AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0236270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236270 MtrunA17_Chr2g0285181 99.020 204 2 0 1 204 1 204 5.29e-154 424
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236270 AT2G25950.1 83.251 203 34 0 1 203 1 203 1.25e-132 370
Msa0236270 AT2G25950.2 84.293 191 30 0 1 191 1 191 4.27e-126 353

Find 63 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGAGTAGCTTCGCCTTTA+AGG 0.060495 2_2:-9221762 None:intergenic
TTGCACTTTCCTGATAATTT+TGG 0.141609 2_2:+9221709 Msa0236270:CDS
GTACACTATATTGGCCTTAA+AGG 0.210471 2_2:+9221748 Msa0236270:CDS
GAACACCGTTTGAATACTTC+TGG 0.251384 2_2:+9216601 Msa0236270:CDS
GTCGGGTGAAAATACATAAA+TGG 0.304827 2_2:+9222546 Msa0236270:exon
TTTAATGAAGGAATGGGATT+TGG 0.310224 2_2:+9218945 Msa0236270:intron
TATCATGCAATGAAATAATT+TGG 0.311299 2_2:+9222635 Msa0236270:three_prime_UTR
TCCATCAGCTCCACCAACTA+TGG 0.358505 2_2:-9218048 None:intergenic
GCTCGGTGGTGCAGTGAAAA+TGG 0.368947 2_2:+9216369 Msa0236270:exon
ACTACCAAAGTACACTATAT+TGG 0.369869 2_2:+9221739 Msa0236270:CDS
ACCATGATTGTTCCTCTGAT+TGG 0.373066 2_2:+9216419 Msa0236270:CDS
GTGTCACCTCCAAAATTATC+AGG 0.375063 2_2:-9221718 None:intergenic
ACAAAGCATGCAAGCCATTC+AGG 0.395846 2_2:+9218844 Msa0236270:CDS
ATGACAATGATTACCTTGTC+TGG 0.446088 2_2:-9218996 None:intergenic
AACAACTTACGCTCTCATCT+TGG 0.454085 2_2:-9218081 None:intergenic
TGAGAATTTGCAAGGAGTAT+TGG 0.456970 2_2:+9218969 Msa0236270:CDS
AACACCGTTTGAATACTTCT+GGG 0.457430 2_2:+9216602 Msa0236270:CDS
ATTAGGTATTCTAAATTTCA+AGG 0.477316 2_2:+9221670 Msa0236270:intron
TCCATAGTTGGTGGAGCTGA+TGG 0.477827 2_2:+9218047 Msa0236270:CDS
GTGGAGGTCTTTCACATGTC+GGG 0.482074 2_2:+9222529 Msa0236270:CDS
TGGCTAGATACTTGTTGATC+TGG 0.483936 2_2:+9222693 Msa0236270:three_prime_UTR
CCTTAAAGGCGAAGCTACTC+AGG 0.490216 2_2:+9221762 Msa0236270:CDS
TACTTGTGATCAGAAGGATT+CGG 0.503892 2_2:-9221902 None:intergenic
AAGGCCAATATAGTGTACTT+TGG 0.504360 2_2:-9221743 None:intergenic
CATAAGCTCGTAAACAATAG+TGG 0.504441 2_2:-9221879 None:intergenic
TACTGGATAACACTATCTCT+CGG 0.509014 2_2:+9222580 Msa0236270:three_prime_UTR
CAAACACATTGATCTCGAAA+AGG 0.510565 2_2:+9216450 Msa0236270:CDS
CGGGCGTAAAAGAATACAGT+TGG 0.512511 2_2:+9222600 Msa0236270:three_prime_UTR
TATTCTAAATTTCAAGGTGT+GGG 0.516199 2_2:+9221676 Msa0236270:CDS
AATCTACAACATCGCTTGCT+CGG 0.523546 2_2:+9216352 Msa0236270:five_prime_UTR
ATTAAGAGCATATCCATAGT+TGG 0.528832 2_2:+9218035 Msa0236270:CDS
AGAAAGAAAATATACCTGAA+TGG 0.532458 2_2:-9218858 None:intergenic
TTCAATTCAACAGGAACACT+TGG 0.545144 2_2:+9216720 Msa0236270:intron
ACACGTGCTGAAAGCGGTGG+AGG 0.548694 2_2:+9222513 Msa0236270:CDS
AGTACTTACTTGTGATCAGA+AGG 0.548789 2_2:-9221908 None:intergenic
TAAATATCTTTGTAGAACAA+TGG 0.559377 2_2:+9222768 Msa0236270:three_prime_UTR
GGTGGAGGTCTTTCACATGT+CGG 0.561265 2_2:+9222528 Msa0236270:CDS
TATGTAACTTACATCGACTC+CGG 0.563664 2_2:-9222660 None:intergenic
AAAACTGATTTAGCACTACC+AGG 0.567973 2_2:-9216568 None:intergenic
ACTGGATAACACTATCTCTC+GGG 0.568514 2_2:+9222581 Msa0236270:three_prime_UTR
GTATTCTAAATTTCAAGGTG+TGG 0.569021 2_2:+9221675 Msa0236270:CDS
ACCAATCAGAGGAACAATCA+TGG 0.570397 2_2:-9216420 None:intergenic
AATCATGGTCTTCACAGCTA+TGG 0.574162 2_2:-9216405 None:intergenic
GCTTTGAATGAAGCTACTCC+TGG 0.576045 2_2:+9216550 Msa0236270:CDS
ATGTAACTTACATCGACTCC+GGG 0.581518 2_2:-9222659 None:intergenic
GATTTGGCTGAGAATTTGCA+AGG 0.582316 2_2:+9218961 Msa0236270:CDS
ACTTACGCTCTCATCTTGGA+AGG 0.585832 2_2:-9218077 None:intergenic
GAACACTTGGAAAGCAATGA+GGG 0.588803 2_2:+9216733 Msa0236270:CDS
GCAATGAAATAATTTGGTCC+CGG 0.590148 2_2:+9222641 Msa0236270:three_prime_UTR
TACAGGACACGTGCTGAAAG+CGG 0.598434 2_2:+9222507 Msa0236270:intron
TTACCCCAGAAGTATTCAAA+CGG 0.599587 2_2:-9216606 None:intergenic
ATCAGGTTCATCAATAGAGA+TGG 0.601933 2_2:+9218803 Msa0236270:intron
GGAACACTTGGAAAGCAATG+AGG 0.612240 2_2:+9216732 Msa0236270:intron
GGAATGAATACAATTAACTC+AGG 0.615947 2_2:-9216760 None:intergenic
ACACCGTTTGAATACTTCTG+GGG 0.623405 2_2:+9216603 Msa0236270:CDS
AAGAGCATATCCATAGTTGG+TGG 0.623635 2_2:+9218038 Msa0236270:CDS
TTTGTGCGATAGATTCACTT+CGG 0.624035 2_2:+9218004 Msa0236270:intron
CTTACGCTCTCATCTTGGAA+GGG 0.631404 2_2:-9218076 None:intergenic
CTACAACATCGCTTGCTCGG+TGG 0.638569 2_2:+9216355 Msa0236270:five_prime_UTR
AAGTTACATATGAAATTCTG+TGG 0.643926 2_2:+9222673 Msa0236270:three_prime_UTR
GAGTATTGGAATACCAGACA+AGG 0.668076 2_2:+9218983 Msa0236270:CDS
AGGACACGTGCTGAAAGCGG+TGG 0.670321 2_2:+9222510 Msa0236270:intron
TTTGTAGAGAGACCAATCAG+AGG 0.715030 2_2:-9216431 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATAAAATTAAAGAAAA+GGG - chr2_2:9216492-9216511 None:intergenic 10.0%
!! TATTCATAAAATTAAAGAAA+AGG - chr2_2:9216493-9216512 None:intergenic 10.0%
!!! GTTTTAATGTTTAATTTTTT+TGG + chr2_2:9216687-9216706 Msa0236270:intron 10.0%
!! AATTAATTTATATACATTAG+AGG - chr2_2:9217166-9217185 None:intergenic 10.0%
!!! AATTTATCTTTAAAATTTAC+CGG + chr2_2:9217341-9217360 Msa0236270:intron 10.0%
!!! GATTTATTTATTTTTAATGA+AGG + chr2_2:9218933-9218952 Msa0236270:intron 10.0%
!! ATATAAAATATCATAGATAA+AGG + chr2_2:9219931-9219950 Msa0236270:intron 10.0%
!!! TTTTTTATTTTATAGTTTTG+TGG - chr2_2:9219982-9220001 None:intergenic 10.0%
!! TATAAAATAAAAAACAATCA+AGG + chr2_2:9219988-9220007 Msa0236270:intron 10.0%
!!! ATTTTAAATCATATAAACAA+AGG + chr2_2:9220388-9220407 Msa0236270:intron 10.0%
!! TTAAACATTAAAACAGATTA+AGG - chr2_2:9216681-9216700 None:intergenic 15.0%
!!! TTTAATTTTTTTGGTAATCA+TGG + chr2_2:9216696-9216715 Msa0236270:intron 15.0%
!!! TCCATTTTTATTTATAACAT+TGG + chr2_2:9217948-9217967 Msa0236270:intron 15.0%
!! ACCAATGTTATAAATAAAAA+TGG - chr2_2:9217952-9217971 None:intergenic 15.0%
!!! ATTTATTTTTAATGAAGGAA+TGG + chr2_2:9218938-9218957 Msa0236270:intron 15.0%
!!! TTTATTTTTAATGAAGGAAT+GGG + chr2_2:9218939-9218958 Msa0236270:intron 15.0%
!! GAATAACTAAAATGATAAAT+TGG - chr2_2:9219025-9219044 None:intergenic 15.0%
!! TTAAAAAAATCCAAAACAAA+CGG - chr2_2:9219213-9219232 None:intergenic 15.0%
!!! TTTTTTGTTTTAACTTTTTC+TGG - chr2_2:9220349-9220368 None:intergenic 15.0%
!! AAAATTACAAAACAACAATA+TGG + chr2_2:9220434-9220453 Msa0236270:intron 15.0%
!!! ATTTAGAATACCTAATAAAA+AGG - chr2_2:9221666-9221685 None:intergenic 15.0%
!! AAAATTAAAGAAAAGGGAAA+GGG - chr2_2:9216486-9216505 None:intergenic 20.0%
!! TAAAATTAAAGAAAAGGGAA+AGG - chr2_2:9216487-9216506 None:intergenic 20.0%
!! TGAATAATAGAAGTAACTTA+CGG - chr2_2:9216784-9216803 None:intergenic 20.0%
!! TAAGTAGTTAAATTACATGT+GGG - chr2_2:9217116-9217135 None:intergenic 20.0%
!! ATAAGTAGTTAAATTACATG+TGG - chr2_2:9217117-9217136 None:intergenic 20.0%
!!! TTTTTATACAAATTGTCTGA+TGG + chr2_2:9217281-9217300 Msa0236270:intron 20.0%
!! GTGACAATAATTGTAAATTT+GGG - chr2_2:9217924-9217943 None:intergenic 20.0%
!! TGTGACAATAATTGTAAATT+TGG - chr2_2:9217925-9217944 None:intergenic 20.0%
!!! AATAACGTCCATTTTAAATT+TGG - chr2_2:9218244-9218263 None:intergenic 20.0%
!!! ATCAATTTGAGTTATTCATA+TGG + chr2_2:9218367-9218386 Msa0236270:intron 20.0%
!!! ATTTTCTTTCTAATTTTCCA+AGG + chr2_2:9218870-9218889 Msa0236270:intron 20.0%
!! TAAAAAAATCCAAAACAAAC+GGG - chr2_2:9219212-9219231 None:intergenic 20.0%
!!! AACTTCAATAGATTTCTTTT+AGG - chr2_2:9219495-9219514 None:intergenic 20.0%
!!! ACTACTTATATTCTATTTTC+TGG - chr2_2:9219681-9219700 None:intergenic 20.0%
!!! TTTGATTTCAATGATAAATG+AGG - chr2_2:9219764-9219783 None:intergenic 20.0%
!!! TCTATGATATTTTATATAGC+TGG - chr2_2:9219928-9219947 None:intergenic 20.0%
!! CATATATATATCTTTCTTTC+TGG - chr2_2:9220112-9220131 None:intergenic 20.0%
!!! ATGATTTAAAATTACCTTAC+TGG - chr2_2:9220380-9220399 None:intergenic 20.0%
!!! CTTTGTTGTCTATAATATTT+TGG - chr2_2:9220544-9220563 None:intergenic 20.0%
!! AGGTCAAATTTAATTCATAA+CGG + chr2_2:9221224-9221243 Msa0236270:intron 20.0%
!! AAACATACAATAATTTAACG+TGG + chr2_2:9221387-9221406 Msa0236270:intron 20.0%
!! TTAGATATAAGTATGATATG+AGG + chr2_2:9221558-9221577 Msa0236270:intron 20.0%
!! ATTAGGTATTCTAAATTTCA+AGG + chr2_2:9221670-9221689 Msa0236270:intron 20.0%
!!! ATCTTTTTACTGTAAAATTC+AGG + chr2_2:9221787-9221806 Msa0236270:intron 20.0%
!!! TCTTTTTACTGTAAAATTCA+GGG + chr2_2:9221788-9221807 Msa0236270:intron 20.0%
!! AAAAAGAAAAAGCTAAGATT+AGG - chr2_2:9222041-9222060 None:intergenic 20.0%
!! TCAAAATTTAAATGCTTTCT+TGG + chr2_2:9222262-9222281 Msa0236270:intron 20.0%
!!! AAATGGTTTTATTTTGTTAC+TGG + chr2_2:9222563-9222582 Msa0236270:three_prime_UTR 20.0%
!! TATCATGCAATGAAATAATT+TGG + chr2_2:9222635-9222654 Msa0236270:three_prime_UTR 20.0%
!! TAAATATCTTTGTAGAACAA+TGG + chr2_2:9222768-9222787 Msa0236270:three_prime_UTR 20.0%
! TTCTTCTTCTTCTTCAATTT+GGG - chr2_2:9216330-9216349 None:intergenic 25.0%
! TTTCTTCTTCTTCTTCAATT+TGG - chr2_2:9216331-9216350 None:intergenic 25.0%
!! TAAATCAGTTTTCAAAGCTT+GGG + chr2_2:9216579-9216598 Msa0236270:CDS 25.0%
! GATGATAAGTTATCAAAACA+AGG - chr2_2:9216867-9216886 None:intergenic 25.0%
!! ACTTATTTGAGTTTATCTAG+TGG - chr2_2:9217081-9217100 None:intergenic 25.0%
! CAGTTCAATATATTAGAGAT+GGG - chr2_2:9217216-9217235 None:intergenic 25.0%
! ACAGTTCAATATATTAGAGA+TGG - chr2_2:9217217-9217236 None:intergenic 25.0%
! CTCTAATATATTGAACTGTT+TGG + chr2_2:9217218-9217237 Msa0236270:intron 25.0%
!! GTTTCTCTAATAGTTTTTCT+AGG - chr2_2:9217468-9217487 None:intergenic 25.0%
!! TGCTTCTTTTCATATTTGTA+TGG + chr2_2:9217873-9217892 Msa0236270:intron 25.0%
!!! TGAAGAAGCTTTATTGTATT+TGG + chr2_2:9218111-9218130 Msa0236270:intron 25.0%
!! CTTAAAACGGAACTATTTTA+AGG - chr2_2:9218175-9218194 None:intergenic 25.0%
!!! AAATAGTTCCGTTTTAAGAT+CGG + chr2_2:9218177-9218196 Msa0236270:intron 25.0%
! GACATCAACCAAATTTAAAA+TGG + chr2_2:9218233-9218252 Msa0236270:intron 25.0%
!! ATAACTCAAATTGATTTCAC+AGG - chr2_2:9218362-9218381 None:intergenic 25.0%
! ATAAGAACTCAATCATACAA+AGG - chr2_2:9218482-9218501 None:intergenic 25.0%
! ATAAAAGAACAGGAAAACAA+AGG - chr2_2:9218595-9218614 None:intergenic 25.0%
!! TGTTCTTTTATAAATGTACC+CGG + chr2_2:9218604-9218623 Msa0236270:intron 25.0%
! AAAAGTCAGTAATAGAAAAG+TGG - chr2_2:9218676-9218695 None:intergenic 25.0%
!!! ACTTTTCTATTACTGACTTT+TGG + chr2_2:9218675-9218694 Msa0236270:intron 25.0%
!!! TATTACTGACTTTTGGATAA+AGG + chr2_2:9218682-9218701 Msa0236270:intron 25.0%
! TCAAATATTCTCTACACAAA+AGG + chr2_2:9218762-9218781 Msa0236270:intron 25.0%
! AGAAAGAAAATATACCTGAA+TGG - chr2_2:9218861-9218880 None:intergenic 25.0%
! ATGAATACTTCACAATATGA+TGG - chr2_2:9219047-9219066 None:intergenic 25.0%
!!! AAATGACTTTTTTAGCAAGA+AGG - chr2_2:9219310-9219329 None:intergenic 25.0%
!!! TTAATTGGCTTTTCATTTTG+CGG - chr2_2:9219337-9219356 None:intergenic 25.0%
! CTTTGCTAATCTACTTTAAT+TGG - chr2_2:9219352-9219371 None:intergenic 25.0%
! TGTTAAAGAGGACATATATA+TGG - chr2_2:9219607-9219626 None:intergenic 25.0%
!! GTAGAATATTTTTCTCATCA+TGG + chr2_2:9219699-9219718 Msa0236270:intron 25.0%
!! ATTTGAGATCTCAATAGATT+GGG - chr2_2:9220083-9220102 None:intergenic 25.0%
! GATATATATATGAGCAACAA+AGG + chr2_2:9220120-9220139 Msa0236270:intron 25.0%
! GTTGCTTGAATTTAACAATA+CGG + chr2_2:9220206-9220225 Msa0236270:intron 25.0%
! ATTACAAAACAACAATATGG+TGG + chr2_2:9220437-9220456 Msa0236270:intron 25.0%
! AAGAAATTAAGCAAGAAACA+TGG + chr2_2:9220561-9220580 Msa0236270:intron 25.0%
!!! ACCCAAAAAGTATTTAAAAG+CGG - chr2_2:9220630-9220649 None:intergenic 25.0%
!!! TTTAAATACTTTTTGGGTAG+AGG + chr2_2:9220632-9220651 Msa0236270:intron 25.0%
!!! TTAAATACTTTTTGGGTAGA+GGG + chr2_2:9220633-9220652 Msa0236270:intron 25.0%
!! AAAAGCTTCTAAATTTGTTC+AGG - chr2_2:9220836-9220855 Msa0236280:CDS 25.0%
!!! ATTTAGAAGCTTTTGATTGT+CGG + chr2_2:9220842-9220861 Msa0236270:intron 25.0%
!! ATGCATCAATCCTTTTTATT+AGG + chr2_2:9221653-9221672 Msa0236270:intron 25.0%
! TATTCTAAATTTCAAGGTGT+GGG + chr2_2:9221676-9221695 Msa0236270:CDS 25.0%
!! ATTTTGTAGAGACAAAAAAG+AGG - chr2_2:9222398-9222417 None:intergenic 25.0%
! TTAGGAAAGAAAAACAATCA+TGG - chr2_2:9222470-9222489 None:intergenic 25.0%
! AAAAGAATGCATTAGTGATT+AGG - chr2_2:9222488-9222507 None:intergenic 25.0%
! AAGTTACATATGAAATTCTG+TGG + chr2_2:9222673-9222692 Msa0236270:three_prime_UTR 25.0%
TTTGTCGAAATTTCTGTTTC+AGG + chr2_2:9216522-9216541 Msa0236270:intron 30.0%
! CTAAATCAGTTTTCAAAGCT+TGG + chr2_2:9216578-9216597 Msa0236270:CDS 30.0%
GGAATGAATACAATTAACTC+AGG - chr2_2:9216763-9216782 None:intergenic 30.0%
!!! GGCATTAGTGTTTTAAAAGT+AGG - chr2_2:9216846-9216865 None:intergenic 30.0%
!! TAACCCATTTCTAGTACTAT+AGG + chr2_2:9216906-9216925 Msa0236270:intron 30.0%
TCACCTATAGTACTAGAAAT+GGG - chr2_2:9216912-9216931 None:intergenic 30.0%
TTCACCTATAGTACTAGAAA+TGG - chr2_2:9216913-9216932 None:intergenic 30.0%
ATAAGCTGAAACACAACTTA+TGG + chr2_2:9217001-9217020 Msa0236270:intron 30.0%
AAGTACTTGTGAAACTGTTT+GGG - chr2_2:9217055-9217074 None:intergenic 30.0%
TAAGTACTTGTGAAACTGTT+TGG - chr2_2:9217056-9217075 None:intergenic 30.0%
ATGAAATAAATGTGTGTGAG+TGG + chr2_2:9217823-9217842 Msa0236270:intron 30.0%
!! CTTTGCTTTTGAATATGCAT+TGG + chr2_2:9217846-9217865 Msa0236270:intron 30.0%
! ATTAAGAGCATATCCATAGT+TGG + chr2_2:9218035-9218054 Msa0236270:CDS 30.0%
!! AGAAGCTTTATTGTATTTGG+TGG + chr2_2:9218114-9218133 Msa0236270:intron 30.0%
!! GAAGCTTTATTGTATTTGGT+GGG + chr2_2:9218115-9218134 Msa0236270:intron 30.0%
! GAATGATAAGTGTCATTGAA+TGG - chr2_2:9218294-9218313 None:intergenic 30.0%
TGACACTTATCATTCATGAT+TGG + chr2_2:9218299-9218318 Msa0236270:intron 30.0%
AAGGGATATGATGATAAAGA+AGG - chr2_2:9218416-9218435 None:intergenic 30.0%
TGATTGAGTTCTTATATCCT+TGG + chr2_2:9218487-9218506 Msa0236270:intron 30.0%
GGGTACATTTATAAAAGAAC+AGG - chr2_2:9218605-9218624 None:intergenic 30.0%
! GTTCTTTTATAAATGTACCC+GGG + chr2_2:9218605-9218624 Msa0236270:intron 30.0%
TGAGAAATTCATCTTGAATC+AGG + chr2_2:9218786-9218805 Msa0236270:intron 30.0%
CGATTTGTCAATTAATTCCT+TGG - chr2_2:9218890-9218909 None:intergenic 30.0%
ATCAGTATTATACAAAGCTG+TGG - chr2_2:9218916-9218935 None:intergenic 30.0%
TTTAATGAAGGAATGGGATT+TGG + chr2_2:9218945-9218964 Msa0236270:intron 30.0%
GATTAGCAAAGTTTAACAGA+AGG + chr2_2:9219361-9219380 Msa0236270:intron 30.0%
! AGCATTGTTGTTAGTTATAG+TGG + chr2_2:9219392-9219411 Msa0236270:intron 30.0%
!! CTTCTTCTGAATTATTTTGC+TGG - chr2_2:9219545-9219564 None:intergenic 30.0%
ATATATGTCCTCTTTAACAC+TGG + chr2_2:9219608-9219627 Msa0236270:intron 30.0%
!! CTTTGTTATAGAGCATTGAA+GGG - chr2_2:9219647-9219666 None:intergenic 30.0%
!! ACTTTGTTATAGAGCATTGA+AGG - chr2_2:9219648-9219667 None:intergenic 30.0%
!! ATTCTATTTTCTGGCATAAC+TGG - chr2_2:9219672-9219691 None:intergenic 30.0%
! TTTTCTCATCATGGTCAAAT+AGG + chr2_2:9219708-9219727 Msa0236270:intron 30.0%
TTTCTCATCATGGTCAAATA+GGG + chr2_2:9219709-9219728 Msa0236270:intron 30.0%
! GTTGTCATGATGTTATTTAC+CGG + chr2_2:9219795-9219814 Msa0236270:intron 30.0%
! GATTTGAGATCTCAATAGAT+TGG - chr2_2:9220084-9220103 None:intergenic 30.0%
!!! ATCCTTATTTTTGCTTCCTA+TGG - chr2_2:9220154-9220173 None:intergenic 30.0%
! CCAGAAAAATGAGTTGAATA+GGG - chr2_2:9220249-9220268 None:intergenic 30.0%
! TCCAGAAAAATGAGTTGAAT+AGG - chr2_2:9220250-9220269 None:intergenic 30.0%
AAAAAATCCACAAACCAGTA+AGG + chr2_2:9220363-9220382 Msa0236270:intron 30.0%
!! AAAATTACCTTACTGGTTTG+TGG - chr2_2:9220373-9220392 None:intergenic 30.0%
!!! TGCCGCTTTTAAATACTTTT+TGG + chr2_2:9220625-9220644 Msa0236270:intron 30.0%
!!! GCCGCTTTTAAATACTTTTT+GGG + chr2_2:9220626-9220645 Msa0236270:intron 30.0%
ATTGTGCAACAAATGTGTTT+CGG - chr2_2:9220689-9220708 None:intergenic 30.0%
ATTAACACAAATATCAGAGC+TGG - chr2_2:9220732-9220751 None:intergenic 30.0%
TCATTTCAACCTCTATACAA+AGG + chr2_2:9220802-9220821 Msa0236270:intron 30.0%
TGCCTTGAAATTGACTAAAA+CGG + chr2_2:9221080-9221099 Msa0236270:intron 30.0%
TACAATAATTTAACGTGGCA+TGG + chr2_2:9221392-9221411 Msa0236270:intron 30.0%
ACAATAATTTAACGTGGCAT+GGG + chr2_2:9221393-9221412 Msa0236270:intron 30.0%
GCCTAAAAATTCTAGGTTTA+GGG + chr2_2:9221504-9221523 Msa0236270:intron 30.0%
! ACCCTAAACCTAGAATTTTT+AGG - chr2_2:9221508-9221527 None:intergenic 30.0%
GTATTCTAAATTTCAAGGTG+TGG + chr2_2:9221675-9221694 Msa0236270:CDS 30.0%
! TTGCACTTTCCTGATAATTT+TGG + chr2_2:9221709-9221728 Msa0236270:CDS 30.0%
ACTACCAAAGTACACTATAT+TGG + chr2_2:9221739-9221758 Msa0236270:CDS 30.0%
ATTTAGATGAATGTCATGGA+AGG - chr2_2:9221974-9221993 None:intergenic 30.0%
CATCATTTAGATGAATGTCA+TGG - chr2_2:9221978-9221997 None:intergenic 30.0%
CATGACATTCATCTAAATGA+TGG + chr2_2:9221976-9221995 Msa0236270:intron 30.0%
ATCGCAATGTACAAAAACAT+GGG - chr2_2:9222421-9222440 None:intergenic 30.0%
! TTTTGTACATTGCGATGATT+CGG + chr2_2:9222425-9222444 Msa0236270:intron 30.0%
! TCACTAATGCATTCTTTTAC+AGG + chr2_2:9222490-9222509 Msa0236270:intron 30.0%
CAAACACATTGATCTCGAAA+AGG + chr2_2:9216450-9216469 Msa0236270:CDS 35.0%
! AAAGAAAAGGGAAAGGGTTT+TGG - chr2_2:9216480-9216499 None:intergenic 35.0%
! AAAACTGATTTAGCACTACC+AGG - chr2_2:9216571-9216590 None:intergenic 35.0%
AACACCGTTTGAATACTTCT+GGG + chr2_2:9216602-9216621 Msa0236270:CDS 35.0%
!! TTACCCCAGAAGTATTCAAA+CGG - chr2_2:9216609-9216628 None:intergenic 35.0%
AATCATGGCTTCAATTCAAC+AGG + chr2_2:9216711-9216730 Msa0236270:intron 35.0%
TTCAATTCAACAGGAACACT+TGG + chr2_2:9216720-9216739 Msa0236270:intron 35.0%
!! GCTGTTTTCATAAGCTATTC+TGG + chr2_2:9216965-9216984 Msa0236270:intron 35.0%
! TATTGAACTGTTTGGAACTG+CGG + chr2_2:9217226-9217245 Msa0236270:intron 35.0%
ACCATCTTCTCTACTAATGA+AGG - chr2_2:9217367-9217386 None:intergenic 35.0%
TAGAGAAGATGGTAGAAACT+AGG + chr2_2:9217374-9217393 Msa0236270:intron 35.0%
GATTCATATCACTAGAGGTA+GGG + chr2_2:9217437-9217456 Msa0236270:intron 35.0%
TATTAGAGAAACTGCCAAGA+AGG + chr2_2:9217476-9217495 Msa0236270:intron 35.0%
ATTGATCTCTAGATCCTTCT+TGG - chr2_2:9217493-9217512 None:intergenic 35.0%
TAGAACACTATGACATCGTT+TGG + chr2_2:9217539-9217558 Msa0236270:intron 35.0%
! GTGGACTGAACTACATAATA+TGG + chr2_2:9217608-9217627 Msa0236270:intron 35.0%
AAAGAACAATGACACTGTCA+AGG - chr2_2:9217775-9217794 None:intergenic 35.0%
TAATGAACTACTGTAGCAGT+AGG + chr2_2:9217800-9217819 Msa0236270:intron 35.0%
TTTGTGCGATAGATTCACTT+CGG + chr2_2:9218004-9218023 Msa0236270:intron 35.0%
TCAATGCCAAGCATAAAAGA+AGG - chr2_2:9218215-9218234 None:intergenic 35.0%
! CTCAAATTGATTTCACAGGT+TGG - chr2_2:9218358-9218377 None:intergenic 35.0%
TGAAACAGCACAGATGATAA+GGG - chr2_2:9218434-9218453 None:intergenic 35.0%
ATGAAACAGCACAGATGATA+AGG - chr2_2:9218435-9218454 None:intergenic 35.0%
TGAGTTCTTATATCCTTGGT+TGG + chr2_2:9218491-9218510 Msa0236270:intron 35.0%
TATATCCTTGGTTGGATATC+AGG + chr2_2:9218499-9218518 Msa0236270:intron 35.0%
ATATCCTTGGTTGGATATCA+GGG + chr2_2:9218500-9218519 Msa0236270:intron 35.0%
TCTTACAATATCTACTCCCA+AGG - chr2_2:9218637-9218656 None:intergenic 35.0%
ATTTAGTGCTTGGATCAACA+AGG + chr2_2:9218711-9218730 Msa0236270:intron 35.0%
ATCAGGTTCATCAATAGAGA+TGG + chr2_2:9218803-9218822 Msa0236270:intron 35.0%
! TGAGAATTTGCAAGGAGTAT+TGG + chr2_2:9218969-9218988 Msa0236270:CDS 35.0%
ATGACAATGATTACCTTGTC+TGG - chr2_2:9218999-9219018 None:intergenic 35.0%
CAAATAGGGAATGCATAGTT+TGG + chr2_2:9219723-9219742 Msa0236270:intron 35.0%
! CGTCTTTTAGACTTTTGTAC+CGG - chr2_2:9219817-9219836 None:intergenic 35.0%
GATAGCTTCATCACATATCT+TGG + chr2_2:9219836-9219855 Msa0236270:intron 35.0%
! TCTTGGAAGCAAAGTTCTAA+TGG + chr2_2:9219853-9219872 Msa0236270:intron 35.0%
AACAAAGGTTAGATCACCAT+AGG + chr2_2:9220135-9220154 Msa0236270:intron 35.0%
CACCATAGGAAGCAAAAATA+AGG + chr2_2:9220149-9220168 Msa0236270:intron 35.0%
!! CCCTATTCAACTCATTTTTC+TGG + chr2_2:9220246-9220265 Msa0236270:intron 35.0%
AGTAAGCACCTAGATTGATA+AGG + chr2_2:9220276-9220295 Msa0236270:intron 35.0%
AGTGTAGTCCTTATCAATCT+AGG - chr2_2:9220287-9220306 None:intergenic 35.0%
CAAATATCAGAGCTGGTATT+TGG - chr2_2:9220725-9220744 None:intergenic 35.0%
AAGAATTGGAACCTGATTGA+CGG - chr2_2:9221131-9221150 None:intergenic 35.0%
CGATCGCGATAAAAAGATTA+AGG + chr2_2:9221176-9221195 Msa0236270:intron 35.0%
ACATGCTTTCATTCTTGGAT+AGG + chr2_2:9221249-9221268 Msa0236270:intron 35.0%
! TGTATAGTTAAGTGCTGCAT+GGG + chr2_2:9221364-9221383 Msa0236270:intron 35.0%
CTGAAGTCAGATTAGATCAA+AGG + chr2_2:9221428-9221447 Msa0236270:intron 35.0%
CGCCTAAAAATTCTAGGTTT+AGG + chr2_2:9221503-9221522 Msa0236270:intron 35.0%
AAGAAAACTCCAATGAGATG+AGG - chr2_2:9221608-9221627 None:intergenic 35.0%
GATGCATTAAAAAACCATGC+TGG - chr2_2:9221640-9221659 None:intergenic 35.0%
! CACTTTCCTGATAATTTTGG+AGG + chr2_2:9221712-9221731 Msa0236270:CDS 35.0%
AAGGCCAATATAGTGTACTT+TGG - chr2_2:9221746-9221765 None:intergenic 35.0%
!! GTACACTATATTGGCCTTAA+AGG + chr2_2:9221748-9221767 Msa0236270:CDS 35.0%
CATAAGCTCGTAAACAATAG+TGG - chr2_2:9221882-9221901 None:intergenic 35.0%
TACTTGTGATCAGAAGGATT+CGG - chr2_2:9221905-9221924 None:intergenic 35.0%
AGTACTTACTTGTGATCAGA+AGG - chr2_2:9221911-9221930 None:intergenic 35.0%
ACTGTTGAGTTCTCTACATT+AGG + chr2_2:9222011-9222030 Msa0236270:intron 35.0%
GAACTAGAATCGTCTTATGT+TGG + chr2_2:9222108-9222127 Msa0236270:intron 35.0%
AAATTCCAAACCCGATTGTT+AGG + chr2_2:9222187-9222206 Msa0236270:intron 35.0%
! TTTTACAGGTCCTAACAATC+GGG - chr2_2:9222200-9222219 None:intergenic 35.0%
! CTTTTACAGGTCCTAACAAT+CGG - chr2_2:9222201-9222220 None:intergenic 35.0%
TTGTTAGGACCTGTAAAAGA+TGG + chr2_2:9222202-9222221 Msa0236270:intron 35.0%
CAAGAAAGCTATGCTTCTTA+TGG - chr2_2:9222342-9222361 None:intergenic 35.0%
CATCGCAATGTACAAAAACA+TGG - chr2_2:9222422-9222441 None:intergenic 35.0%
GTCGGGTGAAAATACATAAA+TGG + chr2_2:9222546-9222565 Msa0236270:exon 35.0%
TACTGGATAACACTATCTCT+CGG + chr2_2:9222580-9222599 Msa0236270:three_prime_UTR 35.0%
GCAATGAAATAATTTGGTCC+CGG + chr2_2:9222641-9222660 Msa0236270:three_prime_UTR 35.0%
!! TATGTAACTTACATCGACTC+CGG - chr2_2:9222663-9222682 None:intergenic 35.0%
AATCTACAACATCGCTTGCT+CGG + chr2_2:9216352-9216371 Msa0236270:five_prime_UTR 40.0%
AATCATGGTCTTCACAGCTA+TGG - chr2_2:9216408-9216427 None:intergenic 40.0%
ACCATGATTGTTCCTCTGAT+TGG + chr2_2:9216419-9216438 Msa0236270:CDS 40.0%
ACCAATCAGAGGAACAATCA+TGG - chr2_2:9216423-9216442 None:intergenic 40.0%
TTTGTAGAGAGACCAATCAG+AGG - chr2_2:9216434-9216453 None:intergenic 40.0%
GAACACCGTTTGAATACTTC+TGG + chr2_2:9216601-9216620 Msa0236270:CDS 40.0%
ACACCGTTTGAATACTTCTG+GGG + chr2_2:9216603-9216622 Msa0236270:CDS 40.0%
GAACACTTGGAAAGCAATGA+GGG + chr2_2:9216733-9216752 Msa0236270:CDS 40.0%
AAACTGTTTGGGAGAGCTTA+TGG - chr2_2:9217044-9217063 None:intergenic 40.0%
TCTTCTCTACTAATGAAGGC+CGG - chr2_2:9217363-9217382 None:intergenic 40.0%
GCCTTCATTAGTAGAGAAGA+TGG + chr2_2:9217363-9217382 Msa0236270:intron 40.0%
AGATGGTAGAAACTAGGCTT+AGG + chr2_2:9217380-9217399 Msa0236270:intron 40.0%
AAACTAGGCTTAGGTGGTTT+GGG + chr2_2:9217389-9217408 Msa0236270:intron 40.0%
GGATTCATATCACTAGAGGT+AGG + chr2_2:9217436-9217455 Msa0236270:intron 40.0%
GGATCTAGAGATCAATGAGT+TGG + chr2_2:9217497-9217516 Msa0236270:intron 40.0%
! CAATGAGTTGGAGAAAGACA+TGG + chr2_2:9217509-9217528 Msa0236270:intron 40.0%
! ATAAGGCTTGGTTGTTGTTG+TGG + chr2_2:9217589-9217608 Msa0236270:intron 40.0%
! AAGAGCATATCCATAGTTGG+TGG + chr2_2:9218038-9218057 Msa0236270:CDS 40.0%
AACAACTTACGCTCTCATCT+TGG - chr2_2:9218084-9218103 None:intergenic 40.0%
! GATGAGAGCGTAAGTTGTTA+TGG + chr2_2:9218085-9218104 Msa0236270:intron 40.0%
!!! TAGTTCCGTTTTAAGATCGG+AGG + chr2_2:9218180-9218199 Msa0236270:intron 40.0%
GCTTTCCTCCGATCTTAAAA+CGG - chr2_2:9218188-9218207 None:intergenic 40.0%
ATGCCAAGCATAAAAGAAGG+TGG - chr2_2:9218212-9218231 None:intergenic 40.0%
AAGGCAATGCATTTAGTGCT+TGG + chr2_2:9218701-9218720 Msa0236270:intron 40.0%
GATTTGGCTGAGAATTTGCA+AGG + chr2_2:9218961-9218980 Msa0236270:CDS 40.0%
!! GAGTATTGGAATACCAGACA+AGG + chr2_2:9218983-9219002 Msa0236270:CDS 40.0%
TTCTCCATTGTTTATGACCC+GGG - chr2_2:9219167-9219186 None:intergenic 40.0%
CTTCTCCATTGTTTATGACC+CGG - chr2_2:9219168-9219187 None:intergenic 40.0%
! TTTATGACGCCCGTTTGTTT+TGG + chr2_2:9219200-9219219 Msa0236270:intron 40.0%
GTTATAGTGGCAGTTGTGAA+TGG + chr2_2:9219405-9219424 Msa0236270:intron 40.0%
! CTTTTAGGCTTTGCTGCATA+AGG - chr2_2:9219480-9219499 None:intergenic 40.0%
!! TTTGGTGTCCAGTGTTAAAG+AGG - chr2_2:9219619-9219638 None:intergenic 40.0%
TCTTTAACACTGGACACCAA+AGG + chr2_2:9219618-9219637 Msa0236270:intron 40.0%
GAACGTTCTCCTTTGTATAG+AGG - chr2_2:9220814-9220833 Msa0236280:CDS 40.0%
TGATATGAGTAGAAAGGCAG+CGG - chr2_2:9220986-9221005 Msa0236280:CDS 40.0%
CGATGGTGATATGAGTAGAA+AGG - chr2_2:9220992-9221011 Msa0236280:CDS 40.0%
!! GGCCGTTTTAGTCAATTTCA+AGG - chr2_2:9221085-9221104 Msa0236280:CDS 40.0%
CGTCGACAGAGATAAAGAAT+TGG - chr2_2:9221145-9221164 None:intergenic 40.0%
TGAAAGACAGAGAAAGAGAG+AGG + chr2_2:9221204-9221223 Msa0236270:intron 40.0%
CATGCAGCACTTAACTATAC+AGG - chr2_2:9221365-9221384 None:intergenic 40.0%
! CTGTATAGTTAAGTGCTGCA+TGG + chr2_2:9221363-9221382 Msa0236270:intron 40.0%
TTGGATCAAATCATCTGGCT+AGG - chr2_2:9221466-9221485 None:intergenic 40.0%
AGCCAGATGATTTGATCCAA+CGG + chr2_2:9221466-9221485 Msa0236270:intron 40.0%
GATTGGCGCCTAAAAATTCT+AGG + chr2_2:9221497-9221516 Msa0236270:intron 40.0%
GTGTCACCTCCAAAATTATC+AGG - chr2_2:9221721-9221740 None:intergenic 40.0%
ACTGTAAAATTCAGGGCTGT+TGG + chr2_2:9221795-9221814 Msa0236270:intron 40.0%
! AACCATGGACCATCTTTTAC+AGG - chr2_2:9222214-9222233 None:intergenic 40.0%
GTAAAAGATGGTCCATGGTT+CGG + chr2_2:9222214-9222233 Msa0236270:intron 40.0%
TAAACTGATCTACCGAACCA+TGG - chr2_2:9222229-9222248 None:intergenic 40.0%
GTTCGGTAGATCAGTTTAGA+GGG + chr2_2:9222231-9222250 Msa0236270:intron 40.0%
ACTGGATAACACTATCTCTC+GGG + chr2_2:9222581-9222600 Msa0236270:three_prime_UTR 40.0%
!! ATGTAACTTACATCGACTCC+GGG - chr2_2:9222662-9222681 None:intergenic 40.0%
! TGGCTAGATACTTGTTGATC+TGG + chr2_2:9222693-9222712 Msa0236270:three_prime_UTR 40.0%
! GCTTTGAATGAAGCTACTCC+TGG + chr2_2:9216550-9216569 Msa0236270:CDS 45.0%
GGAACACTTGGAAAGCAATG+AGG + chr2_2:9216732-9216751 Msa0236270:intron 45.0%
TGGTAGAAACTAGGCTTAGG+TGG + chr2_2:9217383-9217402 Msa0236270:intron 45.0%
GAAACTAGGCTTAGGTGGTT+TGG + chr2_2:9217388-9217407 Msa0236270:intron 45.0%
ATGGAGAGTAGATCAGATGG+AGG + chr2_2:9217413-9217432 Msa0236270:intron 45.0%
TGGAGAGTAGATCAGATGGA+GGG + chr2_2:9217414-9217433 Msa0236270:intron 45.0%
GAGGGGATTCATATCACTAG+AGG + chr2_2:9217432-9217451 Msa0236270:intron 45.0%
TTACATGAGCCAGAGATCAC+TGG + chr2_2:9217736-9217755 Msa0236270:intron 45.0%
CAGTTAATGCCAGTGATCTC+TGG - chr2_2:9217748-9217767 None:intergenic 45.0%
CTTACGCTCTCATCTTGGAA+GGG - chr2_2:9218079-9218098 None:intergenic 45.0%
ACTTACGCTCTCATCTTGGA+AGG - chr2_2:9218080-9218099 None:intergenic 45.0%
! GCACCACCTTCTTTTATGCT+TGG + chr2_2:9218206-9218225 Msa0236270:intron 45.0%
! GATTTCACAGGTTGGACTCT+AGG - chr2_2:9218350-9218369 None:intergenic 45.0%
ATCACCCTGATATCCAACCA+AGG - chr2_2:9218507-9218526 None:intergenic 45.0%
ATGTACCCGGGATTTAACCT+TGG + chr2_2:9218617-9218636 Msa0236270:intron 45.0%
TGTACCCGGGATTTAACCTT+GGG + chr2_2:9218618-9218637 Msa0236270:intron 45.0%
TACTCCCAAGGTTAAATCCC+GGG - chr2_2:9218625-9218644 None:intergenic 45.0%
CTACTCCCAAGGTTAAATCC+CGG - chr2_2:9218626-9218645 None:intergenic 45.0%
ACAAAGCATGCAAGCCATTC+AGG + chr2_2:9218844-9218863 Msa0236270:CDS 45.0%
ATGGATGAATGATACCGCCA+TGG + chr2_2:9220580-9220599 Msa0236270:intron 45.0%
TGGATGAATGATACCGCCAT+GGG + chr2_2:9220581-9220600 Msa0236270:intron 45.0%
!!! TTTTTGGGTAGAGGGTGTCA+AGG + chr2_2:9220641-9220660 Msa0236270:intron 45.0%
!!! TTTTGGGTAGAGGGTGTCAA+GGG + chr2_2:9220642-9220661 Msa0236270:intron 45.0%
!! CAGAGCTGGTATTTGGTTTG+TGG - chr2_2:9220718-9220737 None:intergenic 45.0%
TCGGAAACCTTCATCAGACT+CGG + chr2_2:9220861-9220880 Msa0236270:intron 45.0%
GTTCTTTCCGAGTCTGATGA+AGG - chr2_2:9220871-9220890 Msa0236280:CDS 45.0%
AGTCTCTTTCCCTTTGAACG+CGG + chr2_2:9220892-9220911 Msa0236270:intron 45.0%
GAGTAACAGAGGGAGTGAAT+CGG - chr2_2:9221055-9221074 Msa0236280:CDS 45.0%
AGGCACGTAAGAGTAACAGA+GGG - chr2_2:9221065-9221084 Msa0236280:CDS 45.0%
AAGGCACGTAAGAGTAACAG+AGG - chr2_2:9221066-9221085 Msa0236280:CDS 45.0%
TTCTTTATCTCTGTCGACGC+AGG + chr2_2:9221146-9221165 Msa0236270:intron 45.0%
CGGTCACATGCTTTCATTCT+TGG + chr2_2:9221244-9221263 Msa0236270:intron 45.0%
! TGTCACCATTTTCCCACAAG+TGG - chr2_2:9221296-9221315 None:intergenic 45.0%
GTCCGTTGGATCAAATCATC+TGG - chr2_2:9221471-9221490 None:intergenic 45.0%
ATCCAACGGACATGCTTGAT+TGG + chr2_2:9221480-9221499 Msa0236270:intron 45.0%
! GTGTCATTGCCTCATCTCAT+TGG + chr2_2:9221596-9221615 Msa0236270:intron 45.0%
TTCTTGTGTCTATGCCAGCA+TGG + chr2_2:9221623-9221642 Msa0236270:intron 45.0%
GACCTGTAAAAGATGGTCCA+TGG + chr2_2:9222209-9222228 Msa0236270:intron 45.0%
! GGTTCGGTAGATCAGTTTAG+AGG + chr2_2:9222230-9222249 Msa0236270:intron 45.0%
CGGGCGTAAAAGAATACAGT+TGG + chr2_2:9222600-9222619 Msa0236270:three_prime_UTR 45.0%
TTGGAACTGCGGAACTTAGC+AGG + chr2_2:9217237-9217256 Msa0236270:intron 50.0%
TGGAACTGCGGAACTTAGCA+GGG + chr2_2:9217238-9217257 Msa0236270:intron 50.0%
GGCATGGAGAGTAGATCAGA+TGG + chr2_2:9217410-9217429 Msa0236270:intron 50.0%
GGAGAGTAGATCAGATGGAG+GGG + chr2_2:9217415-9217434 Msa0236270:intron 50.0%
! AAGCCTTATCCCACCAAGTG+GGG - chr2_2:9217578-9217597 None:intergenic 50.0%
! CAAGCCTTATCCCACCAAGT+GGG - chr2_2:9217579-9217598 None:intergenic 50.0%
!! TCCATAGTTGGTGGAGCTGA+TGG + chr2_2:9218047-9218066 Msa0236270:CDS 50.0%
TCCATCAGCTCCACCAACTA+TGG - chr2_2:9218051-9218070 None:intergenic 50.0%
TCCATTGTTTATGACCCGGG+CGG - chr2_2:9219164-9219183 None:intergenic 50.0%
!! GAGCATTGAAGGGTTGCCTT+TGG - chr2_2:9219637-9219656 None:intergenic 50.0%
ATGAATGATACCGCCATGGG+TGG + chr2_2:9220584-9220603 Msa0236270:intron 50.0%
TTCTTCTTCGACACCACCCA+TGG - chr2_2:9220600-9220619 None:intergenic 50.0%
! ATGGGTGGTGTCGAAGAAGA+AGG + chr2_2:9220599-9220618 Msa0236270:intron 50.0%
GCGTTCAAAGGGAAAGAGAC+TGG - chr2_2:9220893-9220912 Msa0236280:CDS 50.0%
! GTGTTGACGGAGGAAATCGA+TGG - chr2_2:9221009-9221028 Msa0236280:CDS 50.0%
!! GGAGGTGAAGAAGGTGTTGA+CGG - chr2_2:9221022-9221041 Msa0236280:CDS 50.0%
GAGTGAATCGGAGCGAGATT+GGG - chr2_2:9221043-9221062 Msa0236280:CDS 50.0%
ACCTGATTGACGGCGATTGT+CGG - chr2_2:9221121-9221140 None:intergenic 50.0%
CAAGTGGCTGCAAGTTGTGT+TGG - chr2_2:9221280-9221299 None:intergenic 50.0%
ACACAACTTGCAGCCACTTG+TGG + chr2_2:9221280-9221299 Msa0236270:intron 50.0%
CACAACTTGCAGCCACTTGT+GGG + chr2_2:9221281-9221300 Msa0236270:intron 50.0%
TGCAGCCACTTGTGGGAAAA+TGG + chr2_2:9221288-9221307 Msa0236270:intron 50.0%
CCTGAGTAGCTTCGCCTTTA+AGG - chr2_2:9221765-9221784 None:intergenic 50.0%
CCTTAAAGGCGAAGCTACTC+AGG + chr2_2:9221762-9221781 Msa0236270:CDS 50.0%
CAGGTCCTAACAATCGGGTT+TGG - chr2_2:9222195-9222214 None:intergenic 50.0%
TACAGGACACGTGCTGAAAG+CGG + chr2_2:9222507-9222526 Msa0236270:intron 50.0%
GGTGGAGGTCTTTCACATGT+CGG + chr2_2:9222528-9222547 Msa0236270:CDS 50.0%
GTGGAGGTCTTTCACATGTC+GGG + chr2_2:9222529-9222548 Msa0236270:CDS 50.0%
CTACAACATCGCTTGCTCGG+TGG + chr2_2:9216355-9216374 Msa0236270:five_prime_UTR 55.0%
! GCTCGGTGGTGCAGTGAAAA+TGG + chr2_2:9216369-9216388 Msa0236270:exon 55.0%
! AGGCTTAGGTGGTTTGGGCA+TGG + chr2_2:9217394-9217413 Msa0236270:intron 55.0%
TTCATGTAGCCGACCCCACT+TGG + chr2_2:9217562-9217581 Msa0236270:intron 55.0%
CTTATCCCACCAAGTGGGGT+CGG - chr2_2:9217574-9217593 None:intergenic 55.0%
! CCAAGCCTTATCCCACCAAG+TGG - chr2_2:9217580-9217599 None:intergenic 55.0%
! CCACTTGGTGGGATAAGGCT+TGG + chr2_2:9217577-9217596 Msa0236270:intron 55.0%
ACCGCCCGGGTCATAAACAA+TGG + chr2_2:9219160-9219179 Msa0236270:intron 55.0%
TTCTTCGACACCACCCATGG+CGG - chr2_2:9220597-9220616 None:intergenic 55.0%
!! TAGAGGGTGTCAAGGGAAGG+AGG + chr2_2:9220649-9220668 Msa0236270:intron 55.0%
CTCTTTCCCTTTGAACGCGG+CGG + chr2_2:9220895-9220914 Msa0236270:intron 55.0%
GTCAAGGTCAGTGGCTGTGA+CGG - chr2_2:9220953-9220972 Msa0236280:CDS 55.0%
GATGGCTAGGTCAAGGTCAG+TGG - chr2_2:9220962-9220981 Msa0236280:CDS 55.0%
GAGTAGAAAGGCAGCGGTGA+TGG - chr2_2:9220980-9220999 Msa0236280:CDS 55.0%
!! GGTGAAGAAGGTGTTGACGG+AGG - chr2_2:9221019-9221038 Msa0236280:CDS 55.0%
GCGAGATTGGGAGGTGAAGA+AGG - chr2_2:9221031-9221050 Msa0236280:CDS 55.0%
TGAATCGGAGCGAGATTGGG+AGG - chr2_2:9221040-9221059 Msa0236280:CDS 55.0%
GGAGTGAATCGGAGCGAGAT+TGG - chr2_2:9221044-9221063 Msa0236280:CDS 55.0%
ATTGTCGGAAGCAAGTCGCG+AGG - chr2_2:9221106-9221125 None:intergenic 55.0%
TCCGACAATCGCCGTCAATC+AGG + chr2_2:9221117-9221136 Msa0236270:intron 55.0%
CGCCAATCAAGCATGTCCGT+TGG - chr2_2:9221485-9221504 None:intergenic 55.0%
ATGTAGCCGACCCCACTTGG+TGG + chr2_2:9217565-9217584 Msa0236270:intron 60.0%
TGTAGCCGACCCCACTTGGT+GGG + chr2_2:9217566-9217585 Msa0236270:intron 60.0%
! CGACCCCACTTGGTGGGATA+AGG + chr2_2:9217572-9217591 Msa0236270:intron 60.0%
! CTTTTACCCGTGCTACCGCC+CGG + chr2_2:9219146-9219165 Msa0236270:intron 60.0%
! TTTTACCCGTGCTACCGCCC+GGG + chr2_2:9219147-9219166 Msa0236270:intron 60.0%
TTATGACCCGGGCGGTAGCA+CGG - chr2_2:9219156-9219175 None:intergenic 60.0%
!! GGGTAGAGGGTGTCAAGGGA+AGG + chr2_2:9220646-9220665 Msa0236270:intron 60.0%
GCTGTGACGGCGGTTTCTGT+CGG - chr2_2:9220940-9220959 Msa0236280:CDS 60.0%
AAGGTCAGTGGCTGTGACGG+CGG - chr2_2:9220950-9220969 Msa0236280:CDS 60.0%
! CAGCGGTGATGGCTAGGTCA+AGG - chr2_2:9220969-9220988 Msa0236280:CDS 60.0%
! GAAAGGCAGCGGTGATGGCT+AGG - chr2_2:9220975-9220994 Msa0236280:CDS 60.0%
AGGACACGTGCTGAAAGCGG+TGG + chr2_2:9222510-9222529 Msa0236270:intron 60.0%
ACACGTGCTGAAAGCGGTGG+AGG + chr2_2:9222513-9222532 Msa0236270:CDS 60.0%
TATGACCCGGGCGGTAGCAC+GGG - chr2_2:9219155-9219174 None:intergenic 65.0%
!! AGAGCGCCGCCGCGTTCAAA+GGG - chr2_2:9220904-9220923 Msa0236280:CDS 65.0%
!! TAGAGCGCCGCCGCGTTCAA+AGG - chr2_2:9220905-9220924 Msa0236280:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 9216320 9222848 9216320 ID=Msa0236270;Name=Msa0236270
chr2_2 mRNA 9216320 9222848 9216320 ID=Msa0236270-mRNA-1;Parent=Msa0236270;Name=Msa0236270-mRNA-1;_AED=0.09;_eAED=0.09;_QI=68|1|1|1|0.87|0.77|9|294|204
chr2_2 exon 9216320 9216471 9216320 ID=Msa0236270-mRNA-1:exon:3977;Parent=Msa0236270-mRNA-1
chr2_2 exon 9216544 9216624 9216544 ID=Msa0236270-mRNA-1:exon:3978;Parent=Msa0236270-mRNA-1
chr2_2 exon 9216733 9216782 9216733 ID=Msa0236270-mRNA-1:exon:3979;Parent=Msa0236270-mRNA-1
chr2_2 exon 9218016 9218093 9218016 ID=Msa0236270-mRNA-1:exon:3980;Parent=Msa0236270-mRNA-1
chr2_2 exon 9218808 9218865 9218808 ID=Msa0236270-mRNA-1:exon:3981;Parent=Msa0236270-mRNA-1
chr2_2 exon 9218955 9219004 9218955 ID=Msa0236270-mRNA-1:exon:3982;Parent=Msa0236270-mRNA-1
chr2_2 exon 9221675 9221783 9221675 ID=Msa0236270-mRNA-1:exon:3983;Parent=Msa0236270-mRNA-1
chr2_2 exon 9221860 9221921 9221860 ID=Msa0236270-mRNA-1:exon:3984;Parent=Msa0236270-mRNA-1
chr2_2 exon 9222512 9222848 9222512 ID=Msa0236270-mRNA-1:exon:3985;Parent=Msa0236270-mRNA-1
chr2_2 five_prime_UTR 9216320 9216387 9216320 ID=Msa0236270-mRNA-1:five_prime_utr;Parent=Msa0236270-mRNA-1
chr2_2 CDS 9216388 9216471 9216388 ID=Msa0236270-mRNA-1:cds;Parent=Msa0236270-mRNA-1
chr2_2 CDS 9216544 9216624 9216544 ID=Msa0236270-mRNA-1:cds;Parent=Msa0236270-mRNA-1
chr2_2 CDS 9216733 9216782 9216733 ID=Msa0236270-mRNA-1:cds;Parent=Msa0236270-mRNA-1
chr2_2 CDS 9218016 9218093 9218016 ID=Msa0236270-mRNA-1:cds;Parent=Msa0236270-mRNA-1
chr2_2 CDS 9218808 9218865 9218808 ID=Msa0236270-mRNA-1:cds;Parent=Msa0236270-mRNA-1
chr2_2 CDS 9218955 9219004 9218955 ID=Msa0236270-mRNA-1:cds;Parent=Msa0236270-mRNA-1
chr2_2 CDS 9221675 9221783 9221675 ID=Msa0236270-mRNA-1:cds;Parent=Msa0236270-mRNA-1
chr2_2 CDS 9221860 9221921 9221860 ID=Msa0236270-mRNA-1:cds;Parent=Msa0236270-mRNA-1
chr2_2 CDS 9222512 9222554 9222512 ID=Msa0236270-mRNA-1:cds;Parent=Msa0236270-mRNA-1
chr2_2 three_prime_UTR 9222555 9222848 9222555 ID=Msa0236270-mRNA-1:three_prime_utr;Parent=Msa0236270-mRNA-1
Gene Sequence

>Msa0236270

ATGGCGTGTGTGCATGACCATAGCTGTGAAGACCATGATTGTTCCTCTGATTGGTCTCTCTACAAACACATTGATCTCGAAAAGGTCTCTGCTTTGAATGAAGCTACTCCTGGTAGTGCTAAATCAGTTTTCAAAGCTTGGGAACACCGTTTGAATACTTCTGGGGAACACTTGGAAAGCAATGAGGGTGATCCTGAGTTAATTGTATTCATTCCATTCACTTCGGACGTAAAGATTAAGAGCATATCCATAGTTGGTGGAGCTGATGGAACAAGCCCTTCCAAGATGAGAGCGTTCATCAATAGAGATGGCATTGACTTTTCAGATGCACAAAGCATGCAAGCCATTCAGGAATGGGATTTGGCTGAGAATTTGCAAGGAGTATTGGAATACCAGACAAGGTATTCTAAATTTCAAGGTGTGGGAAATATTACATTGCACTTTCCTGATAATTTTGGAGGTGACACTACCAAAGTACACTATATTGGCCTTAAAGGCGAAGCTACTCAGTTAAAGAGAGATGTCGTTGCCACTATTGTTTACGAGCTTATGCCGAATCCTTCTGATCACAAGACACGTGCTGAAAGCGGTGGAGGTCTTTCACATGTCGGGTGA

Protein sequence

>Msa0236270

MACVHDHSCEDHDCSSDWSLYKHIDLEKVSALNEATPGSAKSVFKAWEHRLNTSGEHLESNEGDPELIVFIPFTSDVKIKSISIVGGADGTSPSKMRAFINRDGIDFSDAQSMQAIQEWDLAENLQGVLEYQTRYSKFQGVGNITLHFPDNFGGDTTKVHYIGLKGEATQLKRDVVATIVYELMPNPSDHKTRAESGGGLSHVG*