Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964740 | A0A396HLX6 | 56.481 | 108 | 47 | 0 | 60 | 167 | 48 | 155 | 1.32e-33 | 125 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0964740 | Msa0964840 | 0.842517 | 2.464298e-58 | -8.615850e-47 |
| Msa0964740 | Msa0999550 | 0.800667 | 1.294167e-48 | -8.615850e-47 |
| Msa0964740 | Msa1052360 | 0.801296 | 9.628204e-49 | -8.615850e-47 |
| Msa0964740 | Msa1096210 | 0.807684 | 4.482646e-50 | -8.615850e-47 |
| Msa0964740 | Msa1140640 | 0.807276 | 5.471707e-50 | -8.615850e-47 |
| Msa0964740 | Msa1253450 | 0.804002 | 2.662454e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964740 | MtrunA17_Chr6g0485491 | 56.481 | 108 | 47 | 0 | 60 | 167 | 48 | 155 | 2.54e-37 | 125 |
| Msa0964740 | MtrunA17_Chr6g0485481 | 67.391 | 46 | 15 | 0 | 60 | 105 | 88 | 133 | 2.94e-15 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCTGACCATATAATATT+TGG | 0.148969 | 6_3:-91728726 | None:intergenic |
| GACTGACTCTTCATCCCTTT+TGG | 0.219963 | 6_3:-91728611 | None:intergenic |
| GAACCAGGTAGTAAGATATT+TGG | 0.282162 | 6_3:-91728029 | None:intergenic |
| AGAGTCAGTCAGAGGTTCTT+TGG | 0.290979 | 6_3:+91728624 | Msa0964740:CDS |
| AATTCATCATGCGTTATTCC+AGG | 0.382392 | 6_3:-91728691 | None:intergenic |
| CAAAGGATCCAAATATTATA+TGG | 0.383489 | 6_3:+91728718 | Msa0964740:CDS |
| GAGTCAGTCAGAGGTTCTTT+GGG | 0.389685 | 6_3:+91728625 | Msa0964740:CDS |
| TTCTATTCACATCTTCCAAA+AGG | 0.390556 | 6_3:+91728596 | Msa0964740:CDS |
| TCTTGACGCCGTCAGCCATT+TGG | 0.395579 | 6_3:-91728510 | None:intergenic |
| TTCATGATTGATGCTTGTTA+CGG | 0.446394 | 6_3:+91728538 | Msa0964740:CDS |
| TTATCTCATCAGTGGCATAA+AGG | 0.466600 | 6_3:-91728768 | None:intergenic |
| ATTGATGCTTGTTACGGAGG+GGG | 0.492034 | 6_3:+91728544 | Msa0964740:CDS |
| TGATTGATGCTTGTTACGGA+GGG | 0.498805 | 6_3:+91728542 | Msa0964740:CDS |
| CTCATCAGTGGCATAAAGGT+CGG | 0.507655 | 6_3:-91728764 | None:intergenic |
| TCTATTCACATCTTCCAAAA+GGG | 0.515999 | 6_3:+91728597 | Msa0964740:CDS |
| AAAACGGAAAGACCGATCAA+TGG | 0.529426 | 6_3:+91727986 | Msa0964740:CDS |
| TCATCAGTGGCATAAAGGTC+GGG | 0.536339 | 6_3:-91728763 | None:intergenic |
| TTATGAGCAGACATCGAAAA+CGG | 0.538706 | 6_3:+91727970 | Msa0964740:CDS |
| ATGATTGATGCTTGTTACGG+AGG | 0.558998 | 6_3:+91728541 | Msa0964740:CDS |
| CAAATATTATATGGTCAGCA+TGG | 0.570578 | 6_3:+91728727 | Msa0964740:CDS |
| GTGGCATAAAGGTCGGGTAG+TGG | 0.571496 | 6_3:-91728757 | None:intergenic |
| CGCATGATGAATTGATACAA+AGG | 0.574943 | 6_3:+91728701 | Msa0964740:CDS |
| TTGATGCTTGTTACGGAGGG+GGG | 0.576592 | 6_3:+91728545 | Msa0964740:CDS |
| CAGGTAGTAAGATATTTGGT+TGG | 0.582485 | 6_3:-91728025 | None:intergenic |
| ATTCATCATGCGTTATTCCA+GGG | 0.587040 | 6_3:-91728690 | None:intergenic |
| CAACCAAATATCTTACTACC+TGG | 0.589228 | 6_3:+91728026 | Msa0964740:CDS |
| GATTGATGCTTGTTACGGAG+GGG | 0.589936 | 6_3:+91728543 | Msa0964740:CDS |
| TAGAATCAAGTTAAGAGAGT+GGG | 0.593682 | 6_3:+91728811 | Msa0964740:exon |
| ATGTGAATAGAACAACTTTG+TGG | 0.598030 | 6_3:-91728585 | None:intergenic |
| GATTGTGTTAATGATTACCC+TGG | 0.604085 | 6_3:+91728673 | Msa0964740:CDS |
| ATAGAATCAAGTTAAGAGAG+TGG | 0.627109 | 6_3:+91728810 | Msa0964740:exon |
| AGGGATGAAGAGTCAGTCAG+AGG | 0.636514 | 6_3:+91728616 | Msa0964740:CDS |
| TGAATAGAACAACTTTGTGG+TGG | 0.649665 | 6_3:-91728582 | None:intergenic |
| GTGTTAGACCAAATGGCTGA+CGG | 0.654978 | 6_3:+91728502 | Msa0964740:CDS |
| GAATAGAACAACTTTGTGGT+GGG | 0.689752 | 6_3:-91728581 | None:intergenic |
| TGGAACAAGGTAAAACCAAG+CGG | 0.712400 | 6_3:+91726691 | Msa0964740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAATTTGTTAAAATAAATA+AGG | - | chr6_3:91727884-91727903 | None:intergenic | 10.0% |
| !!! | ACAATTTGTTAAAATAAATA+AGG | - | chr6_3:91727884-91727903 | None:intergenic | 10.0% |
| !!! | AAATTAATTTTACTCTTTTG+AGG | - | chr6_3:91726737-91726756 | None:intergenic | 15.0% |
| !! | AAAAAGCAATATTGAATTAT+TGG | - | chr6_3:91726838-91726857 | None:intergenic | 15.0% |
| !!! | AAATTAATTTTACTCTTTTG+AGG | - | chr6_3:91726737-91726756 | None:intergenic | 15.0% |
| !! | AAAAAGCAATATTGAATTAT+TGG | - | chr6_3:91726838-91726857 | None:intergenic | 15.0% |
| !!! | ACAAATTTGGAATACAAAAA+TGG | - | chr6_3:91726880-91726899 | None:intergenic | 20.0% |
| !!! | TTTTTGTATTCCAAATTTGT+TGG | + | chr6_3:91726880-91726899 | Msa0964740:intron | 20.0% |
| !! | TGATTTAATCAAATCAATTG+CGG | + | chr6_3:91727215-91727234 | Msa0964740:intron | 20.0% |
| !!! | AAGTTTGACTAGAATATTTT+TGG | + | chr6_3:91727241-91727260 | Msa0964740:intron | 20.0% |
| !! | TACCAAAATATGTTATATTG+AGG | - | chr6_3:91727377-91727396 | None:intergenic | 20.0% |
| !!! | GATTAGAAAACTATTTTAGT+TGG | + | chr6_3:91727692-91727711 | Msa0964740:intron | 20.0% |
| !! | AAGGAAATGATAAAAACATA+AGG | - | chr6_3:91727865-91727884 | None:intergenic | 20.0% |
| !! | CGAAAAATGATAATATTATG+AGG | - | chr6_3:91728166-91728185 | None:intergenic | 20.0% |
| !!! | ACAAATTTGGAATACAAAAA+TGG | - | chr6_3:91726880-91726899 | None:intergenic | 20.0% |
| !!! | TTTTTGTATTCCAAATTTGT+TGG | + | chr6_3:91726880-91726899 | Msa0964740:intron | 20.0% |
| !! | TGATTTAATCAAATCAATTG+CGG | + | chr6_3:91727215-91727234 | Msa0964740:intron | 20.0% |
| !!! | AAGTTTGACTAGAATATTTT+TGG | + | chr6_3:91727241-91727260 | Msa0964740:intron | 20.0% |
| !! | TACCAAAATATGTTATATTG+AGG | - | chr6_3:91727377-91727396 | None:intergenic | 20.0% |
| !!! | GATTAGAAAACTATTTTAGT+TGG | + | chr6_3:91727692-91727711 | Msa0964740:intron | 20.0% |
| !! | AAGGAAATGATAAAAACATA+AGG | - | chr6_3:91727865-91727884 | None:intergenic | 20.0% |
| !! | CGAAAAATGATAATATTATG+AGG | - | chr6_3:91728166-91728185 | None:intergenic | 20.0% |
| ! | AAGAACTCTTTAAATACATG+TGG | - | chr6_3:91726783-91726802 | None:intergenic | 25.0% |
| ! | ATTGAATTATTGGCAAAACA+AGG | - | chr6_3:91726828-91726847 | None:intergenic | 25.0% |
| ! | TCTCTTATTAACAATGTAGT+GGG | - | chr6_3:91726937-91726956 | None:intergenic | 25.0% |
| ! | GATTAGAAAACTATTCTAGT+TGG | + | chr6_3:91727181-91727200 | Msa0964740:intron | 25.0% |
| !!! | GCAATCTGAAATATTTTAGT+AGG | + | chr6_3:91727267-91727286 | Msa0964740:intron | 25.0% |
| !! | GTCCTCAATATAACATATTT+TGG | + | chr6_3:91727372-91727391 | Msa0964740:intron | 25.0% |
| ! | ACTAATAAGTGAAAGACTTT+GGG | - | chr6_3:91727448-91727467 | None:intergenic | 25.0% |
| ! | TACTAATAAGTGAAAGACTT+TGG | - | chr6_3:91727449-91727468 | None:intergenic | 25.0% |
| !!! | AATCAATCTGGTTTTGTTTT+TGG | + | chr6_3:91727766-91727785 | Msa0964740:intron | 25.0% |
| ! | ATGATAAAAACATAAGGCAA+TGG | - | chr6_3:91727859-91727878 | None:intergenic | 25.0% |
| ! | GTATTTGTTTATGTTGTCTT+TGG | + | chr6_3:91727934-91727953 | Msa0964740:intron | 25.0% |
| ! | GTTCAAAAAAAACCATTGAT+CGG | - | chr6_3:91728001-91728020 | None:intergenic | 25.0% |
| !!! | TAAAAAAGTGTTAGACCAAA+TGG | + | chr6_3:91728495-91728514 | Msa0964740:CDS | 25.0% |
| ! | CAAAGGATCCAAATATTATA+TGG | + | chr6_3:91728718-91728737 | Msa0964740:CDS | 25.0% |
| !!! | AGAATTTTTTATCTCATCAG+TGG | - | chr6_3:91728779-91728798 | None:intergenic | 25.0% |
| ! | AAGAACTCTTTAAATACATG+TGG | - | chr6_3:91726783-91726802 | None:intergenic | 25.0% |
| ! | ATTGAATTATTGGCAAAACA+AGG | - | chr6_3:91726828-91726847 | None:intergenic | 25.0% |
| ! | TCTCTTATTAACAATGTAGT+GGG | - | chr6_3:91726937-91726956 | None:intergenic | 25.0% |
| ! | GATTAGAAAACTATTCTAGT+TGG | + | chr6_3:91727181-91727200 | Msa0964740:intron | 25.0% |
| !!! | GCAATCTGAAATATTTTAGT+AGG | + | chr6_3:91727267-91727286 | Msa0964740:intron | 25.0% |
| !! | GTCCTCAATATAACATATTT+TGG | + | chr6_3:91727372-91727391 | Msa0964740:intron | 25.0% |
| ! | ACTAATAAGTGAAAGACTTT+GGG | - | chr6_3:91727448-91727467 | None:intergenic | 25.0% |
| ! | TACTAATAAGTGAAAGACTT+TGG | - | chr6_3:91727449-91727468 | None:intergenic | 25.0% |
| !!! | AATCAATCTGGTTTTGTTTT+TGG | + | chr6_3:91727766-91727785 | Msa0964740:intron | 25.0% |
| ! | ATGATAAAAACATAAGGCAA+TGG | - | chr6_3:91727859-91727878 | None:intergenic | 25.0% |
| ! | GTATTTGTTTATGTTGTCTT+TGG | + | chr6_3:91727934-91727953 | Msa0964740:intron | 25.0% |
| ! | GTTCAAAAAAAACCATTGAT+CGG | - | chr6_3:91728001-91728020 | None:intergenic | 25.0% |
| !!! | TAAAAAAGTGTTAGACCAAA+TGG | + | chr6_3:91728495-91728514 | Msa0964740:CDS | 25.0% |
| ! | CAAAGGATCCAAATATTATA+TGG | + | chr6_3:91728718-91728737 | Msa0964740:CDS | 25.0% |
| !!! | AGAATTTTTTATCTCATCAG+TGG | - | chr6_3:91728779-91728798 | None:intergenic | 25.0% |
| TTGTAGCAATCCAACAAATT+TGG | - | chr6_3:91726893-91726912 | None:intergenic | 30.0% | |
| CTCTCTTATTAACAATGTAG+TGG | - | chr6_3:91726938-91726957 | None:intergenic | 30.0% | |
| GTAGATTGTTCTCACTTATT+TGG | - | chr6_3:91727025-91727044 | None:intergenic | 30.0% | |
| !! | GATAAATTTGTTGGAACTTC+TGG | - | chr6_3:91727049-91727068 | None:intergenic | 30.0% |
| GTTGTACGTGATAAATTTGT+TGG | - | chr6_3:91727058-91727077 | None:intergenic | 30.0% | |
| AATTTATCACGTACAACTTC+AGG | + | chr6_3:91727061-91727080 | Msa0964740:intron | 30.0% | |
| TTAGACCAATAACAACATGT+GGG | - | chr6_3:91727155-91727174 | None:intergenic | 30.0% | |
| TTTAGACCAATAACAACATG+TGG | - | chr6_3:91727156-91727175 | None:intergenic | 30.0% | |
| TTTAATCAAATCAATTGCGG+TGG | + | chr6_3:91727218-91727237 | Msa0964740:intron | 30.0% | |
| GATCTTAGTATCATATAGAG+TGG | + | chr6_3:91727630-91727649 | Msa0964740:intron | 30.0% | |
| TCCAACGATTAAACCATATT+TGG | + | chr6_3:91727658-91727677 | Msa0964740:intron | 30.0% | |
| ACCAAATATGGTTTAATCGT+TGG | - | chr6_3:91727662-91727681 | None:intergenic | 30.0% | |
| TCTAGTGTTTAGACCAAATA+TGG | - | chr6_3:91727674-91727693 | None:intergenic | 30.0% | |
| !!! | GAAAACTATTTTAGTTGGAG+TGG | + | chr6_3:91727697-91727716 | Msa0964740:intron | 30.0% |
| TTGTTTATGTTGTCTTTGGT+AGG | + | chr6_3:91727938-91727957 | Msa0964740:intron | 30.0% | |
| ATGGTAACTATCAACAAAGA+GGG | + | chr6_3:91728319-91728338 | Msa0964740:intron | 30.0% | |
| TATTTGTGATTCTCAATGCA+TGG | + | chr6_3:91728423-91728442 | Msa0964740:intron | 30.0% | |
| ! | TTCATGATTGATGCTTGTTA+CGG | + | chr6_3:91728538-91728557 | Msa0964740:CDS | 30.0% |
| ATGTGAATAGAACAACTTTG+TGG | - | chr6_3:91728588-91728607 | None:intergenic | 30.0% | |
| TTCTATTCACATCTTCCAAA+AGG | + | chr6_3:91728596-91728615 | Msa0964740:CDS | 30.0% | |
| TCTATTCACATCTTCCAAAA+GGG | + | chr6_3:91728597-91728616 | Msa0964740:CDS | 30.0% | |
| CATGCTGACCATATAATATT+TGG | - | chr6_3:91728729-91728748 | None:intergenic | 30.0% | |
| CAAATATTATATGGTCAGCA+TGG | + | chr6_3:91728727-91728746 | Msa0964740:CDS | 30.0% | |
| ATAGAATCAAGTTAAGAGAG+TGG | + | chr6_3:91728810-91728829 | Msa0964740:exon | 30.0% | |
| TAGAATCAAGTTAAGAGAGT+GGG | + | chr6_3:91728811-91728830 | Msa0964740:exon | 30.0% | |
| TTGTAGCAATCCAACAAATT+TGG | - | chr6_3:91726893-91726912 | None:intergenic | 30.0% | |
| CTCTCTTATTAACAATGTAG+TGG | - | chr6_3:91726938-91726957 | None:intergenic | 30.0% | |
| GTAGATTGTTCTCACTTATT+TGG | - | chr6_3:91727025-91727044 | None:intergenic | 30.0% | |
| !! | GATAAATTTGTTGGAACTTC+TGG | - | chr6_3:91727049-91727068 | None:intergenic | 30.0% |
| GTTGTACGTGATAAATTTGT+TGG | - | chr6_3:91727058-91727077 | None:intergenic | 30.0% | |
| AATTTATCACGTACAACTTC+AGG | + | chr6_3:91727061-91727080 | Msa0964740:intron | 30.0% | |
| TTAGACCAATAACAACATGT+GGG | - | chr6_3:91727155-91727174 | None:intergenic | 30.0% | |
| TTTAGACCAATAACAACATG+TGG | - | chr6_3:91727156-91727175 | None:intergenic | 30.0% | |
| TTTAATCAAATCAATTGCGG+TGG | + | chr6_3:91727218-91727237 | Msa0964740:intron | 30.0% | |
| GATCTTAGTATCATATAGAG+TGG | + | chr6_3:91727630-91727649 | Msa0964740:intron | 30.0% | |
| TCCAACGATTAAACCATATT+TGG | + | chr6_3:91727658-91727677 | Msa0964740:intron | 30.0% | |
| ACCAAATATGGTTTAATCGT+TGG | - | chr6_3:91727662-91727681 | None:intergenic | 30.0% | |
| TCTAGTGTTTAGACCAAATA+TGG | - | chr6_3:91727674-91727693 | None:intergenic | 30.0% | |
| !!! | GAAAACTATTTTAGTTGGAG+TGG | + | chr6_3:91727697-91727716 | Msa0964740:intron | 30.0% |
| TTGTTTATGTTGTCTTTGGT+AGG | + | chr6_3:91727938-91727957 | Msa0964740:intron | 30.0% | |
| ATGGTAACTATCAACAAAGA+GGG | + | chr6_3:91728319-91728338 | Msa0964740:intron | 30.0% | |
| TATTTGTGATTCTCAATGCA+TGG | + | chr6_3:91728423-91728442 | Msa0964740:intron | 30.0% | |
| ! | TTCATGATTGATGCTTGTTA+CGG | + | chr6_3:91728538-91728557 | Msa0964740:CDS | 30.0% |
| ATGTGAATAGAACAACTTTG+TGG | - | chr6_3:91728588-91728607 | None:intergenic | 30.0% | |
| TTCTATTCACATCTTCCAAA+AGG | + | chr6_3:91728596-91728615 | Msa0964740:CDS | 30.0% | |
| TCTATTCACATCTTCCAAAA+GGG | + | chr6_3:91728597-91728616 | Msa0964740:CDS | 30.0% | |
| CATGCTGACCATATAATATT+TGG | - | chr6_3:91728729-91728748 | None:intergenic | 30.0% | |
| CAAATATTATATGGTCAGCA+TGG | + | chr6_3:91728727-91728746 | Msa0964740:CDS | 30.0% | |
| ATAGAATCAAGTTAAGAGAG+TGG | + | chr6_3:91728810-91728829 | Msa0964740:exon | 30.0% | |
| TAGAATCAAGTTAAGAGAGT+GGG | + | chr6_3:91728811-91728830 | Msa0964740:exon | 30.0% | |
| GATTGTTCTCACTTATTTGG+TGG | - | chr6_3:91727022-91727041 | None:intergenic | 35.0% | |
| TAGACCAATAACAACATGTG+GGG | - | chr6_3:91727154-91727173 | None:intergenic | 35.0% | |
| ! | GAAAACTATTCTAGTTGGAG+TGG | + | chr6_3:91727186-91727205 | Msa0964740:intron | 35.0% |
| !! | GAAGCATCAACTGTGTTTTT+CGG | - | chr6_3:91727519-91727538 | None:intergenic | 35.0% |
| TAAGATCATTCGAAACCGAA+GGG | - | chr6_3:91727617-91727636 | None:intergenic | 35.0% | |
| GATTGATTAGTGAAGAAAGC+AGG | - | chr6_3:91727754-91727773 | None:intergenic | 35.0% | |
| GCTTTCTTCACTAATCAATC+TGG | + | chr6_3:91727754-91727773 | Msa0964740:intron | 35.0% | |
| TTATGAGCAGACATCGAAAA+CGG | + | chr6_3:91727970-91727989 | Msa0964740:CDS | 35.0% | |
| CAGGTAGTAAGATATTTGGT+TGG | - | chr6_3:91728028-91728047 | None:intergenic | 35.0% | |
| CAACCAAATATCTTACTACC+TGG | + | chr6_3:91728026-91728045 | Msa0964740:CDS | 35.0% | |
| GAACCAGGTAGTAAGATATT+TGG | - | chr6_3:91728032-91728051 | None:intergenic | 35.0% | |
| ATTCATTACCTAGAAGAACC+AGG | - | chr6_3:91728047-91728066 | None:intergenic | 35.0% | |
| CATGGTAACTATCAACAAAG+AGG | + | chr6_3:91728318-91728337 | Msa0964740:intron | 35.0% | |
| TTGAGGAAGTTACCAAGTAA+AGG | - | chr6_3:91728375-91728394 | None:intergenic | 35.0% | |
| TATTAGCATGAGATGTGTTG+AGG | - | chr6_3:91728392-91728411 | None:intergenic | 35.0% | |
| GAATAGAACAACTTTGTGGT+GGG | - | chr6_3:91728584-91728603 | None:intergenic | 35.0% | |
| TGAATAGAACAACTTTGTGG+TGG | - | chr6_3:91728585-91728604 | None:intergenic | 35.0% | |
| GATTGTGTTAATGATTACCC+TGG | + | chr6_3:91728673-91728692 | Msa0964740:CDS | 35.0% | |
| ATTCATCATGCGTTATTCCA+GGG | - | chr6_3:91728693-91728712 | None:intergenic | 35.0% | |
| AATTCATCATGCGTTATTCC+AGG | - | chr6_3:91728694-91728713 | None:intergenic | 35.0% | |
| CGCATGATGAATTGATACAA+AGG | + | chr6_3:91728701-91728720 | Msa0964740:CDS | 35.0% | |
| TTATCTCATCAGTGGCATAA+AGG | - | chr6_3:91728771-91728790 | None:intergenic | 35.0% | |
| GATTGTTCTCACTTATTTGG+TGG | - | chr6_3:91727022-91727041 | None:intergenic | 35.0% | |
| TAGACCAATAACAACATGTG+GGG | - | chr6_3:91727154-91727173 | None:intergenic | 35.0% | |
| ! | GAAAACTATTCTAGTTGGAG+TGG | + | chr6_3:91727186-91727205 | Msa0964740:intron | 35.0% |
| !! | GAAGCATCAACTGTGTTTTT+CGG | - | chr6_3:91727519-91727538 | None:intergenic | 35.0% |
| TAAGATCATTCGAAACCGAA+GGG | - | chr6_3:91727617-91727636 | None:intergenic | 35.0% | |
| GATTGATTAGTGAAGAAAGC+AGG | - | chr6_3:91727754-91727773 | None:intergenic | 35.0% | |
| GCTTTCTTCACTAATCAATC+TGG | + | chr6_3:91727754-91727773 | Msa0964740:intron | 35.0% | |
| TTATGAGCAGACATCGAAAA+CGG | + | chr6_3:91727970-91727989 | Msa0964740:CDS | 35.0% | |
| CAGGTAGTAAGATATTTGGT+TGG | - | chr6_3:91728028-91728047 | None:intergenic | 35.0% | |
| CAACCAAATATCTTACTACC+TGG | + | chr6_3:91728026-91728045 | Msa0964740:CDS | 35.0% | |
| GAACCAGGTAGTAAGATATT+TGG | - | chr6_3:91728032-91728051 | None:intergenic | 35.0% | |
| ATTCATTACCTAGAAGAACC+AGG | - | chr6_3:91728047-91728066 | None:intergenic | 35.0% | |
| CATGGTAACTATCAACAAAG+AGG | + | chr6_3:91728318-91728337 | Msa0964740:intron | 35.0% | |
| TTGAGGAAGTTACCAAGTAA+AGG | - | chr6_3:91728375-91728394 | None:intergenic | 35.0% | |
| TATTAGCATGAGATGTGTTG+AGG | - | chr6_3:91728392-91728411 | None:intergenic | 35.0% | |
| GAATAGAACAACTTTGTGGT+GGG | - | chr6_3:91728584-91728603 | None:intergenic | 35.0% | |
| TGAATAGAACAACTTTGTGG+TGG | - | chr6_3:91728585-91728604 | None:intergenic | 35.0% | |
| GATTGTGTTAATGATTACCC+TGG | + | chr6_3:91728673-91728692 | Msa0964740:CDS | 35.0% | |
| ATTCATCATGCGTTATTCCA+GGG | - | chr6_3:91728693-91728712 | None:intergenic | 35.0% | |
| AATTCATCATGCGTTATTCC+AGG | - | chr6_3:91728694-91728713 | None:intergenic | 35.0% | |
| CGCATGATGAATTGATACAA+AGG | + | chr6_3:91728701-91728720 | Msa0964740:CDS | 35.0% | |
| TTATCTCATCAGTGGCATAA+AGG | - | chr6_3:91728771-91728790 | None:intergenic | 35.0% | |
| TGGAACAAGGTAAAACCAAG+CGG | + | chr6_3:91726691-91726710 | Msa0964740:CDS | 40.0% | |
| CAAAACAAGGAAAGACTCGT+TGG | - | chr6_3:91726815-91726834 | None:intergenic | 40.0% | |
| AGAGAGAACCTCATAACTCA+AGG | + | chr6_3:91726952-91726971 | Msa0964740:intron | 40.0% | |
| GAGAGAACCTCATAACTCAA+GGG | + | chr6_3:91726953-91726972 | Msa0964740:intron | 40.0% | |
| TTTCTCTCCCTTGAGTTATG+AGG | - | chr6_3:91726963-91726982 | None:intergenic | 40.0% | |
| TCACGTACAACTTCAGGAAT+AGG | + | chr6_3:91727067-91727086 | Msa0964740:intron | 40.0% | |
| AGTAAGAGTGATCTTGTGAG+AGG | + | chr6_3:91727096-91727115 | Msa0964740:intron | 40.0% | |
| !! | TCTTGTGAGAGGTGTTTATC+CGG | + | chr6_3:91727107-91727126 | Msa0964740:intron | 40.0% |
| CGTCAAAACAAGTCTAAGGA+GGG | - | chr6_3:91727562-91727581 | None:intergenic | 40.0% | |
| TCGTCAAAACAAGTCTAAGG+AGG | - | chr6_3:91727563-91727582 | None:intergenic | 40.0% | |
| GACTCGTCAAAACAAGTCTA+AGG | - | chr6_3:91727566-91727585 | None:intergenic | 40.0% | |
| CTAAGATCATTCGAAACCGA+AGG | - | chr6_3:91727618-91727637 | None:intergenic | 40.0% | |
| TTGCTTCTCTCATCTTCAAG+AGG | + | chr6_3:91727800-91727819 | Msa0964740:intron | 40.0% | |
| AAAACGGAAAGACCGATCAA+TGG | + | chr6_3:91727986-91728005 | Msa0964740:CDS | 40.0% | |
| ! | TCTTACTACCTGGTTCTTCT+AGG | + | chr6_3:91728036-91728055 | Msa0964740:intron | 40.0% |
| ACCAAGTAAAGGAGTTCCAT+TGG | - | chr6_3:91728364-91728383 | None:intergenic | 40.0% | |
| ! | ATGATTGATGCTTGTTACGG+AGG | + | chr6_3:91728541-91728560 | Msa0964740:CDS | 40.0% |
| ! | TGATTGATGCTTGTTACGGA+GGG | + | chr6_3:91728542-91728561 | Msa0964740:CDS | 40.0% |
| TGGAACAAGGTAAAACCAAG+CGG | + | chr6_3:91726691-91726710 | Msa0964740:CDS | 40.0% | |
| CAAAACAAGGAAAGACTCGT+TGG | - | chr6_3:91726815-91726834 | None:intergenic | 40.0% | |
| AGAGAGAACCTCATAACTCA+AGG | + | chr6_3:91726952-91726971 | Msa0964740:intron | 40.0% | |
| GAGAGAACCTCATAACTCAA+GGG | + | chr6_3:91726953-91726972 | Msa0964740:intron | 40.0% | |
| TTTCTCTCCCTTGAGTTATG+AGG | - | chr6_3:91726963-91726982 | None:intergenic | 40.0% | |
| TCACGTACAACTTCAGGAAT+AGG | + | chr6_3:91727067-91727086 | Msa0964740:intron | 40.0% | |
| AGTAAGAGTGATCTTGTGAG+AGG | + | chr6_3:91727096-91727115 | Msa0964740:intron | 40.0% | |
| !! | TCTTGTGAGAGGTGTTTATC+CGG | + | chr6_3:91727107-91727126 | Msa0964740:intron | 40.0% |
| CGTCAAAACAAGTCTAAGGA+GGG | - | chr6_3:91727562-91727581 | None:intergenic | 40.0% | |
| TCGTCAAAACAAGTCTAAGG+AGG | - | chr6_3:91727563-91727582 | None:intergenic | 40.0% | |
| GACTCGTCAAAACAAGTCTA+AGG | - | chr6_3:91727566-91727585 | None:intergenic | 40.0% | |
| CTAAGATCATTCGAAACCGA+AGG | - | chr6_3:91727618-91727637 | None:intergenic | 40.0% | |
| TTGCTTCTCTCATCTTCAAG+AGG | + | chr6_3:91727800-91727819 | Msa0964740:intron | 40.0% | |
| AAAACGGAAAGACCGATCAA+TGG | + | chr6_3:91727986-91728005 | Msa0964740:CDS | 40.0% | |
| ! | TCTTACTACCTGGTTCTTCT+AGG | + | chr6_3:91728036-91728055 | Msa0964740:intron | 40.0% |
| ACCAAGTAAAGGAGTTCCAT+TGG | - | chr6_3:91728364-91728383 | None:intergenic | 40.0% | |
| ! | ATGATTGATGCTTGTTACGG+AGG | + | chr6_3:91728541-91728560 | Msa0964740:CDS | 40.0% |
| ! | TGATTGATGCTTGTTACGGA+GGG | + | chr6_3:91728542-91728561 | Msa0964740:CDS | 40.0% |
| TAGTGGGATTGCAGAAACCA+CGG | - | chr6_3:91726921-91726940 | None:intergenic | 45.0% | |
| TAACAACATGTGGGGAAGGT+AGG | - | chr6_3:91727146-91727165 | None:intergenic | 45.0% | |
| CCAATAACAACATGTGGGGA+AGG | - | chr6_3:91727150-91727169 | None:intergenic | 45.0% | |
| CCTTCCCCACATGTTGTTAT+TGG | + | chr6_3:91727147-91727166 | Msa0964740:intron | 45.0% | |
| ! | GGAGAAGAGAAGAAAAGCAC+AGG | - | chr6_3:91727541-91727560 | None:intergenic | 45.0% |
| TCTACTCCTTTCTGTCCCTT+CGG | + | chr6_3:91727599-91727618 | Msa0964740:intron | 45.0% | |
| AGTTACCTTGTTGCAGCCAA+TGG | + | chr6_3:91728345-91728364 | Msa0964740:intron | 45.0% | |
| GCCAATGGAACTCCTTTACT+TGG | + | chr6_3:91728360-91728379 | Msa0964740:intron | 45.0% | |
| ! | ATTTGCTACGTGACTTGTGC+AGG | + | chr6_3:91728463-91728482 | Msa0964740:intron | 45.0% |
| GTGTTAGACCAAATGGCTGA+CGG | + | chr6_3:91728502-91728521 | Msa0964740:CDS | 45.0% | |
| ! | GATTGATGCTTGTTACGGAG+GGG | + | chr6_3:91728543-91728562 | Msa0964740:CDS | 45.0% |
| ! | ATTGATGCTTGTTACGGAGG+GGG | + | chr6_3:91728544-91728563 | Msa0964740:CDS | 45.0% |
| !! | GACTGACTCTTCATCCCTTT+TGG | - | chr6_3:91728614-91728633 | None:intergenic | 45.0% |
| AGAGTCAGTCAGAGGTTCTT+TGG | + | chr6_3:91728624-91728643 | Msa0964740:CDS | 45.0% | |
| GAGTCAGTCAGAGGTTCTTT+GGG | + | chr6_3:91728625-91728644 | Msa0964740:CDS | 45.0% | |
| TCATCAGTGGCATAAAGGTC+GGG | - | chr6_3:91728766-91728785 | None:intergenic | 45.0% | |
| CTCATCAGTGGCATAAAGGT+CGG | - | chr6_3:91728767-91728786 | None:intergenic | 45.0% | |
| TAGTGGGATTGCAGAAACCA+CGG | - | chr6_3:91726921-91726940 | None:intergenic | 45.0% | |
| TAACAACATGTGGGGAAGGT+AGG | - | chr6_3:91727146-91727165 | None:intergenic | 45.0% | |
| CCAATAACAACATGTGGGGA+AGG | - | chr6_3:91727150-91727169 | None:intergenic | 45.0% | |
| CCTTCCCCACATGTTGTTAT+TGG | + | chr6_3:91727147-91727166 | Msa0964740:intron | 45.0% | |
| ! | GGAGAAGAGAAGAAAAGCAC+AGG | - | chr6_3:91727541-91727560 | None:intergenic | 45.0% |
| TCTACTCCTTTCTGTCCCTT+CGG | + | chr6_3:91727599-91727618 | Msa0964740:intron | 45.0% | |
| AGTTACCTTGTTGCAGCCAA+TGG | + | chr6_3:91728345-91728364 | Msa0964740:intron | 45.0% | |
| GCCAATGGAACTCCTTTACT+TGG | + | chr6_3:91728360-91728379 | Msa0964740:intron | 45.0% | |
| ! | ATTTGCTACGTGACTTGTGC+AGG | + | chr6_3:91728463-91728482 | Msa0964740:intron | 45.0% |
| GTGTTAGACCAAATGGCTGA+CGG | + | chr6_3:91728502-91728521 | Msa0964740:CDS | 45.0% | |
| ! | GATTGATGCTTGTTACGGAG+GGG | + | chr6_3:91728543-91728562 | Msa0964740:CDS | 45.0% |
| ! | ATTGATGCTTGTTACGGAGG+GGG | + | chr6_3:91728544-91728563 | Msa0964740:CDS | 45.0% |
| !! | GACTGACTCTTCATCCCTTT+TGG | - | chr6_3:91728614-91728633 | None:intergenic | 45.0% |
| AGAGTCAGTCAGAGGTTCTT+TGG | + | chr6_3:91728624-91728643 | Msa0964740:CDS | 45.0% | |
| GAGTCAGTCAGAGGTTCTTT+GGG | + | chr6_3:91728625-91728644 | Msa0964740:CDS | 45.0% | |
| TCATCAGTGGCATAAAGGTC+GGG | - | chr6_3:91728766-91728785 | None:intergenic | 45.0% | |
| CTCATCAGTGGCATAAAGGT+CGG | - | chr6_3:91728767-91728786 | None:intergenic | 45.0% | |
| GGATTGCTACAACACTACCG+TGG | + | chr6_3:91726901-91726920 | Msa0964740:intron | 50.0% | |
| !! | TGTGAGAGGTGTTTATCCGG+TGG | + | chr6_3:91727110-91727129 | Msa0964740:intron | 50.0% |
| GGTAGGTATGAAGCTTCCAC+CGG | - | chr6_3:91727129-91727148 | None:intergenic | 50.0% | |
| TCGAAACCGAAGGGACAGAA+AGG | - | chr6_3:91727608-91727627 | None:intergenic | 50.0% | |
| ! | GAGTTCCATTGGCTGCAACA+AGG | - | chr6_3:91728353-91728372 | None:intergenic | 50.0% |
| ! | TTGATGCTTGTTACGGAGGG+GGG | + | chr6_3:91728545-91728564 | Msa0964740:CDS | 50.0% |
| AGGGATGAAGAGTCAGTCAG+AGG | + | chr6_3:91728616-91728635 | Msa0964740:CDS | 50.0% | |
| GGATTGCTACAACACTACCG+TGG | + | chr6_3:91726901-91726920 | Msa0964740:intron | 50.0% | |
| !! | TGTGAGAGGTGTTTATCCGG+TGG | + | chr6_3:91727110-91727129 | Msa0964740:intron | 50.0% |
| GGTAGGTATGAAGCTTCCAC+CGG | - | chr6_3:91727129-91727148 | None:intergenic | 50.0% | |
| TCGAAACCGAAGGGACAGAA+AGG | - | chr6_3:91727608-91727627 | None:intergenic | 50.0% | |
| ! | GAGTTCCATTGGCTGCAACA+AGG | - | chr6_3:91728353-91728372 | None:intergenic | 50.0% |
| ! | TTGATGCTTGTTACGGAGGG+GGG | + | chr6_3:91728545-91728564 | Msa0964740:CDS | 50.0% |
| AGGGATGAAGAGTCAGTCAG+AGG | + | chr6_3:91728616-91728635 | Msa0964740:CDS | 50.0% | |
| ! | CTCAGCGTCTCTTTTCCGCT+TGG | - | chr6_3:91726709-91726728 | None:intergenic | 55.0% |
| TCTTGACGCCGTCAGCCATT+TGG | - | chr6_3:91728513-91728532 | None:intergenic | 55.0% | |
| GTGGCATAAAGGTCGGGTAG+TGG | - | chr6_3:91728760-91728779 | None:intergenic | 55.0% | |
| ! | CTCAGCGTCTCTTTTCCGCT+TGG | - | chr6_3:91726709-91726728 | None:intergenic | 55.0% |
| TCTTGACGCCGTCAGCCATT+TGG | - | chr6_3:91728513-91728532 | None:intergenic | 55.0% | |
| GTGGCATAAAGGTCGGGTAG+TGG | - | chr6_3:91728760-91728779 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 91726690 | 91728872 | 91726690 | ID=Msa0964740;Name=Msa0964740 |
| chr6_3 | mRNA | 91726690 | 91728872 | 91726690 | ID=Msa0964740-mRNA-1;Parent=Msa0964740;Name=Msa0964740-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0.33|0.33|1|1|3|59|170 |
| chr6_3 | exon | 91726690 | 91726785 | 91726690 | ID=Msa0964740-mRNA-1:exon:16607;Parent=Msa0964740-mRNA-1 |
| chr6_3 | exon | 91727960 | 91728047 | 91727960 | ID=Msa0964740-mRNA-1:exon:16608;Parent=Msa0964740-mRNA-1 |
| chr6_3 | exon | 91728485 | 91728872 | 91728485 | ID=Msa0964740-mRNA-1:exon:16609;Parent=Msa0964740-mRNA-1 |
| chr6_3 | CDS | 91726690 | 91726785 | 91726690 | ID=Msa0964740-mRNA-1:cds;Parent=Msa0964740-mRNA-1 |
| chr6_3 | CDS | 91727960 | 91728047 | 91727960 | ID=Msa0964740-mRNA-1:cds;Parent=Msa0964740-mRNA-1 |
| chr6_3 | CDS | 91728485 | 91728813 | 91728485 | ID=Msa0964740-mRNA-1:cds;Parent=Msa0964740-mRNA-1 |
| chr6_3 | three_prime_UTR | 91728814 | 91728872 | 91728814 | ID=Msa0964740-mRNA-1:three_prime_utr;Parent=Msa0964740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
