Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0038020 | sp|Q8L518|CK2_ARATH | 57.534 | 365 | 112 | 3 | 17 | 375 | 20 | 347 | 8.11e-153 | 438 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003560 | Msa0038020 | 0.819045 | 1.427179e-52 | -8.615850e-47 |
| Msa0029850 | Msa0038020 | 0.819461 | 1.147682e-52 | -8.615850e-47 |
| Msa0038020 | Msa0077180 | 0.819788 | 9.662100e-53 | -8.615850e-47 |
| Msa0038020 | Msa0085720 | 0.941818 | 2.142622e-101 | -8.615850e-47 |
| Msa0038020 | Msa0120370 | -0.800897 | 1.161449e-48 | -8.615850e-47 |
| Msa0038020 | Msa0124550 | 0.831816 | 1.347067e-55 | -8.615850e-47 |
| Msa0038020 | Msa0125050 | 0.816083 | 6.640598e-52 | -8.615850e-47 |
| Msa0038020 | Msa0130520 | 0.804227 | 2.389668e-49 | -8.615850e-47 |
| Msa0038020 | Msa0132240 | 0.961101 | 2.588275e-119 | -8.615850e-47 |
| Msa0038020 | Msa0140170 | 0.855635 | 5.528045e-62 | -8.615850e-47 |
| Msa0038020 | Msa0140510 | -0.811704 | 6.129392e-51 | -8.615850e-47 |
| Msa0038020 | Msa0163620 | -0.800314 | 1.527229e-48 | -8.615850e-47 |
| Msa0038020 | Msa0169820 | 0.834190 | 3.458943e-56 | -8.615850e-47 |
| Msa0038020 | Msa0175050 | 0.863248 | 2.850997e-64 | -8.615850e-47 |
| Msa0038020 | Msa0183010 | -0.810928 | 9.032240e-51 | -8.615850e-47 |
| Msa0038020 | Msa0199800 | -0.827143 | 1.840628e-54 | -8.615850e-47 |
| Msa0038020 | Msa0216000 | 0.821953 | 3.069089e-53 | -8.615850e-47 |
| Msa0038020 | Msa0233610 | 0.805853 | 1.092035e-49 | -8.615850e-47 |
| Msa0038020 | Msa0250670 | 0.808215 | 3.455522e-50 | -8.615850e-47 |
| Msa0038020 | Msa0266210 | 0.841408 | 4.840240e-58 | -8.615850e-47 |
| Msa0038020 | Msa0266240 | 0.842818 | 2.050349e-58 | -8.615850e-47 |
| Msa0038020 | Msa0274630 | 0.805347 | 1.394710e-49 | -8.615850e-47 |
| Msa0038020 | Msa0287670 | 0.844016 | 9.810918e-59 | -8.615850e-47 |
| Msa0038020 | Msa0287700 | 0.835917 | 1.269394e-56 | -8.615850e-47 |
| Msa0038020 | Msa0289400 | 0.836640 | 8.314260e-57 | -8.615850e-47 |
| Msa0038020 | Msa0312310 | 0.846866 | 1.658896e-59 | -8.615850e-47 |
| Msa0038020 | Msa0328380 | 0.811826 | 5.765436e-51 | -8.615850e-47 |
| Msa0038020 | Msa0362060 | 0.809680 | 1.679002e-50 | -8.615850e-47 |
| Msa0038020 | Msa0363100 | 0.805934 | 1.050375e-49 | -8.615850e-47 |
| Msa0038020 | Msa0363170 | 0.817287 | 3.566219e-52 | -8.615850e-47 |
| Msa0038020 | Msa0370870 | 0.822444 | 2.360859e-53 | -8.615850e-47 |
| Msa0038020 | Msa0388030 | -0.833080 | 6.547251e-56 | -8.615850e-47 |
| Msa0038020 | Msa0389810 | 0.811203 | 7.872962e-51 | -8.615850e-47 |
| Msa0038020 | Msa0404700 | 0.823317 | 1.478159e-53 | -8.615850e-47 |
| Msa0038020 | Msa0417650 | 0.816837 | 4.499921e-52 | -8.615850e-47 |
| Msa0038020 | Msa0417730 | 0.804432 | 2.166885e-49 | -8.615850e-47 |
| Msa0038020 | Msa0431020 | 0.806899 | 6.574719e-50 | -8.615850e-47 |
| Msa0038020 | Msa0442250 | 0.801411 | 9.118940e-49 | -8.615850e-47 |
| Msa0038020 | Msa0462540 | 0.802133 | 6.483489e-49 | -8.615850e-47 |
| Msa0038020 | Msa0464900 | 0.835738 | 1.409034e-56 | -8.615850e-47 |
| Msa0038020 | Msa0468130 | 0.815227 | 1.030046e-51 | -8.615850e-47 |
| Msa0038020 | Msa0482180 | 0.827554 | 1.467424e-54 | -8.615850e-47 |
| Msa0038020 | Msa0491520 | 0.813981 | 1.943945e-51 | -8.615850e-47 |
| Msa0038020 | Msa0505060 | 0.815497 | 8.968013e-52 | -8.615850e-47 |
| Msa0038020 | Msa0519190 | 0.813575 | 2.388269e-51 | -8.615850e-47 |
| Msa0038020 | Msa0519390 | 0.856346 | 3.422714e-62 | -8.615850e-47 |
| Msa0038020 | Msa0530650 | 0.840138 | 1.041648e-57 | -8.615850e-47 |
| Msa0038020 | Msa0537770 | 0.824666 | 7.132221e-54 | -8.615850e-47 |
| Msa0038020 | Msa0557950 | -0.823481 | 1.353538e-53 | -8.615850e-47 |
| Msa0038020 | Msa0573040 | 0.824716 | 6.940877e-54 | -8.615850e-47 |
| Msa0038020 | Msa0573580 | 0.830461 | 2.899382e-55 | -8.615850e-47 |
| Msa0038020 | Msa0587190 | 0.843453 | 1.388520e-58 | -8.615850e-47 |
| Msa0038020 | Msa0612680 | -0.805035 | 1.621338e-49 | -8.615850e-47 |
| Msa0038020 | Msa0615340 | 0.802235 | 6.178146e-49 | -8.615850e-47 |
| Msa0038020 | Msa0615360 | 0.812345 | 4.441820e-51 | -8.615850e-47 |
| Msa0038020 | Msa0622600 | 0.805420 | 1.346399e-49 | -8.615850e-47 |
| Msa0038020 | Msa0626990 | 0.836188 | 1.083082e-56 | -8.615850e-47 |
| Msa0038020 | Msa0627350 | 0.840195 | 1.006158e-57 | -8.615850e-47 |
| Msa0038020 | Msa0653320 | -0.827535 | 1.482823e-54 | -8.615850e-47 |
| Msa0038020 | Msa0679550 | 0.849741 | 2.661258e-60 | -8.615850e-47 |
| Msa0038020 | Msa0724560 | 0.849228 | 3.700009e-60 | -8.615850e-47 |
| Msa0038020 | Msa0724950 | 0.851392 | 9.146868e-61 | -8.615850e-47 |
| Msa0038020 | Msa0748680 | 0.838369 | 2.996236e-57 | -8.615850e-47 |
| Msa0038020 | Msa0751210 | 0.805190 | 1.504725e-49 | -8.615850e-47 |
| Msa0038020 | Msa0761890 | 0.810729 | 9.971725e-51 | -8.615850e-47 |
| Msa0038020 | Msa0763080 | 0.849552 | 3.006203e-60 | -8.615850e-47 |
| Msa0038020 | Msa0794140 | 0.807166 | 5.772668e-50 | -8.615850e-47 |
| Msa0038020 | Msa0827470 | 0.810269 | 1.253746e-50 | -8.615850e-47 |
| Msa0038020 | Msa0845070 | 0.869591 | 2.761195e-66 | -8.615850e-47 |
| Msa0038020 | Msa0848900 | 0.847643 | 1.015349e-59 | -8.615850e-47 |
| Msa0038020 | Msa0876360 | 0.809429 | 1.900218e-50 | -8.615850e-47 |
| Msa0038020 | Msa0881160 | 0.802362 | 5.815372e-49 | -8.615850e-47 |
| Msa0038020 | Msa0930820 | 0.810490 | 1.123505e-50 | -8.615850e-47 |
| Msa0038020 | Msa0944730 | 0.864602 | 1.080474e-64 | -8.615850e-47 |
| Msa0038020 | Msa0962160 | 0.812425 | 4.266688e-51 | -8.615850e-47 |
| Msa0038020 | Msa0978700 | 0.803980 | 2.691057e-49 | -8.615850e-47 |
| Msa0038020 | Msa1021510 | 0.843143 | 1.679076e-58 | -8.615850e-47 |
| Msa0038020 | Msa1048700 | 0.811470 | 6.891315e-51 | -8.615850e-47 |
| Msa0038020 | Msa1070840 | 0.802816 | 4.688907e-49 | -8.615850e-47 |
| Msa0038020 | Msa1072530 | -0.828331 | 9.540818e-55 | -8.615850e-47 |
| Msa0038020 | Msa1092090 | 0.815443 | 9.220650e-52 | -8.615850e-47 |
| Msa0038020 | Msa1105500 | 0.838185 | 3.341622e-57 | -8.615850e-47 |
| Msa0038020 | Msa1109820 | 0.827982 | 1.157820e-54 | -8.615850e-47 |
| Msa0038020 | Msa1118760 | 0.804831 | 1.788644e-49 | -8.615850e-47 |
| Msa0038020 | Msa1133570 | 0.838436 | 2.879793e-57 | -8.615850e-47 |
| Msa0038020 | Msa1135880 | 0.811415 | 7.081317e-51 | -8.615850e-47 |
| Msa0038020 | Msa1158660 | 0.803151 | 3.997832e-49 | -8.615850e-47 |
| Msa0038020 | Msa1174310 | 0.870649 | 1.244304e-66 | -8.615850e-47 |
| Msa0038020 | Msa1215890 | 0.829389 | 5.290827e-55 | -8.615850e-47 |
| Msa0038020 | Msa1222280 | 0.851884 | 6.634256e-61 | -8.615850e-47 |
| Msa0038020 | Msa1228160 | -0.826674 | 2.383670e-54 | -8.615850e-47 |
| Msa0038020 | Msa1229610 | 0.813372 | 2.645950e-51 | -8.615850e-47 |
| Msa0038020 | Msa1229850 | 0.815012 | 1.149454e-51 | -8.615850e-47 |
| Msa0038020 | Msa1230830 | 0.807126 | 5.887225e-50 | -8.615850e-47 |
| Msa0038020 | Msa1235400 | 0.882630 | 8.867333e-71 | -8.615850e-47 |
| Msa0038020 | Msa1241800 | 0.803874 | 2.830807e-49 | -8.615850e-47 |
| Msa0038020 | Msa1258370 | 0.838193 | 3.326682e-57 | -8.615850e-47 |
| Msa0038020 | Msa1272320 | 0.819021 | 1.445177e-52 | -8.615850e-47 |
| Msa0038020 | Msa1272520 | 0.803902 | 2.792546e-49 | -8.615850e-47 |
| Msa0038020 | Msa1276510 | 0.842176 | 3.033624e-58 | -8.615850e-47 |
| Msa0038020 | Msa1307740 | 0.819890 | 9.155301e-53 | -8.615850e-47 |
| Msa0038020 | Msa1314770 | 0.873500 | 1.401236e-67 | -8.615850e-47 |
| Msa0038020 | Msa1350690 | 0.845421 | 4.104374e-59 | -8.615850e-47 |
| Msa0038020 | Msa1350720 | 0.834141 | 3.558394e-56 | -8.615850e-47 |
| Msa0038020 | Msa1360240 | 0.843929 | 1.035289e-58 | -8.615850e-47 |
| Msa0038020 | Msa1360280 | 0.823050 | 1.706764e-53 | -8.615850e-47 |
| Msa0038020 | Msa1364370 | 0.800916 | 1.151380e-48 | -8.615850e-47 |
| Msa0038020 | Msa1373350 | 0.819034 | 1.435676e-52 | -8.615850e-47 |
| Msa0038020 | Msa1375700 | -0.805983 | 1.025627e-49 | -8.615850e-47 |
| Msa0038020 | Msa1400070 | 0.835254 | 1.867318e-56 | -8.615850e-47 |
| Msa0038020 | Msa1404240 | -0.803250 | 3.812703e-49 | -8.615850e-47 |
| Msa0038020 | Msa1407650 | 0.811173 | 7.990578e-51 | -8.615850e-47 |
| Msa0038020 | Msa1417810 | -0.811411 | 7.094536e-51 | -8.615850e-47 |
| Msa0038020 | Msa1422840 | 0.813654 | 2.293999e-51 | -8.615850e-47 |
| Msa0038020 | Msa1426570 | 0.802267 | 6.085364e-49 | -8.615850e-47 |
| Msa0038020 | Msa1435400 | 0.837104 | 6.327166e-57 | -8.615850e-47 |
| Msa0038020 | Msa1445220 | 0.834468 | 2.945146e-56 | -8.615850e-47 |
| Msa0038020 | Msa1445400 | -0.813056 | 3.104379e-51 | -8.615850e-47 |
| Msa0038020 | Msa1449350 | -0.816262 | 6.056026e-52 | -8.615850e-47 |
| Msa0038020 | Msa1459760 | -0.811092 | 8.323882e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0038020 | MtrunA17_Chr1g0201341 | 86.500 | 400 | 12 | 2 | 1 | 394 | 1 | 364 | 0.0 | 706 |
| Msa0038020 | MtrunA17_Chr6g0466631 | 68.783 | 378 | 76 | 2 | 1 | 372 | 1 | 342 | 0.0 | 539 |
| Msa0038020 | MtrunA17_Chr3g0081621 | 56.140 | 399 | 131 | 4 | 2 | 394 | 113 | 473 | 1.59e-159 | 458 |
| Msa0038020 | MtrunA17_Chr8g0354091 | 56.303 | 357 | 118 | 3 | 16 | 372 | 36 | 354 | 9.75e-147 | 421 |
| Msa0038020 | MtrunA17_Chr2g0307011 | 30.278 | 360 | 186 | 8 | 27 | 372 | 57 | 365 | 7.52e-42 | 151 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0038020 | AT1G74320.1 | 57.534 | 365 | 112 | 3 | 17 | 375 | 20 | 347 | 8.24e-154 | 438 |
| Msa0038020 | AT1G71697.1 | 54.974 | 382 | 128 | 4 | 1 | 374 | 1 | 346 | 2.01e-150 | 429 |
| Msa0038020 | AT4G09760.1 | 55.145 | 379 | 125 | 5 | 1 | 372 | 1 | 341 | 1.01e-149 | 427 |
| Msa0038020 | AT4G09760.2 | 55.145 | 379 | 125 | 5 | 1 | 372 | 1 | 341 | 1.01e-149 | 427 |
| Msa0038020 | AT4G09760.3 | 47.893 | 261 | 91 | 5 | 1 | 254 | 1 | 223 | 2.60e-76 | 237 |
| Msa0038020 | AT4G09760.4 | 46.341 | 246 | 87 | 5 | 1 | 239 | 1 | 208 | 6.43e-68 | 214 |
| Msa0038020 | AT2G26830.1 | 28.919 | 370 | 193 | 10 | 18 | 369 | 43 | 360 | 1.72e-42 | 153 |
Find 111 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATAATTCAATTGTCTTTA+TGG | 0.034762 | 1_1:+67255946 | None:intergenic |
| ACCATATATTCTGGGGCTTA+TGG | 0.170812 | 1_1:-67252772 | Msa0038020:CDS |
| GTTAAGGAAGCCTACTTTAT+TGG | 0.174086 | 1_1:-67252580 | Msa0038020:CDS |
| ACTGCGGTGGCTTCGGATTT+AGG | 0.182122 | 1_1:-67255884 | Msa0038020:CDS |
| GCTCATCAACCTTCCACTTT+TGG | 0.232131 | 1_1:-67252330 | Msa0038020:three_prime_UTR |
| TAAGCCCTCTTAGAGGAAAT+TGG | 0.249578 | 1_1:-67254812 | Msa0038020:intron |
| GCCAAATCAAACGGAAATTC+TGG | 0.252319 | 1_1:-67256005 | Msa0038020:five_prime_UTR |
| TTTAATTCATTGAATCAAAA+TGG | 0.260999 | 1_1:-67255969 | Msa0038020:exon |
| TGCATCCCAAGAAGAATTAA+TGG | 0.261372 | 1_1:-67255915 | Msa0038020:CDS |
| CCATATATTCTGGGGCTTAT+GGG | 0.262925 | 1_1:-67252771 | Msa0038020:CDS |
| CTCGACTCTGTTTCTTCTTC+GGG | 0.267579 | 1_1:-67256416 | Msa0038020:intron |
| AGTCTTATGAATGATAAATT+AGG | 0.274268 | 1_1:-67252245 | Msa0038020:three_prime_UTR |
| TTACTTCCATTAATTCTTCT+TGG | 0.282291 | 1_1:+67255909 | None:intergenic |
| GGCAGAGGTTTCAGCAATAT+TGG | 0.288043 | 1_1:-67252602 | Msa0038020:CDS |
| ACTCGACTCTGTTTCTTCTT+CGG | 0.289865 | 1_1:-67256417 | Msa0038020:five_prime_UTR |
| TGTCTTAGTGAAGTTAGTTT+TGG | 0.292001 | 1_1:-67252470 | Msa0038020:three_prime_UTR |
| CCGTTTAAAGTGCGTATATT+TGG | 0.299170 | 1_1:+67256596 | None:intergenic |
| ACCAGAATTTCCGTTTGATT+TGG | 0.301440 | 1_1:+67256004 | None:intergenic |
| GGGCTTATGGGGACTTATTT+CGG | 0.306924 | 1_1:-67252759 | Msa0038020:intron |
| CCCATAAGCCCCAGAATATA+TGG | 0.317567 | 1_1:+67252771 | None:intergenic |
| CTCTCGCAAACCATATATTC+TGG | 0.321780 | 1_1:-67252781 | Msa0038020:CDS |
| TGCCACAATGACCTACAATA+TGG | 0.321926 | 1_1:-67253390 | Msa0038020:CDS |
| AGATGATGAAATAAATATTC+TGG | 0.330658 | 1_1:-67253451 | Msa0038020:CDS |
| AAGGTTCTGGTTCGTTTATA+TGG | 0.332124 | 1_1:-67255752 | Msa0038020:CDS |
| TGCCAGGCATATGAAGCTTA+TGG | 0.344971 | 1_1:+67253663 | None:intergenic |
| CAGCGAACCGTTCACAGTTT+CGG | 0.346273 | 1_1:+67252533 | None:intergenic |
| AGTGAATCAATACATATAAA+AGG | 0.356442 | 1_1:+67252211 | None:intergenic |
| GCACAAAGAAGGCTCATATT+TGG | 0.357584 | 1_1:-67253643 | Msa0038020:CDS |
| TGACTCTGAAATATCATCTT+TGG | 0.359929 | 1_1:-67253708 | Msa0038020:CDS |
| AGTAATTACTGCGGTGGCTT+CGG | 0.364014 | 1_1:-67255891 | Msa0038020:CDS |
| GGCAAATCATTTCTGTGAAA+TGG | 0.366684 | 1_1:-67253197 | Msa0038020:CDS |
| TACTTCCATTAATTCTTCTT+GGG | 0.366751 | 1_1:+67255910 | None:intergenic |
| AACCGTTCACAGTTTCGGTT+TGG | 0.369826 | 1_1:+67252538 | None:intergenic |
| CCAAATATACGCACTTTAAA+CGG | 0.377122 | 1_1:-67256596 | Msa0038020:five_prime_UTR |
| TTGATTTGGCAATAAAATAG+TGG | 0.381171 | 1_1:+67256018 | None:intergenic |
| ACCGTTCACAGTTTCGGTTT+GGG | 0.382302 | 1_1:+67252539 | None:intergenic |
| CTTCTTGCTCGTTTCACTAC+TGG | 0.401801 | 1_1:-67255647 | Msa0038020:CDS |
| AAACAGAGTCGAGTTGAATA+AGG | 0.406865 | 1_1:+67256426 | None:intergenic |
| TTGGTCATTGCACCTTTCAA+TGG | 0.406927 | 1_1:+67255824 | None:intergenic |
| TGTGAAGGATATCAAGAGAT+TGG | 0.415057 | 1_1:-67253417 | Msa0038020:CDS |
| TGGTGATTTGAGGAAGGTTC+TGG | 0.417603 | 1_1:-67255765 | Msa0038020:CDS |
| TCATAATGTTACCATATTGT+AGG | 0.424013 | 1_1:+67253379 | None:intergenic |
| GGTTTCAGCAATATTGGTTA+AGG | 0.427253 | 1_1:-67252596 | Msa0038020:CDS |
| AATAAGGTGGTTAAGTGATA+AGG | 0.447436 | 1_1:+67256442 | None:intergenic |
| TTTGGCTTTCTAGACTCTCT+CGG | 0.457270 | 1_1:-67253744 | Msa0038020:intron |
| TTGAATGCGTGTATCTCTGC+AGG | 0.457561 | 1_1:+67254763 | None:intergenic |
| TGTATATATAGAGAGAGAAT+TGG | 0.457900 | 1_1:+67256527 | None:intergenic |
| TGATTCACCTTAGCATTGCT+TGG | 0.458377 | 1_1:+67252830 | None:intergenic |
| GGGATTGTTGATAATGAGAA+TGG | 0.462912 | 1_1:-67252309 | Msa0038020:three_prime_UTR |
| ATATGAGCCTTCTTTGTGCC+AGG | 0.463313 | 1_1:+67253647 | None:intergenic |
| TCTCGCAAACCATATATTCT+GGG | 0.466032 | 1_1:-67252780 | Msa0038020:CDS |
| ATTATCAACAATCCCAAAAG+TGG | 0.467941 | 1_1:+67252317 | None:intergenic |
| CATATATTCTGGGGCTTATG+GGG | 0.475167 | 1_1:-67252770 | Msa0038020:CDS |
| GAACATGAGGTGTATCACTA+TGG | 0.476295 | 1_1:+67253164 | None:intergenic |
| GTGTATCTCTGCAGGGGAGC+CGG | 0.489448 | 1_1:+67254771 | None:intergenic |
| TTCCATAAGCTTCATATGCC+TGG | 0.491466 | 1_1:-67253665 | Msa0038020:CDS |
| CTGGTTCGTTTATATGGTGA+AGG | 0.494682 | 1_1:-67255746 | Msa0038020:CDS |
| TTTCACAGAAATGATTTGCC+AGG | 0.500589 | 1_1:+67253200 | None:intergenic |
| TCTATTATAATAACAGCTAA+AGG | 0.504163 | 1_1:-67252435 | Msa0038020:three_prime_UTR |
| ACAATATGGTAACATTATGA+TGG | 0.504904 | 1_1:-67253376 | Msa0038020:CDS |
| GAGCAAGAAGGCGTGGACCT+TGG | 0.507822 | 1_1:+67255660 | None:intergenic |
| CTCATATTTGGCAGAGAATG+AGG | 0.510591 | 1_1:-67253631 | Msa0038020:intron |
| CAGAACTCGAGGAGCGTCAA+AGG | 0.515090 | 1_1:-67253004 | Msa0038020:CDS |
| TCATATGCCTGGCACAAAGA+AGG | 0.515429 | 1_1:-67253654 | Msa0038020:CDS |
| CGTGTCTATCTCAGTTCTGA+AGG | 0.521286 | 1_1:-67252975 | Msa0038020:intron |
| TGAAATAAATATTCTGGAGA+AGG | 0.522645 | 1_1:-67253445 | Msa0038020:CDS |
| GTTGATGAGTCCAATAAAGT+AGG | 0.531218 | 1_1:+67252570 | None:intergenic |
| AAGACAATTGAATTATTGAA+AGG | 0.536432 | 1_1:-67255941 | Msa0038020:CDS |
| CTTGACTACAGTAAATATCC+TGG | 0.536643 | 1_1:-67253142 | Msa0038020:intron |
| CTCTGAAATATCATCTTTGG+TGG | 0.538937 | 1_1:-67253705 | Msa0038020:CDS |
| GATTCCCGCAGTCAAGGATC+CGG | 0.540987 | 1_1:-67254790 | Msa0038020:CDS |
| TTGCAAGTGATTCCATTGAA+AGG | 0.546711 | 1_1:-67255836 | Msa0038020:CDS |
| ACAAAGAATATGCAAGGCAG+AGG | 0.550525 | 1_1:-67252617 | Msa0038020:CDS |
| GGAGCCGGATCCTTGACTGC+GGG | 0.554079 | 1_1:+67254786 | None:intergenic |
| GGATTGTTGATAATGAGAAT+GGG | 0.557573 | 1_1:-67252308 | Msa0038020:three_prime_UTR |
| TTGATTACAAAGAATATGCA+AGG | 0.569982 | 1_1:-67252623 | Msa0038020:CDS |
| AAATTGGATTCCCGCAGTCA+AGG | 0.570798 | 1_1:-67254796 | Msa0038020:CDS |
| CTGGAGAAGGAGTTGTGTGA+AGG | 0.572508 | 1_1:-67253432 | Msa0038020:CDS |
| AGTTTCGGTTTGGGCAACAA+TGG | 0.574842 | 1_1:+67252548 | None:intergenic |
| AATGGAAGTAATTACTGCGG+TGG | 0.576381 | 1_1:-67255897 | Msa0038020:CDS |
| CAAGAAACCAAGCAATGCTA+AGG | 0.579970 | 1_1:-67252837 | Msa0038020:CDS |
| AAATGATGGTGATTTGAGGA+AGG | 0.580359 | 1_1:-67255771 | Msa0038020:CDS |
| TGAATGCGTGTATCTCTGCA+GGG | 0.581050 | 1_1:+67254764 | None:intergenic |
| CAATCCTATCGCATATGACC+TGG | 0.584037 | 1_1:-67253218 | Msa0038020:CDS |
| CGTGGTCGTTCGATCAAGAT+CGG | 0.589761 | 1_1:-67254734 | Msa0038020:CDS |
| TTTGCCAGGTCATATGCGAT+AGG | 0.595086 | 1_1:+67253214 | None:intergenic |
| TTTCACTACTGGTAGAGTTG+AGG | 0.595164 | 1_1:-67255636 | Msa0038020:CDS |
| TACCATATTGTAGGTCATTG+TGG | 0.595534 | 1_1:+67253388 | None:intergenic |
| GTGAAACGAGCAAGAAGGCG+TGG | 0.597624 | 1_1:+67255653 | None:intergenic |
| CAAAGTGTTCACATCATCGA+TGG | 0.599429 | 1_1:+67255856 | None:intergenic |
| TGTATCTCAAAGCATGGCCA+AGG | 0.610665 | 1_1:-67255677 | Msa0038020:CDS |
| GGACGGTCAAGATTCAAGCT+TGG | 0.611942 | 1_1:-67254713 | Msa0038020:intron |
| TCAACAATCCCAAAAGTGGA+AGG | 0.612132 | 1_1:+67252321 | None:intergenic |
| GAAAAGTTTGTGCTCCCCAA+AGG | 0.617608 | 1_1:-67253501 | Msa0038020:CDS |
| CAGTAGTGAAACGAGCAAGA+AGG | 0.618606 | 1_1:+67255648 | None:intergenic |
| TTTGAGTGTATCTCAAAGCA+TGG | 0.621729 | 1_1:-67255683 | Msa0038020:CDS |
| GTCGTTCGATCAAGATCGGA+CGG | 0.623305 | 1_1:-67254730 | Msa0038020:CDS |
| GCCCAAACCGAAACTGTGAA+CGG | 0.623493 | 1_1:-67252540 | Msa0038020:CDS |
| AAGATGATATTTCAGAGTCA+CGG | 0.624385 | 1_1:+67253711 | None:intergenic |
| CAGAGTCGAGTTGAATAAGG+TGG | 0.627506 | 1_1:+67256429 | None:intergenic |
| ATGCTTTGAGATACACTCAA+AGG | 0.634081 | 1_1:+67255685 | None:intergenic |
| GGGAGCCGGATCCTTGACTG+CGG | 0.635491 | 1_1:+67254785 | None:intergenic |
| CTCGCAAACCATATATTCTG+GGG | 0.653675 | 1_1:-67252779 | Msa0038020:CDS |
| TAAGGTGAATCAGTTAATGA+CGG | 0.658131 | 1_1:-67252819 | Msa0038020:CDS |
| TTACTGTAGTCAAGAACATG+AGG | 0.664678 | 1_1:+67253151 | None:intergenic |
| GAATGCGTGTATCTCTGCAG+GGG | 0.667130 | 1_1:+67254765 | None:intergenic |
| ATATGATGAACCAGAACTCG+AGG | 0.670863 | 1_1:-67253015 | Msa0038020:intron |
| CGATCTTGATCGAACGACCA+CGG | 0.671964 | 1_1:+67254735 | None:intergenic |
| AATCACACACATGATGCTAG+TGG | 0.675552 | 1_1:+67252510 | None:intergenic |
| ATTAATGGAAGTAATTACTG+CGG | 0.713521 | 1_1:-67255900 | Msa0038020:CDS |
| ACACGCATTCAAGACATCCG+TGG | 0.720128 | 1_1:-67254752 | Msa0038020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTTTTTAAATAAAA+TGG | + | chr1_1:67255205-67255224 | None:intergenic | 0.0% |
| !! | AGAAAATAAAAAATTGAATT+GGG | + | chr1_1:67252588-67252607 | None:intergenic | 10.0% |
| !! | TAGAAAATAAAAAATTGAAT+TGG | + | chr1_1:67252589-67252608 | None:intergenic | 10.0% |
| !! | ACATAATATAGATATAAAAA+AGG | + | chr1_1:67253206-67253225 | None:intergenic | 10.0% |
| !!! | TTTATATCTATATTATGTTT+TGG | - | chr1_1:67253208-67253227 | Msa0038020:CDS | 10.0% |
| !!! | CACTATTATTTTTATTAAAA+TGG | + | chr1_1:67253384-67253403 | None:intergenic | 10.0% |
| !! | AAAATATTCAATAGAAAATA+AGG | - | chr1_1:67253873-67253892 | Msa0038020:intron | 10.0% |
| !!! | TTAAATTTCTTTTTTAAAGA+TGG | + | chr1_1:67254511-67254530 | None:intergenic | 10.0% |
| !!! | TCTTTAAAAAAGAAATTTAA+TGG | - | chr1_1:67254511-67254530 | Msa0038020:intron | 10.0% |
| !! | TAATAGAACTAAATAATTTA+TGG | - | chr1_1:67254781-67254800 | Msa0038020:CDS | 10.0% |
| !! | AAGTATATAACTATATATTA+TGG | - | chr1_1:67256081-67256100 | Msa0038020:intron | 10.0% |
| !! | AGTATATAACTATATATTAT+GGG | - | chr1_1:67256082-67256101 | Msa0038020:intron | 10.0% |
| !! | TTGAGAAAAATAAAAAAACA+GGG | + | chr1_1:67252536-67252555 | None:intergenic | 15.0% |
| !! | TTTGAGAAAAATAAAAAAAC+AGG | + | chr1_1:67252537-67252556 | None:intergenic | 15.0% |
| !!! | AATTTTTTTATAACCCAATT+TGG | + | chr1_1:67252654-67252673 | None:intergenic | 15.0% |
| !! | TTTAATTCATTGAATCAAAA+TGG | - | chr1_1:67252813-67252832 | Msa0038020:CDS | 15.0% |
| !! | ATATTATCTTGCAAAATAAA+GGG | - | chr1_1:67254281-67254300 | Msa0038020:intron | 15.0% |
| !! | AAAAAAGAAATTTAATGGAA+CGG | - | chr1_1:67254516-67254535 | Msa0038020:intron | 15.0% |
| !!! | TTCAATTGATTTTAATTCTT+TGG | + | chr1_1:67254922-67254941 | None:intergenic | 15.0% |
| !! | ATATCAATAAAAACAAAAAC+AGG | + | chr1_1:67255715-67255734 | None:intergenic | 15.0% |
| !!! | TAAGAAGTATATTTGATATT+CGG | + | chr1_1:67255887-67255906 | None:intergenic | 15.0% |
| !!! | TTTTTGATGATTTTTTCAAC+TGG | - | chr1_1:67252447-67252466 | Msa0038020:three_prime_UTR | 20.0% |
| !!! | TTTTGATGATTTTTTCAACT+GGG | - | chr1_1:67252448-67252467 | Msa0038020:three_prime_UTR | 20.0% |
| !! | TGAGAAAAATAAAAAAACAG+GGG | + | chr1_1:67252535-67252554 | None:intergenic | 20.0% |
| !!! | TTTTGATATCTTTTCCAAAT+TGG | - | chr1_1:67252637-67252656 | Msa0038020:CDS | 20.0% |
| !!! | TTTGATATCTTTTCCAAATT+GGG | - | chr1_1:67252638-67252657 | Msa0038020:CDS | 20.0% |
| !!! | TATTTTATTGCCAAATCAAA+CGG | - | chr1_1:67252768-67252787 | Msa0038020:CDS | 20.0% |
| !! | CAATAATTCAATTGTCTTTA+TGG | + | chr1_1:67252839-67252858 | None:intergenic | 20.0% |
| !! | AAGACAATTGAATTATTGAA+AGG | - | chr1_1:67252841-67252860 | Msa0038020:CDS | 20.0% |
| !! | ATTTATCTGAAAAACTTCAT+TGG | + | chr1_1:67252980-67252999 | None:intergenic | 20.0% |
| !!! | ATGAAGTTTTTCAGATAAAT+TGG | - | chr1_1:67252980-67252999 | Msa0038020:CDS | 20.0% |
| !!! | TGTTGAAATTTTCTTCAATA+GGG | - | chr1_1:67253059-67253078 | Msa0038020:intron | 20.0% |
| !!! | TAATTTGTAGAACTAAAAAG+TGG | - | chr1_1:67253329-67253348 | Msa0038020:intron | 20.0% |
| !!! | CTTCTTAACTTGTAAAATTA+AGG | + | chr1_1:67253437-67253456 | None:intergenic | 20.0% |
| !!! | ATTTTACAAGTTAAGAAGTT+AGG | - | chr1_1:67253439-67253458 | Msa0038020:CDS | 20.0% |
| !!! | AAAATCAATTTTGTTGCAAT+TGG | - | chr1_1:67253621-67253640 | Msa0038020:intron | 20.0% |
| !! | TTGAATAGAATAAACCAAAT+AGG | + | chr1_1:67253665-67253684 | None:intergenic | 20.0% |
| !! | ACAAAGCAGTAAAATATAAT+TGG | + | chr1_1:67253700-67253719 | None:intergenic | 20.0% |
| !!! | TATTTTCTAAATTTACTTGC+AGG | + | chr1_1:67253830-67253849 | None:intergenic | 20.0% |
| !! | TATTCAATAGAAAATAAGGT+AGG | - | chr1_1:67253877-67253896 | Msa0038020:intron | 20.0% |
| !! | ACTAAACTAAACTAACTTAT+AGG | + | chr1_1:67253906-67253925 | None:intergenic | 20.0% |
| !! | TATATAAAGTAGATCAAGAT+CGG | + | chr1_1:67254244-67254263 | None:intergenic | 20.0% |
| !! | CATATTATCTTGCAAAATAA+AGG | - | chr1_1:67254280-67254299 | Msa0038020:intron | 20.0% |
| !! | AGATAAAGGGAATAAATTAA+GGG | + | chr1_1:67254420-67254439 | None:intergenic | 20.0% |
| !! | AAGATAAAGGGAATAAATTA+AGG | + | chr1_1:67254421-67254440 | None:intergenic | 20.0% |
| !!! | AATTTATTCCCTTTATCTTT+TGG | - | chr1_1:67254422-67254441 | Msa0038020:intron | 20.0% |
| !! | AGAATAAATAACATGAAGAA+AGG | + | chr1_1:67254609-67254628 | None:intergenic | 20.0% |
| !! | GCATGTTTCTTTATTATTAT+TGG | + | chr1_1:67254633-67254652 | None:intergenic | 20.0% |
| !!! | TAAACAGTATGTTTTTTGAA+AGG | - | chr1_1:67254663-67254682 | Msa0038020:intron | 20.0% |
| !! | TAAATGTTCATTAGTAAACT+TGG | - | chr1_1:67254758-67254777 | Msa0038020:CDS | 20.0% |
| !! | CTAAATAATTTATGGAACTA+AGG | - | chr1_1:67254789-67254808 | Msa0038020:CDS | 20.0% |
| !! | AGATGATGAAATAAATATTC+TGG | - | chr1_1:67255331-67255350 | Msa0038020:intron | 20.0% |
| !!! | CATAAGTAACTATCATATTT+TGG | + | chr1_1:67255494-67255513 | None:intergenic | 20.0% |
| !!! | CTCTAATTTTATTTTGATAC+AGG | - | chr1_1:67255522-67255541 | Msa0038020:intron | 20.0% |
| !! | TCTATTATAATAACAGCTAA+AGG | - | chr1_1:67256347-67256366 | Msa0038020:intron | 20.0% |
| !!! | AGTCTTATGAATGATAAATT+AGG | - | chr1_1:67256537-67256556 | Msa0038020:five_prime_UTR | 20.0% |
| !! | AGTGAATCAATACATATAAA+AGG | + | chr1_1:67256574-67256593 | None:intergenic | 20.0% |
| ! | TGTATATATAGAGAGAGAAT+TGG | + | chr1_1:67252258-67252277 | None:intergenic | 25.0% |
| ! | TCTTTGCATTAACTAATTCT+TGG | - | chr1_1:67252412-67252431 | Msa0038020:three_prime_UTR | 25.0% |
| ! | CTATTGCAATGAAATTATGT+GGG | + | chr1_1:67252496-67252515 | None:intergenic | 25.0% |
| ! | ATTTATTTGTGCATGCAATA+AGG | - | chr1_1:67252685-67252704 | Msa0038020:intron | 25.0% |
| ! | TTTATTTGTGCATGCAATAA+GGG | - | chr1_1:67252686-67252705 | Msa0038020:intron | 25.0% |
| !!! | TTGATTTGGCAATAAAATAG+TGG | + | chr1_1:67252767-67252786 | None:intergenic | 25.0% |
| ! | TACTTCCATTAATTCTTCTT+GGG | + | chr1_1:67252875-67252894 | None:intergenic | 25.0% |
| ! | TTACTTCCATTAATTCTTCT+TGG | + | chr1_1:67252876-67252895 | None:intergenic | 25.0% |
| ! | ATTAATGGAAGTAATTACTG+CGG | - | chr1_1:67252882-67252901 | Msa0038020:intron | 25.0% |
| !!! | AAATCACCATCATTTTTTGT+TGG | + | chr1_1:67253006-67253025 | None:intergenic | 25.0% |
| !! | GTGTTGAAATTTTCTTCAAT+AGG | - | chr1_1:67253058-67253077 | Msa0038020:intron | 25.0% |
| !!! | TTTTTTGCATCATGAAACTA+TGG | - | chr1_1:67253518-67253537 | Msa0038020:intron | 25.0% |
| !!! | TTTGATTGTTTTGAGAAGAT+AGG | - | chr1_1:67253555-67253574 | Msa0038020:intron | 25.0% |
| ! | TTGACATATAAGAACCTATT+TGG | - | chr1_1:67253648-67253667 | Msa0038020:CDS | 25.0% |
| ! | GCAAGATAATATGTTATGAT+GGG | + | chr1_1:67254273-67254292 | None:intergenic | 25.0% |
| ! | TGCAAGATAATATGTTATGA+TGG | + | chr1_1:67254274-67254293 | None:intergenic | 25.0% |
| ! | TGATCTCAAAAGCTAAAATA+TGG | + | chr1_1:67254325-67254344 | None:intergenic | 25.0% |
| ! | TAACATGAAGAAAGGAATAT+GGG | + | chr1_1:67254601-67254620 | None:intergenic | 25.0% |
| ! | ATAACATGAAGAAAGGAATA+TGG | + | chr1_1:67254602-67254621 | None:intergenic | 25.0% |
| !!! | GTATGTTTTTTGAAAGGTAT+CGG | - | chr1_1:67254669-67254688 | Msa0038020:intron | 25.0% |
| ! | TATGTATGCATAGAAAGATA+AGG | - | chr1_1:67254702-67254721 | Msa0038020:intron | 25.0% |
| !! | TGAAATAAATATTCTGGAGA+AGG | - | chr1_1:67255337-67255356 | Msa0038020:intron | 25.0% |
| ! | TCATAATGTTACCATATTGT+AGG | + | chr1_1:67255406-67255425 | None:intergenic | 25.0% |
| ! | ACAATATGGTAACATTATGA+TGG | - | chr1_1:67255406-67255425 | Msa0038020:intron | 25.0% |
| !!! | GTAACTATCATATTTTGGAA+AGG | + | chr1_1:67255489-67255508 | None:intergenic | 25.0% |
| ! | CTAAGAACAAAAAATTTACC+AGG | + | chr1_1:67255661-67255680 | None:intergenic | 25.0% |
| ! | TACAAATTAATATGTCAGCA+AGG | + | chr1_1:67255748-67255767 | None:intergenic | 25.0% |
| ! | TTGATTACAAAGAATATGCA+AGG | - | chr1_1:67256159-67256178 | Msa0038020:intron | 25.0% |
| !! | TTTTCTTTGTAATGAAGTCT+TGG | - | chr1_1:67256509-67256528 | Msa0038020:five_prime_UTR | 25.0% |
| CCAAATATACGCACTTTAAA+CGG | - | chr1_1:67252186-67252205 | Msa0038020:three_prime_UTR | 30.0% | |
| AATAAGGTGGTTAAGTGATA+AGG | + | chr1_1:67252343-67252362 | None:intergenic | 30.0% | |
| CCTATTGCAATGAAATTATG+TGG | + | chr1_1:67252497-67252516 | None:intergenic | 30.0% | |
| CCACATAATTTCATTGCAAT+AGG | - | chr1_1:67252494-67252513 | Msa0038020:exon | 30.0% | |
| ! | TCTGAAACAGAGTAAAAACA+GGG | + | chr1_1:67252742-67252761 | None:intergenic | 30.0% |
| ! | ATCTGAAACAGAGTAAAAAC+AGG | + | chr1_1:67252743-67252762 | None:intergenic | 30.0% |
| AATTGGCCAACAAAAAATGA+TGG | - | chr1_1:67252997-67253016 | Msa0038020:CDS | 30.0% | |
| ! | CAAAAAATGATGGTGATTTG+AGG | - | chr1_1:67253007-67253026 | Msa0038020:intron | 30.0% |
| ! | GTCAAGACAAGTTCTTTTAT+TGG | - | chr1_1:67253936-67253955 | Msa0038020:intron | 30.0% |
| ! | AGACAAGTTCTTTTATTGGT+AGG | - | chr1_1:67253940-67253959 | Msa0038020:intron | 30.0% |
| TTTGTCTTTCCAATCAGAAT+CGG | - | chr1_1:67254125-67254144 | Msa0038020:intron | 30.0% | |
| GAAAAATTTCTTGCAGTGAA+TGG | - | chr1_1:67254189-67254208 | Msa0038020:intron | 30.0% | |
| AGGGAATAAATTAAGGGAAA+AGG | + | chr1_1:67254414-67254433 | None:intergenic | 30.0% | |
| ACAAAAAGGAACACATTAAC+AGG | + | chr1_1:67254873-67254892 | None:intergenic | 30.0% | |
| ! | GAAAGAGTTTTACCAATACA+AGG | - | chr1_1:67254939-67254958 | Msa0038020:intron | 30.0% |
| CAAATTCATCATCCTTGTAT+TGG | + | chr1_1:67254954-67254973 | None:intergenic | 30.0% | |
| AAGATGATATTTCAGAGTCA+CGG | + | chr1_1:67255074-67255093 | None:intergenic | 30.0% | |
| !! | TGACTCTGAAATATCATCTT+TGG | - | chr1_1:67255074-67255093 | Msa0038020:intron | 30.0% |
| ! | TGTTTTCCATGTGTTTTACT+AGG | - | chr1_1:67255241-67255260 | Msa0038020:intron | 30.0% |
| !!! | CGAATTTTTTGTTTCCTTTG+GGG | + | chr1_1:67255298-67255317 | None:intergenic | 30.0% |
| !!! | CCGAATTTTTTGTTTCCTTT+GGG | + | chr1_1:67255299-67255318 | None:intergenic | 30.0% |
| CCCAAAGGAAACAAAAAATT+CGG | - | chr1_1:67255296-67255315 | Msa0038020:intron | 30.0% | |
| CCAAAGGAAACAAAAAATTC+GGG | - | chr1_1:67255297-67255316 | Msa0038020:intron | 30.0% | |
| TCACACTAATTGTAAGCTAA+TGG | - | chr1_1:67255447-67255466 | Msa0038020:intron | 30.0% | |
| TAAGGTGAATCAGTTAATGA+CGG | - | chr1_1:67255963-67255982 | Msa0038020:exon | 30.0% | |
| !! | TGTCTTAGTGAAGTTAGTTT+TGG | - | chr1_1:67256312-67256331 | Msa0038020:intron | 30.0% |
| ATTATCAACAATCCCAAAAG+TGG | + | chr1_1:67256468-67256487 | None:intergenic | 30.0% | |
| !! | GGATTGTTGATAATGAGAAT+GGG | - | chr1_1:67256474-67256493 | Msa0038020:five_prime_UTR | 30.0% |
| ! | CCGTTTAAAGTGCGTATATT+TGG | + | chr1_1:67252189-67252208 | None:intergenic | 35.0% |
| !! | AAACAGAGTCGAGTTGAATA+AGG | + | chr1_1:67252359-67252378 | None:intergenic | 35.0% |
| CTGAAACAGAGTAAAAACAG+GGG | + | chr1_1:67252741-67252760 | None:intergenic | 35.0% | |
| ACCAGAATTTCCGTTTGATT+TGG | + | chr1_1:67252781-67252800 | None:intergenic | 35.0% | |
| TGCATCCCAAGAAGAATTAA+TGG | - | chr1_1:67252867-67252886 | Msa0038020:intron | 35.0% | |
| TTGCAAGTGATTCCATTGAA+AGG | - | chr1_1:67252946-67252965 | Msa0038020:intron | 35.0% | |
| ! | AAATGATGGTGATTTGAGGA+AGG | - | chr1_1:67253011-67253030 | Msa0038020:intron | 35.0% |
| !! | AAGGTTCTGGTTCGTTTATA+TGG | - | chr1_1:67253030-67253049 | Msa0038020:intron | 35.0% |
| !! | ATGCTTTGAGATACACTCAA+AGG | + | chr1_1:67253100-67253119 | None:intergenic | 35.0% |
| TTTGAGTGTATCTCAAAGCA+TGG | - | chr1_1:67253099-67253118 | Msa0038020:intron | 35.0% | |
| ! | GAATCCAATTTCCTCTAAGA+GGG | + | chr1_1:67253977-67253996 | None:intergenic | 35.0% |
| GTTAATGAGAACACCTATTC+AGG | + | chr1_1:67254165-67254184 | None:intergenic | 35.0% | |
| TAAAGTAGATCAAGATCGGA+CGG | + | chr1_1:67254240-67254259 | None:intergenic | 35.0% | |
| CCATTGCTCCAAAAGATAAA+GGG | + | chr1_1:67254433-67254452 | None:intergenic | 35.0% | |
| TCCATTGCTCCAAAAGATAA+AGG | + | chr1_1:67254434-67254453 | None:intergenic | 35.0% | |
| !!! | TTTATCTTTTGGAGCAATGG+AGG | - | chr1_1:67254433-67254452 | Msa0038020:intron | 35.0% |
| !!! | TTATCTTTTGGAGCAATGGA+GGG | - | chr1_1:67254434-67254453 | Msa0038020:intron | 35.0% |
| !! | TTTGCCTCTTTTGGTTGTTT+TGG | - | chr1_1:67254463-67254482 | Msa0038020:intron | 35.0% |
| TACTCCAAAACAACCAAAAG+AGG | + | chr1_1:67254470-67254489 | None:intergenic | 35.0% | |
| AGGAATATGGGCAAAAAGAA+TGG | + | chr1_1:67254589-67254608 | None:intergenic | 35.0% | |
| TCAGTTAACAACTAGTATGC+TGG | + | chr1_1:67254844-67254863 | None:intergenic | 35.0% | |
| GACATCAACAACAGACAAAA+AGG | + | chr1_1:67254887-67254906 | None:intergenic | 35.0% | |
| !! | CTCTGAAATATCATCTTTGG+TGG | - | chr1_1:67255077-67255096 | Msa0038020:intron | 35.0% |
| ! | CATGTGTTTTACTAGGAACT+GGG | - | chr1_1:67255248-67255267 | Msa0038020:intron | 35.0% |
| !!! | CCCGAATTTTTTGTTTCCTT+TGG | + | chr1_1:67255300-67255319 | None:intergenic | 35.0% |
| TGTGAAGGATATCAAGAGAT+TGG | - | chr1_1:67255365-67255384 | Msa0038020:intron | 35.0% | |
| TACCATATTGTAGGTCATTG+TGG | + | chr1_1:67255397-67255416 | None:intergenic | 35.0% | |
| ! | TTTCACAGAAATGATTTGCC+AGG | + | chr1_1:67255585-67255604 | None:intergenic | 35.0% |
| GGCAAATCATTTCTGTGAAA+TGG | - | chr1_1:67255585-67255604 | Msa0038020:intron | 35.0% | |
| TTACTGTAGTCAAGAACATG+AGG | + | chr1_1:67255634-67255653 | None:intergenic | 35.0% | |
| CTTGACTACAGTAAATATCC+TGG | - | chr1_1:67255640-67255659 | Msa0038020:CDS | 35.0% | |
| GGAACACACAATAATCATTG+TGG | + | chr1_1:67255694-67255713 | None:intergenic | 35.0% | |
| CGACAGAGTGAAATTCATAA+TGG | + | chr1_1:67255838-67255857 | None:intergenic | 35.0% | |
| TACAATCACTCTTTGTACAC+AGG | - | chr1_1:67255922-67255941 | Msa0038020:CDS | 35.0% | |
| TCTCGCAAACCATATATTCT+GGG | - | chr1_1:67256002-67256021 | Msa0038020:five_prime_UTR | 35.0% | |
| ! | GGTTTCAGCAATATTGGTTA+AGG | - | chr1_1:67256186-67256205 | Msa0038020:intron | 35.0% |
| GTTAAGGAAGCCTACTTTAT+TGG | - | chr1_1:67256202-67256221 | Msa0038020:intron | 35.0% | |
| ! | GTTGATGAGTCCAATAAAGT+AGG | + | chr1_1:67256215-67256234 | None:intergenic | 35.0% |
| !! | GGGATTGTTGATAATGAGAA+TGG | - | chr1_1:67256473-67256492 | Msa0038020:five_prime_UTR | 35.0% |
| ! | ACTCGACTCTGTTTCTTCTT+CGG | - | chr1_1:67252365-67252384 | Msa0038020:three_prime_UTR | 40.0% |
| GCCAAATCAAACGGAAATTC+TGG | - | chr1_1:67252777-67252796 | Msa0038020:CDS | 40.0% | |
| AATGGAAGTAATTACTGCGG+TGG | - | chr1_1:67252885-67252904 | Msa0038020:intron | 40.0% | |
| ! | CAAAGTGTTCACATCATCGA+TGG | + | chr1_1:67252929-67252948 | None:intergenic | 40.0% |
| TTGGTCATTGCACCTTTCAA+TGG | + | chr1_1:67252961-67252980 | None:intergenic | 40.0% | |
| ! | CTGGTTCGTTTATATGGTGA+AGG | - | chr1_1:67253036-67253055 | Msa0038020:intron | 40.0% |
| TTTCACTACTGGTAGAGTTG+AGG | - | chr1_1:67253146-67253165 | Msa0038020:CDS | 40.0% | |
| GATAAGAGAGTCACATACTC+TGG | + | chr1_1:67253184-67253203 | None:intergenic | 40.0% | |
| TTACCTATAAGCCCTCTTAG+AGG | - | chr1_1:67253963-67253982 | Msa0038020:intron | 40.0% | |
| ! | TTTCCTCTAAGAGGGCTTAT+AGG | + | chr1_1:67253969-67253988 | None:intergenic | 40.0% |
| TAAGCCCTCTTAGAGGAAAT+TGG | - | chr1_1:67253970-67253989 | Msa0038020:intron | 40.0% | |
| GGAATCCAATTTCCTCTAAG+AGG | + | chr1_1:67253978-67253997 | None:intergenic | 40.0% | |
| GATGACTTTCCGATTCTGAT+TGG | + | chr1_1:67254137-67254156 | None:intergenic | 40.0% | |
| AAGTCATCGATGTCCTGAAT+AGG | - | chr1_1:67254149-67254168 | Msa0038020:intron | 40.0% | |
| AGTGAATGGAAACACGCATT+CGG | - | chr1_1:67254203-67254222 | Msa0038020:intron | 40.0% | |
| !!! | CCCTTTATCTTTTGGAGCAA+TGG | - | chr1_1:67254430-67254449 | Msa0038020:intron | 40.0% |
| ! | ATGGAACGGTATTGAGTCAA+TGG | - | chr1_1:67254530-67254549 | Msa0038020:intron | 40.0% |
| ! | ACGGTATTGAGTCAATGGAA+TGG | - | chr1_1:67254535-67254554 | Msa0038020:intron | 40.0% |
| GAATGGAATCATGTGCTCTT+AGG | - | chr1_1:67254552-67254571 | Msa0038020:intron | 40.0% | |
| !!! | CTCGCTTCTTCTCTTGTTTT+TGG | - | chr1_1:67255020-67255039 | Msa0038020:intron | 40.0% |
| !! | TTTGGCTTTCTAGACTCTCT+CGG | - | chr1_1:67255038-67255057 | Msa0038020:intron | 40.0% |
| TTCCATAAGCTTCATATGCC+TGG | - | chr1_1:67255117-67255136 | Msa0038020:intron | 40.0% | |
| GCACAAAGAAGGCTCATATT+TGG | - | chr1_1:67255139-67255158 | Msa0038020:intron | 40.0% | |
| CTCATATTTGGCAGAGAATG+AGG | - | chr1_1:67255151-67255170 | Msa0038020:intron | 40.0% | |
| CCAGTTCCTAGTAAAACACA+TGG | + | chr1_1:67255250-67255269 | None:intergenic | 40.0% | |
| ! | CCATGTGTTTTACTAGGAAC+TGG | - | chr1_1:67255247-67255266 | Msa0038020:intron | 40.0% |
| ! | TGTTTTACTAGGAACTGGGT+TGG | - | chr1_1:67255252-67255271 | Msa0038020:intron | 40.0% |
| AGGAAACAAAAAATTCGGGC+TGG | - | chr1_1:67255301-67255320 | Msa0038020:intron | 40.0% | |
| TGCCACAATGACCTACAATA+TGG | - | chr1_1:67255392-67255411 | Msa0038020:intron | 40.0% | |
| GAACATGAGGTGTATCACTA+TGG | + | chr1_1:67255621-67255640 | None:intergenic | 40.0% | |
| ATATGATGAACCAGAACTCG+AGG | - | chr1_1:67255767-67255786 | Msa0038020:CDS | 40.0% | |
| CAAGAAACCAAGCAATGCTA+AGG | - | chr1_1:67255945-67255964 | Msa0038020:CDS | 40.0% | |
| TGATTCACCTTAGCATTGCT+TGG | + | chr1_1:67255955-67255974 | None:intergenic | 40.0% | |
| CTCTCGCAAACCATATATTC+TGG | - | chr1_1:67256001-67256020 | Msa0038020:five_prime_UTR | 40.0% | |
| CTCGCAAACCATATATTCTG+GGG | - | chr1_1:67256003-67256022 | Msa0038020:five_prime_UTR | 40.0% | |
| !! | ACCATATATTCTGGGGCTTA+TGG | - | chr1_1:67256010-67256029 | Msa0038020:five_prime_UTR | 40.0% |
| !! | CCATATATTCTGGGGCTTAT+GGG | - | chr1_1:67256011-67256030 | Msa0038020:five_prime_UTR | 40.0% |
| !! | CATATATTCTGGGGCTTATG+GGG | - | chr1_1:67256012-67256031 | Msa0038020:five_prime_UTR | 40.0% |
| ACAAAGAATATGCAAGGCAG+AGG | - | chr1_1:67256165-67256184 | Msa0038020:intron | 40.0% | |
| AATCACACACATGATGCTAG+TGG | + | chr1_1:67256275-67256294 | None:intergenic | 40.0% | |
| !! | CTCATCAACCTTCCACTTTT+GGG | - | chr1_1:67256453-67256472 | Msa0038020:five_prime_UTR | 40.0% |
| TCAACAATCCCAAAAGTGGA+AGG | + | chr1_1:67256464-67256483 | None:intergenic | 40.0% | |
| !! | CAGAGTCGAGTTGAATAAGG+TGG | + | chr1_1:67252356-67252375 | None:intergenic | 45.0% |
| ! | CTCGACTCTGTTTCTTCTTC+GGG | - | chr1_1:67252366-67252385 | Msa0038020:three_prime_UTR | 45.0% |
| AGTAATTACTGCGGTGGCTT+CGG | - | chr1_1:67252891-67252910 | Msa0038020:intron | 45.0% | |
| TGGTGATTTGAGGAAGGTTC+TGG | - | chr1_1:67253017-67253036 | Msa0038020:intron | 45.0% | |
| TGTATCTCAAAGCATGGCCA+AGG | - | chr1_1:67253105-67253124 | Msa0038020:intron | 45.0% | |
| CAGTAGTGAAACGAGCAAGA+AGG | + | chr1_1:67253137-67253156 | None:intergenic | 45.0% | |
| CTTCTTGCTCGTTTCACTAC+TGG | - | chr1_1:67253135-67253154 | Msa0038020:intron | 45.0% | |
| AAATTGGATTCCCGCAGTCA+AGG | - | chr1_1:67253986-67254005 | Msa0038020:intron | 45.0% | |
| TGAATGCGTGTATCTCTGCA+GGG | + | chr1_1:67254021-67254040 | None:intergenic | 45.0% | |
| TTGAATGCGTGTATCTCTGC+AGG | + | chr1_1:67254022-67254041 | None:intergenic | 45.0% | |
| GTGAATGGAAACACGCATTC+GGG | - | chr1_1:67254204-67254223 | Msa0038020:intron | 45.0% | |
| ! | GGGCTATCATTTGCCTCTTT+TGG | - | chr1_1:67254454-67254473 | Msa0038020:intron | 45.0% |
| TGGAATCATGTGCTCTTAGG+TGG | - | chr1_1:67254555-67254574 | Msa0038020:intron | 45.0% | |
| TGCCAGGCATATGAAGCTTA+TGG | + | chr1_1:67255122-67255141 | None:intergenic | 45.0% | |
| TCATATGCCTGGCACAAAGA+AGG | - | chr1_1:67255128-67255147 | Msa0038020:intron | 45.0% | |
| ATATGAGCCTTCTTTGTGCC+AGG | + | chr1_1:67255138-67255157 | None:intergenic | 45.0% | |
| GAAAAGTTTGTGCTCCCCAA+AGG | - | chr1_1:67255281-67255300 | Msa0038020:intron | 45.0% | |
| CAATCCTATCGCATATGACC+TGG | - | chr1_1:67255564-67255583 | Msa0038020:intron | 45.0% | |
| TTTGCCAGGTCATATGCGAT+AGG | + | chr1_1:67255571-67255590 | None:intergenic | 45.0% | |
| ! | CGTGTCTATCTCAGTTCTGA+AGG | - | chr1_1:67255807-67255826 | Msa0038020:CDS | 45.0% |
| CCCATAAGCCCCAGAATATA+TGG | + | chr1_1:67256014-67256033 | None:intergenic | 45.0% | |
| GGGCTTATGGGGACTTATTT+CGG | - | chr1_1:67256023-67256042 | Msa0038020:five_prime_UTR | 45.0% | |
| GGCAGAGGTTTCAGCAATAT+TGG | - | chr1_1:67256180-67256199 | Msa0038020:intron | 45.0% | |
| !! | AGTTTCGGTTTGGGCAACAA+TGG | + | chr1_1:67256237-67256256 | None:intergenic | 45.0% |
| ACCGTTCACAGTTTCGGTTT+GGG | + | chr1_1:67256246-67256265 | None:intergenic | 45.0% | |
| AACCGTTCACAGTTTCGGTT+TGG | + | chr1_1:67256247-67256266 | None:intergenic | 45.0% | |
| ! | GCTCATCAACCTTCCACTTT+TGG | - | chr1_1:67256452-67256471 | Msa0038020:five_prime_UTR | 45.0% |
| GAATGCGTGTATCTCTGCAG+GGG | + | chr1_1:67254020-67254039 | None:intergenic | 50.0% | |
| ACACGCATTCAAGACATCCG+TGG | - | chr1_1:67254030-67254049 | Msa0038020:intron | 50.0% | |
| CGATCTTGATCGAACGACCA+CGG | + | chr1_1:67254050-67254069 | None:intergenic | 50.0% | |
| CGTGGTCGTTCGATCAAGAT+CGG | - | chr1_1:67254048-67254067 | Msa0038020:intron | 50.0% | |
| GTCGTTCGATCAAGATCGGA+CGG | - | chr1_1:67254052-67254071 | Msa0038020:intron | 50.0% | |
| GGACGGTCAAGATTCAAGCT+TGG | - | chr1_1:67254069-67254088 | Msa0038020:intron | 50.0% | |
| CTGGAGAAGGAGTTGTGTGA+AGG | - | chr1_1:67255350-67255369 | Msa0038020:intron | 50.0% | |
| GCCCAAACCGAAACTGTGAA+CGG | - | chr1_1:67256242-67256261 | Msa0038020:intron | 50.0% | |
| CAGCGAACCGTTCACAGTTT+CGG | + | chr1_1:67256252-67256271 | None:intergenic | 50.0% | |
| ACTGCGGTGGCTTCGGATTT+AGG | - | chr1_1:67252898-67252917 | Msa0038020:intron | 55.0% | |
| GTGAAACGAGCAAGAAGGCG+TGG | + | chr1_1:67253132-67253151 | None:intergenic | 55.0% | |
| GATTCCCGCAGTCAAGGATC+CGG | - | chr1_1:67253992-67254011 | Msa0038020:intron | 55.0% | |
| CTTTGACGCTCCTCGAGTTC+TGG | + | chr1_1:67255780-67255799 | None:intergenic | 55.0% | |
| !! | CAGAACTCGAGGAGCGTCAA+AGG | - | chr1_1:67255778-67255797 | Msa0038020:CDS | 55.0% |
| ! | GAGCAAGAAGGCGTGGACCT+TGG | + | chr1_1:67253125-67253144 | None:intergenic | 60.0% |
| GTGTATCTCTGCAGGGGAGC+CGG | + | chr1_1:67254014-67254033 | None:intergenic | 60.0% | |
| GGAGCCGGATCCTTGACTGC+GGG | + | chr1_1:67253999-67254018 | None:intergenic | 65.0% | |
| GGGAGCCGGATCCTTGACTG+CGG | + | chr1_1:67254000-67254019 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 67252179 | 67256625 | 67252179 | ID=Msa0038020;Name=Msa0038020 |
| chr1_1 | mRNA | 67252179 | 67256625 | 67252179 | ID=Msa0038020-mRNA-1;Parent=Msa0038020;Name=Msa0038020-mRNA-1;_AED=0.27;_eAED=0.27;_QI=280|0.75|0.77|1|0.87|0.77|9|333|394 |
| chr1_1 | exon | 67252179 | 67252667 | 67252179 | ID=Msa0038020-mRNA-1:exon:21864;Parent=Msa0038020-mRNA-1 |
| chr1_1 | exon | 67252760 | 67252860 | 67252760 | ID=Msa0038020-mRNA-1:exon:21863;Parent=Msa0038020-mRNA-1 |
| chr1_1 | exon | 67252976 | 67253023 | 67252976 | ID=Msa0038020-mRNA-1:exon:21862;Parent=Msa0038020-mRNA-1 |
| chr1_1 | exon | 67253143 | 67253260 | 67253143 | ID=Msa0038020-mRNA-1:exon:21861;Parent=Msa0038020-mRNA-1 |
| chr1_1 | exon | 67253347 | 67253524 | 67253347 | ID=Msa0038020-mRNA-1:exon:21860;Parent=Msa0038020-mRNA-1 |
| chr1_1 | exon | 67253632 | 67253753 | 67253632 | ID=Msa0038020-mRNA-1:exon:21859;Parent=Msa0038020-mRNA-1 |
| chr1_1 | exon | 67254714 | 67254821 | 67254714 | ID=Msa0038020-mRNA-1:exon:21858;Parent=Msa0038020-mRNA-1 |
| chr1_1 | exon | 67255619 | 67256043 | 67255619 | ID=Msa0038020-mRNA-1:exon:21857;Parent=Msa0038020-mRNA-1 |
| chr1_1 | exon | 67256417 | 67256625 | 67256417 | ID=Msa0038020-mRNA-1:exon:21856;Parent=Msa0038020-mRNA-1 |
| chr1_1 | five_prime_UTR | 67256417 | 67256625 | 67256417 | ID=Msa0038020-mRNA-1:five_prime_utr;Parent=Msa0038020-mRNA-1 |
| chr1_1 | five_prime_UTR | 67255973 | 67256043 | 67255973 | ID=Msa0038020-mRNA-1:five_prime_utr;Parent=Msa0038020-mRNA-1 |
| chr1_1 | CDS | 67255619 | 67255972 | 67255619 | ID=Msa0038020-mRNA-1:cds;Parent=Msa0038020-mRNA-1 |
| chr1_1 | CDS | 67254714 | 67254821 | 67254714 | ID=Msa0038020-mRNA-1:cds;Parent=Msa0038020-mRNA-1 |
| chr1_1 | CDS | 67253632 | 67253753 | 67253632 | ID=Msa0038020-mRNA-1:cds;Parent=Msa0038020-mRNA-1 |
| chr1_1 | CDS | 67253347 | 67253524 | 67253347 | ID=Msa0038020-mRNA-1:cds;Parent=Msa0038020-mRNA-1 |
| chr1_1 | CDS | 67253143 | 67253260 | 67253143 | ID=Msa0038020-mRNA-1:cds;Parent=Msa0038020-mRNA-1 |
| chr1_1 | CDS | 67252976 | 67253023 | 67252976 | ID=Msa0038020-mRNA-1:cds;Parent=Msa0038020-mRNA-1 |
| chr1_1 | CDS | 67252760 | 67252860 | 67252760 | ID=Msa0038020-mRNA-1:cds;Parent=Msa0038020-mRNA-1 |
| chr1_1 | CDS | 67252512 | 67252667 | 67252512 | ID=Msa0038020-mRNA-1:cds;Parent=Msa0038020-mRNA-1 |
| chr1_1 | three_prime_UTR | 67252179 | 67252511 | 67252179 | ID=Msa0038020-mRNA-1:three_prime_utr;Parent=Msa0038020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
