AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1174310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1174310 MtrunA17_Chr8g0344131 95.907 733 12 6 1 722 1 726 0.0 1436
Msa1174310 MtrunA17_Chr7g0269591 35.680 412 218 10 227 593 146 555 1.59e-62 224
Msa1174310 MtrunA17_Chr5g0395711 43.541 209 106 3 221 417 121 329 1.23e-37 150
Msa1174310 MtrunA17_Chr5g0395711 50.394 127 54 2 443 560 446 572 1.83e-28 122
Msa1174310 MtrunA17_Chr4g0069291 29.846 325 197 6 252 552 116 433 1.70e-33 136
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1174310 AT3G14050.1 66.030 733 196 10 1 711 2 703 0.0 881
Msa1174310 AT1G54130.1 63.564 752 201 15 1 720 2 712 0.0 868
Msa1174310 AT4G02260.3 39.316 351 188 7 227 552 148 498 2.53e-60 218
Msa1174310 AT4G02260.4 39.316 351 188 7 227 552 148 498 3.81e-60 218
Msa1174310 AT4G02260.2 39.316 351 188 7 227 552 148 498 4.47e-60 218
Msa1174310 AT4G02260.1 39.205 352 188 8 227 552 148 499 1.47e-58 214
Msa1174310 AT3G17470.3 31.212 330 198 7 246 552 107 430 4.19e-37 145
Msa1174310 AT3G17470.2 31.212 330 198 7 246 552 122 445 3.71e-36 144
Msa1174310 AT3G17470.1 31.212 330 198 7 246 552 107 430 4.39e-36 144

Find 187 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCATCTTCAACTTGCAATT+TGG 0.118666 8_1:+5378705 None:intergenic
TTGTAAATTCATCTCTTCTT+AGG 0.139163 8_1:-5382285 Msa1174310:five_prime_UTR
ATTAACTATGATTTCGAATT+AGG 0.147309 8_1:-5381974 Msa1174310:CDS
GATGATATCCATGACATTTA+TGG 0.178626 8_1:-5379746 Msa1174310:CDS
CTTACTTATGATTATATATA+CGG 0.188737 8_1:-5381094 Msa1174310:CDS
GATGGTGTTGGTGGTGATTC+TGG 0.210059 8_1:-5381512 Msa1174310:CDS
ATGCATTTGCAAGCAGAATT+TGG 0.213922 8_1:-5379448 Msa1174310:CDS
TGCTTTGGGTTCTTCTTGTT+TGG 0.222221 8_1:-5381588 Msa1174310:CDS
TTGTGAAGAGTTTGTTATTA+AGG 0.223595 8_1:-5381369 Msa1174310:CDS
ATTTCTTATCATGTCATTTC+TGG 0.239861 8_1:-5380036 Msa1174310:CDS
TCGAGTTTGCACAAAATTCT+TGG 0.262479 8_1:+5378841 None:intergenic
TTGCAATTTGGATCACTTAC+AGG 0.265645 8_1:+5378717 None:intergenic
CTGAATTTCTTCCCTATATT+CGG 0.288112 8_1:+5378638 None:intergenic
GCGACGGCGGCGTCTACGTC+TGG 0.303823 8_1:-5381923 Msa1174310:CDS
CTCGACAGTACTAGATTTGT+TGG 0.308633 8_1:-5378823 Msa1174310:CDS
TAGAAGTTGTTCACCGGTTA+TGG 0.315278 8_1:-5379679 Msa1174310:CDS
CAATCAGGCTTGTAAGAATA+TGG 0.320693 8_1:+5379238 None:intergenic
TCCGTATTTGCAGCATTGTT+TGG 0.330409 8_1:-5381203 Msa1174310:CDS
GATTATATATACGGGATGTT+TGG 0.331195 8_1:-5381085 Msa1174310:CDS
ACCGATTAGGAATAGCTAAT+TGG 0.332077 8_1:-5380203 Msa1174310:CDS
AAGAGCTGTCCTCATTAAAT+TGG 0.336185 8_1:-5380325 Msa1174310:CDS
CGACGAAGTTTGGTGGATCT+TGG 0.336434 8_1:-5381751 Msa1174310:CDS
TCCAATTAGCTATTCCTAAT+CGG 0.340721 8_1:+5380202 None:intergenic
GCACCTTTGGCCAACCGATT+AGG 0.347291 8_1:-5380216 Msa1174310:CDS
ACAAGTATCTGACCGAATAT+AGG 0.349388 8_1:-5378650 Msa1174310:CDS
TGTAAATTCATCTCTTCTTA+GGG 0.349575 8_1:-5382284 Msa1174310:five_prime_UTR
TTTGGAAACTGCTGTGTTGT+TGG 0.368793 8_1:-5381185 Msa1174310:CDS
GGTGGTGGTGGTGAATTTGA+TGG 0.370524 8_1:-5381530 Msa1174310:CDS
CAAAATATAACTTAAATAAC+TGG 0.370941 8_1:+5378388 None:intergenic
ATGATATCCATGACATTTAT+GGG 0.372392 8_1:-5379745 Msa1174310:CDS
TGGGTTTGTGAGAAGTGCTT+TGG 0.378293 8_1:-5381603 Msa1174310:CDS
ATCAACAACTTCTTAGCATA+AGG 0.384347 8_1:+5381419 None:intergenic
GAGAGATCATAGTCCAGTTT+CGG 0.385330 8_1:-5381726 Msa1174310:CDS
GAAAGCTCTTTGTGCTGTAC+AGG 0.386440 8_1:+5380141 None:intergenic
ATTCTTACAAGCCTGATTGC+GGG 0.405333 8_1:-5379234 Msa1174310:CDS
TAACCGGTGAACAACTTCTA+AGG 0.405585 8_1:+5379682 None:intergenic
CTTTGCAAACCTCTGCTGCT+TGG 0.408434 8_1:+5380257 None:intergenic
TTGTTCGAATTTGTACTTCA+AGG 0.408493 8_1:+5379476 None:intergenic
CCTCCCTGATCGAATTGTTC+CGG 0.409534 8_1:+5381652 None:intergenic
GATGACACTAGATGCATTAC+CGG 0.413123 8_1:-5380283 Msa1174310:CDS
GGCGTCTACGTCTGGGAAAT+CGG 0.414943 8_1:-5381915 Msa1174310:CDS
GGTGGTGAATTTGATGGTGT+TGG 0.416217 8_1:-5381524 Msa1174310:CDS
GGGTTTGTGAGAAGTGCTTT+GGG 0.417938 8_1:-5381602 Msa1174310:CDS
GGAGTTGCTGATTTAGTTGA+AGG 0.421830 8_1:-5381058 Msa1174310:CDS
TCCAAACAATGCTGCAAATA+CGG 0.422488 8_1:+5381202 None:intergenic
CAAGTATCTGACCGAATATA+GGG 0.424375 8_1:-5378649 Msa1174310:CDS
GAGGTTTGCAAAGGAAACTT+TGG 0.428632 8_1:-5380247 Msa1174310:CDS
AACCTCTGCTGCTTGGCAAC+CGG 0.433003 8_1:+5380264 None:intergenic
AATGATTGATTTATGTAGTT+GGG 0.435766 8_1:-5378411 Msa1174310:three_prime_UTR
ATGGGTGCCGGTGCGGGTAC+CGG 0.442415 8_1:-5381671 Msa1174310:CDS
ATCTCTGCACACTGTGGTGA+TGG 0.443111 8_1:-5379515 Msa1174310:CDS
AGTAAAGATTCCACTTCTGT+TGG 0.443308 8_1:-5379316 Msa1174310:CDS
TGTTTGGATTATGATTCTAC+TGG 0.445310 8_1:-5381572 Msa1174310:CDS
AATTTGGATTCGCTGCTCAT+TGG 0.445751 8_1:-5379432 Msa1174310:CDS
TCCAAATTGCAAGTTGAAGA+TGG 0.447857 8_1:-5378706 Msa1174310:CDS
CATGCACCTCAGACCATAAC+CGG 0.449375 8_1:+5379666 None:intergenic
ACAGGCTTGTGATTCAGTCT+TGG 0.449925 8_1:+5378735 None:intergenic
TACAACATACCCATTGAACT+TGG 0.450219 8_1:+5379616 None:intergenic
ATGCTACTACTACACGAAAC+AGG 0.451567 8_1:+5381692 None:intergenic
AATTCAACAGTAGTTGCTGC+TGG 0.454268 8_1:-5381148 Msa1174310:CDS
ATACATTGCCCCAAGTTCAA+TGG 0.454579 8_1:-5379626 Msa1174310:CDS
TAGATTTGTTGGAGAGGGTC+GGG 0.457657 8_1:-5378812 Msa1174310:CDS
TGGTGGTGATTCTGGAATTG+TGG 0.457934 8_1:-5381504 Msa1174310:CDS
ATCTTCGTCACCGGCGTCTA+CGG 0.466938 8_1:-5381945 Msa1174310:CDS
TTGGATTCGCTGCTCATTGG+AGG 0.470246 8_1:-5379429 Msa1174310:CDS
AGTAGCATGGGTGCCGGTGC+GGG 0.474221 8_1:-5381677 Msa1174310:CDS
TACGTCTGGGAAATCGGTGA+TGG 0.474358 8_1:-5381909 Msa1174310:CDS
TACATTGCCCCAAGTTCAAT+GGG 0.477235 8_1:-5379625 Msa1174310:intron
GCTGTGTTGTTGGCTTTGAT+CGG 0.482957 8_1:-5381175 Msa1174310:CDS
GCCTCAATTCTTCCTTCAGA+GGG 0.483136 8_1:+5378757 None:intergenic
CGATCAGGGAGGGGAAGTAC+TGG 0.484040 8_1:-5381641 Msa1174310:CDS
GAATGATTGATTTATGTAGT+TGG 0.484156 8_1:-5378412 Msa1174310:three_prime_UTR
GGTACCGGAACAATTCGATC+AGG 0.485761 8_1:-5381656 Msa1174310:CDS
TGTTCGAATTTGTACTTCAA+GGG 0.486391 8_1:+5379477 None:intergenic
GCTGCGCTTGATTGTTGATA+AGG 0.487554 8_1:-5379723 Msa1174310:CDS
AGCTTTCTCAGCTTCACAAA+AGG 0.487843 8_1:+5381346 None:intergenic
GAATGAATAAGGAACAAGAA+GGG 0.488008 8_1:+5382438 None:intergenic
AGGGGAGGAGTATGAAAAGA+CGG 0.491616 8_1:+5382457 None:intergenic
AGATTACGCGGTGGTGGTGG+TGG 0.491666 8_1:-5381545 Msa1174310:CDS
GGGAGGGGAAGTACTGGTGG+TGG 0.494745 8_1:-5381635 Msa1174310:CDS
GGGCTCGATGGGTTGTCACC+TGG 0.495606 8_1:-5379354 Msa1174310:CDS
TGAAAAGACGGGTTTAACCT+TGG 0.495675 8_1:+5382469 None:intergenic
GGGGAGGAGTATGAAAAGAC+GGG 0.499636 8_1:+5382458 None:intergenic
AGAGAGAAGCACGCAAGAGA+TGG 0.503862 8_1:+5382358 None:intergenic
GTTAGATTACGCGGTGGTGG+TGG 0.504725 8_1:-5381548 Msa1174310:CDS
AGATACTTGTCAGGTATGGC+TGG 0.505901 8_1:+5378663 None:intergenic
AGAGCTTTCGTCAAAGCTTG+TGG 0.510991 8_1:-5380127 Msa1174310:CDS
TTACTTATGATTATATATAC+GGG 0.511289 8_1:-5381093 Msa1174310:CDS
TTACGCGGTGGTGGTGGTGG+TGG 0.511301 8_1:-5381542 Msa1174310:CDS
TATTCGGTCAGATACTTGTC+AGG 0.512446 8_1:+5378654 None:intergenic
ATCTTCATCACCACCACCAC+CGG 0.515186 8_1:+5381817 None:intergenic
CGCTGCTCATTGGAGGTACA+AGG 0.516170 8_1:-5379422 Msa1174310:CDS
TTCTTCATATGTGCTTCAGA+TGG 0.516537 8_1:-5379383 Msa1174310:CDS
GGTGAATTTGATGGTGTTGG+TGG 0.516562 8_1:-5381521 Msa1174310:CDS
CGGTTATGGTCTGAGGTGCA+TGG 0.519568 8_1:-5379665 Msa1174310:CDS
CTAGATTTGTTGGAGAGGGT+CGG 0.525008 8_1:-5378813 Msa1174310:CDS
TTACAAGCCTGATTGCGGGC+AGG 0.526518 8_1:-5379230 Msa1174310:CDS
GGAGGGGAAGTACTGGTGGT+GGG 0.527525 8_1:-5381634 Msa1174310:CDS
GGCCTCAATTCTTCCTTCAG+AGG 0.533475 8_1:+5378756 None:intergenic
TGAGAAAGCTCATAGAGGAC+AGG 0.534366 8_1:-5381333 Msa1174310:intron
TGGTGATGAAGATGAATTGA+AGG 0.535373 8_1:-5381807 Msa1174310:CDS
ACAACATACCCATTGAACTT+GGG 0.535483 8_1:+5379617 None:intergenic
GTCACCGGCGTCTACGGCGA+CGG 0.537490 8_1:-5381939 Msa1174310:CDS
AGATGGTTGAGTGGGCTCGA+TGG 0.537950 8_1:-5379366 Msa1174310:CDS
GCTGTGACTAAATCAAATGT+TGG 0.538779 8_1:+5378510 None:intergenic
GATGGTTGAGTGGGCTCGAT+GGG 0.540134 8_1:-5379365 Msa1174310:CDS
CGGGCTAACTGTATCAAGCA+TGG 0.545579 8_1:-5378601 Msa1174310:CDS
AACATATAGGTTCCCTCTGA+AGG 0.546405 8_1:-5378769 Msa1174310:CDS
GACAGTTATCAGCATGAGAA+GGG 0.546477 8_1:+5379260 None:intergenic
TGTTTCGTGTAGTAGTAGCA+TGG 0.546500 8_1:-5381690 Msa1174310:CDS
ATCGACAAATCCAACAGAAG+TGG 0.547140 8_1:+5379306 None:intergenic
ATATACGGGATGTTTGGAGC+TGG 0.549390 8_1:-5381079 Msa1174310:CDS
CCAAATTGCAAGTTGAAGAT+GGG 0.550752 8_1:-5378705 Msa1174310:CDS
AATTGTTCCGGTACCCGCAC+CGG 0.551906 8_1:+5381664 None:intergenic
ATTAGCTATTCCTAATCGGT+TGG 0.552553 8_1:+5380206 None:intergenic
CTCTTGCATCTGCCATTGCA+AGG 0.553256 8_1:+5380343 None:intergenic
TTGCAAGGAACATTGTATGC+AGG 0.553528 8_1:+5380358 None:intergenic
GAGCAAGCACTCAAAGATGA+AGG 0.553848 8_1:-5380060 Msa1174310:CDS
GCATACAATGTTCCTTGCAA+TGG 0.556040 8_1:-5380355 Msa1174310:CDS
ACGTCTGGGAAATCGGTGAT+GGG 0.557642 8_1:-5381908 Msa1174310:CDS
ATTCAACAGTAGTTGCTGCT+GGG 0.558656 8_1:-5381147 Msa1174310:CDS
TAGTAGCATGGGTGCCGGTG+CGG 0.559495 8_1:-5381678 Msa1174310:CDS
TATTCTTACAAGCCTGATTG+CGG 0.560842 8_1:-5379235 Msa1174310:CDS
GCTACTGCAAGCAGCATGGT+TGG 0.562551 8_1:-5378570 Msa1174310:CDS
GGTCAGATACTTGTCAGGTA+TGG 0.563602 8_1:+5378659 None:intergenic
AGCGCAGCCCATAAATGTCA+TGG 0.564123 8_1:+5379738 None:intergenic
TACCGGTTGCCAAGCAGCAG+AGG 0.564469 8_1:-5380266 Msa1174310:CDS
GGAACAATTCGATCAGGGAG+GGG 0.565296 8_1:-5381650 Msa1174310:CDS
CGACGGCGGCGTCTACGTCT+GGG 0.569402 8_1:-5381922 Msa1174310:CDS
GGAATGAATAAGGAACAAGA+AGG 0.570177 8_1:+5382437 None:intergenic
CTTATCATGTCATTTCTGGA+CGG 0.571086 8_1:-5380032 Msa1174310:CDS
CAACATACCCATTGAACTTG+GGG 0.571860 8_1:+5379618 None:intergenic
GGACAGTTATCAGCATGAGA+AGG 0.573734 8_1:+5379259 None:intergenic
GCTGTAGGTTGACAACATAT+AGG 0.573805 8_1:-5378782 Msa1174310:CDS
TGTTCACCGGTTATGGTCTG+AGG 0.575398 8_1:-5379672 Msa1174310:CDS
AATGAATAAGGAACAAGAAG+GGG 0.578319 8_1:+5382439 None:intergenic
GAGTTGCTGATTTAGTTGAA+GGG 0.580287 8_1:-5381057 Msa1174310:CDS
TCTCTGCACACTGTGGTGAT+GGG 0.580339 8_1:-5379514 Msa1174310:CDS
ATCGATCAGCCAATTTAATG+AGG 0.581475 8_1:+5380316 None:intergenic
GAATAAGGAACAAGAAGGGG+AGG 0.582290 8_1:+5382442 None:intergenic
GTTTCGTGTAGTAGTAGCAT+GGG 0.582976 8_1:-5381689 Msa1174310:CDS
AAGCCTTAGAAGTTGTTCAC+CGG 0.583932 8_1:-5379685 Msa1174310:CDS
GGGTCGGGCGAGCAAGCTGT+AGG 0.584040 8_1:-5378797 Msa1174310:CDS
ACTGAGTCACTTAAGCAAGC+TGG 0.586111 8_1:-5380424 Msa1174310:CDS
AGTACTAGATTTGTTGGAGA+GGG 0.591903 8_1:-5378817 Msa1174310:CDS
CGGAACAATTCGATCAGGGA+GGG 0.592758 8_1:-5381651 Msa1174310:CDS
GGTTATGGTCTGAGGTGCAT+GGG 0.593196 8_1:-5379664 Msa1174310:CDS
CACACTGTGGTGATGGGTGA+AGG 0.596315 8_1:-5379508 Msa1174310:CDS
AAAGCTCTTTGTGCTGTACA+GGG 0.599815 8_1:+5380142 None:intergenic
GGTGTAGAACACACACTACT+CGG 0.601489 8_1:+5382004 None:intergenic
ATTAGGAATAGCTAATTGGA+AGG 0.601826 8_1:-5380199 Msa1174310:CDS
TTCAGCGAATGTATGATCGC+GGG 0.602849 8_1:-5378620 Msa1174310:CDS
GCGCTTGATTGTTGATAAGG+AGG 0.603331 8_1:-5379720 Msa1174310:CDS
TGTAGTAGTAGCATGGGTGC+CGG 0.604049 8_1:-5381683 Msa1174310:CDS
GTTCGAATTTGTACTTCAAG+GGG 0.605083 8_1:+5379478 None:intergenic
ATTCCTAATCGGTTGGCCAA+AGG 0.606063 8_1:+5380213 None:intergenic
CAAGCAGCAGAGGTTTGCAA+AGG 0.607809 8_1:-5380256 Msa1174310:CDS
GCATGAGAAGGGAACTTGCA+AGG 0.608349 8_1:+5379271 None:intergenic
TCAGGGAGGGGAAGTACTGG+TGG 0.609082 8_1:-5381638 Msa1174310:CDS
TGTGCTTCAGATGGTTGAGT+GGG 0.610056 8_1:-5379374 Msa1174310:CDS
ATGTGCTTCAGATGGTTGAG+TGG 0.615998 8_1:-5379375 Msa1174310:CDS
AGGATCTAGATCTTCGTCAC+CGG 0.616184 8_1:-5381954 Msa1174310:CDS
GGGCTAACTGTATCAAGCAT+GGG 0.621683 8_1:-5378600 Msa1174310:CDS
TGTGGTGATGGGTGAAGGCA+AGG 0.624487 8_1:-5379503 Msa1174310:CDS
TACTGCTACTGCAAGCAGCA+TGG 0.624524 8_1:-5378574 Msa1174310:CDS
GGTGTTAGATTACGCGGTGG+TGG 0.624885 8_1:-5381551 Msa1174310:CDS
GCCGCCGTCGCCGTAGACGC+CGG 0.625619 8_1:+5381935 None:intergenic
AAATCATAGTTAATCTGATG+CGG 0.628203 8_1:+5381983 None:intergenic
TCCCTCTGAAGGAAGAATTG+AGG 0.628438 8_1:-5378758 Msa1174310:CDS
CAAGATCCACCAAACTTCGT+CGG 0.628498 8_1:+5381752 None:intergenic
TCTGGGAAATCGGTGATGGG+TGG 0.638476 8_1:-5381905 Msa1174310:CDS
CAGTACTAGATTTGTTGGAG+AGG 0.642485 8_1:-5378818 Msa1174310:CDS
TGTTTGTAGATGCGAGCTAG+TGG 0.645770 8_1:-5381229 Msa1174310:intron
GAAGCTGAGAAAGCTCATAG+AGG 0.646306 8_1:-5381338 Msa1174310:CDS
TCTACTGGTGTTAGATTACG+CGG 0.646568 8_1:-5381557 Msa1174310:CDS
AGTTGCTGATTTAGTTGAAG+GGG 0.648111 8_1:-5381056 Msa1174310:intron
ACCGGCGTCTACGGCGACGG+CGG 0.651192 8_1:-5381936 Msa1174310:CDS
ACATGCTGCTTCACCACCGT+CGG 0.651198 8_1:+5381860 None:intergenic
CAAGGAACATTGTATGCAGG+CGG 0.659437 8_1:+5380361 None:intergenic
GTACCGGAACAATTCGATCA+GGG 0.659700 8_1:-5381655 Msa1174310:CDS
ATTCAGCGAATGTATGATCG+CGG 0.666404 8_1:-5378621 Msa1174310:CDS
ATATACAAATGAATGTGCCG+AGG 0.677700 8_1:+5382249 None:intergenic
CCGGAACAATTCGATCAGGG+AGG 0.701868 8_1:-5381652 Msa1174310:CDS
GTAGAACACACACTACTCGG+TGG 0.713186 8_1:+5382007 None:intergenic
ACTGGTGTTAGATTACGCGG+TGG 0.729692 8_1:-5381554 Msa1174310:CDS
TGAGAAGGGAACTTGCAAGG+TGG 0.737719 8_1:+5379274 None:intergenic
TTATCAATCTCTGCACACTG+TGG 0.751179 8_1:-5379521 Msa1174310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTACTTATGATTATATATA+CGG - chr8_1:5379776-5379795 Msa1174310:intron 15.0%
!! TTACTTATGATTATATATAC+GGG - chr8_1:5379777-5379796 Msa1174310:intron 15.0%
!!! TAGAATTATGTTCAATATTT+TGG - chr8_1:5381709-5381728 Msa1174310:CDS 15.0%
!!! AGAATTATGTTCAATATTTT+GGG - chr8_1:5381710-5381729 Msa1174310:CDS 15.0%
!! CAAAATATAACTTAAATAAC+TGG + chr8_1:5382485-5382504 None:intergenic 15.0%
!!! TTGTTTGTGTTTATGTTTTA+TGG + chr8_1:5378460-5378479 None:intergenic 20.0%
!! AGAGATGAATTTACAAAAAA+GGG + chr8_1:5378581-5378600 None:intergenic 20.0%
!! AAGAGATGAATTTACAAAAA+AGG + chr8_1:5378582-5378601 None:intergenic 20.0%
!!! TGTTTTTTAATTTTGTACAG+AGG + chr8_1:5378708-5378727 None:intergenic 20.0%
!!! TTCTTCTTCTTTTTCAATTT+GGG + chr8_1:5378781-5378800 None:intergenic 20.0%
!! ATTAACTATGATTTCGAATT+AGG - chr8_1:5378896-5378915 Msa1174310:intron 20.0%
!!! TTTAAGATTAAGATGATTGA+TGG - chr8_1:5379877-5379896 Msa1174310:intron 20.0%
!! ATAAATAATGAAATGAAAGC+AGG + chr8_1:5381761-5381780 None:intergenic 20.0%
!!! AATGATTGATTTATGTAGTT+GGG - chr8_1:5382459-5382478 Msa1174310:five_prime_UTR 20.0%
!!! GTTTAACCTTGGATTTTTTT+TGG + chr8_1:5378393-5378412 None:intergenic 25.0%
!! TTTGTGTTTATGTTTTATGG+AGG + chr8_1:5378457-5378476 None:intergenic 25.0%
! AATTTACAAAAAAGGGATTC+TGG + chr8_1:5378574-5378593 None:intergenic 25.0%
! TTGTAAATTCATCTCTTCTT+AGG - chr8_1:5378585-5378604 Msa1174310:CDS 25.0%
! TGTAAATTCATCTCTTCTTA+GGG - chr8_1:5378586-5378605 Msa1174310:CDS 25.0%
!!! CTTTTTCAATTTGGGAATTA+GGG + chr8_1:5378773-5378792 None:intergenic 25.0%
!!! TCTTTTTCAATTTGGGAATT+AGG + chr8_1:5378774-5378793 None:intergenic 25.0%
!!! CTTCTTCTTCTTTTTCAATT+TGG + chr8_1:5378782-5378801 None:intergenic 25.0%
! AAATCATAGTTAATCTGATG+CGG + chr8_1:5378890-5378909 None:intergenic 25.0%
!! TAATTTGGATGATACTTTTG+TGG - chr8_1:5379402-5379421 Msa1174310:CDS 25.0%
!!! TTGTGAAGAGTTTGTTATTA+AGG - chr8_1:5379501-5379520 Msa1174310:CDS 25.0%
!! TTATGTGTGTTTGTGATTTT+TGG - chr8_1:5379577-5379596 Msa1174310:intron 25.0%
!!! TTTCGGTGTTAATCAATAAT+TGG - chr8_1:5379848-5379867 Msa1174310:intron 25.0%
!!! TTCGGTGTTAATCAATAATT+GGG - chr8_1:5379849-5379868 Msa1174310:intron 25.0%
! TAATAACTACAAACATCAAG+AGG + chr8_1:5380097-5380116 None:intergenic 25.0%
! AATGACAATTCAAATCCATT+AGG - chr8_1:5380129-5380148 Msa1174310:CDS 25.0%
! CAAATCTATCATAAAAAGCT+AGG + chr8_1:5380177-5380196 None:intergenic 25.0%
!! TTTTTGTATTGCTAGTGATT+TGG - chr8_1:5380250-5380269 Msa1174310:CDS 25.0%
!!! AAACCGATTAATTTGTATTG+TGG - chr8_1:5380299-5380318 Msa1174310:CDS 25.0%
! CAACCACAATACAAATTAAT+CGG + chr8_1:5380305-5380324 None:intergenic 25.0%
!! ATTTCTTATCATGTCATTTC+TGG - chr8_1:5380834-5380853 Msa1174310:intron 25.0%
!! TTTGAAGTGTGCAAATAATA+TGG + chr8_1:5381055-5381074 None:intergenic 25.0%
! ATGATATCCATGACATTTAT+GGG - chr8_1:5381125-5381144 Msa1174310:CDS 25.0%
! TAAATCAGATGATATAGAGA+CGG + chr8_1:5381312-5381331 None:intergenic 25.0%
!!! TTCAATATTTTGGGTTTAGT+TGG - chr8_1:5381719-5381738 Msa1174310:CDS 25.0%
! GAAAACAAGTGTTAAAACAA+AGG + chr8_1:5381802-5381821 None:intergenic 25.0%
! TTGTACAGATATTTGAAAAC+AGG - chr8_1:5381843-5381862 Msa1174310:CDS 25.0%
! AAACAGGAAACTGTTAAATT+AGG - chr8_1:5381859-5381878 Msa1174310:CDS 25.0%
! AACAGGAAACTGTTAAATTA+GGG - chr8_1:5381860-5381879 Msa1174310:CDS 25.0%
!!! TTTTTTATCTCAAACCAAAC+AGG - chr8_1:5381915-5381934 Msa1174310:CDS 25.0%
!!! TTTTTGAAGAACAAGCAAAA+GGG + chr8_1:5382336-5382355 None:intergenic 25.0%
!!! ATTTTTGAAGAACAAGCAAA+AGG + chr8_1:5382337-5382356 None:intergenic 25.0%
!! GAATGATTGATTTATGTAGT+TGG - chr8_1:5382458-5382477 Msa1174310:five_prime_UTR 25.0%
ATTCCACCAAAAAAAATCCA+AGG - chr8_1:5378384-5378403 Msa1174310:three_prime_UTR 30.0%
!!! TAACCTTGGATTTTTTTTGG+TGG + chr8_1:5378390-5378409 None:intergenic 30.0%
AATGAATAAGGAACAAGAAG+GGG + chr8_1:5378434-5378453 None:intergenic 30.0%
GAATGAATAAGGAACAAGAA+GGG + chr8_1:5378435-5378454 None:intergenic 30.0%
! GTTTTATGGAGGAATGAATA+AGG + chr8_1:5378446-5378465 None:intergenic 30.0%
!!! AAGAAGAAGGTTTTGGTTTA+TGG - chr8_1:5378811-5378830 Msa1174310:CDS 30.0%
TGTTTGGATTATGATTCTAC+TGG - chr8_1:5379298-5379317 Msa1174310:CDS 30.0%
!! GGATGAGTTGACTTTTAATT+TGG - chr8_1:5379387-5379406 Msa1174310:CDS 30.0%
ATCAACAACTTCTTAGCATA+AGG + chr8_1:5379454-5379473 None:intergenic 30.0%
GATTATATATACGGGATGTT+TGG - chr8_1:5379785-5379804 Msa1174310:intron 30.0%
AACATGCAATGCAAATCAAA+AGG + chr8_1:5379911-5379930 None:intergenic 30.0%
AGCTTATTGCATAAACCTAA+TGG + chr8_1:5380147-5380166 None:intergenic 30.0%
TATGTTATGTGTTTGTCAAG+TGG - chr8_1:5380206-5380225 Msa1174310:CDS 30.0%
!!! AGTGATTTGGCTTTTTTGTA+TGG - chr8_1:5380263-5380282 Msa1174310:CDS 30.0%
!! CGATTAATTTGTATTGTGGT+TGG - chr8_1:5380303-5380322 Msa1174310:CDS 30.0%
TCCAATTAGCTATTCCTAAT+CGG + chr8_1:5380671-5380690 None:intergenic 30.0%
ATTAGGAATAGCTAATTGGA+AGG - chr8_1:5380671-5380690 Msa1174310:intron 30.0%
ATAATATGGTGCATAATGTC+AGG + chr8_1:5381041-5381060 None:intergenic 30.0%
TCATTTGTCTACATATTTGC+AGG - chr8_1:5381086-5381105 Msa1174310:CDS 30.0%
GATGATATCCATGACATTTA+TGG - chr8_1:5381124-5381143 Msa1174310:CDS 30.0%
TGTTCGAATTTGTACTTCAA+GGG + chr8_1:5381396-5381415 None:intergenic 30.0%
TTGTTCGAATTTGTACTTCA+AGG + chr8_1:5381397-5381416 None:intergenic 30.0%
TCAATCATGATAACAAACAC+AGG + chr8_1:5381671-5381690 None:intergenic 30.0%
TATCATGATTGAGAATGACA+AGG - chr8_1:5381679-5381698 Msa1174310:CDS 30.0%
ACAGGAAACTGTTAAATTAG+GGG - chr8_1:5381861-5381880 Msa1174310:CDS 30.0%
TTATACACTTCATGAAACCA+AGG + chr8_1:5381941-5381960 None:intergenic 30.0%
CTGAATTTCTTCCCTATATT+CGG + chr8_1:5382235-5382254 None:intergenic 30.0%
GGAATGAATAAGGAACAAGA+AGG + chr8_1:5378436-5378455 None:intergenic 35.0%
! GGGATTCTGGAAAAATATGA+AGG + chr8_1:5378561-5378580 None:intergenic 35.0%
! TAGGGTTCTTTTCTTATCCT+CGG - chr8_1:5378604-5378623 Msa1174310:CDS 35.0%
ATATACAAATGAATGTGCCG+AGG + chr8_1:5378624-5378643 None:intergenic 35.0%
GAAGAAGAAGAAGAAGAAGA+AGG - chr8_1:5378792-5378811 Msa1174310:CDS 35.0%
! GAAGAAGAAGAAGAAGGTTT+TGG - chr8_1:5378804-5378823 Msa1174310:CDS 35.0%
!!! AAGAAGGTTTTGGTTTATGG+CGG - chr8_1:5378814-5378833 Msa1174310:CDS 35.0%
!! CCTTTTACTTCGAGTTTTTC+CGG - chr8_1:5379034-5379053 Msa1174310:intron 35.0%
! TGGTGATGAAGATGAATTGA+AGG - chr8_1:5379063-5379082 Msa1174310:intron 35.0%
! TTTGGATGATACTTTTGTGG+AGG - chr8_1:5379405-5379424 Msa1174310:CDS 35.0%
! TTGGATGATACTTTTGTGGA+GGG - chr8_1:5379406-5379425 Msa1174310:CDS 35.0%
TCCAAACAATGCTGCAAATA+CGG + chr8_1:5379671-5379690 None:intergenic 35.0%
!! GAGTTGCTGATTTAGTTGAA+GGG - chr8_1:5379813-5379832 Msa1174310:intron 35.0%
!! AGTTGCTGATTTAGTTGAAG+GGG - chr8_1:5379814-5379833 Msa1174310:intron 35.0%
!!! AAGGGGTGAGGAATTTTTTT+CGG - chr8_1:5379831-5379850 Msa1174310:intron 35.0%
! ATTGTGGTTGGCATTTTTGT+AGG - chr8_1:5380315-5380334 Msa1174310:CDS 35.0%
GCTTCAAGAATCTAACTGAT+TGG - chr8_1:5380402-5380421 Msa1174310:CDS 35.0%
!! ACTGATTGGTATGCTATTTC+AGG - chr8_1:5380416-5380435 Msa1174310:CDS 35.0%
AAGAGCTGTCCTCATTAAAT+TGG - chr8_1:5380545-5380564 Msa1174310:intron 35.0%
ATCGATCAGCCAATTTAATG+AGG + chr8_1:5380557-5380576 None:intergenic 35.0%
! TTTGGAGATTTTTGCACCTT+TGG - chr8_1:5380641-5380660 Msa1174310:intron 35.0%
ATTAGCTATTCCTAATCGGT+TGG + chr8_1:5380667-5380686 None:intergenic 35.0%
ACCGATTAGGAATAGCTAAT+TGG - chr8_1:5380667-5380686 Msa1174310:intron 35.0%
! CTTATCATGTCATTTCTGGA+CGG - chr8_1:5380838-5380857 Msa1174310:intron 35.0%
TTACCTTTCCCTCTTTCATT+TGG - chr8_1:5380906-5380925 Msa1174310:intron 35.0%
ACAACATACCCATTGAACTT+GGG + chr8_1:5381256-5381275 None:intergenic 35.0%
TACAACATACCCATTGAACT+TGG + chr8_1:5381257-5381276 None:intergenic 35.0%
GGTATGTTGTAGCTCAATAA+TGG - chr8_1:5381266-5381285 Msa1174310:intron 35.0%
GTTCGAATTTGTACTTCAAG+GGG + chr8_1:5381395-5381414 None:intergenic 35.0%
ATGCATTTGCAAGCAGAATT+TGG - chr8_1:5381422-5381441 Msa1174310:CDS 35.0%
TTCTTCATATGTGCTTCAGA+TGG - chr8_1:5381487-5381506 Msa1174310:CDS 35.0%
AGTAAAGATTCCACTTCTGT+TGG - chr8_1:5381554-5381573 Msa1174310:CDS 35.0%
CAATCAGGCTTGTAAGAATA+TGG + chr8_1:5381635-5381654 None:intergenic 35.0%
TATTCTTACAAGCCTGATTG+CGG - chr8_1:5381635-5381654 Msa1174310:CDS 35.0%
ACTATCATTCTGTCTGATTC+TGG - chr8_1:5381990-5382009 Msa1174310:CDS 35.0%
TCGAGTTTGCACAAAATTCT+TGG + chr8_1:5382032-5382051 None:intergenic 35.0%
!! AGTACTAGATTTGTTGGAGA+GGG - chr8_1:5382053-5382072 Msa1174310:exon 35.0%
TTGCAATTTGGATCACTTAC+AGG + chr8_1:5382156-5382175 None:intergenic 35.0%
! TCCAAATTGCAAGTTGAAGA+TGG - chr8_1:5382164-5382183 Msa1174310:five_prime_UTR 35.0%
! CCAAATTGCAAGTTGAAGAT+GGG - chr8_1:5382165-5382184 Msa1174310:five_prime_UTR 35.0%
ACAAGTATCTGACCGAATAT+AGG - chr8_1:5382220-5382239 Msa1174310:five_prime_UTR 35.0%
CAAGTATCTGACCGAATATA+GGG - chr8_1:5382221-5382240 Msa1174310:five_prime_UTR 35.0%
GCTGTGACTAAATCAAATGT+TGG + chr8_1:5382363-5382382 None:intergenic 35.0%
! TGAAAAGACGGGTTTAACCT+TGG + chr8_1:5378404-5378423 None:intergenic 40.0%
!! GTGTTTGTTTTCATCTCCGA+CGG - chr8_1:5378994-5379013 Msa1174310:intron 40.0%
CCGGAAAAACTCGAAGTAAA+AGG + chr8_1:5379037-5379056 None:intergenic 40.0%
!! TTTACTTCGAGTTTTTCCGG+TGG - chr8_1:5379037-5379056 Msa1174310:intron 40.0%
! TCATTTTCACCGACGAAGTT+TGG - chr8_1:5379109-5379128 Msa1174310:intron 40.0%
GAGAGATCATAGTCCAGTTT+CGG - chr8_1:5379144-5379163 Msa1174310:intron 40.0%
ATGCTACTACTACACGAAAC+AGG + chr8_1:5379181-5379200 None:intergenic 40.0%
TGTTTCGTGTAGTAGTAGCA+TGG - chr8_1:5379180-5379199 Msa1174310:intron 40.0%
GTTTCGTGTAGTAGTAGCAT+GGG - chr8_1:5379181-5379200 Msa1174310:intron 40.0%
! TGCTTTGGGTTCTTCTTGTT+TGG - chr8_1:5379282-5379301 Msa1174310:CDS 40.0%
! TCTACTGGTGTTAGATTACG+CGG - chr8_1:5379313-5379332 Msa1174310:CDS 40.0%
AGCTTTCTCAGCTTCACAAA+AGG + chr8_1:5379527-5379546 None:intergenic 40.0%
TCCGTATTTGCAGCATTGTT+TGG - chr8_1:5379667-5379686 Msa1174310:CDS 40.0%
TTTGGAAACTGCTGTGTTGT+TGG - chr8_1:5379685-5379704 Msa1174310:CDS 40.0%
AATTCAACAGTAGTTGCTGC+TGG - chr8_1:5379722-5379741 Msa1174310:CDS 40.0%
ATTCAACAGTAGTTGCTGCT+GGG - chr8_1:5379723-5379742 Msa1174310:CDS 40.0%
!! GGAGTTGCTGATTTAGTTGA+AGG - chr8_1:5379812-5379831 Msa1174310:intron 40.0%
GATGTCTTCCACCAATTGTT+CGG - chr8_1:5380015-5380034 Msa1174310:CDS 40.0%
ATGTCTTCCACCAATTGTTC+GGG - chr8_1:5380016-5380035 Msa1174310:CDS 40.0%
TTGCAAGGAACATTGTATGC+AGG + chr8_1:5380515-5380534 None:intergenic 40.0%
GCATACAATGTTCCTTGCAA+TGG - chr8_1:5380515-5380534 Msa1174310:intron 40.0%
GATGACACTAGATGCATTAC+CGG - chr8_1:5380587-5380606 Msa1174310:intron 40.0%
GAGGTTTGCAAAGGAAACTT+TGG - chr8_1:5380623-5380642 Msa1174310:intron 40.0%
AAAGCTCTTTGTGCTGTACA+GGG + chr8_1:5380731-5380750 None:intergenic 40.0%
CATCCAAATGAAAGAGGGAA+AGG + chr8_1:5380912-5380931 None:intergenic 40.0%
CTTTCCCTCTTTCATTTGGA+TGG - chr8_1:5380910-5380929 Msa1174310:intron 40.0%
GTGACCATCCAAATGAAAGA+GGG + chr8_1:5380917-5380936 None:intergenic 40.0%
AGTGACCATCCAAATGAAAG+AGG + chr8_1:5380918-5380937 None:intergenic 40.0%
AAGCCTTAGAAGTTGTTCAC+CGG - chr8_1:5381185-5381204 Msa1174310:CDS 40.0%
TAACCGGTGAACAACTTCTA+AGG + chr8_1:5381191-5381210 None:intergenic 40.0%
! TAGAAGTTGTTCACCGGTTA+TGG - chr8_1:5381191-5381210 Msa1174310:CDS 40.0%
ATACATTGCCCCAAGTTCAA+TGG - chr8_1:5381244-5381263 Msa1174310:intron 40.0%
TACATTGCCCCAAGTTCAAT+GGG - chr8_1:5381245-5381264 Msa1174310:intron 40.0%
CAACATACCCATTGAACTTG+GGG + chr8_1:5381255-5381274 None:intergenic 40.0%
TTATCAATCTCTGCACACTG+TGG - chr8_1:5381349-5381368 Msa1174310:CDS 40.0%
AATTTGGATTCGCTGCTCAT+TGG - chr8_1:5381438-5381457 Msa1174310:CDS 40.0%
ATCGACAAATCCAACAGAAG+TGG + chr8_1:5381567-5381586 None:intergenic 40.0%
GACAGTTATCAGCATGAGAA+GGG + chr8_1:5381613-5381632 None:intergenic 40.0%
ATTCTTACAAGCCTGATTGC+GGG - chr8_1:5381636-5381655 Msa1174310:CDS 40.0%
CTCGACAGTACTAGATTTGT+TGG - chr8_1:5382047-5382066 Msa1174310:exon 40.0%
!! CAGTACTAGATTTGTTGGAG+AGG - chr8_1:5382052-5382071 Msa1174310:exon 40.0%
! GCTGTAGGTTGACAACATAT+AGG - chr8_1:5382088-5382107 Msa1174310:five_prime_UTR 40.0%
AACATATAGGTTCCCTCTGA+AGG - chr8_1:5382101-5382120 Msa1174310:five_prime_UTR 40.0%
CCCATCTTCAACTTGCAATT+TGG + chr8_1:5382168-5382187 None:intergenic 40.0%
TATTCGGTCAGATACTTGTC+AGG + chr8_1:5382219-5382238 None:intergenic 40.0%
ATTCAGCGAATGTATGATCG+CGG - chr8_1:5382249-5382268 Msa1174310:five_prime_UTR 40.0%
! AGGGGAGGAGTATGAAAAGA+CGG + chr8_1:5378416-5378435 None:intergenic 45.0%
GAATAAGGAACAAGAAGGGG+AGG + chr8_1:5378431-5378450 None:intergenic 45.0%
GGTGTAGAACACACACTACT+CGG + chr8_1:5378869-5378888 None:intergenic 45.0%
AGGATCTAGATCTTCGTCAC+CGG - chr8_1:5378916-5378935 Msa1174310:intron 45.0%
!! TTTGTTTTCATCTCCGACGG+TGG - chr8_1:5378997-5379016 Msa1174310:intron 45.0%
! TTTTCACCGACGAAGTTTGG+TGG - chr8_1:5379112-5379131 Msa1174310:intron 45.0%
CAAGATCCACCAAACTTCGT+CGG + chr8_1:5379121-5379140 None:intergenic 45.0%
GGACACTGAAAAACCGAAAC+TGG + chr8_1:5379160-5379179 None:intergenic 45.0%
GTACCGGAACAATTCGATCA+GGG - chr8_1:5379215-5379234 Msa1174310:intron 45.0%
!!! ACTGGTGGTGGGTTTTTTGA+TGG - chr8_1:5379247-5379266 Msa1174310:CDS 45.0%
!!! CTGGTGGTGGGTTTTTTGAT+GGG - chr8_1:5379248-5379267 Msa1174310:CDS 45.0%
!! TGGGTTTGTGAGAAGTGCTT+TGG - chr8_1:5379267-5379286 Msa1174310:CDS 45.0%
!! GGGTTTGTGAGAAGTGCTTT+GGG - chr8_1:5379268-5379287 Msa1174310:CDS 45.0%
!! GGTGGTGAATTTGATGGTGT+TGG - chr8_1:5379346-5379365 Msa1174310:CDS 45.0%
!! GGTGAATTTGATGGTGTTGG+TGG - chr8_1:5379349-5379368 Msa1174310:CDS 45.0%
!! TGGTGGTGATTCTGGAATTG+TGG - chr8_1:5379366-5379385 Msa1174310:CDS 45.0%
! ACTTTTGTGGAGGGTTGTGT+TGG - chr8_1:5379415-5379434 Msa1174310:CDS 45.0%
GAAGCTGAGAAAGCTCATAG+AGG - chr8_1:5379532-5379551 Msa1174310:intron 45.0%
TGAGAAAGCTCATAGAGGAC+AGG - chr8_1:5379537-5379556 Msa1174310:intron 45.0%
TGTTTGTAGATGCGAGCTAG+TGG - chr8_1:5379641-5379660 Msa1174310:CDS 45.0%
!! GCTGTGTTGTTGGCTTTGAT+CGG - chr8_1:5379695-5379714 Msa1174310:CDS 45.0%
! ATATACGGGATGTTTGGAGC+TGG - chr8_1:5379791-5379810 Msa1174310:intron 45.0%
CTGATTTAGTTGAAGGGGTG+AGG - chr8_1:5379819-5379838 Msa1174310:intron 45.0%
TGTCTTCCACCAATTGTTCG+GGG - chr8_1:5380017-5380036 Msa1174310:CDS 45.0%
AGAGATGTACCCCGAACAAT+TGG + chr8_1:5380029-5380048 None:intergenic 45.0%
AATTGTTCGGGGTACATCTC+TGG - chr8_1:5380028-5380047 Msa1174310:CDS 45.0%
ACTGAGTCACTTAAGCAAGC+TGG - chr8_1:5380446-5380465 Msa1174310:intron 45.0%
CAAGGAACATTGTATGCAGG+CGG + chr8_1:5380512-5380531 None:intergenic 45.0%
! ATTCCTAATCGGTTGGCCAA+AGG + chr8_1:5380660-5380679 None:intergenic 45.0%
GAAAGCTCTTTGTGCTGTAC+AGG + chr8_1:5380732-5380751 None:intergenic 45.0%
AGAGCTTTCGTCAAAGCTTG+TGG - chr8_1:5380743-5380762 Msa1174310:intron 45.0%
GAGCAAGCACTCAAAGATGA+AGG - chr8_1:5380810-5380829 Msa1174310:intron 45.0%
GCTGCGCTTGATTGTTGATA+AGG - chr8_1:5381147-5381166 Msa1174310:CDS 45.0%
! GCGCTTGATTGTTGATAAGG+AGG - chr8_1:5381150-5381169 Msa1174310:CDS 45.0%
ATGTGCTTCAGATGGTTGAG+TGG - chr8_1:5381495-5381514 Msa1174310:CDS 45.0%
TGTGCTTCAGATGGTTGAGT+GGG - chr8_1:5381496-5381515 Msa1174310:CDS 45.0%
GGACAGTTATCAGCATGAGA+AGG + chr8_1:5381614-5381633 None:intergenic 45.0%
ATCTCAAACCAAACAGGCCT+TGG - chr8_1:5381921-5381940 Msa1174310:CDS 45.0%
TCATGAAACCAAGGCCTGTT+TGG + chr8_1:5381932-5381951 None:intergenic 45.0%
!! CTAGATTTGTTGGAGAGGGT+CGG - chr8_1:5382057-5382076 Msa1174310:exon 45.0%
!! TAGATTTGTTGGAGAGGGTC+GGG - chr8_1:5382058-5382077 Msa1174310:exon 45.0%
! TCCCTCTGAAGGAAGAATTG+AGG - chr8_1:5382112-5382131 Msa1174310:five_prime_UTR 45.0%
GCCTCAATTCTTCCTTCAGA+GGG + chr8_1:5382116-5382135 None:intergenic 45.0%
ACAGGCTTGTGATTCAGTCT+TGG + chr8_1:5382138-5382157 None:intergenic 45.0%
AGATACTTGTCAGGTATGGC+TGG + chr8_1:5382210-5382229 None:intergenic 45.0%
GGTCAGATACTTGTCAGGTA+TGG + chr8_1:5382214-5382233 None:intergenic 45.0%
TTCAGCGAATGTATGATCGC+GGG - chr8_1:5382250-5382269 Msa1174310:five_prime_UTR 45.0%
GGGCTAACTGTATCAAGCAT+GGG - chr8_1:5382270-5382289 Msa1174310:five_prime_UTR 45.0%
! GGGGAGGAGTATGAAAAGAC+GGG + chr8_1:5378415-5378434 None:intergenic 50.0%
! AGAGAGAAGCACGCAAGAGA+TGG + chr8_1:5378515-5378534 None:intergenic 50.0%
GTAGAACACACACTACTCGG+TGG + chr8_1:5378866-5378885 None:intergenic 50.0%
TACGTCTGGGAAATCGGTGA+TGG - chr8_1:5378961-5378980 Msa1174310:intron 50.0%
ACGTCTGGGAAATCGGTGAT+GGG - chr8_1:5378962-5378981 Msa1174310:intron 50.0%
!! ACTTCGAGTTTTTCCGGTGG+TGG - chr8_1:5379040-5379059 Msa1174310:intron 50.0%
ATCTTCATCACCACCACCAC+CGG + chr8_1:5379056-5379075 None:intergenic 50.0%
! CGACGAAGTTTGGTGGATCT+TGG - chr8_1:5379119-5379138 Msa1174310:intron 50.0%
TGTAGTAGTAGCATGGGTGC+CGG - chr8_1:5379187-5379206 Msa1174310:intron 50.0%
! GGTACCGGAACAATTCGATC+AGG - chr8_1:5379214-5379233 Msa1174310:intron 50.0%
CCTCCCTGATCGAATTGTTC+CGG + chr8_1:5379221-5379240 None:intergenic 50.0%
CGGAACAATTCGATCAGGGA+GGG - chr8_1:5379219-5379238 Msa1174310:intron 50.0%
GGAACAATTCGATCAGGGAG+GGG - chr8_1:5379220-5379239 Msa1174310:intron 50.0%
! ACTGGTGTTAGATTACGCGG+TGG - chr8_1:5379316-5379335 Msa1174310:CDS 50.0%
!! GGTGGTGGTGGTGAATTTGA+TGG - chr8_1:5379340-5379359 Msa1174310:CDS 50.0%
!! GATGGTGTTGGTGGTGATTC+TGG - chr8_1:5379358-5379377 Msa1174310:CDS 50.0%
GATGTACCCCGAACAATTGG+TGG + chr8_1:5380026-5380045 None:intergenic 50.0%
CTCTTGCATCTGCCATTGCA+AGG + chr8_1:5380530-5380549 None:intergenic 50.0%
CTTTGCAAACCTCTGCTGCT+TGG + chr8_1:5380616-5380635 None:intergenic 50.0%
CAAGCAGCAGAGGTTTGCAA+AGG - chr8_1:5380614-5380633 Msa1174310:intron 50.0%
AGCGCAGCCCATAAATGTCA+TGG + chr8_1:5381135-5381154 None:intergenic 50.0%
! TGTTCACCGGTTATGGTCTG+AGG - chr8_1:5381198-5381217 Msa1174310:CDS 50.0%
CATGCACCTCAGACCATAAC+CGG + chr8_1:5381207-5381226 None:intergenic 50.0%
! GGTTATGGTCTGAGGTGCAT+GGG - chr8_1:5381206-5381225 Msa1174310:CDS 50.0%
ATCTCTGCACACTGTGGTGA+TGG - chr8_1:5381355-5381374 Msa1174310:CDS 50.0%
TCTCTGCACACTGTGGTGAT+GGG - chr8_1:5381356-5381375 Msa1174310:CDS 50.0%
TTGGATTCGCTGCTCATTGG+AGG - chr8_1:5381441-5381460 Msa1174310:CDS 50.0%
TGAGAAGGGAACTTGCAAGG+TGG + chr8_1:5381599-5381618 None:intergenic 50.0%
GCATGAGAAGGGAACTTGCA+AGG + chr8_1:5381602-5381621 None:intergenic 50.0%
GGCCTCAATTCTTCCTTCAG+AGG + chr8_1:5382117-5382136 None:intergenic 50.0%
CGGGCTAACTGTATCAAGCA+TGG - chr8_1:5382269-5382288 Msa1174310:five_prime_UTR 50.0%
TACTGCTACTGCAAGCAGCA+TGG - chr8_1:5382296-5382315 Msa1174310:five_prime_UTR 50.0%
ATCTTCGTCACCGGCGTCTA+CGG - chr8_1:5378925-5378944 Msa1174310:intron 55.0%
GGCGTCTACGTCTGGGAAAT+CGG - chr8_1:5378955-5378974 Msa1174310:intron 55.0%
!! TCTGGGAAATCGGTGATGGG+TGG - chr8_1:5378965-5378984 Msa1174310:intron 55.0%
! ACATGCTGCTTCACCACCGT+CGG + chr8_1:5379013-5379032 None:intergenic 55.0%
!! TCGAGTTTTTCCGGTGGTGG+TGG - chr8_1:5379043-5379062 Msa1174310:intron 55.0%
AATTGTTCCGGTACCCGCAC+CGG + chr8_1:5379209-5379228 None:intergenic 55.0%
CCGGAACAATTCGATCAGGG+AGG - chr8_1:5379218-5379237 Msa1174310:intron 55.0%
GGTGTTAGATTACGCGGTGG+TGG - chr8_1:5379319-5379338 Msa1174310:CDS 55.0%
! GTTAGATTACGCGGTGGTGG+TGG - chr8_1:5379322-5379341 Msa1174310:CDS 55.0%
! AACCTCTGCTGCTTGGCAAC+CGG + chr8_1:5380609-5380628 None:intergenic 55.0%
GCACCTTTGGCCAACCGATT+AGG - chr8_1:5380654-5380673 Msa1174310:intron 55.0%
! CGGTTATGGTCTGAGGTGCA+TGG - chr8_1:5381205-5381224 Msa1174310:CDS 55.0%
!! CACACTGTGGTGATGGGTGA+AGG - chr8_1:5381362-5381381 Msa1174310:CDS 55.0%
!! TGTGGTGATGGGTGAAGGCA+AGG - chr8_1:5381367-5381386 Msa1174310:CDS 55.0%
! CGCTGCTCATTGGAGGTACA+AGG - chr8_1:5381448-5381467 Msa1174310:CDS 55.0%
! AGATGGTTGAGTGGGCTCGA+TGG - chr8_1:5381504-5381523 Msa1174310:CDS 55.0%
! GATGGTTGAGTGGGCTCGAT+GGG - chr8_1:5381505-5381524 Msa1174310:CDS 55.0%
ACTCATTGCTTCGCACTGCC+AGG + chr8_1:5381537-5381556 None:intergenic 55.0%
TTACAAGCCTGATTGCGGGC+AGG - chr8_1:5381640-5381659 Msa1174310:CDS 55.0%
GCTACTGCAAGCAGCATGGT+TGG - chr8_1:5382300-5382319 Msa1174310:five_prime_UTR 55.0%
!! TAGTAGCATGGGTGCCGGTG+CGG - chr8_1:5379192-5379211 Msa1174310:intron 60.0%
! CGATCAGGGAGGGGAAGTAC+TGG - chr8_1:5379229-5379248 Msa1174310:CDS 60.0%
!! TCAGGGAGGGGAAGTACTGG+TGG - chr8_1:5379232-5379251 Msa1174310:CDS 60.0%
!! GGAGGGGAAGTACTGGTGGT+GGG - chr8_1:5379236-5379255 Msa1174310:CDS 60.0%
!! AGATTACGCGGTGGTGGTGG+TGG - chr8_1:5379325-5379344 Msa1174310:CDS 60.0%
! TACCGGTTGCCAAGCAGCAG+AGG - chr8_1:5380604-5380623 Msa1174310:intron 60.0%
AAGCCTGATTGCGGGCAGGA+TGG - chr8_1:5381644-5381663 Msa1174310:CDS 60.0%
!! AGTAGCATGGGTGCCGGTGC+GGG - chr8_1:5379193-5379212 Msa1174310:intron 65.0%
!! GGGAGGGGAAGTACTGGTGG+TGG - chr8_1:5379235-5379254 Msa1174310:CDS 65.0%
!! TTACGCGGTGGTGGTGGTGG+TGG - chr8_1:5379328-5379347 Msa1174310:CDS 65.0%
!! GGGCTCGATGGGTTGTCACC+TGG - chr8_1:5381516-5381535 Msa1174310:CDS 65.0%
GGTCCATCCTGCCCGCAATC+AGG + chr8_1:5381650-5381669 None:intergenic 65.0%
GTCACCGGCGTCTACGGCGA+CGG - chr8_1:5378931-5378950 Msa1174310:intron 70.0%
CGACGGCGGCGTCTACGTCT+GGG - chr8_1:5378948-5378967 Msa1174310:intron 70.0%
!! ATGGGTGCCGGTGCGGGTAC+CGG - chr8_1:5379199-5379218 Msa1174310:intron 70.0%
GGGTCGGGCGAGCAAGCTGT+AGG - chr8_1:5382073-5382092 Msa1174310:five_prime_UTR 70.0%
ACCGGCGTCTACGGCGACGG+CGG - chr8_1:5378934-5378953 Msa1174310:intron 75.0%
GCGACGGCGGCGTCTACGTC+TGG - chr8_1:5378947-5378966 Msa1174310:intron 75.0%
! GCCGCCGTCGCCGTAGACGC+CGG + chr8_1:5378938-5378957 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 5378380 5382512 5378380 ID=Msa1174310;Name=Msa1174310
chr8_1 mRNA 5378380 5382512 5378380 ID=Msa1174310-mRNA-1;Parent=Msa1174310;Name=Msa1174310-mRNA-1;_AED=0.05;_eAED=0.05;_QI=450|0.8|0.83|1|1|1|6|180|722
chr8_1 exon 5378380 5378871 5378380 ID=Msa1174310-mRNA-1:exon:1788;Parent=Msa1174310-mRNA-1
chr8_1 exon 5379222 5379543 5379222 ID=Msa1174310-mRNA-1:exon:1787;Parent=Msa1174310-mRNA-1
chr8_1 exon 5379626 5379784 5379626 ID=Msa1174310-mRNA-1:exon:1786;Parent=Msa1174310-mRNA-1
chr8_1 exon 5379994 5380454 5379994 ID=Msa1174310-mRNA-1:exon:1785;Parent=Msa1174310-mRNA-1
chr8_1 exon 5381057 5381242 5381057 ID=Msa1174310-mRNA-1:exon:1784;Parent=Msa1174310-mRNA-1
chr8_1 exon 5381334 5382512 5381334 ID=Msa1174310-mRNA-1:exon:1783;Parent=Msa1174310-mRNA-1
chr8_1 five_prime_UTR 5382063 5382512 5382063 ID=Msa1174310-mRNA-1:five_prime_utr;Parent=Msa1174310-mRNA-1
chr8_1 CDS 5381334 5382062 5381334 ID=Msa1174310-mRNA-1:cds;Parent=Msa1174310-mRNA-1
chr8_1 CDS 5381057 5381242 5381057 ID=Msa1174310-mRNA-1:cds;Parent=Msa1174310-mRNA-1
chr8_1 CDS 5379994 5380454 5379994 ID=Msa1174310-mRNA-1:cds;Parent=Msa1174310-mRNA-1
chr8_1 CDS 5379626 5379784 5379626 ID=Msa1174310-mRNA-1:cds;Parent=Msa1174310-mRNA-1
chr8_1 CDS 5379222 5379543 5379222 ID=Msa1174310-mRNA-1:cds;Parent=Msa1174310-mRNA-1
chr8_1 CDS 5378560 5378871 5378560 ID=Msa1174310-mRNA-1:cds;Parent=Msa1174310-mRNA-1
chr8_1 three_prime_UTR 5378380 5378559 5378380 ID=Msa1174310-mRNA-1:three_prime_utr;Parent=Msa1174310-mRNA-1
Gene Sequence

>Msa1174310

ATGGCGGTTTCAACTATAGCGTTATACGCGAGTCCACCGAGTAGTGTGTGTTCTACACCGCATCAGATTAACTATGATTTCGAATTAGGATCTAGATCTTCGTCACCGGCGTCTACGGCGACGGCGGCGTCTACGTCTGGGAAATCGGTGATGGGTGGTTTATCGTGTTTGTTTTCATCTCCGACGGTGGTGAAGCAGCATGTTCCTTTTACTTCGAGTTTTTCCGGTGGTGGTGGTGATGAAGATGAATTGAAGGAGCTGAGTAGTTCGTTTTCGTATTCATTTTCACCGACGAAGTTTGGTGGATCTTGGAAGAGAGATCATAGTCCAGTTTCGGTTTTTCAGTGTCCTGTTTCGTGTAGTAGTAGCATGGGTGCCGGTGCGGGTACCGGAACAATTCGATCAGGGAGGGGAAGTACTGGTGGTGGGTTTTTTGATGGGTTTGTGAGAAGTGCTTTGGGTTCTTCTTGTTTGGATTATGATTCTACTGGTGTTAGATTACGCGGTGGTGGTGGTGGTGGTGAATTTGATGGTGTTGGTGGTGATTCTGGAATTGTGGATGAGTTGACTTTTAATTTGGATGATACTTTTGTGGAGGGTTGTGTTGGAATTGAGATTGAGCCTTATGCTAAGAAGTTGTTGATGAATGCTCAGTTAAGACATAAGATCTTTTGTGAAGAGTTTGTTATTAAGGCCTTTTGTGAAGCTGAGAAAGCTCATAGAGGACAGATGCGAGCTAGTGGCGATCCGTATTTGCAGCATTGTTTGGAAACTGCTGTGTTGTTGGCTTTGATCGGTGCGAATTCAACAGTAGTTGCTGCTGGGCTTTTGCATGATACAGTTGATGATGCATTTCTTACTTATGATTATATATACGGGATGTTTGGAGCTGGAGTTGCTGATTTAGTTGAAGGGGTTTCTAAACTGAGTCACTTAAGCAAGCTGGCTCGAGACAATAATACAGCTAGCAAATCTGTTGAAGCTGACCGCCTGCATACAATGTTCCTTGCAATGGCAGATGCAAGAGCTGTCCTCATTAAATTGGCTGATCGATTACATAATATGATGACACTAGATGCATTACCGGTTGCCAAGCAGCAGAGGTTTGCAAAGGAAACTTTGGAGATTTTTGCACCTTTGGCCAACCGATTAGGAATAGCTAATTGGAAGGAACAATTAGAAAATTTATGTTTTAAGCATCTCAACCCTGTACAGCACAAAGAGCTTTCGTCAAAGCTTGTGGAATCGTATGATGACGCAATGATTGCTTCTGCAATAGAAAGATTAGAGCAAGCACTCAAAGATGAAGGCATTTCTTATCATGTCATTTCTGGACGGCACAAGAGCTTGTATAGCGTTTATTGCAAAATATTAAAGAAAAAACTAAGCATAGATGATATCCATGACATTTATGGGCTGCGCTTGATTGTTGATAAGGAGGAAGATTGTTACAAAGCCTTAGAAGTTGTTCACCGGTTATGGTCTGAGGTGCATGGGAAACTGAAAGATTACATACATTGCCCCAAGTTCAATGGTTATCAATCTCTGCACACTGTGGTGATGGGTGAAGGCAAGGTTCCCCTTGAAGTACAAATTCGAACAAAAGATATGCATTTGCAAGCAGAATTTGGATTCGCTGCTCATTGGAGGTACAAGGAAGATCATTGTCAACTTTCTTCATATGTGCTTCAGATGGTTGAGTGGGCTCGATGGGTTGTCACCTGGCAGTGCGAAGCAATGAGTAAAGATTCCACTTCTGTTGGATTTGTCGATTCAATCAAGCCACCTTGCAAGTTCCCTTCTCATGCTGATAACTGTCCATATTCTTACAAGCCTGATTGCGGGCAGGATGGACCTATGTCTGTCCAAGAATTTTGTGCAAACTCGACAGTACTAGATTTGTTGGAGAGGGTCGGGCGAGCAAGCTGTAGGTTGACAACATATAGGTTCCCTCTGAAGGAAGAATTGAGGCCAAGACTGAATCACAAGCCTGTAAGTGATCCAAATTGCAAGTTGAAGATGGGAGATGTGATCGAGCTTACACCAGCCATACCTGACAAGTATCTGACCGAATATAGGGAAGAAATTCAGCGAATGTATGATCGCGGGCTAACTGTATCAAGCATGGGAACTACTGCTACTGCAAGCAGCATGGTTGGCACTAGTTGA

Protein sequence

>Msa1174310

MAVSTIALYASPPSSVCSTPHQINYDFELGSRSSSPASTATAASTSGKSVMGGLSCLFSSPTVVKQHVPFTSSFSGGGGDEDELKELSSSFSYSFSPTKFGGSWKRDHSPVSVFQCPVSCSSSMGAGAGTGTIRSGRGSTGGGFFDGFVRSALGSSCLDYDSTGVRLRGGGGGGEFDGVGGDSGIVDELTFNLDDTFVEGCVGIEIEPYAKKLLMNAQLRHKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANSTVVAAGLLHDTVDDAFLTYDYIYGMFGAGVADLVEGVSKLSHLSKLARDNNTASKSVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPVAKQQRFAKETLEIFAPLANRLGIANWKEQLENLCFKHLNPVQHKELSSKLVESYDDAMIASAIERLEQALKDEGISYHVISGRHKSLYSVYCKILKKKLSIDDIHDIYGLRLIVDKEEDCYKALEVVHRLWSEVHGKLKDYIHCPKFNGYQSLHTVVMGEGKVPLEVQIRTKDMHLQAEFGFAAHWRYKEDHCQLSSYVLQMVEWARWVVTWQCEAMSKDSTSVGFVDSIKPPCKFPSHADNCPYSYKPDCGQDGPMSVQEFCANSTVLDLLERVGRASCRLTTYRFPLKEELRPRLNHKPVSDPNCKLKMGDVIELTPAIPDKYLTEYREEIQRMYDRGLTVSSMGTTATASSMVGTS*