AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0717900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0717900 MtrunA17_Chr5g0406741 97.892 427 9 0 1 427 1 427 0.0 873
Msa0717900 MtrunA17_Chr8g0370671 71.296 432 112 4 4 427 4 431 0.0 620
Msa0717900 MtrunA17_Chr7g0255771 46.403 278 138 3 155 424 182 456 1.00e-83 264
Msa0717900 MtrunA17_Chr5g0441371 46.125 271 143 3 155 423 148 417 3.63e-78 248
Msa0717900 MtrunA17_Chr8g0357001 47.257 237 119 2 144 380 464 694 1.69e-63 217
Msa0717900 MtrunA17_Chr1g0148681 34.247 365 209 8 85 419 47 410 1.12e-59 200
Msa0717900 MtrunA17_Chr3g0138431 39.057 297 169 6 132 419 174 467 1.77e-56 193
Msa0717900 MtrunA17_Chr3g0125051 37.500 288 162 8 145 420 216 497 6.77e-56 192
Msa0717900 MtrunA17_Chr2g0332171 41.564 243 133 5 146 380 195 436 2.07e-52 182
Msa0717900 MtrunA17_Chr3g0125041 36.071 280 168 6 156 425 228 506 5.64e-51 179
Msa0717900 MtrunA17_Chr2g0332181 37.063 286 168 5 137 411 129 413 3.30e-50 175
Msa0717900 MtrunA17_Chr1g0152871 36.015 261 157 4 165 415 84 344 1.94e-47 166
Msa0717900 MtrunA17_Chr3g0134401 34.661 251 157 3 172 415 74 324 4.68e-44 157
Msa0717900 MtrunA17_Chr3g0102851 39.207 227 127 5 170 389 30 252 1.92e-41 148
Msa0717900 MtrunA17_Chr3g0134411 33.984 256 160 4 169 415 88 343 4.29e-41 149
Msa0717900 MtrunA17_Chr3g0134421 34.387 253 157 4 172 415 84 336 2.04e-39 144
Msa0717900 MtrunA17_Chr3g0134441 35.124 242 138 5 170 397 62 298 5.67e-39 143
Msa0717900 MtrunA17_Chr3g0103471 36.283 226 133 5 170 388 20 241 2.23e-36 134
Msa0717900 MtrunA17_Chr3g0102861 35.841 226 134 5 170 388 20 241 3.05e-35 131
Msa0717900 MtrunA17_Chr3g0102621 34.764 233 141 5 163 388 19 247 2.19e-34 129
Msa0717900 MtrunA17_Chr3g0134431 31.780 236 139 5 176 406 13 231 2.93e-28 112
Msa0717900 MtrunA17_Chr3g0102631 38.286 175 101 3 222 389 1 175 4.68e-28 110
Msa0717900 MtrunA17_Chr3g0102651 38.286 175 101 3 222 389 1 175 4.68e-28 110
Msa0717900 MtrunA17_Chr3g0102661 38.286 175 101 3 222 389 1 175 4.68e-28 110
Msa0717900 MtrunA17_Chr3g0102671 38.286 175 101 3 222 389 1 175 4.68e-28 110
Msa0717900 MtrunA17_Chr6g0462981 34.766 256 144 8 174 422 47 286 7.18e-28 112
Msa0717900 MtrunA17_Chr6g0462911 31.707 246 154 6 174 415 47 282 1.55e-26 108
Msa0717900 MtrunA17_Chr5g0398791 34.302 172 108 2 171 338 2 172 3.25e-24 98.6
Msa0717900 MtrunA17_Chr5g0418901 46.914 81 43 0 226 306 7 87 4.34e-20 84.7
Msa0717900 MtrunA17_Chr1g0161581 32.447 188 112 3 174 355 336 514 7.24e-16 79.7
Msa0717900 MtrunA17_Chr2g0277271 49.123 57 29 0 209 265 33 89 3.51e-12 62.4
Msa0717900 MtrunA17_Chr3g0134781 28.571 119 82 1 199 314 61 179 9.32e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0717900 AT1G20610.1 59.701 402 154 5 26 424 33 429 4.18e-170 484
Msa0717900 AT1G76310.1 59.145 421 150 9 17 424 19 430 8.37e-169 481
Msa0717900 AT1G76310.3 55.457 449 150 10 17 424 19 458 4.75e-162 464
Msa0717900 AT2G17620.1 59.420 414 142 8 22 424 25 423 4.33e-159 456
Msa0717900 AT4G35620.1 59.048 420 138 10 22 426 27 427 2.28e-149 431
Msa0717900 AT1G76310.2 57.672 378 138 9 17 381 19 387 2.44e-143 414
Msa0717900 AT4G35620.2 58.824 374 121 9 22 381 27 381 8.04e-130 379
Msa0717900 AT1G76310.4 56.426 319 117 9 17 322 19 328 3.16e-111 330
Msa0717900 AT1G20590.1 69.364 173 53 0 230 402 63 235 6.68e-86 263
Msa0717900 AT3G11520.1 38.734 395 215 8 51 426 26 412 8.89e-86 268
Msa0717900 AT5G06150.1 36.407 423 225 8 27 424 30 433 1.13e-84 266
Msa0717900 AT2G26760.1 46.565 262 137 3 151 410 109 369 4.16e-79 250
Msa0717900 AT1G16330.1 44.086 279 154 1 141 419 366 642 1.49e-77 253
Msa0717900 AT4G37490.1 44.366 284 151 4 147 424 140 422 2.17e-75 241
Msa0717900 AT3G11520.2 39.143 350 186 8 51 381 26 367 7.34e-75 239
Msa0717900 AT1G77390.1 39.033 269 156 4 155 416 162 429 4.98e-59 199
Msa0717900 AT5G25380.3 35.372 376 221 10 51 415 59 423 1.12e-57 196
Msa0717900 AT5G25380.1 35.372 376 221 10 51 415 59 423 1.12e-57 196
Msa0717900 AT5G25380.4 34.656 378 227 9 51 415 59 429 3.25e-57 194
Msa0717900 AT5G25380.2 35.310 371 218 10 51 410 59 418 1.02e-56 192
Msa0717900 AT5G11300.1 39.458 332 184 9 100 416 94 423 3.34e-56 192
Msa0717900 AT5G43080.2 37.931 261 159 3 157 415 73 332 9.93e-56 188
Msa0717900 AT5G06150.2 36.280 328 163 9 27 329 30 336 2.45e-54 184
Msa0717900 AT1G44110.1 36.691 278 168 4 146 416 169 445 4.22e-54 187
Msa0717900 AT5G43080.1 37.218 266 159 4 157 415 73 337 1.55e-53 182
Msa0717900 AT1G47210.2 39.179 268 153 5 157 415 88 354 4.39e-53 182
Msa0717900 AT1G15570.1 39.700 267 153 4 156 415 173 438 1.54e-52 182
Msa0717900 AT1G80370.1 39.326 267 154 4 156 415 182 447 2.01e-52 182
Msa0717900 AT5G11300.2 41.754 285 149 9 100 369 94 376 1.27e-51 179
Msa0717900 AT1G47220.1 39.552 268 152 5 157 415 42 308 2.30e-51 176
Msa0717900 AT1G47230.1 36.154 260 157 4 165 415 88 347 6.60e-48 168
Msa0717900 AT1G47230.2 36.015 261 157 5 165 415 88 348 3.53e-46 163
Msa0717900 AT1G34460.2 31.650 297 156 6 27 319 142 395 7.90e-37 140
Msa0717900 AT1G34460.4 31.650 297 156 6 27 319 142 395 7.90e-37 140
Msa0717900 AT1G34460.9 30.675 326 168 9 9 319 102 384 1.84e-36 139
Msa0717900 AT1G34460.6 31.333 300 156 7 27 319 142 398 2.77e-36 139
Msa0717900 AT1G34460.3 31.333 300 156 7 27 319 142 398 2.77e-36 139
Msa0717900 AT1G34460.8 31.333 300 156 7 27 319 142 398 2.77e-36 139
Msa0717900 AT1G34460.1 31.333 300 156 7 27 319 142 398 2.77e-36 139
Msa0717900 AT1G34460.5 31.333 300 156 7 27 319 142 398 3.70e-36 139
Msa0717900 AT1G34460.7 31.333 300 156 7 27 319 142 398 3.99e-36 139
Msa0717900 AT1G14750.1 33.696 184 119 2 203 383 385 568 7.62e-21 95.5
Msa0717900 AT1G14750.3 33.696 184 119 2 203 383 385 568 9.29e-21 95.1
Msa0717900 AT1G14750.2 33.696 184 119 2 203 383 217 400 1.67e-20 93.6
Msa0717900 AT1G47210.1 43.810 105 55 3 157 258 88 191 3.19e-20 88.6
Msa0717900 AT1G14750.4 33.696 184 118 3 203 383 217 399 2.52e-19 89.7

Find 102 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAATTAACTTTCATAAA+TGG 0.119270 5_1:-11828151 Msa0717900:three_prime_UTR
CAGAGAATGCTCTAGTTTAA+TGG 0.170801 5_1:-11828333 Msa0717900:CDS
CCATTTCCAGAACTTCTTTC+CGG 0.210345 5_1:+11829459 None:intergenic
TTTCATGAGAAGGTTCTTAA+AGG 0.288446 5_1:-11829120 Msa0717900:CDS
GGGTGTGATTAATCAGAATT+TGG 0.301953 5_1:-11831530 Msa0717900:CDS
AAATCAAGTTCAAATGGATT+TGG 0.319295 5_1:-11830714 Msa0717900:CDS
AACAATTAACTTTCATAAAT+GGG 0.326556 5_1:-11828150 Msa0717900:three_prime_UTR
TGGTTTAGTGGCAATGCTTT+TGG 0.341737 5_1:-11829552 Msa0717900:CDS
GTTCCCATTGAACATAATAA+TGG 0.345729 5_1:-11827966 Msa0717900:three_prime_UTR
CTGTGTTTCACCAAACTATA+TGG 0.349277 5_1:-11829933 Msa0717900:CDS
CATTTCCAGAACTTCTTTCC+GGG 0.354928 5_1:+11829460 None:intergenic
ATTTCCATTATTATGTTCAA+TGG 0.354955 5_1:+11827962 None:intergenic
GCTGGGACAGGGAAACTTAC+AGG 0.367597 5_1:-11828293 Msa0717900:CDS
GCTTCAGTTGGTTGGTTTAG+TGG 0.367934 5_1:-11829564 Msa0717900:CDS
TGAAAGGATGAGGGCTATAC+TGG 0.375569 5_1:-11829891 Msa0717900:CDS
TTCTCCAGAAGAAAACTTGC+TGG 0.385990 5_1:+11828218 None:intergenic
ATGGGAATTTACTAATACTA+AGG 0.400084 5_1:-11828090 Msa0717900:three_prime_UTR
AATCAAACCTTCAAAATTTG+TGG 0.408902 5_1:+11831699 None:intergenic
AGTTGAGATGGAGGATATCA+TGG 0.409043 5_1:-11830483 Msa0717900:CDS
TTGGCAAAATCAAGTTCAAA+TGG 0.410685 5_1:-11830720 Msa0717900:CDS
TGCTCTAAAGCCATTGGCAC+TGG 0.419967 5_1:+11830645 None:intergenic
GCAAGAGGGTCATTTGCATC+AGG 0.421294 5_1:+11830434 None:intergenic
TAAGCAACTTGGGTTGCAAT+GGG 0.430023 5_1:-11828114 Msa0717900:three_prime_UTR
GGGGTGTCAATGTCCATAAC+AGG 0.441867 5_1:+11830455 None:intergenic
TCTGTTTGCTCTAAAGCCAT+TGG 0.446717 5_1:+11830639 None:intergenic
TTTCCATTATTATGTTCAAT+GGG 0.449092 5_1:+11827963 None:intergenic
CTAGTGATGGGTCGATGAAC+CGG 0.449551 5_1:+11831318 None:intergenic
TGAGAAGAAACAAGCGGATC+CGG 0.456269 5_1:-11831337 Msa0717900:CDS
CTTATAGGAGGAAGTTGAGA+TGG 0.464867 5_1:-11830495 Msa0717900:intron
AATTGCTGTGCCATATAGTT+TGG 0.468094 5_1:+11829923 None:intergenic
TATCATGGAAGAGCCTGTTA+TGG 0.468278 5_1:-11830468 Msa0717900:CDS
TCTGGAGAACGAGTTGTAGC+TGG 0.469456 5_1:-11828204 Msa0717900:exon
GGGTTAGATTCTAGAAAGGT+TGG 0.473549 5_1:-11831571 Msa0717900:CDS
ATCAAACCTTCAAAATTTGT+GGG 0.477220 5_1:+11831700 None:intergenic
TTGACATTAATGAAAGGATG+AGG 0.477955 5_1:-11829901 Msa0717900:CDS
GGCACTGGCTGATCCTCCAC+TGG 0.480548 5_1:+11830660 None:intergenic
GAGTTGATCTTCAGAGTAGT+TGG 0.480770 5_1:+11828806 None:intergenic
GTTGACTTTCACAAGAAGGC+TGG 0.486106 5_1:-11828311 Msa0717900:CDS
TTTCACAAGAAGGCTGGGAC+AGG 0.486235 5_1:-11828305 Msa0717900:CDS
AACTTGGGTTGCAATGGGGA+TGG 0.488491 5_1:-11828109 Msa0717900:three_prime_UTR
ACAGCTCAATGCACTATGTA+TGG 0.490108 5_1:-11828864 Msa0717900:CDS
AAGAATGTTGTAAGCAACTT+GGG 0.494197 5_1:-11828124 Msa0717900:three_prime_UTR
CCGGAAAGAAGTTCTGGAAA+TGG 0.494858 5_1:-11829459 Msa0717900:intron
GGGCAAAACAGAAGAGCATT+GGG 0.497902 5_1:-11831550 Msa0717900:CDS
TGGAAGATCCTAAAAGAAGA+AGG 0.500448 5_1:+11831805 None:intergenic
AGGAGGGTTAGATTCTAGAA+AGG 0.500876 5_1:-11831575 Msa0717900:CDS
GGTTAGATTCTAGAAAGGTT+GGG 0.502394 5_1:-11831570 Msa0717900:CDS
TAAGAATGTTGTAAGCAACT+TGG 0.502923 5_1:-11828125 Msa0717900:three_prime_UTR
ATACACCCGGAAAGAAGTTC+TGG 0.504153 5_1:-11829465 Msa0717900:CDS
ACTTGGGTTGCAATGGGGAT+GGG 0.504185 5_1:-11828108 Msa0717900:three_prime_UTR
ACTGGTTGACTGGCTTATTG+AGG 0.508362 5_1:-11829873 Msa0717900:intron
TGGGCAAAACAGAAGAGCAT+TGG 0.511695 5_1:-11831551 Msa0717900:CDS
AACTACCAAAAGGTCAAACT+TGG 0.515338 5_1:-11830739 Msa0717900:CDS
AGAAAGAAGCTTCAGTTGGT+TGG 0.515982 5_1:-11829572 Msa0717900:CDS
AATCAGAATTTGGTTGTGGA+AGG 0.518311 5_1:-11831520 Msa0717900:CDS
TGATCTGATTCACTATGCAT+TGG 0.523177 5_1:+11830615 None:intergenic
ATCAATTCCTCACCTAGTGA+TGG 0.523848 5_1:+11831305 None:intergenic
AATGGTTGACTTTCACAAGA+AGG 0.528684 5_1:-11828315 Msa0717900:CDS
GCAGCGGCAGCTAGTTGAGA+AGG 0.533466 5_1:+11828894 None:intergenic
TTGTTAACAACACAAGGATA+AGG 0.536421 5_1:+11831493 None:intergenic
ATAGGAGGAAGTTGAGATGG+AGG 0.543444 5_1:-11830492 Msa0717900:intron
CGGTTCATCGACCCATCACT+AGG 0.545956 5_1:-11831317 Msa0717900:intron
GAACCTTCTCATGAAAACAT+AGG 0.546868 5_1:+11829127 None:intergenic
GATTAATCAGAATTTGGTTG+TGG 0.548543 5_1:-11831524 Msa0717900:CDS
AATCATTAGTAGCTAAGCTA+TGG 0.551986 5_1:+11828181 None:intergenic
ATCCTTGTGTTGTTAACAAG+AGG 0.554542 5_1:-11831489 Msa0717900:CDS
TGAGGGCTATACTGGTTGAC+TGG 0.555400 5_1:-11829883 Msa0717900:CDS
GGAGGATCAGCCAGTGCCAA+TGG 0.555755 5_1:-11830655 Msa0717900:CDS
CTCTTACTACAGAAAAGTTG+AGG 0.560855 5_1:-11830384 Msa0717900:intron
AGCAATTTGACATTAATGAA+AGG 0.565905 5_1:-11829907 Msa0717900:CDS
TCCTTGTGTTGTTAACAAGA+GGG 0.566377 5_1:-11831488 Msa0717900:CDS
TTGAATAGGGAACTACCAAA+AGG 0.566910 5_1:-11830749 Msa0717900:intron
CAAGAGGGTCATTTGCATCA+GGG 0.569803 5_1:+11830435 None:intergenic
TTGACTTTCACAAGAAGGCT+GGG 0.569949 5_1:-11828310 Msa0717900:CDS
GCATAGTGAATCAGATCAGA+TGG 0.570421 5_1:-11830610 Msa0717900:intron
GAAGTTTCAGTGCCTGTGGT+TGG 0.581724 5_1:-11829515 Msa0717900:CDS
GTAAGCAACTTGGGTTGCAA+TGG 0.583489 5_1:-11828115 Msa0717900:three_prime_UTR
GGTAAGAAAGAAGCTTCAGT+TGG 0.588907 5_1:-11829576 Msa0717900:CDS
CTCATGAAAACATAGGCTGT+CGG 0.589074 5_1:+11829134 None:intergenic
TCAATTCCTCACCTAGTGAT+GGG 0.589190 5_1:+11831306 None:intergenic
TGACATTAATGAAAGGATGA+GGG 0.591362 5_1:-11829900 Msa0717900:CDS
CATGAGAAGGTTCTTAAAGG+CGG 0.594323 5_1:-11829117 Msa0717900:CDS
GGAAGATCCTAAAAGAAGAA+GGG 0.596454 5_1:+11831806 None:intergenic
AAGAGGGTCATTTGCATCAG+GGG 0.596917 5_1:+11830436 None:intergenic
ATATATTCAGCAACTGCAAG+AGG 0.601924 5_1:+11830419 None:intergenic
TCAAACCTTCAAAATTTGTG+GGG 0.605336 5_1:+11831701 None:intergenic
GCCCTCTTGTTAACAACACA+AGG 0.607827 5_1:+11831487 None:intergenic
GACAAGTAAAACACTGAGTG+AGG 0.608578 5_1:+11828057 None:intergenic
AGAATTAGATCTCCAACCAC+AGG 0.618555 5_1:+11829503 None:intergenic
TATCAGACAGAGCATACACC+CGG 0.634548 5_1:-11829478 Msa0717900:CDS
AGTGGAGTAAGACATGTGAA+TGG 0.637958 5_1:-11828833 Msa0717900:CDS
TTCACAAGAAGGCTGGGACA+GGG 0.640634 5_1:-11828304 Msa0717900:CDS
TGAGGAAGTTTCAGTGCCTG+TGG 0.654299 5_1:-11829519 Msa0717900:CDS
TATATTCAGCAACTGCAAGA+GGG 0.656026 5_1:+11830420 None:intergenic
GGAAACTTACAGGAGCACAT+AGG 0.667527 5_1:-11828283 Msa0717900:CDS
TGATGAACACAAGCCAGTGG+AGG 0.670864 5_1:-11830673 Msa0717900:CDS
GAAACAATGTCTCATGCATG+AGG 0.677202 5_1:+11829642 None:intergenic
CTATGTATGGTGTCAAACAG+TGG 0.683237 5_1:-11828851 Msa0717900:CDS
TTGAGCTGTATAGACAGCAG+CGG 0.686693 5_1:+11828878 None:intergenic
TGATGATGAACACAAGCCAG+TGG 0.720589 5_1:-11830676 Msa0717900:CDS
TGTTTGTGAGAAGAAACAAG+CGG 0.747744 5_1:-11831343 Msa0717900:CDS
AAGCAACTTGGGTTGCAATG+GGG 0.774444 5_1:-11828113 Msa0717900:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGTTATGATAAAAAAAAAA+TGG + chr5_1:11830772-11830791 None:intergenic 10.0%
!! AAAGATTGAAAATTTCAAAA+TGG - chr5_1:11828147-11828166 Msa0717900:three_prime_UTR 15.0%
!! AAGATTGAAAATTTCAAAAT+GGG - chr5_1:11828148-11828167 Msa0717900:three_prime_UTR 15.0%
!!! TTAATTGTTTTTGTGATAAT+AGG - chr5_1:11828215-11828234 Msa0717900:CDS 15.0%
!!! AATATCTTTGTTTTTTCTTA+TGG + chr5_1:11828594-11828613 None:intergenic 15.0%
!! TATTAGCTAATTAAATAAAC+AGG + chr5_1:11829240-11829259 None:intergenic 15.0%
!! AAAACAATAATTGAATGTAA+TGG - chr5_1:11829552-11829571 Msa0717900:CDS 15.0%
!!! AAAATTCAAGAGTATAAATT+TGG + chr5_1:11829750-11829769 None:intergenic 15.0%
!!! ATTTGTTATTGAAATTTGAT+TGG + chr5_1:11829831-11829850 None:intergenic 15.0%
!! ACTATATAAAAAAAAGGTTA+TGG + chr5_1:11831397-11831416 None:intergenic 15.0%
!! AAACAATTAACTTTCATAAA+TGG - chr5_1:11831659-11831678 Msa0717900:intron 15.0%
!! AACAATTAACTTTCATAAAT+GGG - chr5_1:11831660-11831679 Msa0717900:intron 15.0%
!!! TGTGAATTTGTTTTCTTTTT+TGG - chr5_1:11828397-11828416 Msa0717900:intron 20.0%
!!! TTGTTTTCTTTTTTGGTTTT+TGG - chr5_1:11828404-11828423 Msa0717900:intron 20.0%
!! GAAATTCAAATTACACTAAA+GGG + chr5_1:11828559-11828578 None:intergenic 20.0%
!! AGAAATTCAAATTACACTAA+AGG + chr5_1:11828560-11828579 None:intergenic 20.0%
!! TTTAGTGTAATTTGAATTTC+TGG - chr5_1:11828559-11828578 Msa0717900:intron 20.0%
!! TCTTGATTTACTGTTATATT+AGG - chr5_1:11828907-11828926 Msa0717900:CDS 20.0%
!! CAACAACTAAAATTTGAAAA+AGG + chr5_1:11829279-11829298 None:intergenic 20.0%
!!! CATTTGGATTTTATTTCAAA+TGG - chr5_1:11829486-11829505 Msa0717900:CDS 20.0%
!! TTTCAGAATTCCAATTAATA+TGG - chr5_1:11829796-11829815 Msa0717900:intron 20.0%
!! ATTAATCGTATATTTAATCC+AGG + chr5_1:11830019-11830038 None:intergenic 20.0%
!!! ATTTGTGTGTAAAATTTTGT+AGG - chr5_1:11830612-11830631 Msa0717900:CDS 20.0%
!! ATGATAAAAAAAAAATGGCA+TGG + chr5_1:11830767-11830786 None:intergenic 20.0%
!! GTATTTGTAATTAGTAACTA+TGG + chr5_1:11830801-11830820 None:intergenic 20.0%
!! TTTCCATTATTATGTTCAAT+GGG + chr5_1:11831850-11831869 None:intergenic 20.0%
!! ATTTCCATTATTATGTTCAA+TGG + chr5_1:11831851-11831870 None:intergenic 20.0%
! TGAAGATCCTTGAAAAAAAA+TGG + chr5_1:11827976-11827995 None:intergenic 25.0%
!!! GATCTTCCATTTTTTTTTGT+GGG - chr5_1:11828019-11828038 Msa0717900:three_prime_UTR 25.0%
!! AGAAAAAATGAAGTTTTCTG+AGG - chr5_1:11828067-11828086 Msa0717900:three_prime_UTR 25.0%
! ATCAAACCTTCAAAATTTGT+GGG + chr5_1:11828113-11828132 None:intergenic 25.0%
! AATCAAACCTTCAAAATTTG+TGG + chr5_1:11828114-11828133 None:intergenic 25.0%
!!! ATTGTTTTTGTGATAATAGG+AGG - chr5_1:11828218-11828237 Msa0717900:CDS 25.0%
!!! TTGTTTTTGTGATAATAGGA+GGG - chr5_1:11828219-11828238 Msa0717900:CDS 25.0%
! ATTCACAATCACAAAAAGAA+GGG + chr5_1:11828384-11828403 None:intergenic 25.0%
! AATTCACAATCACAAAAAGA+AGG + chr5_1:11828385-11828404 None:intergenic 25.0%
!!! TGGTTTTTGGTTTTGATTTT+TGG - chr5_1:11828417-11828436 Msa0717900:intron 25.0%
!! GAATTGATGATTTAAGTTTC+TGG - chr5_1:11828520-11828539 Msa0717900:intron 25.0%
!! TGTAATTTGAATTTCTGGAT+TGG - chr5_1:11828564-11828583 Msa0717900:intron 25.0%
! TTGAGATAAGTGTTTGAATT+TGG - chr5_1:11828612-11828631 Msa0717900:intron 25.0%
!!! ATGCTACATAGTTTTTGATT+TGG + chr5_1:11828650-11828669 None:intergenic 25.0%
!! AAGTTTTGCTAAAATGATGA+TGG - chr5_1:11828879-11828898 Msa0717900:CDS 25.0%
! TGATTTACTGTTATATTAGG+AGG - chr5_1:11828910-11828929 Msa0717900:CDS 25.0%
!! AAATCAAGTTCAAATGGATT+TGG - chr5_1:11829096-11829115 Msa0717900:intron 25.0%
! GAAAGAATTGCCATATTAAT+TGG + chr5_1:11829809-11829828 None:intergenic 25.0%
! AGCAATTTGACATTAATGAA+AGG - chr5_1:11829903-11829922 Msa0717900:CDS 25.0%
! AGTAAGCATTATCCATATTT+GGG + chr5_1:11830108-11830127 None:intergenic 25.0%
! AAGTAAGCATTATCCATATT+TGG + chr5_1:11830109-11830128 None:intergenic 25.0%
!! CAATCTTATAGACAGATTTT+TGG - chr5_1:11830198-11830217 Msa0717900:intron 25.0%
! CACAAATGCTATAAATGTAA+AGG + chr5_1:11830409-11830428 None:intergenic 25.0%
! CTTTACATTTATAGCATTTG+TGG - chr5_1:11830407-11830426 Msa0717900:CDS 25.0%
!!! TCATCGGAATTTTTAGAAAA+AGG + chr5_1:11830580-11830599 None:intergenic 25.0%
! AAATGGCATGGAAATATATT+AGG + chr5_1:11830755-11830774 None:intergenic 25.0%
! TGAGTTATGATATGATTAGA+TGG - chr5_1:11831197-11831216 Msa0717900:intron 25.0%
! ATATAACAAGATGACATCAT+AGG - chr5_1:11831326-11831345 Msa0717900:CDS 25.0%
! TATAACAAGATGACATCATA+GGG - chr5_1:11831327-11831346 Msa0717900:CDS 25.0%
! ATGGGAATTTACTAATACTA+AGG - chr5_1:11831720-11831739 Msa0717900:CDS 25.0%
!!! CTCTCTTCCATTTTTTTTCA+AGG - chr5_1:11827966-11827985 Msa0717900:three_prime_UTR 30.0%
!!! GGATCTTCCATTTTTTTTTG+TGG - chr5_1:11828018-11828037 Msa0717900:three_prime_UTR 30.0%
ACACAACCCACAAAAAAAAA+TGG + chr5_1:11828028-11828047 None:intergenic 30.0%
TCAAACCTTCAAAATTTGTG+GGG + chr5_1:11828112-11828131 None:intergenic 30.0%
GATTAATCAGAATTTGGTTG+TGG - chr5_1:11828286-11828305 Msa0717900:CDS 30.0%
TTGTTAACAACACAAGGATA+AGG + chr5_1:11828320-11828339 None:intergenic 30.0%
!!! TGGTTTTGATTTTTGGTTTG+TGG - chr5_1:11828424-11828443 Msa0717900:intron 30.0%
!!! GGTTTTGATTTTTGGTTTGT+GGG - chr5_1:11828425-11828444 Msa0717900:intron 30.0%
!! GATGATTTAAGTTTCTGGTT+TGG - chr5_1:11828525-11828544 Msa0717900:intron 30.0%
! GCATTGACAATTCAGATTAT+TGG - chr5_1:11828666-11828685 Msa0717900:intron 30.0%
! TTTAACCACATCTGATAATG+TGG + chr5_1:11828721-11828740 None:intergenic 30.0%
!! TCATTTTAGCAAAACTTGCA+TGG + chr5_1:11828876-11828895 None:intergenic 30.0%
! GGTAGAATCTTTTATTCCTT+TGG - chr5_1:11828974-11828993 Msa0717900:intron 30.0%
ATGTAGCAAAATTTCACCAA+AGG + chr5_1:11828993-11829012 None:intergenic 30.0%
! GAAATTTTGCTACATTGTAC+AGG - chr5_1:11828998-11829017 Msa0717900:intron 30.0%
CACTCAAAATCTTAGTCAAA+AGG + chr5_1:11829030-11829049 None:intergenic 30.0%
!! TTGACTAAGATTTTGAGTGT+TGG - chr5_1:11829031-11829050 Msa0717900:intron 30.0%
!! TGACTAAGATTTTGAGTGTT+GGG - chr5_1:11829032-11829051 Msa0717900:intron 30.0%
TTGGCAAAATCAAGTTCAAA+TGG - chr5_1:11829090-11829109 Msa0717900:intron 30.0%
AGAACACTTATCTGATCATT+TGG - chr5_1:11829470-11829489 Msa0717900:CDS 30.0%
AAATGCTTCCTTTGACATTA+GGG + chr5_1:11829673-11829692 None:intergenic 30.0%
TAAATGCTTCCTTTGACATT+AGG + chr5_1:11829674-11829693 None:intergenic 30.0%
TTGACATTAATGAAAGGATG+AGG - chr5_1:11829909-11829928 Msa0717900:CDS 30.0%
TGACATTAATGAAAGGATGA+GGG - chr5_1:11829910-11829929 Msa0717900:CDS 30.0%
! CAAGTCAATAGCATTTTTCA+AGG + chr5_1:11829993-11830012 None:intergenic 30.0%
AATCGTATATTTAATCCAGG+AGG + chr5_1:11830016-11830035 None:intergenic 30.0%
! ATTTAATTTCCCCCCAAATA+TGG - chr5_1:11830093-11830112 Msa0717900:intron 30.0%
TAAGCATTATCCATATTTGG+GGG + chr5_1:11830106-11830125 None:intergenic 30.0%
GTAAGCATTATCCATATTTG+GGG + chr5_1:11830107-11830126 None:intergenic 30.0%
GTGACATTGAAAATCTTTGT+GGG - chr5_1:11830487-11830506 Msa0717900:CDS 30.0%
CTACTGCAATATAAAGGTTT+AGG + chr5_1:11830551-11830570 None:intergenic 30.0%
AAATCTCAGTTACTTGTCAT+CGG + chr5_1:11830596-11830615 None:intergenic 30.0%
! GTGTAAAATTTTGTAGGAGA+AGG - chr5_1:11830618-11830637 Msa0717900:CDS 30.0%
TTTCATGAGAAGGTTCTTAA+AGG - chr5_1:11830690-11830709 Msa0717900:CDS 30.0%
AATCATTAGTAGCTAAGCTA+TGG + chr5_1:11831632-11831651 None:intergenic 30.0%
TAAGAATGTTGTAAGCAACT+TGG - chr5_1:11831685-11831704 Msa0717900:intron 30.0%
AAGAATGTTGTAAGCAACTT+GGG - chr5_1:11831686-11831705 Msa0717900:intron 30.0%
GTTCCCATTGAACATAATAA+TGG - chr5_1:11831844-11831863 Msa0717900:five_prime_UTR 30.0%
GGAAGATCCTAAAAGAAGAA+GGG + chr5_1:11828007-11828026 None:intergenic 35.0%
TGGAAGATCCTAAAAGAAGA+AGG + chr5_1:11828008-11828027 None:intergenic 35.0%
! AACAACCCCACAAATTTTGA+AGG - chr5_1:11828104-11828123 Msa0717900:three_prime_UTR 35.0%
! GGTTAGATTCTAGAAAGGTT+GGG - chr5_1:11828240-11828259 Msa0717900:CDS 35.0%
GGGTGTGATTAATCAGAATT+TGG - chr5_1:11828280-11828299 Msa0717900:CDS 35.0%
AATCAGAATTTGGTTGTGGA+AGG - chr5_1:11828290-11828309 Msa0717900:CDS 35.0%
! ATCCTTGTGTTGTTAACAAG+AGG - chr5_1:11828321-11828340 Msa0717900:CDS 35.0%
! TCCTTGTGTTGTTAACAAGA+GGG - chr5_1:11828322-11828341 Msa0717900:CDS 35.0%
TGTTTGTGAGAAGAAACAAG+CGG - chr5_1:11828467-11828486 Msa0717900:intron 35.0%
GTGACATGTAGATGTAGATA+CGG + chr5_1:11828780-11828799 None:intergenic 35.0%
GTATCTACATCTACATGTCA+CGG - chr5_1:11828779-11828798 Msa0717900:intron 35.0%
CACAAAAACATCTAATGCTG+AGG - chr5_1:11828953-11828972 Msa0717900:CDS 35.0%
!! GACTAAGATTTTGAGTGTTG+GGG - chr5_1:11829033-11829052 Msa0717900:intron 35.0%
TGTTGGGGTCAATTTGAATA+GGG - chr5_1:11829048-11829067 Msa0717900:intron 35.0%
TTGAATAGGGAACTACCAAA+AGG - chr5_1:11829061-11829080 Msa0717900:intron 35.0%
AACTACCAAAAGGTCAAACT+TGG - chr5_1:11829071-11829090 Msa0717900:intron 35.0%
! TTTTGCCAAGTTTGACCTTT+TGG + chr5_1:11829079-11829098 None:intergenic 35.0%
TGATCTGATTCACTATGCAT+TGG + chr5_1:11829198-11829217 None:intergenic 35.0%
! AGTTGTTGACTGCAAGTAAT+TGG - chr5_1:11829291-11829310 Msa0717900:intron 35.0%
!! CTGCAAGTAATTGGTCTTAT+AGG - chr5_1:11829300-11829319 Msa0717900:intron 35.0%
!! CAAGTAATTGGTCTTATAGG+AGG - chr5_1:11829303-11829322 Msa0717900:intron 35.0%
TATATTCAGCAACTGCAAGA+GGG + chr5_1:11829393-11829412 None:intergenic 35.0%
ATATATTCAGCAACTGCAAG+AGG + chr5_1:11829394-11829413 None:intergenic 35.0%
CTCTTACTACAGAAAAGTTG+AGG - chr5_1:11829426-11829445 Msa0717900:intron 35.0%
CAGAAAAGTTGAGGTACATT+TGG - chr5_1:11829435-11829454 Msa0717900:intron 35.0%
CTAAAATTTGAAGGTGGATG+TGG + chr5_1:11829619-11829638 None:intergenic 35.0%
!! TCCACCTTCAAATTTTAGTG+TGG - chr5_1:11829621-11829640 Msa0717900:CDS 35.0%
ACCACACTAAAATTTGAAGG+TGG + chr5_1:11829625-11829644 None:intergenic 35.0%
GCAACCACACTAAAATTTGA+AGG + chr5_1:11829628-11829647 None:intergenic 35.0%
CTGTGTTTCACCAAACTATA+TGG - chr5_1:11829877-11829896 Msa0717900:CDS 35.0%
AATTGCTGTGCCATATAGTT+TGG + chr5_1:11829890-11829909 None:intergenic 35.0%
TCAAGGTATAGTGATTCAGA+AGG + chr5_1:11829976-11829995 None:intergenic 35.0%
AAGCATTATCCATATTTGGG+GGG + chr5_1:11830105-11830124 None:intergenic 35.0%
ATTTGTCATGCACCTGAAAA+GGG + chr5_1:11830144-11830163 None:intergenic 35.0%
AATTTGTCATGCACCTGAAA+AGG + chr5_1:11830145-11830164 None:intergenic 35.0%
!! ATTTTTGGAAAAGCAGTCTG+TGG - chr5_1:11830213-11830232 Msa0717900:intron 35.0%
!!! GGACTGAAGTTTTAAAACCT+TGG + chr5_1:11830451-11830470 None:intergenic 35.0%
GGTGACATTGAAAATCTTTG+TGG - chr5_1:11830486-11830505 Msa0717900:CDS 35.0%
! AATTTTGTAGGAGAAGGTGA+TGG - chr5_1:11830624-11830643 Msa0717900:CDS 35.0%
GAACCTTCTCATGAAAACAT+AGG + chr5_1:11830686-11830705 None:intergenic 35.0%
! TCTAGTTCCAACTAAATCGA+AGG - chr5_1:11831055-11831074 Msa0717900:intron 35.0%
GAATAAGCCTTCGATTTAGT+TGG + chr5_1:11831065-11831084 None:intergenic 35.0%
AAAACTATGCGCAATTGTGT+TGG - chr5_1:11831097-11831116 Msa0717900:intron 35.0%
! CAGAGAATGCTCTAGTTTAA+TGG - chr5_1:11831477-11831496 Msa0717900:intron 35.0%
! AATGGTTGACTTTCACAAGA+AGG - chr5_1:11831495-11831514 Msa0717900:CDS 35.0%
! TTTCACGCCCTTCTTCTTTT+AGG - chr5_1:11827997-11828016 Msa0717900:three_prime_UTR 40.0%
! AGGAGGGTTAGATTCTAGAA+AGG - chr5_1:11828235-11828254 Msa0717900:CDS 40.0%
! GGGTTAGATTCTAGAAAGGT+TGG - chr5_1:11828239-11828258 Msa0717900:CDS 40.0%
TCAATTCCTCACCTAGTGAT+GGG + chr5_1:11828507-11828526 None:intergenic 40.0%
ATCAATTCCTCACCTAGTGA+TGG + chr5_1:11828508-11828527 None:intergenic 40.0%
GTGTTGGGGTCAATTTGAAT+AGG - chr5_1:11829047-11829066 Msa0717900:intron 40.0%
!! TCTGTTTGCTCTAAAGCCAT+TGG + chr5_1:11829174-11829193 None:intergenic 40.0%
GCATAGTGAATCAGATCAGA+TGG - chr5_1:11829200-11829219 Msa0717900:intron 40.0%
CTTATAGGAGGAAGTTGAGA+TGG - chr5_1:11829315-11829334 Msa0717900:intron 40.0%
AGTTGAGATGGAGGATATCA+TGG - chr5_1:11829327-11829346 Msa0717900:intron 40.0%
TATCATGGAAGAGCCTGTTA+TGG - chr5_1:11829342-11829361 Msa0717900:intron 40.0%
AACACATGTCAGTGTGACAA+TGG + chr5_1:11829584-11829603 None:intergenic 40.0%
! GTCACACTGACATGTGTTTT+TGG - chr5_1:11829586-11829605 Msa0717900:CDS 40.0%
! GTTTTGCATGAACCCTTTTC+AGG - chr5_1:11830129-11830148 Msa0717900:intron 40.0%
GAAACAATGTCTCATGCATG+AGG + chr5_1:11830171-11830190 None:intergenic 40.0%
GGTAAGAAAGAAGCTTCAGT+TGG - chr5_1:11830234-11830253 Msa0717900:intron 40.0%
AGAAAGAAGCTTCAGTTGGT+TGG - chr5_1:11830238-11830257 Msa0717900:intron 40.0%
! TGGTTTAGTGGCAATGCTTT+TGG - chr5_1:11830258-11830277 Msa0717900:intron 40.0%
AGAATTAGATCTCCAACCAC+AGG + chr5_1:11830310-11830329 None:intergenic 40.0%
CATTTCCAGAACTTCTTTCC+GGG + chr5_1:11830353-11830372 None:intergenic 40.0%
CCATTTCCAGAACTTCTTTC+CGG + chr5_1:11830354-11830373 None:intergenic 40.0%
ACCTTGGTTGTGATATTGAG+TGG + chr5_1:11830435-11830454 None:intergenic 40.0%
TCTGCGCTACTGCAATATAA+AGG + chr5_1:11830557-11830576 None:intergenic 40.0%
CTCATGAAAACATAGGCTGT+CGG + chr5_1:11830679-11830698 None:intergenic 40.0%
! CAGCCTATGTTTTCATGAGA+AGG - chr5_1:11830680-11830699 Msa0717900:CDS 40.0%
CATGAGAAGGTTCTTAAAGG+CGG - chr5_1:11830693-11830712 Msa0717900:CDS 40.0%
ACAGCTCAATGCACTATGTA+TGG - chr5_1:11830946-11830965 Msa0717900:intron 40.0%
! CTATGTATGGTGTCAAACAG+TGG - chr5_1:11830959-11830978 Msa0717900:intron 40.0%
AGTGGAGTAAGACATGTGAA+TGG - chr5_1:11830977-11830996 Msa0717900:intron 40.0%
! GAGTTGATCTTCAGAGTAGT+TGG + chr5_1:11831007-11831026 None:intergenic 40.0%
GAGATCAAAAGACTATGCGT+CGG - chr5_1:11831250-11831269 Msa0717900:intron 40.0%
TTGACTTTCACAAGAAGGCT+GGG - chr5_1:11831500-11831519 Msa0717900:CDS 40.0%
! TGAACCAGCAAGTTTTCTTC+TGG - chr5_1:11831588-11831607 Msa0717900:intron 40.0%
TTCTCCAGAAGAAAACTTGC+TGG + chr5_1:11831595-11831614 None:intergenic 40.0%
! TAAGCAACTTGGGTTGCAAT+GGG - chr5_1:11831696-11831715 Msa0717900:intron 40.0%
GACAAGTAAAACACTGAGTG+AGG + chr5_1:11831756-11831775 None:intergenic 40.0%
! TGGGCAAAACAGAAGAGCAT+TGG - chr5_1:11828259-11828278 Msa0717900:CDS 45.0%
!! GGGCAAAACAGAAGAGCATT+GGG - chr5_1:11828260-11828279 Msa0717900:CDS 45.0%
GCCCTCTTGTTAACAACACA+AGG + chr5_1:11828326-11828345 None:intergenic 45.0%
!! TTGGTTTGTGGGTGTATCAC+AGG - chr5_1:11828436-11828455 Msa0717900:intron 45.0%
TGAGAAGAAACAAGCGGATC+CGG - chr5_1:11828473-11828492 Msa0717900:intron 45.0%
! CACATCTGATAATGTGGCGT+CGG + chr5_1:11828715-11828734 None:intergenic 45.0%
! TGATGATGAACACAAGCCAG+TGG - chr5_1:11829134-11829153 Msa0717900:CDS 45.0%
ATAGGAGGAAGTTGAGATGG+AGG - chr5_1:11829318-11829337 Msa0717900:intron 45.0%
AAGAGGGTCATTTGCATCAG+GGG + chr5_1:11829377-11829396 None:intergenic 45.0%
CAAGAGGGTCATTTGCATCA+GGG + chr5_1:11829378-11829397 None:intergenic 45.0%
ATTTGAAGGTGGATGTGGAC+AGG + chr5_1:11829614-11829633 None:intergenic 45.0%
TGGTTGAGCCCTAATGTCAA+AGG - chr5_1:11829662-11829681 Msa0717900:CDS 45.0%
TGAAAGGATGAGGGCTATAC+TGG - chr5_1:11829919-11829938 Msa0717900:CDS 45.0%
!! ACTGGTTGACTGGCTTATTG+AGG - chr5_1:11829937-11829956 Msa0717900:CDS 45.0%
!! AATGCTATTGACTTGCCTCC+TGG - chr5_1:11829998-11830017 Msa0717900:intron 45.0%
!! GCTTCAGTTGGTTGGTTTAG+TGG - chr5_1:11830246-11830265 Msa0717900:intron 45.0%
! GCTTTTGGCATGCAAGTATG+AGG - chr5_1:11830273-11830292 Msa0717900:intron 45.0%
TATCAGACAGAGCATACACC+CGG - chr5_1:11830332-11830351 Msa0717900:intron 45.0%
ATACACCCGGAAAGAAGTTC+TGG - chr5_1:11830345-11830364 Msa0717900:intron 45.0%
!! CCGGAAAGAAGTTCTGGAAA+TGG - chr5_1:11830351-11830370 Msa0717900:intron 45.0%
GCCACTCAATATCACAACCA+AGG - chr5_1:11830431-11830450 Msa0717900:CDS 45.0%
! TAGCAGCTCAAGCTGTTTCA+TGG + chr5_1:11830842-11830861 None:intergenic 45.0%
TTGAGCTGTATAGACAGCAG+CGG + chr5_1:11830935-11830954 None:intergenic 45.0%
! GTTGACTTTCACAAGAAGGC+TGG - chr5_1:11831499-11831518 Msa0717900:CDS 45.0%
! GGAAACTTACAGGAGCACAT+AGG - chr5_1:11831527-11831546 Msa0717900:CDS 45.0%
! GTAAGCAACTTGGGTTGCAA+TGG - chr5_1:11831695-11831714 Msa0717900:intron 45.0%
! AAGCAACTTGGGTTGCAATG+GGG - chr5_1:11831697-11831716 Msa0717900:intron 45.0%
!! ATAATAACTATATAAAAAAA+AGG + chr5_1:11831403-11831422 None:intergenic 5.0%
!! CTAGTGATGGGTCGATGAAC+CGG + chr5_1:11828495-11828514 None:intergenic 50.0%
CGACGCCACATTATCAGATG+TGG - chr5_1:11828713-11828732 Msa0717900:intron 50.0%
TGATGAACACAAGCCAGTGG+AGG - chr5_1:11829137-11829156 Msa0717900:CDS 50.0%
!! TGCTCTAAAGCCATTGGCAC+TGG + chr5_1:11829168-11829187 None:intergenic 50.0%
! GGGGTGTCAATGTCCATAAC+AGG + chr5_1:11829358-11829377 None:intergenic 50.0%
GCAAGAGGGTCATTTGCATC+AGG + chr5_1:11829379-11829398 None:intergenic 50.0%
GGTTGCTACATATACCGCTC+TGG - chr5_1:11829642-11829661 Msa0717900:CDS 50.0%
ACATTAGGGCTCAACCAGAG+CGG + chr5_1:11829659-11829678 None:intergenic 50.0%
! TGAGGGCTATACTGGTTGAC+TGG - chr5_1:11829927-11829946 Msa0717900:CDS 50.0%
TGAGGAAGTTTCAGTGCCTG+TGG - chr5_1:11830291-11830310 Msa0717900:intron 50.0%
GAAGTTTCAGTGCCTGTGGT+TGG - chr5_1:11830295-11830314 Msa0717900:intron 50.0%
CAGTCCTCTTGCAGTTTCTG+TGG - chr5_1:11830465-11830484 Msa0717900:CDS 50.0%
GTCACCACAGAAACTGCAAG+AGG + chr5_1:11830472-11830491 None:intergenic 50.0%
! GCTCAAGCTGTTTCATGGTG+AGG + chr5_1:11830837-11830856 None:intergenic 50.0%
TTTCACAAGAAGGCTGGGAC+AGG - chr5_1:11831505-11831524 Msa0717900:CDS 50.0%
TTCACAAGAAGGCTGGGACA+GGG - chr5_1:11831506-11831525 Msa0717900:CDS 50.0%
TCTGGAGAACGAGTTGTAGC+TGG - chr5_1:11831606-11831625 Msa0717900:intron 50.0%
! AACTTGGGTTGCAATGGGGA+TGG - chr5_1:11831701-11831720 Msa0717900:intron 50.0%
! ACTTGGGTTGCAATGGGGAT+GGG - chr5_1:11831702-11831721 Msa0717900:intron 50.0%
CGGTTCATCGACCCATCACT+AGG - chr5_1:11828493-11828512 Msa0717900:intron 55.0%
CATCGACCCATCACTAGGTG+AGG - chr5_1:11828498-11828517 Msa0717900:intron 55.0%
CACGGTGTCTCTGTCATGTC+AGG - chr5_1:11828797-11828816 Msa0717900:intron 55.0%
GCTGGGACAGGGAAACTTAC+AGG - chr5_1:11831517-11831536 Msa0717900:CDS 55.0%
GGAGGATCAGCCAGTGCCAA+TGG - chr5_1:11829155-11829174 Msa0717900:CDS 60.0%
GCAGCGGCAGCTAGTTGAGA+AGG + chr5_1:11830919-11830938 None:intergenic 60.0%
!! GGCACTGGCTGATCCTCCAC+TGG + chr5_1:11829153-11829172 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 11827926 11831906 11827926 ID=Msa0717900;Name=Msa0717900
chr5_1 mRNA 11827926 11831906 11827926 ID=Msa0717900-mRNA-1;Parent=Msa0717900;Name=Msa0717900-mRNA-1;_AED=0.12;_eAED=0.12;_QI=148|1|1|1|1|1|11|282|428
chr5_1 exon 11827926 11828352 11827926 ID=Msa0717900-mRNA-1:exon:4856;Parent=Msa0717900-mRNA-1
chr5_1 exon 11828804 11828982 11828804 ID=Msa0717900-mRNA-1:exon:4855;Parent=Msa0717900-mRNA-1
chr5_1 exon 11829100 11829198 11829100 ID=Msa0717900-mRNA-1:exon:4854;Parent=Msa0717900-mRNA-1
chr5_1 exon 11829460 11829681 11829460 ID=Msa0717900-mRNA-1:exon:4853;Parent=Msa0717900-mRNA-1
chr5_1 exon 11829874 11829963 11829874 ID=Msa0717900-mRNA-1:exon:4852;Parent=Msa0717900-mRNA-1
chr5_1 exon 11830385 11830510 11830385 ID=Msa0717900-mRNA-1:exon:4851;Parent=Msa0717900-mRNA-1
chr5_1 exon 11830611 11830763 11830611 ID=Msa0717900-mRNA-1:exon:4850;Parent=Msa0717900-mRNA-1
chr5_1 exon 11830858 11830903 11830858 ID=Msa0717900-mRNA-1:exon:4849;Parent=Msa0717900-mRNA-1
chr5_1 exon 11831318 11831374 11831318 ID=Msa0717900-mRNA-1:exon:4848;Parent=Msa0717900-mRNA-1
chr5_1 exon 11831478 11831595 11831478 ID=Msa0717900-mRNA-1:exon:4847;Parent=Msa0717900-mRNA-1
chr5_1 exon 11831707 11831906 11831707 ID=Msa0717900-mRNA-1:exon:4846;Parent=Msa0717900-mRNA-1
chr5_1 five_prime_UTR 11831759 11831906 11831759 ID=Msa0717900-mRNA-1:five_prime_utr;Parent=Msa0717900-mRNA-1
chr5_1 CDS 11831707 11831758 11831707 ID=Msa0717900-mRNA-1:cds;Parent=Msa0717900-mRNA-1
chr5_1 CDS 11831478 11831595 11831478 ID=Msa0717900-mRNA-1:cds;Parent=Msa0717900-mRNA-1
chr5_1 CDS 11831318 11831374 11831318 ID=Msa0717900-mRNA-1:cds;Parent=Msa0717900-mRNA-1
chr5_1 CDS 11830858 11830903 11830858 ID=Msa0717900-mRNA-1:cds;Parent=Msa0717900-mRNA-1
chr5_1 CDS 11830611 11830763 11830611 ID=Msa0717900-mRNA-1:cds;Parent=Msa0717900-mRNA-1
chr5_1 CDS 11830385 11830510 11830385 ID=Msa0717900-mRNA-1:cds;Parent=Msa0717900-mRNA-1
chr5_1 CDS 11829874 11829963 11829874 ID=Msa0717900-mRNA-1:cds;Parent=Msa0717900-mRNA-1
chr5_1 CDS 11829460 11829681 11829460 ID=Msa0717900-mRNA-1:cds;Parent=Msa0717900-mRNA-1
chr5_1 CDS 11829100 11829198 11829100 ID=Msa0717900-mRNA-1:cds;Parent=Msa0717900-mRNA-1
chr5_1 CDS 11828804 11828982 11828804 ID=Msa0717900-mRNA-1:cds;Parent=Msa0717900-mRNA-1
chr5_1 CDS 11828208 11828352 11828208 ID=Msa0717900-mRNA-1:cds;Parent=Msa0717900-mRNA-1
chr5_1 three_prime_UTR 11827926 11828207 11827926 ID=Msa0717900-mRNA-1:three_prime_utr;Parent=Msa0717900-mRNA-1
Gene Sequence

>Msa0717900

ATGAAGTTTTCTGAGGAGAAGAATGTTTCTAACAACCCCACAAATTTTGAAGGAGGGTTAGATTCTAGAAAGGTTGGGCAAAACAGAAGAGCATTGGGTGTGATTAATCAGAATTTGGTTGTGGAAGGACGTCCTTATCCTTGTGTTGTTAACAAGAGGGCATTGTCAGAGAGAAATGATGTTTGTGAGAAGAAACAAGCGGATCCGGTTCATCGACCCATCACTAGGAGGTTTGCTGCAAAGATTGCTAGCACAAAAACATCTAATGCTGAGGGAACTACCAAAAGGTCAAACTTGGCAAAATCAAGTTCAAATGGATTTGGAGATTTCATATTTGTTGATGATGAACACAAGCCAGTGGAGGATCAGCCAGTGCCAATGGCTTTAGAGCAAACAGAACCAATGCATAGTGAATCAGATCAGATGGAGGAAGTTGAGATGGAGGATATCATGGAAGAGCCTGTTATGGACATTGACACCCCTGATGCAAATGACCCTCTTGCAGTTGCTGAATATATTGAAGATCTTTTCTCTTACTACAGAAAAGTTGAGAGTACTAGCTGTGTTTCACCAAACTATATGGCACAGCAATTTGACATTAATGAAAGGATGAGGGCTATACTGGTTGACTGGCTTATTGAGGTGCATGACAAATTCGACCTCATGCATGAGACATTGTTTCTCACTGTCAATCTTATAGACAGATTTTTGGAAAAGCAGTCTGTGGTAAGAAAGAAGCTTCAGTTGGTTGGTTTAGTGGCAATGCTTTTGGCATGCAAGTATGAGGAAGTTTCAGTGCCTGTGGTTGGAGATCTAATTCTTATATCAGACAGAGCATACACCCGGAAAGAAGTTCTGGAAATGGAGAAGGTGATGGTCAATGCATTGAAGTTTAACATATCTGTGCCGACAGCCTATGTTTTCATGAGAAGGTTCTTAAAGGCGGCTCAAGCAGACAGAAAACTTGAGCTGCTAGCTTTCTTCTTGATTGAGCTATCTCTTGTAGAATATGCAATGTTGAAGTTCTCTCCTTCTCAACTAGCTGCCGCTGCTGTCTATACAGCTCAATGCACTATGTATGGTGTCAAACAGTGGAGTAAGACATGTGAATGGCACACCAACTACTCTGAAGATCAACTCTTAGAATGCTCTAGTTTAATGGTTGACTTTCACAAGAAGGCTGGGACAGGGAAACTTACAGGAGCACATAGGAAGTATTGCACATCAAAATTTAGCTATACTGCGAAATGTGAACCAGCAAGTTTTCTTCTGGAGAACGAGTTGTAG

Protein sequence

>Msa0717900

MKFSEEKNVSNNPTNFEGGLDSRKVGQNRRALGVINQNLVVEGRPYPCVVNKRALSERNDVCEKKQADPVHRPITRRFAAKIASTKTSNAEGTTKRSNLAKSSSNGFGDFIFVDDEHKPVEDQPVPMALEQTEPMHSESDQMEEVEMEDIMEEPVMDIDTPDANDPLAVAEYIEDLFSYYRKVESTSCVSPNYMAQQFDINERMRAILVDWLIEVHDKFDLMHETLFLTVNLIDRFLEKQSVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDRAYTRKEVLEMEKVMVNALKFNISVPTAYVFMRRFLKAAQADRKLELLAFFLIELSLVEYAMLKFSPSQLAAAAVYTAQCTMYGVKQWSKTCEWHTNYSEDQLLECSSLMVDFHKKAGTGKLTGAHRKYCTSKFSYTAKCEPASFLLENEL*