Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964870 | sp|Q9LV52|HSFC1_ARATH | 59.155 | 213 | 60 | 3 | 8 | 216 | 14 | 203 | 4.40e-78 | 245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964870 | A0A072UBW9 | 89.205 | 352 | 30 | 3 | 1 | 351 | 1 | 345 | 0.0 | 584 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0964870 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023000 | Msa0964870 | 0.818202 | 2.216318e-52 | -8.615850e-47 |
| Msa0091570 | Msa0964870 | 0.809542 | 1.797245e-50 | -8.615850e-47 |
| Msa0784860 | Msa0964870 | 0.821443 | 4.027232e-53 | -8.615850e-47 |
| Msa0236270 | Msa0964870 | 0.804187 | 2.436990e-49 | -8.615850e-47 |
| Msa0899640 | Msa0964870 | 0.914662 | 1.473657e-84 | -8.615850e-47 |
| Msa0927260 | Msa0964870 | 0.844505 | 7.251866e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964870 | MtrunA17_Chr6g0485571 | 89.205 | 352 | 30 | 3 | 1 | 351 | 1 | 345 | 0.0 | 584 |
| Msa0964870 | MtrunA17_Chr5g0410881 | 44.215 | 242 | 120 | 5 | 3 | 234 | 24 | 260 | 6.56e-58 | 195 |
| Msa0964870 | MtrunA17_Chr4g0039891 | 44.811 | 212 | 109 | 4 | 6 | 209 | 7 | 218 | 6.86e-54 | 184 |
| Msa0964870 | MtrunA17_Chr3g0135831 | 43.902 | 205 | 113 | 2 | 11 | 214 | 46 | 249 | 9.85e-53 | 178 |
| Msa0964870 | MtrunA17_Chr7g0260331 | 40.260 | 231 | 130 | 4 | 11 | 235 | 49 | 277 | 1.01e-51 | 175 |
| Msa0964870 | MtrunA17_Chr1g0204741 | 39.357 | 249 | 122 | 5 | 11 | 245 | 40 | 273 | 1.74e-50 | 171 |
| Msa0964870 | MtrunA17_Chr8g0392001 | 46.465 | 198 | 95 | 4 | 9 | 197 | 20 | 215 | 1.13e-45 | 159 |
| Msa0964870 | MtrunA17_Chr4g0071051 | 43.814 | 194 | 100 | 2 | 11 | 203 | 101 | 286 | 5.30e-45 | 159 |
| Msa0964870 | MtrunA17_Chr6g0467041 | 41.860 | 215 | 110 | 5 | 9 | 215 | 20 | 227 | 4.21e-44 | 154 |
| Msa0964870 | MtrunA17_Chr8g0379701 | 40.887 | 203 | 112 | 4 | 9 | 209 | 10 | 206 | 3.92e-42 | 151 |
| Msa0964870 | MtrunA17_Chr1g0185131 | 37.333 | 225 | 111 | 4 | 11 | 223 | 32 | 238 | 2.89e-41 | 147 |
| Msa0964870 | MtrunA17_Chr8g0378061 | 39.565 | 230 | 94 | 5 | 12 | 218 | 23 | 230 | 2.60e-40 | 148 |
| Msa0964870 | MtrunA17_Chr3g0134031 | 55.263 | 114 | 51 | 0 | 8 | 121 | 21 | 134 | 1.45e-37 | 138 |
| Msa0964870 | MtrunA17_Chr2g0330821 | 36.967 | 211 | 93 | 3 | 10 | 202 | 78 | 266 | 3.59e-37 | 137 |
| Msa0964870 | MtrunA17_Chr2g0284481 | 39.459 | 185 | 101 | 2 | 9 | 186 | 13 | 193 | 4.72e-37 | 137 |
| Msa0964870 | MtrunA17_Chr5g0397881 | 59.184 | 98 | 40 | 0 | 5 | 102 | 18 | 115 | 9.79e-37 | 135 |
| Msa0964870 | MtrunA17_Chr8g0375041 | 39.011 | 182 | 94 | 2 | 3 | 179 | 1 | 170 | 2.26e-36 | 132 |
| Msa0964870 | MtrunA17_Chr1g0203601 | 58.252 | 103 | 43 | 0 | 2 | 104 | 9 | 111 | 4.58e-36 | 132 |
| Msa0964870 | MtrunA17_Chr5g0402291 | 35.266 | 207 | 121 | 2 | 3 | 196 | 1 | 207 | 1.26e-35 | 131 |
| Msa0964870 | MtrunA17_Chr5g0441531 | 59.184 | 98 | 40 | 0 | 5 | 102 | 19 | 116 | 6.15e-35 | 128 |
| Msa0964870 | MtrunA17_Chr6g0472421 | 57.143 | 98 | 42 | 0 | 5 | 102 | 27 | 124 | 1.39e-33 | 127 |
| Msa0964870 | MtrunA17_Chr7g0257331 | 54.839 | 93 | 42 | 0 | 10 | 102 | 21 | 113 | 4.15e-32 | 120 |
| Msa0964870 | MtrunA17_Chr4g0047421 | 49.485 | 97 | 45 | 1 | 10 | 102 | 32 | 128 | 5.09e-27 | 106 |
| Msa0964870 | MtrunA17_Chr1g0179311 | 32.927 | 164 | 89 | 5 | 50 | 208 | 2 | 149 | 1.82e-18 | 85.5 |
| Msa0964870 | MtrunA17_Chr1g0179321 | 51.429 | 70 | 34 | 0 | 1 | 70 | 39 | 108 | 5.17e-18 | 78.6 |
| Msa0964870 | MtrunA17_Chr4g0023771 | 50.000 | 62 | 31 | 0 | 7 | 68 | 11 | 72 | 9.27e-14 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964870 | AT3G24520.1 | 59.155 | 213 | 60 | 3 | 8 | 216 | 14 | 203 | 4.47e-79 | 245 |
| Msa0964870 | AT4G17750.1 | 47.107 | 242 | 106 | 5 | 6 | 230 | 47 | 283 | 1.27e-59 | 200 |
| Msa0964870 | AT1G32330.2 | 46.083 | 217 | 103 | 3 | 6 | 208 | 32 | 248 | 3.47e-58 | 196 |
| Msa0964870 | AT1G32330.1 | 46.083 | 217 | 103 | 3 | 6 | 208 | 32 | 248 | 4.52e-58 | 196 |
| Msa0964870 | AT2G26150.1 | 45.631 | 206 | 106 | 4 | 11 | 211 | 44 | 248 | 1.42e-53 | 180 |
| Msa0964870 | AT2G26150.4 | 45.631 | 206 | 106 | 4 | 11 | 211 | 44 | 248 | 1.42e-53 | 180 |
| Msa0964870 | AT3G22830.1 | 39.683 | 252 | 138 | 5 | 11 | 251 | 61 | 309 | 8.39e-52 | 177 |
| Msa0964870 | AT3G02990.1 | 45.673 | 208 | 106 | 3 | 9 | 209 | 21 | 228 | 2.61e-51 | 177 |
| Msa0964870 | AT5G16820.1 | 44.340 | 212 | 109 | 4 | 7 | 209 | 23 | 234 | 2.14e-50 | 175 |
| Msa0964870 | AT5G16820.2 | 44.340 | 212 | 109 | 4 | 7 | 209 | 23 | 234 | 2.14e-50 | 175 |
| Msa0964870 | AT3G51910.1 | 39.726 | 219 | 112 | 4 | 7 | 220 | 25 | 228 | 7.34e-48 | 163 |
| Msa0964870 | AT5G03720.2 | 39.738 | 229 | 118 | 4 | 5 | 218 | 49 | 272 | 7.37e-48 | 167 |
| Msa0964870 | AT5G03720.1 | 39.738 | 229 | 118 | 4 | 5 | 218 | 49 | 272 | 7.37e-48 | 167 |
| Msa0964870 | AT1G67970.1 | 41.667 | 192 | 107 | 4 | 9 | 197 | 17 | 206 | 2.42e-47 | 164 |
| Msa0964870 | AT3G63350.1 | 39.899 | 198 | 112 | 2 | 10 | 204 | 27 | 220 | 5.53e-46 | 158 |
| Msa0964870 | AT5G54070.1 | 38.542 | 192 | 109 | 2 | 8 | 199 | 68 | 250 | 1.37e-42 | 151 |
| Msa0964870 | AT5G43840.1 | 39.344 | 183 | 97 | 2 | 10 | 192 | 18 | 186 | 7.58e-40 | 142 |
| Msa0964870 | AT4G18880.1 | 36.502 | 263 | 148 | 5 | 9 | 259 | 13 | 268 | 3.03e-39 | 144 |
| Msa0964870 | AT4G13980.1 | 37.688 | 199 | 119 | 2 | 12 | 209 | 24 | 218 | 5.28e-39 | 144 |
| Msa0964870 | AT5G45710.3 | 34.256 | 289 | 170 | 8 | 3 | 278 | 1 | 282 | 2.19e-37 | 137 |
| Msa0964870 | AT5G45710.1 | 34.256 | 289 | 170 | 8 | 3 | 278 | 1 | 282 | 2.19e-37 | 137 |
| Msa0964870 | AT1G46264.1 | 63.158 | 95 | 35 | 0 | 8 | 102 | 31 | 125 | 3.53e-37 | 137 |
| Msa0964870 | AT4G11660.1 | 59.184 | 98 | 40 | 0 | 5 | 102 | 53 | 150 | 1.30e-34 | 130 |
| Msa0964870 | AT4G36990.1 | 39.306 | 173 | 92 | 2 | 5 | 164 | 8 | 180 | 4.03e-34 | 127 |
| Msa0964870 | AT5G62020.1 | 55.102 | 98 | 44 | 0 | 5 | 102 | 17 | 114 | 7.31e-33 | 124 |
| Msa0964870 | AT2G41690.1 | 37.430 | 179 | 98 | 3 | 11 | 179 | 40 | 214 | 1.24e-31 | 119 |
| Msa0964870 | AT2G26150.3 | 40.136 | 147 | 82 | 4 | 71 | 212 | 49 | 194 | 1.65e-24 | 101 |
| Msa0964870 | AT2G26150.2 | 40.136 | 147 | 82 | 4 | 71 | 212 | 49 | 194 | 1.65e-24 | 101 |
| Msa0964870 | AT4G18870.1 | 41.573 | 89 | 52 | 0 | 11 | 99 | 146 | 234 | 3.32e-18 | 84.3 |
| Msa0964870 | AT4G18870.1 | 45.161 | 93 | 46 | 2 | 9 | 99 | 11 | 100 | 6.14e-18 | 83.6 |
| Msa0964870 | AT4G19630.1 | 33.654 | 104 | 66 | 1 | 1 | 101 | 1 | 104 | 3.90e-12 | 63.5 |
Find 88 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAAGTGATAGTAGTAAAA+AGG | 0.204760 | 6_3:+91924904 | Msa0964870:CDS |
| AAGAGAGTGAGAGAATTCTA+AGG | 0.267094 | 6_3:-91923761 | None:intergenic |
| TGGCTCCGGTGGGTGGTTGG+TGG | 0.288941 | 6_3:+91924780 | Msa0964870:CDS |
| GCTCCGGTGGGTGGTTGGTG+GGG | 0.299967 | 6_3:+91924782 | Msa0964870:CDS |
| CCACCTTCTAACAACGAAAA+AGG | 0.302300 | 6_3:-91924983 | None:intergenic |
| AAGAAACATGTTGGTGGTAT+TGG | 0.321921 | 6_3:+91924257 | Msa0964870:CDS |
| TTGATAAGGTTATCTGTGTT+TGG | 0.326130 | 6_3:-91923700 | None:intergenic |
| AGTTTGGACAGATGGGTTAT+AGG | 0.339452 | 6_3:+91924813 | Msa0964870:CDS |
| CTCCGGTGGGTGGTTGGTGG+GGG | 0.345456 | 6_3:+91924783 | Msa0964870:CDS |
| ATTTGTTGAAGAACATAGTT+AGG | 0.347369 | 6_3:+91924234 | Msa0964870:CDS |
| GAAAAGTGGATCCGGATAGA+TGG | 0.355208 | 6_3:+91924174 | Msa0964870:CDS |
| GGGCATGGCGGTGGCAAATT+CGG | 0.364204 | 6_3:+91924646 | Msa0964870:CDS |
| GCCGGTGTTGTCTCCGACGC+CGG | 0.401712 | 6_3:+91924859 | Msa0964870:CDS |
| ACGATGAAACTGTTGTTAGA+TGG | 0.404226 | 6_3:-91923730 | None:intergenic |
| GGCTCCGGTGGGTGGTTGGT+GGG | 0.407249 | 6_3:+91924781 | Msa0964870:CDS |
| CATGTTGGTGGTATTGGAAA+TGG | 0.433048 | 6_3:+91924263 | Msa0964870:CDS |
| CGACGCCGGCGCCGATGATG+TGG | 0.444325 | 6_3:+91924873 | Msa0964870:CDS |
| GATGGGAATTTGCGAATGAA+TGG | 0.445117 | 6_3:+91924192 | Msa0964870:CDS |
| TTCGGTGAAGATGGAGTTTG+AGG | 0.446034 | 6_3:+91924664 | Msa0964870:CDS |
| AGTATTCTAGACAAAATTTG+AGG | 0.453954 | 6_3:-91924512 | None:intergenic |
| TGTCGGAAATTTCAATGAAA+TGG | 0.454809 | 6_3:+91924931 | Msa0964870:CDS |
| GTCAACTTCCTCGGAGTCAT+CGG | 0.460070 | 6_3:+91924625 | Msa0964870:CDS |
| TAGATGGGCCCCACTTGATA+AGG | 0.462941 | 6_3:-91923714 | None:intergenic |
| CCACCTCCTGCGGTGGTGCA+CGG | 0.463396 | 6_3:-91924760 | None:intergenic |
| TGTTTAGGGTTTCAGAAAAG+TGG | 0.466529 | 6_3:+91924160 | Msa0964870:intron |
| CTTGTGTTCTTAAATGGGAA+TGG | 0.469203 | 6_3:+91923621 | None:intergenic |
| ATGTCGTCGTCGCCGGAGCT+TGG | 0.470572 | 6_3:+91924716 | Msa0964870:CDS |
| TTTAGAAGAAGATGAAGCTA+TGG | 0.473347 | 6_3:+91924355 | Msa0964870:CDS |
| TTGTTGTGTTTGAAGAAAAG+AGG | 0.474502 | 6_3:-91923787 | None:intergenic |
| GGAGTCATCGGGCATGGCGG+TGG | 0.474769 | 6_3:+91924637 | Msa0964870:CDS |
| CAGGAGGTGGCTCCGGTGGG+TGG | 0.478583 | 6_3:+91924773 | Msa0964870:CDS |
| ACCGCAGGAGGTGGCTCCGG+TGG | 0.478779 | 6_3:+91924769 | Msa0964870:CDS |
| GACGCCGGCGCCGATGATGT+GGG | 0.479475 | 6_3:+91924874 | Msa0964870:CDS |
| TTCGCAAATTCCCATCTATC+CGG | 0.480483 | 6_3:-91924185 | None:intergenic |
| GTTGATATCTCCGGTGGCTA+AGG | 0.482556 | 6_3:+91924580 | Msa0964870:CDS |
| GGTGGCTAAGGCGGCCGTGA+CGG | 0.483148 | 6_3:+91924592 | Msa0964870:CDS |
| CCGTGCACCACCGCAGGAGG+TGG | 0.485061 | 6_3:+91924760 | Msa0964870:CDS |
| ACCACCGCAGGAGGTGGCTC+CGG | 0.485869 | 6_3:+91924766 | Msa0964870:CDS |
| GGGTTTCAGAAAAGTGGATC+CGG | 0.486703 | 6_3:+91924166 | Msa0964870:intron |
| AGGTGGCTCCGGTGGGTGGT+TGG | 0.489246 | 6_3:+91924777 | Msa0964870:CDS |
| AATTTAGAAGAAGAGCTTCA+AGG | 0.492990 | 6_3:+91924413 | Msa0964870:CDS |
| TAACATGATGTCGTCGTCGC+CGG | 0.497684 | 6_3:+91924709 | Msa0964870:CDS |
| GCAGATGGAGTTTGGACAGA+TGG | 0.497763 | 6_3:+91924805 | Msa0964870:CDS |
| CCGCAGGAGGTGGCTCCGGT+GGG | 0.505617 | 6_3:+91924770 | Msa0964870:CDS |
| TCAACTTCCTCGGAGTCATC+GGG | 0.508311 | 6_3:+91924626 | Msa0964870:CDS |
| CGATGAAACTGTTGTTAGAT+GGG | 0.511534 | 6_3:-91923729 | None:intergenic |
| TGACGTCGTTGCCGCCGTCA+CGG | 0.512284 | 6_3:-91924606 | None:intergenic |
| AAAAGTGGATCCGGATAGAT+GGG | 0.516894 | 6_3:+91924175 | Msa0964870:CDS |
| AGAAGATGAAGCTATGGTGA+TGG | 0.518088 | 6_3:+91924361 | Msa0964870:CDS |
| GGCAACGACGTCAACTTCCT+CGG | 0.518118 | 6_3:+91924616 | Msa0964870:CDS |
| CAGATGGAGTTTGGACAGAT+GGG | 0.518140 | 6_3:+91924806 | Msa0964870:CDS |
| GAAAAGACCACAACAAATGA+TGG | 0.518696 | 6_3:+91924463 | Msa0964870:CDS |
| GGCTAAGGCGGCCGTGACGG+CGG | 0.526324 | 6_3:+91924595 | Msa0964870:CDS |
| GAGGAAGATGAGGTAACGGT+TGG | 0.526402 | 6_3:+91924683 | Msa0964870:CDS |
| GATGGAGTTTGAGGAAGATG+AGG | 0.529799 | 6_3:+91924673 | Msa0964870:CDS |
| ACCGGAGCCACCTCCTGCGG+TGG | 0.537226 | 6_3:-91924767 | None:intergenic |
| TTCCTCGGAGTCATCGGGCA+TGG | 0.539288 | 6_3:+91924631 | Msa0964870:CDS |
| GAAACGACGGTTGATATCTC+CGG | 0.543586 | 6_3:+91924571 | Msa0964870:CDS |
| CACATCATCGGCGCCGGCGT+CGG | 0.545448 | 6_3:-91924872 | None:intergenic |
| GGTGGCAAATTCGGTGAAGA+TGG | 0.545610 | 6_3:+91924655 | Msa0964870:CDS |
| TCAATTTCAAAACCAAGCTC+CGG | 0.549174 | 6_3:-91924728 | None:intergenic |
| TCACCCCACATCATCGGCGC+CGG | 0.566971 | 6_3:-91924878 | None:intergenic |
| GATATCTCCGGTGGCTAAGG+CGG | 0.568045 | 6_3:+91924583 | Msa0964870:CDS |
| TTGTGAAGTTCCACGGATGC+CGG | 0.574030 | 6_3:+91924841 | Msa0964870:CDS |
| CTATTCTCACCCCACATCAT+CGG | 0.575525 | 6_3:-91924884 | None:intergenic |
| TTTGCACCGTGCACCACCGC+AGG | 0.578267 | 6_3:+91924754 | Msa0964870:CDS |
| AGAGAGTGAGAGAATTCTAA+GGG | 0.578397 | 6_3:-91923760 | None:intergenic |
| GGAGACAACACCGGCATCCG+TGG | 0.579394 | 6_3:-91924851 | None:intergenic |
| GGCGTGATTGTGAAGTTCCA+CGG | 0.595018 | 6_3:+91924834 | Msa0964870:CDS |
| CCCACCGGAGCCACCTCCTG+CGG | 0.595130 | 6_3:-91924770 | None:intergenic |
| GTTTGAGGAAGATGAGGTAA+CGG | 0.595921 | 6_3:+91924679 | Msa0964870:CDS |
| ACACAGATAACCTTATCAAG+TGG | 0.597268 | 6_3:+91923704 | Msa0964870:CDS |
| CACAGATAACCTTATCAAGT+GGG | 0.597725 | 6_3:+91923705 | Msa0964870:CDS |
| ACGCCGGCGCCGATGATGTG+GGG | 0.609629 | 6_3:+91924875 | Msa0964870:CDS |
| GTTAGGAAGAAACATGTTGG+TGG | 0.621782 | 6_3:+91924251 | Msa0964870:CDS |
| CGCCATGCCCGATGACTCCG+AGG | 0.624450 | 6_3:-91924633 | None:intergenic |
| AAATTTCAATGAAATGGCGG+CGG | 0.625567 | 6_3:+91924937 | Msa0964870:CDS |
| CATTATGAAGACATACCACA+TGG | 0.631169 | 6_3:+91923669 | Msa0964870:CDS |
| TGTTTGGTTCATTAACCATG+TGG | 0.639928 | 6_3:-91923684 | None:intergenic |
| CGGAAATTTCAATGAAATGG+CGG | 0.648772 | 6_3:+91924934 | Msa0964870:CDS |
| ATAGTTAGGAAGAAACATGT+TGG | 0.649558 | 6_3:+91924248 | Msa0964870:CDS |
| GCCGGCGTCGGAGACAACAC+CGG | 0.674432 | 6_3:-91924860 | None:intergenic |
| ACGACGGTTGATATCTCCGG+TGG | 0.680566 | 6_3:+91924574 | Msa0964870:CDS |
| CTCGGAGTCATCGGGCATGG+CGG | 0.681310 | 6_3:+91924634 | Msa0964870:CDS |
| TGGTATGTCTTCATAATGAA+CGG | 0.681423 | 6_3:-91923664 | None:intergenic |
| TTGTTGATAACAAGAAACGA+CGG | 0.686402 | 6_3:+91924558 | Msa0964870:CDS |
| ACAGATAACCTTATCAAGTG+GGG | 0.700643 | 6_3:+91923706 | Msa0964870:CDS |
| TTGGTGGTATTGGAAATGGA+AGG | 0.715173 | 6_3:+91924267 | Msa0964870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTGATATTTTTATTTCT+CGG | + | chr6_3:91923908-91923927 | Msa0964870:intron | 10.0% |
| !!! | CAATAATAATTATTTTAATG+AGG | + | chr6_3:91924319-91924338 | Msa0964870:CDS | 10.0% |
| !!! | AAAAAATTGATAATTGGATT+AGG | - | chr6_3:91923855-91923874 | None:intergenic | 15.0% |
| !!! | TGTACTAAAAAATTGATAAT+TGG | - | chr6_3:91923861-91923880 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTTGTTTTTGTTT+AGG | + | chr6_3:91924139-91924158 | Msa0964870:intron | 15.0% |
| !!! | TTTGTTTTTGTTTTTGTTTA+GGG | + | chr6_3:91924146-91924165 | Msa0964870:intron | 15.0% |
| !!! | AGTAATATTTTTGTCTGAAT+TGG | + | chr6_3:91924037-91924056 | Msa0964870:intron | 20.0% |
| !!! | GTAATATTTTTGTCTGAATT+GGG | + | chr6_3:91924038-91924057 | Msa0964870:intron | 20.0% |
| !!! | AAAAAGTGAGTTTTTGAAGT+GGG | - | chr6_3:91923886-91923905 | None:intergenic | 25.0% |
| !!! | AAAAAAGTGAGTTTTTGAAG+TGG | - | chr6_3:91923887-91923906 | None:intergenic | 25.0% |
| !! | AATTTTTGTGCAAACCAAAT+CGG | - | chr6_3:91923978-91923997 | None:intergenic | 25.0% |
| !! | ATTTGTTGAAGAACATAGTT+AGG | + | chr6_3:91924234-91924253 | Msa0964870:CDS | 25.0% |
| ! | AGTATTCTAGACAAAATTTG+AGG | - | chr6_3:91924515-91924534 | None:intergenic | 25.0% |
| ! | TAGAAGTGATAGTAGTAAAA+AGG | + | chr6_3:91924904-91924923 | Msa0964870:CDS | 25.0% |
| ! | AGAAGTGATAGTAGTAAAAA+GGG | + | chr6_3:91924905-91924924 | Msa0964870:CDS | 25.0% |
| TGGTATGTCTTCATAATGAA+CGG | - | chr6_3:91923667-91923686 | None:intergenic | 30.0% | |
| TTGATAAGGTTATCTGTGTT+TGG | - | chr6_3:91923703-91923722 | None:intergenic | 30.0% | |
| TTGTTGTGTTTGAAGAAAAG+AGG | - | chr6_3:91923790-91923809 | None:intergenic | 30.0% | |
| !! | AAATTGTGACGGACTAAATT+AGG | - | chr6_3:91923953-91923972 | None:intergenic | 30.0% |
| ATAGTTAGGAAGAAACATGT+TGG | + | chr6_3:91924248-91924267 | Msa0964870:CDS | 30.0% | |
| TTTAGAAGAAGATGAAGCTA+TGG | + | chr6_3:91924355-91924374 | Msa0964870:CDS | 30.0% | |
| AATTTAGAAGAAGAGCTTCA+AGG | + | chr6_3:91924413-91924432 | Msa0964870:CDS | 30.0% | |
| ! | AAAAAAGCCATCATTTGTTG+TGG | - | chr6_3:91924473-91924492 | None:intergenic | 30.0% |
| !! | TTGTTGATAACAAGAAACGA+CGG | + | chr6_3:91924558-91924577 | Msa0964870:CDS | 30.0% |
| GAAGTGATAGTAGTAAAAAG+GGG | + | chr6_3:91924906-91924925 | Msa0964870:CDS | 30.0% | |
| AAGTGATAGTAGTAAAAAGG+GGG | + | chr6_3:91924907-91924926 | Msa0964870:CDS | 30.0% | |
| TGTCGGAAATTTCAATGAAA+TGG | + | chr6_3:91924931-91924950 | Msa0964870:CDS | 30.0% | |
| TCTAACAACGAAAAAGGATA+AGG | - | chr6_3:91924980-91924999 | None:intergenic | 30.0% | |
| !! | TATCCTTTTTCGTTGTTAGA+AGG | + | chr6_3:91924980-91924999 | Msa0964870:CDS | 30.0% |
| CATTATGAAGACATACCACA+TGG | + | chr6_3:91923669-91923688 | Msa0964870:CDS | 35.0% | |
| ! | TGTTTGGTTCATTAACCATG+TGG | - | chr6_3:91923687-91923706 | None:intergenic | 35.0% |
| ACACAGATAACCTTATCAAG+TGG | + | chr6_3:91923704-91923723 | Msa0964870:CDS | 35.0% | |
| CACAGATAACCTTATCAAGT+GGG | + | chr6_3:91923705-91923724 | Msa0964870:CDS | 35.0% | |
| ACAGATAACCTTATCAAGTG+GGG | + | chr6_3:91923706-91923725 | Msa0964870:CDS | 35.0% | |
| CGATGAAACTGTTGTTAGAT+GGG | - | chr6_3:91923732-91923751 | None:intergenic | 35.0% | |
| ACGATGAAACTGTTGTTAGA+TGG | - | chr6_3:91923733-91923752 | None:intergenic | 35.0% | |
| AGAGAGTGAGAGAATTCTAA+GGG | - | chr6_3:91923763-91923782 | None:intergenic | 35.0% | |
| AAGAGAGTGAGAGAATTCTA+AGG | - | chr6_3:91923764-91923783 | None:intergenic | 35.0% | |
| CCAAATCGGAAAAATTGTGA+CGG | - | chr6_3:91923964-91923983 | None:intergenic | 35.0% | |
| ! | TGTTTAGGGTTTCAGAAAAG+TGG | + | chr6_3:91924160-91924179 | Msa0964870:intron | 35.0% |
| !! | GCGAATGAATGGTTTTTAAG+AGG | + | chr6_3:91924203-91924222 | Msa0964870:CDS | 35.0% |
| !! | AAGAAACATGTTGGTGGTAT+TGG | + | chr6_3:91924257-91924276 | Msa0964870:CDS | 35.0% |
| GAAAAGACCACAACAAATGA+TGG | + | chr6_3:91924463-91924482 | Msa0964870:CDS | 35.0% | |
| TCAATTTCAAAACCAAGCTC+CGG | - | chr6_3:91924731-91924750 | None:intergenic | 35.0% | |
| AGTGATAGTAGTAAAAAGGG+GGG | + | chr6_3:91924908-91924927 | Msa0964870:CDS | 35.0% | |
| CGGAAATTTCAATGAAATGG+CGG | + | chr6_3:91924934-91924953 | Msa0964870:CDS | 35.0% | |
| AAATTTCAATGAAATGGCGG+CGG | + | chr6_3:91924937-91924956 | Msa0964870:CDS | 35.0% | |
| AACAACGAAAAAGGATAAGG+TGG | - | chr6_3:91924977-91924996 | None:intergenic | 35.0% | |
| ! | CCGTCACAATTTTTCCGATT+TGG | + | chr6_3:91923961-91923980 | Msa0964870:intron | 40.0% |
| AAAAGTGGATCCGGATAGAT+GGG | + | chr6_3:91924175-91924194 | Msa0964870:CDS | 40.0% | |
| TTCGCAAATTCCCATCTATC+CGG | - | chr6_3:91924188-91924207 | None:intergenic | 40.0% | |
| GATGGGAATTTGCGAATGAA+TGG | + | chr6_3:91924192-91924211 | Msa0964870:CDS | 40.0% | |
| GTTAGGAAGAAACATGTTGG+TGG | + | chr6_3:91924251-91924270 | Msa0964870:CDS | 40.0% | |
| !! | CATGTTGGTGGTATTGGAAA+TGG | + | chr6_3:91924263-91924282 | Msa0964870:CDS | 40.0% |
| ! | TTGGTGGTATTGGAAATGGA+AGG | + | chr6_3:91924267-91924286 | Msa0964870:CDS | 40.0% |
| AGAAGATGAAGCTATGGTGA+TGG | + | chr6_3:91924361-91924380 | Msa0964870:CDS | 40.0% | |
| GTTTGAGGAAGATGAGGTAA+CGG | + | chr6_3:91924679-91924698 | Msa0964870:CDS | 40.0% | |
| !! | AGTTTGGACAGATGGGTTAT+AGG | + | chr6_3:91924813-91924832 | Msa0964870:CDS | 40.0% |
| CCACCTTCTAACAACGAAAA+AGG | - | chr6_3:91924986-91925005 | None:intergenic | 40.0% | |
| !! | CCTTTTTCGTTGTTAGAAGG+TGG | + | chr6_3:91924983-91925002 | Msa0964870:CDS | 40.0% |
| GGGTTTCAGAAAAGTGGATC+CGG | + | chr6_3:91924166-91924185 | Msa0964870:intron | 45.0% | |
| GAAAAGTGGATCCGGATAGA+TGG | + | chr6_3:91924174-91924193 | Msa0964870:CDS | 45.0% | |
| ! | GAAACGACGGTTGATATCTC+CGG | + | chr6_3:91924571-91924590 | Msa0964870:CDS | 45.0% |
| TTCGGTGAAGATGGAGTTTG+AGG | + | chr6_3:91924664-91924683 | Msa0964870:CDS | 45.0% | |
| GATGGAGTTTGAGGAAGATG+AGG | + | chr6_3:91924673-91924692 | Msa0964870:CDS | 45.0% | |
| CAGATGGAGTTTGGACAGAT+GGG | + | chr6_3:91924806-91924825 | Msa0964870:CDS | 45.0% | |
| CTATTCTCACCCCACATCAT+CGG | - | chr6_3:91924887-91924906 | None:intergenic | 45.0% | |
| ! | AGTAGTAAAAAGGGGGGTGT+CGG | + | chr6_3:91924914-91924933 | Msa0964870:CDS | 45.0% |
| TAGATGGGCCCCACTTGATA+AGG | - | chr6_3:91923717-91923736 | None:intergenic | 50.0% | |
| TGGGTAGCGAGAAAATTGCG+AGG | + | chr6_3:91924057-91924076 | Msa0964870:intron | 50.0% | |
| GGGTAGCGAGAAAATTGCGA+GGG | + | chr6_3:91924058-91924077 | Msa0964870:intron | 50.0% | |
| GTTGATATCTCCGGTGGCTA+AGG | + | chr6_3:91924580-91924599 | Msa0964870:CDS | 50.0% | |
| GTCAACTTCCTCGGAGTCAT+CGG | + | chr6_3:91924625-91924644 | Msa0964870:CDS | 50.0% | |
| TCAACTTCCTCGGAGTCATC+GGG | + | chr6_3:91924626-91924645 | Msa0964870:CDS | 50.0% | |
| ! | GGTGGCAAATTCGGTGAAGA+TGG | + | chr6_3:91924655-91924674 | Msa0964870:CDS | 50.0% |
| ! | GAGGAAGATGAGGTAACGGT+TGG | + | chr6_3:91924683-91924702 | Msa0964870:CDS | 50.0% |
| TAACATGATGTCGTCGTCGC+CGG | + | chr6_3:91924709-91924728 | Msa0964870:CDS | 50.0% | |
| GCAGATGGAGTTTGGACAGA+TGG | + | chr6_3:91924805-91924824 | Msa0964870:CDS | 50.0% | |
| GGCGTGATTGTGAAGTTCCA+CGG | + | chr6_3:91924834-91924853 | Msa0964870:CDS | 50.0% | |
| TTGTGAAGTTCCACGGATGC+CGG | + | chr6_3:91924841-91924860 | Msa0964870:CDS | 50.0% | |
| ! | ACGACGGTTGATATCTCCGG+TGG | + | chr6_3:91924574-91924593 | Msa0964870:CDS | 55.0% |
| GATATCTCCGGTGGCTAAGG+CGG | + | chr6_3:91924583-91924602 | Msa0964870:CDS | 55.0% | |
| GGCAACGACGTCAACTTCCT+CGG | + | chr6_3:91924616-91924635 | Msa0964870:CDS | 55.0% | |
| TTCCTCGGAGTCATCGGGCA+TGG | + | chr6_3:91924631-91924650 | Msa0964870:CDS | 60.0% | |
| GGGCATGGCGGTGGCAAATT+CGG | + | chr6_3:91924646-91924665 | Msa0964870:CDS | 60.0% | |
| TGGTGGGGGCAGATGGAGTT+TGG | + | chr6_3:91924797-91924816 | Msa0964870:CDS | 60.0% | |
| TGACGTCGTTGCCGCCGTCA+CGG | - | chr6_3:91924609-91924628 | None:intergenic | 65.0% | |
| CTCGGAGTCATCGGGCATGG+CGG | + | chr6_3:91924634-91924653 | Msa0964870:CDS | 65.0% | |
| ATGTCGTCGTCGCCGGAGCT+TGG | + | chr6_3:91924716-91924735 | Msa0964870:CDS | 65.0% | |
| TTTGCACCGTGCACCACCGC+AGG | + | chr6_3:91924754-91924773 | Msa0964870:CDS | 65.0% | |
| GGAGACAACACCGGCATCCG+TGG | - | chr6_3:91924854-91924873 | None:intergenic | 65.0% | |
| TCACCCCACATCATCGGCGC+CGG | - | chr6_3:91924881-91924900 | None:intergenic | 65.0% | |
| GTCACGGCCGCCTTAGCCAC+CGG | - | chr6_3:91924593-91924612 | None:intergenic | 70.0% | |
| GGTGGCTAAGGCGGCCGTGA+CGG | + | chr6_3:91924592-91924611 | Msa0964870:CDS | 70.0% | |
| CGCCATGCCCGATGACTCCG+AGG | - | chr6_3:91924636-91924655 | None:intergenic | 70.0% | |
| GGAGTCATCGGGCATGGCGG+TGG | + | chr6_3:91924637-91924656 | Msa0964870:CDS | 70.0% | |
| CCACCTCCTGCGGTGGTGCA+CGG | - | chr6_3:91924763-91924782 | None:intergenic | 70.0% | |
| ACCACCGCAGGAGGTGGCTC+CGG | + | chr6_3:91924766-91924785 | Msa0964870:CDS | 70.0% | |
| AGGTGGCTCCGGTGGGTGGT+TGG | + | chr6_3:91924777-91924796 | Msa0964870:CDS | 70.0% | |
| TGGCTCCGGTGGGTGGTTGG+TGG | + | chr6_3:91924780-91924799 | Msa0964870:CDS | 70.0% | |
| GGCTCCGGTGGGTGGTTGGT+GGG | + | chr6_3:91924781-91924800 | Msa0964870:CDS | 70.0% | |
| ! | GCTCCGGTGGGTGGTTGGTG+GGG | + | chr6_3:91924782-91924801 | Msa0964870:CDS | 70.0% |
| !! | CTCCGGTGGGTGGTTGGTGG+GGG | + | chr6_3:91924783-91924802 | Msa0964870:CDS | 70.0% |
| TGCCCCCACCAACCACCCAC+CGG | - | chr6_3:91924788-91924807 | None:intergenic | 70.0% | |
| !! | GGGTGGTTGGTGGGGGCAGA+TGG | + | chr6_3:91924790-91924809 | Msa0964870:CDS | 70.0% |
| !! | GCCGGTGTTGTCTCCGACGC+CGG | + | chr6_3:91924859-91924878 | Msa0964870:CDS | 70.0% |
| ! | GCCGGCGTCGGAGACAACAC+CGG | - | chr6_3:91924863-91924882 | None:intergenic | 70.0% |
| !! | CACATCATCGGCGCCGGCGT+CGG | - | chr6_3:91924875-91924894 | None:intergenic | 70.0% |
| !! | GACGCCGGCGCCGATGATGT+GGG | + | chr6_3:91924874-91924893 | Msa0964870:CDS | 70.0% |
| !! | ACGCCGGCGCCGATGATGTG+GGG | + | chr6_3:91924875-91924894 | Msa0964870:CDS | 70.0% |
| GGCTAAGGCGGCCGTGACGG+CGG | + | chr6_3:91924595-91924614 | Msa0964870:CDS | 75.0% | |
| GCACCGTGCACCACCGCAGG+AGG | + | chr6_3:91924757-91924776 | Msa0964870:CDS | 75.0% | |
| CCGTGCACCACCGCAGGAGG+TGG | + | chr6_3:91924760-91924779 | Msa0964870:CDS | 75.0% | |
| ACCGGAGCCACCTCCTGCGG+TGG | - | chr6_3:91924770-91924789 | None:intergenic | 75.0% | |
| ACCGCAGGAGGTGGCTCCGG+TGG | + | chr6_3:91924769-91924788 | Msa0964870:CDS | 75.0% | |
| CCCACCGGAGCCACCTCCTG+CGG | - | chr6_3:91924773-91924792 | None:intergenic | 75.0% | |
| CCGCAGGAGGTGGCTCCGGT+GGG | + | chr6_3:91924770-91924789 | Msa0964870:CDS | 75.0% | |
| CAGGAGGTGGCTCCGGTGGG+TGG | + | chr6_3:91924773-91924792 | Msa0964870:CDS | 75.0% | |
| !! | CGACGCCGGCGCCGATGATG+TGG | + | chr6_3:91924873-91924892 | Msa0964870:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 91923634 | 91925012 | 91923634 | ID=Msa0964870;Name=Msa0964870 |
| chr6_3 | mRNA | 91923634 | 91925012 | 91923634 | ID=Msa0964870-mRNA-1;Parent=Msa0964870;Name=Msa0964870-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|351 |
| chr6_3 | exon | 91923634 | 91923843 | 91923634 | ID=Msa0964870-mRNA-1:exon:16638;Parent=Msa0964870-mRNA-1 |
| chr6_3 | exon | 91924167 | 91925012 | 91924167 | ID=Msa0964870-mRNA-1:exon:16639;Parent=Msa0964870-mRNA-1 |
| chr6_3 | CDS | 91923634 | 91923843 | 91923634 | ID=Msa0964870-mRNA-1:cds;Parent=Msa0964870-mRNA-1 |
| chr6_3 | CDS | 91924167 | 91925012 | 91924167 | ID=Msa0964870-mRNA-1:cds;Parent=Msa0964870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
