536-63233555 | None:intergenic | 20.0% |
| !! | TATTCAATAGAAAATAAGGT+AGG | + | chr1_3:63233582-63233601 | Msa0132240:intron | 20.0% |
| !! | ACTAAACTAAACTAACTTAT+AGG | - | chr1_3:63233611-63233630 | None:intergenic | 20.0% |
| !! | TATATAAAGTAGATCAAGAT+CGG | - | chr1_3:63233949-63233968 | None:intergenic | 20.0% |
| !! | CATATTATCTTGCAAAATAA+AGG | + | chr1_3:63233985-63234004 | Msa0132240:intron | 20.0% |
| !! | AGATAAAGGGAATAAATTAA+GGG | - | chr1_3:63234125-63234144 | None:intergenic | 20.0% |
| !! | AAGATAAAGGGAATAAATTA+AGG | - | chr1_3:63234126-63234145 | None:intergenic | 20.0% |
| !!! | AATTTATTCCCTTTATCTTT+TGG | + | chr1_3:63234127-63234146 | Msa0132240:intron | 20.0% |
| !! | AGAATAAATAACATGAAGAA+AGG | - | chr1_3:63234314-63234333 | None:intergenic | 20.0% |
| !! | GCATGTTTCTTTATTATTAT+TGG | - | chr1_3:63234338-63234357 | None:intergenic | 20.0% |
| !!! | TAAACAGTATGTTTTTTGAA+AGG | + | chr1_3:63234368-63234387 | Msa0132240:intron | 20.0% |
| !! | TAAATGTTCATTAGTAAACT+TGG | + | chr1_3:63234463-63234482 | Msa0132240:intron | 20.0% |
| !! | CTAAATAATTTATGGAACTA+AGG | + | chr1_3:63234494-63234513 | Msa0132240:intron | 20.0% |
| !! | AGATGATGAAATAAATATTC+TGG | + | chr1_3:63235037-63235056 | Msa0132240:CDS | 20.0% |
| !!! | CATAAGTAACTATCATATTT+TGG | - | chr1_3:63235200-63235219 | None:intergenic | 20.0% |
| !!! | CTCTAATTTTATTTTGATAC+AGG | + | chr1_3:63235228-63235247 | Msa0132240:intron | 20.0% |
| !! | TCTATTATAATAACAGCTAA+AGG | + | chr1_3:63236053-63236072 | Msa0132240:three_prime_UTR | 20.0% |
| !!! | AGTCTTATGAATGATAAATT+AGG | + | chr1_3:63236243-63236262 | Msa0132240:three_prime_UTR | 20.0% |
| !! | AGTGAATCAATACATATAAA+AGG | - | chr1_3:63236280-63236299 | None:intergenic | 20.0% |
| ! | GTGTTGTATATATAGAGAAT+TGG | - | chr1_3:63231905-63231924 | None:intergenic | 25.0% |
| ! | TCTTTGCATTAACTAATTCT+TGG | + | chr1_3:63232119-63232138 | Msa0132240:intron | 25.0% |
| ! | CTATTGCAATGAAATTATGT+GGG | - | chr1_3:63232203-63232222 | None:intergenic | 25.0% |
| ! | TTGAGAAAAATAGAAAACAG+GGG | - | chr1_3:63232242-63232261 | None:intergenic | 25.0% |
| !! | TTTTGATATCTTTCCCAAAT+TGG | + | chr1_3:63232343-63232362 | Msa0132240:intron | 25.0% |
| ! | TTTGATATCTTTCCCAAATT+GGG | + | chr1_3:63232344-63232363 | Msa0132240:intron | 25.0% |
| ! | ATTTATTTGTGCATGCAATA+AGG | + | chr1_3:63232391-63232410 | Msa0132240:intron | 25.0% |
| ! | TTTATTTGTGCATGCAATAA+GGG | + | chr1_3:63232392-63232411 | Msa0132240:intron | 25.0% |
| !!! | TTGATTTGGCTATAAAATAG+TGG | - | chr1_3:63232473-63232492 | None:intergenic | 25.0% |
| ! | TACTTCCATTAATTCTTCTT+GGG | - | chr1_3:63232581-63232600 | None:intergenic | 25.0% |
| ! | TTACTTCCATTAATTCTTCT+TGG | - | chr1_3:63232582-63232601 | None:intergenic | 25.0% |
| ! | ATTAATGGAAGTAATTACTG+CGG | + | chr1_3:63232588-63232607 | Msa0132240:CDS | 25.0% |
| !!! | AAATCACCATCATTTTTTGT+TGG | - | chr1_3:63232712-63232731 | None:intergenic | 25.0% |
| !! | GTGTTGAAATTTTCTTCAAT+AGG | + | chr1_3:63232764-63232783 | Msa0132240:CDS | 25.0% |
| !!! | TTTTTTGCATCATGAAACTA+TGG | + | chr1_3:63233224-63233243 | Msa0132240:intron | 25.0% |
| !!! | TTTGATTGTTTTGAGAAGAT+AGG | + | chr1_3:63233261-63233280 | Msa0132240:intron | 25.0% |
| ! | TTGACATATAAGAACCTATT+TGG | + | chr1_3:63233354-63233373 | Msa0132240:intron | 25.0% |
| ! | GCAAGATAATATGTTATGAT+GGG | - | chr1_3:63233978-63233997 | None:intergenic | 25.0% |
| ! | TGCAAGATAATATGTTATGA+TGG | - | chr1_3:63233979-63233998 | None:intergenic | 25.0% |
| ! | TGATCTCAAAAGCTAAAATA+TGG | - | chr1_3:63234030-63234049 | None:intergenic | 25.0% |
| ! | TAACATGAAGAAAGGAATAT+GGG | - | chr1_3:63234306-63234325 | None:intergenic | 25.0% |
| ! | ATAACATGAAGAAAGGAATA+TGG | - | chr1_3:63234307-63234326 | None:intergenic | 25.0% |
| ! | TATGTATGCATAGAAAGATA+AGG | + | chr1_3:63234407-63234426 | Msa0132240:intron | 25.0% |
| !!! | GAATTTTTTTGTTTCCTTTG+GGG | - | chr1_3:63235003-63235022 | None:intergenic | 25.0% |
| !!! | CGAATTTTTTTGTTTCCTTT+GGG | - | chr1_3:63235004-63235023 | None:intergenic | 25.0% |
| ! | CCAAAGGAAACAAAAAAATT+CGG | + | chr1_3:63235002-63235021 | Msa0132240:CDS | 25.0% |
| ! | CAAAGGAAACAAAAAAATTC+GGG | + | chr1_3:63235003-63235022 | Msa0132240:CDS | 25.0% |
| !! | TGAAATAAATATTCTGGAGA+AGG | + | chr1_3:63235043-63235062 | Msa0132240:CDS | 25.0% |
| ! | TCATAATGTTACCATATTGT+AGG | - | chr1_3:63235112-63235131 | None:intergenic | 25.0% |
| ! | ACAATATGGTAACATTATGA+TGG | + | chr1_3:63235112-63235131 | Msa0132240:CDS | 25.0% |
| !!! | GTAACTATCATATTTTGGAA+AGG | - | chr1_3:63235195-63235214 | None:intergenic | 25.0% |
| ! | CTAAGAACAAAAAATTTACC+AGG | - | chr1_3:63235367-63235386 | None:intergenic | 25.0% |
| ! | TACAAATTAATATGTCAGCA+AGG | - | chr1_3:63235454-63235473 | None:intergenic | 25.0% |
| ! | TTGATTACAAAGAATATGCA+AGG | + | chr1_3:63235865-63235884 | Msa0132240:CDS | 25.0% |
| !! | TTTTCTTTGTAATGAAGTCT+TGG | + | chr1_3:63236215-63236234 | Msa0132240:three_prime_UTR | 25.0% |
| CCAAATATACGCACTTTAAA+CGG | + | chr1_3:63231833-63231852 | Msa0132240:five_prime_UTR | 30.0% | |
| AATAACGTGGTTAAGTGATA+AGG | - | chr1_3:63232050-63232069 | None:intergenic | 30.0% | |
| CCTATTGCAATGAAATTATG+TGG | - | chr1_3:63232204-63232223 | None:intergenic | 30.0% | |
| CCACATAATTTCATTGCAAT+AGG | + | chr1_3:63232201-63232220 | Msa0132240:intron | 30.0% | |
| ! | TCTGAAACAGAGTAAAAACA+GGG | - | chr1_3:63232448-63232467 | None:intergenic | 30.0% |
| ! | ATCTGAAACAGAGTAAAAAC+AGG | - | chr1_3:63232449-63232468 | None:intergenic | 30.0% |
| AATTGGCCAACAAAAAATGA+TGG | + | chr1_3:63232703-63232722 | Msa0132240:CDS | 30.0% | |
| ! | CAAAAAATGATGGTGATTTG+AGG | + | chr1_3:63232713-63232732 | Msa0132240:CDS | 30.0% |
| ! | GTCAAGACAAGTTCTTTTAT+TGG | + | chr1_3:63233641-63233660 | Msa0132240:intron | 30.0% |
| ! | AGACAAGTTCTTTTATTGGT+AGG | + | chr1_3:63233645-63233664 | Msa0132240:intron | 30.0% |
| TTTGTCTTTCCAATCAGAAT+CGG | + | chr1_3:63233830-63233849 | Msa0132240:intron | 30.0% | |
| GAAAAATTTCTTGCAGTGAA+TGG | + | chr1_3:63233894-63233913 | Msa0132240:intron | 30.0% | |
| AGGGAATAAATTAAGGGAAA+GGG | - | chr1_3:63234119-63234138 | None:intergenic | 30.0% | |
| AAGGGAATAAATTAAGGGAA+AGG | - | chr1_3:63234120-63234139 | None:intergenic | 30.0% | |
| ACAAAAAGGAACACATTAAC+AGG | - | chr1_3:63234578-63234597 | None:intergenic | 30.0% | |
| ! | GAAAGAGTTTTACCAATACA+AGG | + | chr1_3:63234644-63234663 | Msa0132240:intron | 30.0% |
| CAAATTCATCATCCTTGTAT+TGG | - | chr1_3:63234659-63234678 | None:intergenic | 30.0% | |
| AAGATGATATTTCAGAGTCA+CGG | - | chr1_3:63234779-63234798 | None:intergenic | 30.0% | |
| !! | TGACTCTGAAATATCATCTT+TGG | + | chr1_3:63234779-63234798 | Msa0132240:CDS | 30.0% |
| ! | TGTTTTCCATGTGTTTTACT+AGG | + | chr1_3:63234946-63234965 | Msa0132240:intron | 30.0% |
| !!! | CCGAATTTTTTTGTTTCCTT+TGG | - | chr1_3:63235005-63235024 | None:intergenic | 30.0% |
| TCACACTAATTGTAAGCTAA+TGG | + | chr1_3:63235153-63235172 | Msa0132240:intron | 30.0% | |
| TAAGGTGAATCAGTTAATGA+CGG | + | chr1_3:63235669-63235688 | Msa0132240:CDS | 30.0% | |
| !! | TGTCTTAGTGAAGTTAGTTT+TGG | + | chr1_3:63236018-63236037 | Msa0132240:three_prime_UTR | 30.0% |
| ATTATCAACAATCCCAAAAG+TGG | - | chr1_3:63236174-63236193 | None:intergenic | 30.0% | |
| !! | GGATTGTTGATAATGAGAAT+GGG | + | chr1_3:63236180-63236199 | Msa0132240:three_prime_UTR | 30.0% |
| ! | CCGTTTAAAGTGCGTATATT+TGG | - | chr1_3:63231836-63231855 | None:intergenic | 35.0% |
| CTGAAACAGAGTAAAAACAG+GGG | - | chr1_3:63232447-63232466 | None:intergenic | 35.0% | |
| ACCAGAATTTCCGTTTGATT+TGG | - | chr1_3:63232487-63232506 | None:intergenic | 35.0% | |
| TGCATCCCAAGAAGAATTAA+TGG | + | chr1_3:63232573-63232592 | Msa0132240:CDS | 35.0% | |
| TTGCAAGTGATTCCATTGAA+AGG | + | chr1_3:63232652-63232671 | Msa0132240:CDS | 35.0% | |
| ! | AAATGATGGTGATTTGAGGA+AGG | + | chr1_3:63232717-63232736 | Msa0132240:CDS | 35.0% |
| !! | AAGGTTCTGGTTCGTTTATA+TGG | + | chr1_3:63232736-63232755 | Msa0132240:CDS | 35.0% |
| !! | ATGCTTTGAGATACACTCAA+AGG | - | chr1_3:63232806-63232825 | None:intergenic | 35.0% |
| TTTGAGTGTATCTCAAAGCA+TGG | + | chr1_3:63232805-63232824 | Msa0132240:CDS | 35.0% | |
| ! | GAATCCAATTTCCTCTAAGA+GGG | - | chr1_3:63233682-63233701 | None:intergenic | 35.0% |
| GTTAATGAGAACACCTATTC+AGG | - | chr1_3:63233870-63233889 | None:intergenic | 35.0% | |
| TAAAGTAGATCAAGATCGGA+CGG | - | chr1_3:63233945-63233964 | None:intergenic | 35.0% | |
| CCATTGCTCCAAAAGATAAA+GGG | - | chr1_3:63234138-63234157 | None:intergenic | 35.0% | |
| TCCATTGCTCCAAAAGATAA+AGG | - | chr1_3:63234139-63234158 | None:intergenic | 35.0% | |
| !!! | TTTATCTTTTGGAGCAATGG+AGG | + | chr1_3:63234138-63234157 | Msa0132240:intron | 35.0% |
| !!! | TTATCTTTTGGAGCAATGGA+GGG | + | chr1_3:63234139-63234158 | Msa0132240:intron | 35.0% |
| !! | TTTGCCTCTTTTGGTTGTTT+TGG | + | chr1_3:63234168-63234187 | Msa0132240:intron | 35.0% |
| TACTCCAAAACAACCAAAAG+AGG | - | chr1_3:63234175-63234194 | None:intergenic | 35.0% | |
| AGGAATATGGGCAAAAAGAA+TGG | - | chr1_3:63234294-63234313 | None:intergenic | 35.0% | |
| TCAGTTAACAACTAGTATGC+TGG | - | chr1_3:63234549-63234568 | None:intergenic | 35.0% | |
| GACATCAACAACAGACAAAA+AGG | - | chr1_3:63234592-63234611 | None:intergenic | 35.0% | |
| !! | CTCTGAAATATCATCTTTGG+TGG | + | chr1_3:63234782-63234801 | Msa0132240:CDS | 35.0% |
| ! | CATGTGTTTTACTAGGAACT+GGG | + | chr1_3:63234953-63234972 | Msa0132240:intron | 35.0% |
| TGTGAAGGATATCAAGAGAT+TGG | + | chr1_3:63235071-63235090 | Msa0132240:CDS | 35.0% | |
| TACCATATTGTAGGTCATTG+TGG | - | chr1_3:63235103-63235122 | None:intergenic | 35.0% | |
| ! | TTTCACAGAAATGATTTGCC+AGG | - | chr1_3:63235291-63235310 | None:intergenic | 35.0% |
| GGCAAATCATTTCTGTGAAA+TGG | + | chr1_3:63235291-63235310 | Msa0132240:CDS | 35.0% | |
| TTACTGTAGTCAAGAACATG+AGG | - | chr1_3:63235340-63235359 | None:intergenic | 35.0% | |
| CTTGACTACAGTAAATATCC+TGG | + | chr1_3:63235346-63235365 | Msa0132240:CDS | 35.0% | |
| GGAACACACAATAATCATTG+TGG | - | chr1_3:63235400-63235419 | None:intergenic | 35.0% | |
| CGACAGAGTGAAATTCATAA+TGG | - | chr1_3:63235544-63235563 | None:intergenic | 35.0% | |
| TACAATCACTCTTTGTACAC+AGG | + | chr1_3:63235628-63235647 | Msa0132240:intron | 35.0% | |
| TCTCGCAAACCATATATTCT+GGG | + | chr1_3:63235708-63235727 | Msa0132240:CDS | 35.0% | |
| ! | GGTTTCAGCAATATTGGTTA+AGG | + | chr1_3:63235892-63235911 | Msa0132240:CDS | 35.0% |
| GTTAAGGAAGCCTACTTTAT+TGG | + | chr1_3:63235908-63235927 | Msa0132240:CDS | 35.0% | |
| ! | GTTGATGAGTCCAATAAAGT+AGG | - | chr1_3:63235921-63235940 | None:intergenic | 35.0% |
| !! | GGGATTGTTGATAATGAGAA+TGG | + | chr1_3:63236179-63236198 | Msa0132240:three_prime_UTR | 35.0% |
| ! | ACTCGACTCTGTTTCTTCTT+CGG | + | chr1_3:63232072-63232091 | Msa0132240:five_prime_UTR | 40.0% |
| GCCAAATCAAACGGAAATTC+TGG | + | chr1_3:63232483-63232502 | Msa0132240:five_prime_UTR | 40.0% | |
| AATGGAAGTAATTACTGCGG+TGG | + | chr1_3:63232591-63232610 | Msa0132240:CDS | 40.0% | |
| ! | CAAAGTGTTCACATCATCGA+TGG | - | chr1_3:63232635-63232654 | None:intergenic | 40.0% |
| TTGGTCATTGCACCTTTCAA+TGG | - | chr1_3:63232667-63232686 | None:intergenic | 40.0% | |
| ! | CTGGTTCGTTTATATGGTGA+AGG | + | chr1_3:63232742-63232761 | Msa0132240:CDS | 40.0% |
| TTTCACTACTGGTAGAGTTG+AGG | + | chr1_3:63232852-63232871 | Msa0132240:CDS | 40.0% | |
| GATAAGAGAGTCACATACTC+TGG | - | chr1_3:63232890-63232909 | None:intergenic | 40.0% | |
| TTACCTATAAGCCCTCTTAG+AGG | + | chr1_3:63233668-63233687 | Msa0132240:intron | 40.0% | |
| ! | TTTCCTCTAAGAGGGCTTAT+AGG | - | chr1_3:63233674-63233693 | None:intergenic | 40.0% |
| TAAGCCCTCTTAGAGGAAAT+TGG | + | chr1_3:63233675-63233694 | Msa0132240:intron | 40.0% | |
| GGAATCCAATTTCCTCTAAG+AGG | - | chr1_3:63233683-63233702 | None:intergenic | 40.0% | |
| GATGACTTTCCGATTCTGAT+TGG | - | chr1_3:63233842-63233861 | None:intergenic | 40.0% | |
| AAGTCATCGATGTCCTGAAT+AGG | + | chr1_3:63233854-63233873 | Msa0132240:intron | 40.0% | |
| AGTGAATGGAAACACGCATT+CGG | + | chr1_3:63233908-63233927 | Msa0132240:intron | 40.0% | |
| !!! | CCCTTTATCTTTTGGAGCAA+TGG | + | chr1_3:63234135-63234154 | Msa0132240:intron | 40.0% |
| ! | ATGGAACGGTATTGAGTCAA+TGG | + | chr1_3:63234235-63234254 | Msa0132240:intron | 40.0% |
| ! | ACGGTATTGAGTCAATGGAA+TGG | + | chr1_3:63234240-63234259 | Msa0132240:intron | 40.0% |
| GAATGGAATCATGTGCTCTT+AGG | + | chr1_3:63234257-63234276 | Msa0132240:intron | 40.0% | |
| !!! | CTCGCTTCTTCTCTTGTTTT+TGG | + | chr1_3:63234725-63234744 | Msa0132240:intron | 40.0% |
| !! | TTTGGCTTTCTAGACTCTCT+CGG | + | chr1_3:63234743-63234762 | Msa0132240:intron | 40.0% |
| TTCCATAAGCTTCATATGCC+TGG | + | chr1_3:63234822-63234841 | Msa0132240:CDS | 40.0% | |
| GCACAAAGAAGGCTCATATT+TGG | + | chr1_3:63234844-63234863 | Msa0132240:CDS | 40.0% | |
| CTCATATTTGGCAGAGAATG+AGG | + | chr1_3:63234856-63234875 | Msa0132240:CDS | 40.0% | |
| CCAGTTCCTAGTAAAACACA+TGG | - | chr1_3:63234955-63234974 | None:intergenic | 40.0% | |
| ! | CCATGTGTTTTACTAGGAAC+TGG | + | chr1_3:63234952-63234971 | Msa0132240:intron | 40.0% |
| ! | TGTTTTACTAGGAACTGGGT+TGG | + | chr1_3:63234957-63234976 | Msa0132240:intron | 40.0% |
| GGAAACAAAAAAATTCGGGC+TGG | + | chr1_3:63235007-63235026 | Msa0132240:CDS | 40.0% | |
| TGCCACAATGACCTACAATA+TGG | + | chr1_3:63235098-63235117 | Msa0132240:CDS | 40.0% | |
| GAACATGAGGTGTATCACTA+TGG | - | chr1_3:63235327-63235346 | None:intergenic | 40.0% | |
| ATATGATGAACCAGAACTCG+AGG | + | chr1_3:63235473-63235492 | Msa0132240:intron | 40.0% | |
| CAAGAAACCAAGCAATGCTA+AGG | + | chr1_3:63235651-63235670 | Msa0132240:CDS | 40.0% | |
| TGATTCACCTTAGCATTGCT+TGG | - | chr1_3:63235661-63235680 | None:intergenic | 40.0% | |
| CTCTCGCAAACCATATATTC+TGG | + | chr1_3:63235707-63235726 | Msa0132240:CDS | 40.0% | |
| CTCGCAAACCATATATTCTG+GGG | + | chr1_3:63235709-63235728 | Msa0132240:CDS | 40.0% | |
| !! | ACCATATATTCTGGGGCTTA+TGG | + | chr1_3:63235716-63235735 | Msa0132240:CDS | 40.0% |
| !! | CCATATATTCTGGGGCTTAT+GGG | + | chr1_3:63235717-63235736 | Msa0132240:CDS | 40.0% |
| !! | CATATATTCTGGGGCTTATG+GGG | + | chr1_3:63235718-63235737 | Msa0132240:CDS | 40.0% |
| ACAAAGAATATGCAAGGCAG+AGG | + | chr1_3:63235871-63235890 | Msa0132240:CDS | 40.0% | |
| AATCACACACATGATGCTAG+TGG | - | chr1_3:63235981-63236000 | None:intergenic | 40.0% | |
| !! | CTCATCAACCTTCCACTTTT+GGG | + | chr1_3:63236159-63236178 | Msa0132240:three_prime_UTR | 40.0% |
| TCAACAATCCCAAAAGTGGA+AGG | - | chr1_3:63236170-63236189 | None:intergenic | 40.0% | |
| !! | CAGAGTCGAGTTGAATAACG+TGG | - | chr1_3:63232063-63232082 | None:intergenic | 45.0% |
| ! | CTCGACTCTGTTTCTTCTTC+GGG | + | chr1_3:63232073-63232092 | Msa0132240:five_prime_UTR | 45.0% |
| AGTAATTACTGCGGTGGCTT+CGG | + | chr1_3:63232597-63232616 | Msa0132240:CDS | 45.0% | |
| TGGTGATTTGAGGAAGGTTC+TGG | + | chr1_3:63232723-63232742 | Msa0132240:CDS | 45.0% | |
| TGTATCTCAAAGCATGGCCA+AGG | + | chr1_3:63232811-63232830 | Msa0132240:CDS | 45.0% | |
| CAGTAGTGAAACGAGCAAGA+AGG | - | chr1_3:63232843-63232862 | None:intergenic | 45.0% | |
| CTTCTTGCTCGTTTCACTAC+TGG | + | chr1_3:63232841-63232860 | Msa0132240:CDS | 45.0% | |
| AAATTGGATTCCCGCAGTCA+AGG | + | chr1_3:63233691-63233710 | Msa0132240:CDS | 45.0% | |
| TGAATGCGTGTATCTCTGCA+GGG | - | chr1_3:63233726-63233745 | None:intergenic | 45.0% | |
| TTGAATGCGTGTATCTCTGC+AGG | - | chr1_3:63233727-63233746 | None:intergenic | 45.0% | |
| GTGAATGGAAACACGCATTC+GGG | + | chr1_3:63233909-63233928 | Msa0132240:intron | 45.0% | |
| ! | GGGCTATCATTTGCCTCTTT+TGG | + | chr1_3:63234159-63234178 | Msa0132240:intron | 45.0% |
| TGGAATCATGTGCTCTTAGG+TGG | + | chr1_3:63234260-63234279 | Msa0132240:intron | 45.0% | |
| TGCCAGGCATATGAAGCTTA+TGG | - | chr1_3:63234827-63234846 | None:intergenic | 45.0% | |
| TCATATGCCTGGCACAAAGA+AGG | + | chr1_3:63234833-63234852 | Msa0132240:CDS | 45.0% | |
| ATATGAGCCTTCTTTGTGCC+AGG | - | chr1_3:63234843-63234862 | None:intergenic | 45.0% | |
| GAAAAGTTTGTGCTCCCCAA+AGG | + | chr1_3:63234986-63235005 | Msa0132240:CDS | 45.0% | |
| CAATCCTATCGCATATGACC+TGG | + | chr1_3:63235270-63235289 | Msa0132240:CDS | 45.0% | |
| TTTGCCAGGTCATATGCGAT+AGG | - | chr1_3:63235277-63235296 | None:intergenic | 45.0% | |
| ! | CGTGTCTATCTCAGTTCTGA+AGG | + | chr1_3:63235513-63235532 | Msa0132240:CDS | 45.0% |
| CCCATAAGCCCCAGAATATA+TGG | - | chr1_3:63235720-63235739 | None:intergenic | 45.0% | |
| GGGCTTATGGGGACTTATTT+CGG | + | chr1_3:63235729-63235748 | Msa0132240:CDS | 45.0% | |
| GGCAGAGGTTTCAGCAATAT+TGG | + | chr1_3:63235886-63235905 | Msa0132240:CDS | 45.0% | |
| !! | AGTTTCGGTTTGGGCAACAA+TGG | - | chr1_3:63235943-63235962 | None:intergenic | 45.0% |
| ACCGTTCACAGTTTCGGTTT+GGG | - | chr1_3:63235952-63235971 | None:intergenic | 45.0% | |
| AACCGTTCACAGTTTCGGTT+TGG | - | chr1_3:63235953-63235972 | None:intergenic | 45.0% | |
| ! | GCTCATCAACCTTCCACTTT+TGG | + | chr1_3:63236158-63236177 | Msa0132240:three_prime_UTR | 45.0% |
| GAATGCGTGTATCTCTGCAG+GGG | - | chr1_3:63233725-63233744 | None:intergenic | 50.0% | |
| ACACGCATTCAAGACATCCG+TGG | + | chr1_3:63233735-63233754 | Msa0132240:CDS | 50.0% | |
| CGATCTTGATCGAACGACCA+CGG | - | chr1_3:63233755-63233774 | None:intergenic | 50.0% | |
| CGTGGTCGTTCGATCAAGAT+CGG | + | chr1_3:63233753-63233772 | Msa0132240:CDS | 50.0% | |
| GTCGTTCGATCAAGATCGGA+CGG | + | chr1_3:63233757-63233776 | Msa0132240:CDS | 50.0% | |
| GGACGGTCAAGATTCAAGCT+TGG | + | chr1_3:63233774-63233793 | Msa0132240:CDS | 50.0% | |
| CTGGAGAAGGAGTTGTGTGA+AGG | + | chr1_3:63235056-63235075 | Msa0132240:CDS | 50.0% | |
| GCCCAAACCGAAACTGTGAA+CGG | + | chr1_3:63235948-63235967 | Msa0132240:CDS | 50.0% | |
| CAGCGAACCGTTCACAGTTT+CGG | - | chr1_3:63235958-63235977 | None:intergenic | 50.0% | |
| ACTGCGGTGGCTTCGGATTT+AGG | + | chr1_3:63232604-63232623 | Msa0132240:CDS | 55.0% | |
| GTGAAACGAGCAAGAAGGCG+TGG | - | chr1_3:63232838-63232857 | None:intergenic | 55.0% | |
| GATTCCCGCAGTCAAGGATC+CGG | + | chr1_3:63233697-63233716 | Msa0132240:CDS | 55.0% | |
| CTTTGACGCTCCTCGAGTTC+TGG | - | chr1_3:63235486-63235505 | None:intergenic | 55.0% | |
| !! | CAGAACTCGAGGAGCGTCAA+AGG | + | chr1_3:63235484-63235503 | Msa0132240:intron | 55.0% |
| ! | GAGCAAGAAGGCGTGGACCT+TGG | - | chr1_3:63232831-63232850 | None:intergenic | 60.0% |
| GTGTATCTCTGCAGGGGAGC+CGG | - | chr1_3:63233719-63233738 | None:intergenic | 60.0% | |
| GGAGCCGGATCCTTGACTGC+GGG | - | chr1_3:63233704-63233723 | None:intergenic | 65.0% | |
| GGGAGCCGGATCCTTGACTG+CGG | - | chr1_3:63233705-63233724 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 63231826 | 63236331 | 63231826 | ID=Msa0132240;Name=Msa0132240 |
| chr1_3 | mRNA | 63231826 | 63236331 | 63231826 | ID=Msa0132240-mRNA-1;Parent=Msa0132240;Name=Msa0132240-mRNA-1;_AED=0.27;_eAED=0.27;_QI=275|0.88|0.9|1|0.77|0.7|10|333|400 |
| chr1_3 | exon | 63231826 | 63231966 | 63231826 | ID=Msa0132240-mRNA-1:exon:21162;Parent=Msa0132240-mRNA-1 |
| chr1_3 | exon | 63232032 | 63232094 | 63232032 | ID=Msa0132240-mRNA-1:exon:21163;Parent=Msa0132240-mRNA-1 |
| chr1_3 | exon | 63232467 | 63232891 | 63232467 | ID=Msa0132240-mRNA-1:exon:21164;Parent=Msa0132240-mRNA-1 |
| chr1_3 | exon | 63233688 | 63233795 | 63233688 | ID=Msa0132240-mRNA-1:exon:21165;Parent=Msa0132240-mRNA-1 |
| chr1_3 | exon | 63234756 | 63234877 | 63234756 | ID=Msa0132240-mRNA-1:exon:21166;Parent=Msa0132240-mRNA-1 |
| chr1_3 | exon | 63234968 | 63235163 | 63234968 | ID=Msa0132240-mRNA-1:exon:21167;Parent=Msa0132240-mRNA-1 |
| chr1_3 | exon | 63235250 | 63235367 | 63235250 | ID=Msa0132240-mRNA-1:exon:21168;Parent=Msa0132240-mRNA-1 |
| chr1_3 | exon | 63235487 | 63235534 | 63235487 | ID=Msa0132240-mRNA-1:exon:21169;Parent=Msa0132240-mRNA-1 |
| chr1_3 | exon | 63235650 | 63235750 | 63235650 | ID=Msa0132240-mRNA-1:exon:21170;Parent=Msa0132240-mRNA-1 |
| chr1_3 | exon | 63235843 | 63236331 | 63235843 | ID=Msa0132240-mRNA-1:exon:21171;Parent=Msa0132240-mRNA-1 |
| chr1_3 | five_prime_UTR | 63231826 | 63231966 | 63231826 | ID=Msa0132240-mRNA-1:five_prime_utr;Parent=Msa0132240-mRNA-1 |
| chr1_3 | five_prime_UTR | 63232032 | 63232094 | 63232032 | ID=Msa0132240-mRNA-1:five_prime_utr;Parent=Msa0132240-mRNA-1 |
| chr1_3 | five_prime_UTR | 63232467 | 63232537 | 63232467 | ID=Msa0132240-mRNA-1:five_prime_utr;Parent=Msa0132240-mRNA-1 |
| chr1_3 | CDS | 63232538 | 63232891 | 63232538 | ID=Msa0132240-mRNA-1:cds;Parent=Msa0132240-mRNA-1 |
| chr1_3 | CDS | 63233688 | 63233795 | 63233688 | ID=Msa0132240-mRNA-1:cds;Parent=Msa0132240-mRNA-1 |
| chr1_3 | CDS | 63234756 | 63234877 | 63234756 | ID=Msa0132240-mRNA-1:cds;Parent=Msa0132240-mRNA-1 |
| chr1_3 | CDS | 63234968 | 63235163 | 63234968 | ID=Msa0132240-mRNA-1:cds;Parent=Msa0132240-mRNA-1 |
| chr1_3 | CDS | 63235250 | 63235367 | 63235250 | ID=Msa0132240-mRNA-1:cds;Parent=Msa0132240-mRNA-1 |
| chr1_3 | CDS | 63235487 | 63235534 | 63235487 | ID=Msa0132240-mRNA-1:cds;Parent=Msa0132240-mRNA-1 |
| chr1_3 | CDS | 63235650 | 63235750 | 63235650 | ID=Msa0132240-mRNA-1:cds;Parent=Msa0132240-mRNA-1 |
| chr1_3 | CDS | 63235843 | 63235998 | 63235843 | ID=Msa0132240-mRNA-1:cds;Parent=Msa0132240-mRNA-1 |
| chr1_3 | three_prime_UTR | 63235999 | 63236331 | 63235999 | ID=Msa0132240-mRNA-1:three_prime_utr;Parent=Msa0132240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
