Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600890 | XP_013455783.2 | 91.882 | 271 | 22 | 0 | 1 | 271 | 1 | 271 | 1.18e-180 | 507 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600890 | sp|Q94KL7|SILD_FORIN | 58.303 | 271 | 109 | 1 | 2 | 268 | 3 | 273 | 4.24e-105 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005270 | Msa0600890 | 0.800843 | 1.191368e-48 | -8.615850e-47 |
| Msa0007470 | Msa0600890 | 0.808805 | 2.585269e-50 | -8.615850e-47 |
| Msa0008220 | Msa0600890 | 0.805041 | 1.616183e-49 | -8.615850e-47 |
| Msa0015460 | Msa0600890 | 0.809813 | 1.571498e-50 | -8.615850e-47 |
| Msa0017320 | Msa0600890 | 0.835338 | 1.778375e-56 | -8.615850e-47 |
| Msa0043730 | Msa0600890 | 0.828776 | 7.450142e-55 | -8.615850e-47 |
| Msa0056060 | Msa0600890 | 0.803521 | 3.350396e-49 | -8.615850e-47 |
| Msa0061500 | Msa0600890 | 0.801139 | 1.036853e-48 | -8.615850e-47 |
| Msa0065650 | Msa0600890 | 0.819746 | 9.876208e-53 | -8.615850e-47 |
| Msa0072170 | Msa0600890 | 0.809385 | 1.942238e-50 | -8.615850e-47 |
| Msa0085720 | Msa0600890 | 0.800502 | 1.398544e-48 | -8.615850e-47 |
| Msa0090390 | Msa0600890 | 0.819868 | 9.264678e-53 | -8.615850e-47 |
| Msa0109590 | Msa0600890 | 0.809402 | 1.925719e-50 | -8.615850e-47 |
| Msa0111080 | Msa0600890 | 0.811756 | 5.971650e-51 | -8.615850e-47 |
| Msa0120540 | Msa0600890 | 0.803210 | 3.886938e-49 | -8.615850e-47 |
| Msa0124550 | Msa0600890 | 0.800895 | 1.162548e-48 | -8.615850e-47 |
| Msa0126880 | Msa0600890 | 0.803215 | 3.877615e-49 | -8.615850e-47 |
| Msa0130520 | Msa0600890 | 0.833679 | 4.643809e-56 | -8.615850e-47 |
| Msa0137870 | Msa0600890 | 0.809063 | 2.276653e-50 | -8.615850e-47 |
| Msa0138020 | Msa0600890 | 0.806271 | 8.920449e-50 | -8.615850e-47 |
| Msa0142280 | Msa0600890 | 0.833704 | 4.577779e-56 | -8.615850e-47 |
| Msa0142500 | Msa0600890 | 0.822608 | 2.163251e-53 | -8.615850e-47 |
| Msa0152560 | Msa0600890 | 0.811242 | 7.720249e-51 | -8.615850e-47 |
| Msa0154920 | Msa0600890 | 0.804417 | 2.182498e-49 | -8.615850e-47 |
| Msa0155340 | Msa0600890 | 0.810128 | 1.344621e-50 | -8.615850e-47 |
| Msa0171980 | Msa0600890 | 0.807498 | 4.908631e-50 | -8.615850e-47 |
| Msa0187490 | Msa0600890 | 0.819743 | 9.893704e-53 | -8.615850e-47 |
| Msa0187830 | Msa0600890 | 0.816916 | 4.320625e-52 | -8.615850e-47 |
| Msa0189610 | Msa0600890 | 0.804221 | 2.396774e-49 | -8.615850e-47 |
| Msa0202930 | Msa0600890 | 0.817765 | 2.782473e-52 | -8.615850e-47 |
| Msa0220080 | Msa0600890 | 0.818323 | 2.081251e-52 | -8.615850e-47 |
| Msa0223920 | Msa0600890 | 0.817145 | 3.837405e-52 | -8.615850e-47 |
| Msa0225470 | Msa0600890 | 0.816989 | 4.160821e-52 | -8.615850e-47 |
| Msa0229360 | Msa0600890 | 0.803483 | 3.411802e-49 | -8.615850e-47 |
| Msa0236070 | Msa0600890 | 0.803777 | 2.964165e-49 | -8.615850e-47 |
| Msa0436190 | Msa0600890 | 0.811779 | 5.903074e-51 | -8.615850e-47 |
| Msa0482180 | Msa0600890 | 0.821308 | 4.326987e-53 | -8.615850e-47 |
| Msa0240300 | Msa0600890 | 0.801331 | 9.471137e-49 | -8.615850e-47 |
| Msa0244140 | Msa0600890 | 0.829061 | 6.354210e-55 | -8.615850e-47 |
| Msa0244190 | Msa0600890 | 0.825444 | 4.671827e-54 | -8.615850e-47 |
| Msa0261360 | Msa0600890 | 0.802525 | 5.383102e-49 | -8.615850e-47 |
| Msa0265160 | Msa0600890 | 0.838578 | 2.646074e-57 | -8.615850e-47 |
| Msa0284450 | Msa0600890 | 0.820509 | 6.606459e-53 | -8.615850e-47 |
| Msa0299660 | Msa0600890 | 0.825208 | 5.313246e-54 | -8.615850e-47 |
| Msa0300150 | Msa0600890 | 0.804273 | 2.338152e-49 | -8.615850e-47 |
| Msa0311470 | Msa0600890 | 0.802001 | 6.899687e-49 | -8.615850e-47 |
| Msa0319290 | Msa0600890 | 0.800302 | 1.536015e-48 | -8.615850e-47 |
| Msa0340690 | Msa0600890 | 0.824699 | 7.006068e-54 | -8.615850e-47 |
| Msa0340710 | Msa0600890 | 0.817688 | 2.895718e-52 | -8.615850e-47 |
| Msa0485490 | Msa0600890 | 0.807970 | 3.895655e-50 | -8.615850e-47 |
| Msa0530650 | Msa0600890 | 0.803557 | 3.293603e-49 | -8.615850e-47 |
| Msa0534410 | Msa0600890 | 0.826198 | 3.094333e-54 | -8.615850e-47 |
| Msa0537770 | Msa0600890 | 0.811454 | 6.943747e-51 | -8.615850e-47 |
| Msa0545290 | Msa0600890 | 0.997082 | 1.328516e-236 | -8.615850e-47 |
| Msa0573580 | Msa0600890 | 0.812940 | 3.291660e-51 | -8.615850e-47 |
| Msa0582280 | Msa0600890 | 0.814591 | 1.425424e-51 | -8.615850e-47 |
| Msa0587190 | Msa0600890 | 0.820410 | 6.960215e-53 | -8.615850e-47 |
| Msa0594200 | Msa0600890 | 0.812971 | 3.241035e-51 | -8.615850e-47 |
| Msa0597000 | Msa0600890 | 0.807493 | 4.921634e-50 | -8.615850e-47 |
| Msa0600890 | Msa0626850 | 0.802993 | 4.309490e-49 | -8.615850e-47 |
| Msa0600890 | Msa0626990 | 0.811067 | 8.426731e-51 | -8.615850e-47 |
| Msa0600890 | Msa0627350 | 0.812993 | 3.205907e-51 | -8.615850e-47 |
| Msa0600890 | Msa0628290 | 0.801137 | 1.037653e-48 | -8.615850e-47 |
| Msa0600890 | Msa0630950 | 0.817288 | 3.563510e-52 | -8.615850e-47 |
| Msa0600890 | Msa0641320 | 0.827660 | 1.383480e-54 | -8.615850e-47 |
| Msa0600890 | Msa0641340 | 0.832180 | 1.095151e-55 | -8.615850e-47 |
| Msa0600890 | Msa0643320 | 0.811783 | 5.891905e-51 | -8.615850e-47 |
| Msa0600890 | Msa0654620 | 0.825559 | 4.387019e-54 | -8.615850e-47 |
| Msa0600890 | Msa0679550 | 0.833359 | 5.580497e-56 | -8.615850e-47 |
| Msa0600890 | Msa0679810 | 0.997504 | 1.018930e-243 | -8.615850e-47 |
| Msa0600890 | Msa0683140 | 0.813956 | 1.968845e-51 | -8.615850e-47 |
| Msa0600890 | Msa0683600 | 0.800587 | 1.343985e-48 | -8.615850e-47 |
| Msa0600890 | Msa0689780 | 0.827896 | 1.214607e-54 | -8.615850e-47 |
| Msa0600890 | Msa0705990 | 0.810565 | 1.082271e-50 | -8.615850e-47 |
| Msa0600890 | Msa0715410 | 0.828019 | 1.134587e-54 | -8.615850e-47 |
| Msa0600890 | Msa0720370 | 0.805994 | 1.020267e-49 | -8.615850e-47 |
| Msa0600890 | Msa0721340 | 0.821556 | 3.792212e-53 | -8.615850e-47 |
| Msa0600890 | Msa0729970 | 0.805818 | 1.110709e-49 | -8.615850e-47 |
| Msa0600890 | Msa0731180 | 0.815612 | 8.453756e-52 | -8.615850e-47 |
| Msa0600890 | Msa0742150 | 0.856046 | 4.192701e-62 | -8.615850e-47 |
| Msa0600890 | Msa0750850 | 0.809456 | 1.875697e-50 | -8.615850e-47 |
| Msa0600890 | Msa0754920 | 0.800259 | 1.567160e-48 | -8.615850e-47 |
| Msa0600890 | Msa0764920 | 0.806481 | 8.054489e-50 | -8.615850e-47 |
| Msa0600890 | Msa0771580 | 0.801360 | 9.340371e-49 | -8.615850e-47 |
| Msa0600890 | Msa0775560 | 0.837649 | 4.589215e-57 | -8.615850e-47 |
| Msa0600890 | Msa0786070 | 0.847340 | 1.230020e-59 | -8.615850e-47 |
| Msa0600890 | Msa0805920 | 0.844489 | 7.326257e-59 | -8.615850e-47 |
| Msa0600890 | Msa0809140 | 0.837189 | 6.020415e-57 | -8.615850e-47 |
| Msa0600890 | Msa0812950 | 0.824664 | 7.140012e-54 | -8.615850e-47 |
| Msa0600890 | Msa0823440 | 0.823421 | 1.398175e-53 | -8.615850e-47 |
| Msa0600890 | Msa0844110 | 0.805002 | 1.646867e-49 | -8.615850e-47 |
| Msa0600890 | Msa0849160 | 0.802759 | 4.817789e-49 | -8.615850e-47 |
| Msa0600890 | Msa0853440 | 0.810235 | 1.274731e-50 | -8.615850e-47 |
| Msa0600890 | Msa0861470 | 0.828311 | 9.648212e-55 | -8.615850e-47 |
| Msa0600890 | Msa0861570 | 0.816056 | 6.732929e-52 | -8.615850e-47 |
| Msa0600890 | Msa0862280 | 0.810081 | 1.376360e-50 | -8.615850e-47 |
| Msa0600890 | Msa0882400 | 0.804225 | 2.392073e-49 | -8.615850e-47 |
| Msa0600890 | Msa0901320 | 0.806605 | 7.585560e-50 | -8.615850e-47 |
| Msa0600890 | Msa0925840 | 0.822942 | 1.808588e-53 | -8.615850e-47 |
| Msa0600890 | Msa0932100 | 0.808589 | 2.874909e-50 | -8.615850e-47 |
| Msa0600890 | Msa0945100 | 0.807767 | 4.304520e-50 | -8.615850e-47 |
| Msa0600890 | Msa0945120 | 0.819928 | 8.977302e-53 | -8.615850e-47 |
| Msa0600890 | Msa0966050 | 0.800491 | 1.406005e-48 | -8.615850e-47 |
| Msa0600890 | Msa0970230 | 0.807685 | 4.480443e-50 | -8.615850e-47 |
| Msa0600890 | Msa0970480 | 0.807909 | 4.014106e-50 | -8.615850e-47 |
| Msa0600890 | Msa0980020 | 0.839723 | 1.335860e-57 | -8.615850e-47 |
| Msa0600890 | Msa0993240 | 0.819731 | 9.956356e-53 | -8.615850e-47 |
| Msa0600890 | Msa0994370 | 0.825455 | 4.643863e-54 | -8.615850e-47 |
| Msa0600890 | Msa1023300 | 0.802760 | 4.814203e-49 | -8.615850e-47 |
| Msa0600890 | Msa1036910 | 0.834349 | 3.155517e-56 | -8.615850e-47 |
| Msa0600890 | Msa1042660 | 0.815442 | 9.224840e-52 | -8.615850e-47 |
| Msa0600890 | Msa1062030 | 0.808771 | 2.628856e-50 | -8.615850e-47 |
| Msa0600890 | Msa1071320 | 0.815068 | 1.117145e-51 | -8.615850e-47 |
| Msa0600890 | Msa1077340 | 0.813841 | 2.086798e-51 | -8.615850e-47 |
| Msa0600890 | Msa1088290 | 0.801105 | 1.053594e-48 | -8.615850e-47 |
| Msa0600890 | Msa1107190 | 0.842174 | 3.038152e-58 | -8.615850e-47 |
| Msa0600890 | Msa1115280 | 0.823201 | 1.573606e-53 | -8.615850e-47 |
| Msa0600890 | Msa1150790 | 0.832938 | 7.102574e-56 | -8.615850e-47 |
| Msa0600890 | Msa1150800 | 0.800994 | 1.110072e-48 | -8.615850e-47 |
| Msa0600890 | Msa1150810 | 0.821024 | 5.030851e-53 | -8.615850e-47 |
| Msa0600890 | Msa1164020 | 0.853761 | 1.929847e-61 | -8.615850e-47 |
| Msa0600890 | Msa1172130 | -0.817032 | 4.069285e-52 | -8.615850e-47 |
| Msa0600890 | Msa1174310 | 0.807807 | 4.220952e-50 | -8.615850e-47 |
| Msa0600890 | Msa1176270 | 0.800409 | 1.460771e-48 | -8.615850e-47 |
| Msa0600890 | Msa1176360 | 0.801955 | 7.052011e-49 | -8.615850e-47 |
| Msa0600890 | Msa1177780 | 0.803632 | 3.178013e-49 | -8.615850e-47 |
| Msa0600890 | Msa1200250 | 0.806135 | 9.527470e-50 | -8.615850e-47 |
| Msa0600890 | Msa1218580 | 0.800430 | 1.446375e-48 | -8.615850e-47 |
| Msa0600890 | Msa1224200 | 0.826934 | 2.065236e-54 | -8.615850e-47 |
| Msa0600890 | Msa1225100 | 0.807441 | 5.047062e-50 | -8.615850e-47 |
| Msa0600890 | Msa1229610 | 0.853573 | 2.185212e-61 | -8.615850e-47 |
| Msa0600890 | Msa1246700 | 0.810175 | 1.313712e-50 | -8.615850e-47 |
| Msa0600890 | Msa1250110 | 0.811837 | 5.732895e-51 | -8.615850e-47 |
| Msa0600890 | Msa1250730 | 0.809340 | 1.986184e-50 | -8.615850e-47 |
| Msa0600890 | Msa1258370 | 0.811532 | 6.679985e-51 | -8.615850e-47 |
| Msa0600890 | Msa1259530 | 0.818709 | 1.701672e-52 | -8.615850e-47 |
| Msa0600890 | Msa1270660 | 0.811394 | 7.155553e-51 | -8.615850e-47 |
| Msa0600890 | Msa1270730 | 0.812069 | 5.103404e-51 | -8.615850e-47 |
| Msa0600890 | Msa1272320 | 0.849624 | 2.869896e-60 | -8.615850e-47 |
| Msa0600890 | Msa1276340 | 0.824816 | 6.575839e-54 | -8.615850e-47 |
| Msa0600890 | Msa1279480 | 0.803608 | 3.213586e-49 | -8.615850e-47 |
| Msa0600890 | Msa1310220 | 0.826666 | 2.394149e-54 | -8.615850e-47 |
| Msa0600890 | Msa1314770 | 0.817284 | 3.571666e-52 | -8.615850e-47 |
| Msa0600890 | Msa1329870 | 0.811126 | 8.182188e-51 | -8.615850e-47 |
| Msa0600890 | Msa1332050 | 0.804515 | 2.081689e-49 | -8.615850e-47 |
| Msa0600890 | Msa1335230 | 0.800751 | 1.244412e-48 | -8.615850e-47 |
| Msa0600890 | Msa1355890 | 0.841924 | 3.537565e-58 | -8.615850e-47 |
| Msa0600890 | Msa1363700 | 0.804987 | 1.658898e-49 | -8.615850e-47 |
| Msa0600890 | Msa1364160 | 0.802751 | 4.834924e-49 | -8.615850e-47 |
| Msa0600890 | Msa1405220 | 0.813917 | 2.007584e-51 | -8.615850e-47 |
| Msa0600890 | Msa1420270 | 0.828993 | 6.598493e-55 | -8.615850e-47 |
| Msa0600890 | Msa1421210 | 0.808771 | 2.629204e-50 | -8.615850e-47 |
| Msa0600890 | Msa1428780 | 0.805635 | 1.213700e-49 | -8.615850e-47 |
| Msa0600890 | Msa1436600 | 0.801038 | 1.087108e-48 | -8.615850e-47 |
| Msa0600890 | Msa1443610 | 0.819102 | 1.384874e-52 | -8.615850e-47 |
| Msa0600890 | Msa1457160 | 0.845851 | 3.137379e-59 | -8.615850e-47 |
| Msa0600890 | Msa1463600 | 0.830564 | 2.735352e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600890 | MtrunA17_Chr4g0025971 | 91.882 | 271 | 22 | 0 | 1 | 271 | 1 | 271 | 0.0 | 507 |
| Msa0600890 | MtrunA17_Chr4g0026001 | 84.133 | 271 | 43 | 0 | 1 | 271 | 1 | 271 | 1.60e-172 | 477 |
| Msa0600890 | MtrunA17_Chr4g0025981 | 82.143 | 252 | 45 | 0 | 15 | 266 | 42 | 293 | 1.27e-152 | 429 |
| Msa0600890 | MtrunA17_Chr4g0044111 | 60.305 | 262 | 101 | 1 | 12 | 270 | 11 | 272 | 5.60e-107 | 311 |
| Msa0600890 | MtrunA17_Chr7g0266981 | 60.305 | 262 | 101 | 1 | 12 | 270 | 11 | 272 | 1.06e-106 | 310 |
| Msa0600890 | MtrunA17_Chr7g0266891 | 58.462 | 260 | 105 | 1 | 14 | 270 | 7 | 266 | 3.53e-101 | 296 |
| Msa0600890 | MtrunA17_Chr4g0044131 | 55.731 | 253 | 109 | 1 | 12 | 261 | 6 | 258 | 3.16e-89 | 266 |
| Msa0600890 | MtrunA17_Chr7g0244061 | 50.909 | 275 | 108 | 5 | 12 | 262 | 27 | 298 | 9.65e-88 | 263 |
| Msa0600890 | MtrunA17_Chr7g0268591 | 50.746 | 268 | 122 | 4 | 12 | 270 | 31 | 297 | 2.58e-82 | 249 |
| Msa0600890 | MtrunA17_Chr7g0252031 | 50.000 | 270 | 120 | 5 | 12 | 269 | 33 | 299 | 7.19e-79 | 240 |
| Msa0600890 | MtrunA17_Chr2g0324021 | 50.000 | 254 | 122 | 3 | 12 | 261 | 4 | 256 | 1.04e-78 | 239 |
| Msa0600890 | MtrunA17_Chr7g0270441 | 49.035 | 259 | 126 | 3 | 12 | 266 | 4 | 260 | 1.55e-78 | 238 |
| Msa0600890 | MtrunA17_Chr7g0270451 | 48.627 | 255 | 126 | 3 | 12 | 262 | 4 | 257 | 1.67e-76 | 233 |
| Msa0600890 | MtrunA17_Chr6g0459261 | 45.489 | 266 | 139 | 4 | 1 | 261 | 13 | 277 | 4.69e-75 | 230 |
| Msa0600890 | MtrunA17_Chr7g0267011 | 60.326 | 184 | 73 | 0 | 12 | 195 | 6 | 189 | 1.36e-74 | 226 |
| Msa0600890 | MtrunA17_Chr7g0267001 | 50.588 | 255 | 101 | 4 | 12 | 261 | 6 | 240 | 1.47e-74 | 228 |
| Msa0600890 | MtrunA17_Chr7g0266991 | 52.814 | 231 | 89 | 2 | 11 | 238 | 22 | 235 | 7.20e-74 | 226 |
| Msa0600890 | MtrunA17_Chr3g0084871 | 48.496 | 266 | 127 | 2 | 12 | 267 | 14 | 279 | 3.16e-73 | 225 |
| Msa0600890 | MtrunA17_Chr4g0040371 | 46.241 | 266 | 125 | 4 | 10 | 262 | 15 | 275 | 2.33e-71 | 221 |
| Msa0600890 | MtrunA17_Chr6g0459281 | 45.349 | 258 | 136 | 3 | 8 | 260 | 7 | 264 | 2.85e-70 | 217 |
| Msa0600890 | MtrunA17_Chr6g0459331 | 46.008 | 263 | 136 | 4 | 1 | 258 | 1 | 262 | 6.01e-69 | 214 |
| Msa0600890 | MtrunA17_Chr6g0459301 | 43.478 | 253 | 138 | 3 | 13 | 260 | 13 | 265 | 2.57e-68 | 212 |
| Msa0600890 | MtrunA17_Chr6g0459271 | 44.361 | 266 | 142 | 4 | 1 | 261 | 1 | 265 | 8.64e-67 | 208 |
| Msa0600890 | MtrunA17_Chr6g0459351 | 46.032 | 252 | 127 | 5 | 13 | 257 | 12 | 261 | 1.05e-66 | 208 |
| Msa0600890 | MtrunA17_Chr4g0044121 | 56.983 | 179 | 74 | 1 | 95 | 270 | 1 | 179 | 2.79e-63 | 196 |
| Msa0600890 | MtrunA17_Chr6g0463951 | 49.419 | 172 | 82 | 3 | 95 | 262 | 1 | 171 | 7.45e-44 | 147 |
| Msa0600890 | MtrunA17_Chr7g0270471 | 47.973 | 148 | 73 | 2 | 121 | 264 | 1 | 148 | 1.77e-39 | 134 |
| Msa0600890 | MtrunA17_Chr3g0122901 | 30.709 | 254 | 168 | 5 | 8 | 257 | 69 | 318 | 6.35e-34 | 125 |
| Msa0600890 | MtrunA17_Chr4g0028921 | 31.136 | 273 | 176 | 7 | 4 | 267 | 1 | 270 | 1.37e-29 | 112 |
| Msa0600890 | MtrunA17_Chr3g0142651 | 43.182 | 132 | 70 | 1 | 95 | 221 | 1 | 132 | 1.63e-28 | 105 |
| Msa0600890 | MtrunA17_Chr1g0191751 | 33.858 | 254 | 154 | 6 | 13 | 256 | 100 | 349 | 1.85e-28 | 111 |
| Msa0600890 | MtrunA17_Chr4g0028911 | 30.798 | 263 | 170 | 7 | 14 | 267 | 11 | 270 | 2.95e-27 | 106 |
| Msa0600890 | MtrunA17_Chr7g0270461 | 51.020 | 98 | 48 | 0 | 12 | 109 | 44 | 141 | 9.19e-27 | 101 |
| Msa0600890 | MtrunA17_Chr7g0272961 | 30.196 | 255 | 162 | 7 | 13 | 256 | 39 | 288 | 8.61e-26 | 103 |
| Msa0600890 | MtrunA17_Chr4g0074511 | 32.453 | 265 | 158 | 10 | 9 | 259 | 35 | 292 | 3.63e-24 | 98.6 |
| Msa0600890 | MtrunA17_Chr1g0171831 | 30.040 | 253 | 158 | 7 | 11 | 247 | 11 | 260 | 6.08e-23 | 94.7 |
| Msa0600890 | MtrunA17_Chr7g0259521 | 28.986 | 276 | 165 | 10 | 1 | 262 | 1 | 259 | 7.86e-23 | 94.4 |
| Msa0600890 | MtrunA17_Chr0c30g0494101 | 32.331 | 266 | 155 | 11 | 9 | 259 | 35 | 290 | 1.48e-22 | 94.4 |
| Msa0600890 | MtrunA17_Chr3g0112261 | 29.200 | 250 | 170 | 6 | 14 | 259 | 19 | 265 | 2.47e-21 | 90.5 |
| Msa0600890 | MtrunA17_Chr8g0357481 | 31.298 | 262 | 152 | 8 | 14 | 257 | 14 | 265 | 4.51e-21 | 90.5 |
| Msa0600890 | MtrunA17_Chr4g0045041 | 33.202 | 253 | 141 | 8 | 16 | 253 | 6 | 245 | 1.29e-20 | 91.3 |
| Msa0600890 | MtrunA17_Chr3g0112151 | 30.196 | 255 | 169 | 8 | 14 | 264 | 86 | 335 | 4.22e-20 | 88.2 |
| Msa0600890 | MtrunA17_Chr7g0239511 | 29.259 | 270 | 176 | 8 | 1 | 259 | 1 | 266 | 1.51e-19 | 85.5 |
| Msa0600890 | MtrunA17_Chr3g0112271 | 28.137 | 263 | 178 | 6 | 8 | 264 | 9 | 266 | 1.86e-19 | 85.5 |
| Msa0600890 | MtrunA17_Chr4g0075531 | 26.506 | 249 | 175 | 6 | 12 | 257 | 5 | 248 | 6.56e-19 | 83.6 |
| Msa0600890 | MtrunA17_Chr4g0045061 | 30.859 | 256 | 143 | 8 | 16 | 253 | 6 | 245 | 6.62e-19 | 86.3 |
| Msa0600890 | MtrunA17_Chr4g0054341 | 29.670 | 182 | 124 | 3 | 15 | 195 | 3 | 181 | 3.18e-18 | 82.0 |
| Msa0600890 | MtrunA17_Chr3g0112141 | 27.451 | 255 | 176 | 7 | 14 | 264 | 17 | 266 | 8.76e-18 | 80.9 |
| Msa0600890 | MtrunA17_Chr7g0239491 | 27.668 | 253 | 171 | 7 | 14 | 258 | 15 | 263 | 8.89e-18 | 80.9 |
| Msa0600890 | MtrunA17_Chr3g0112171 | 30.000 | 260 | 163 | 12 | 14 | 264 | 15 | 264 | 2.28e-17 | 79.7 |
| Msa0600890 | MtrunA17_Chr7g0239481 | 30.040 | 253 | 164 | 7 | 14 | 257 | 15 | 263 | 5.21e-17 | 78.6 |
| Msa0600890 | MtrunA17_Chr4g0032141 | 29.008 | 262 | 175 | 9 | 8 | 264 | 50 | 305 | 7.19e-17 | 79.0 |
| Msa0600890 | MtrunA17_Chr7g0259531 | 27.165 | 254 | 170 | 6 | 14 | 257 | 11 | 259 | 1.98e-16 | 77.0 |
| Msa0600890 | MtrunA17_Chr8g0386171 | 27.027 | 259 | 144 | 6 | 14 | 235 | 52 | 302 | 3.02e-16 | 77.8 |
| Msa0600890 | MtrunA17_Chr7g0239501 | 28.148 | 270 | 179 | 8 | 1 | 259 | 1 | 266 | 1.11e-15 | 75.1 |
| Msa0600890 | MtrunA17_Chr3g0124471 | 30.556 | 180 | 117 | 4 | 18 | 195 | 30 | 203 | 9.97e-15 | 72.8 |
| Msa0600890 | MtrunA17_Chr4g0032181 | 28.426 | 197 | 126 | 6 | 70 | 259 | 59 | 247 | 1.47e-14 | 71.6 |
| Msa0600890 | MtrunA17_Chr8g0386201 | 28.962 | 183 | 124 | 4 | 16 | 195 | 47 | 226 | 4.05e-14 | 71.2 |
| Msa0600890 | MtrunA17_Chr7g0239451 | 26.482 | 253 | 175 | 5 | 14 | 258 | 16 | 265 | 5.86e-14 | 70.1 |
| Msa0600890 | MtrunA17_Chr3g0124481 | 30.120 | 166 | 109 | 3 | 31 | 195 | 29 | 188 | 6.67e-14 | 70.1 |
| Msa0600890 | MtrunA17_Chr8g0355281 | 27.928 | 222 | 145 | 4 | 20 | 235 | 75 | 287 | 7.24e-13 | 67.8 |
| Msa0600890 | MtrunA17_Chr1g0182511 | 27.306 | 271 | 175 | 8 | 1 | 257 | 1 | 263 | 8.26e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600890 | AT3G51680.1 | 52.190 | 274 | 110 | 6 | 12 | 266 | 30 | 301 | 1.17e-88 | 266 |
| Msa0600890 | AT3G26760.1 | 46.591 | 264 | 129 | 3 | 6 | 258 | 28 | 290 | 1.38e-78 | 240 |
| Msa0600890 | AT2G47140.1 | 48.810 | 252 | 124 | 3 | 12 | 259 | 4 | 254 | 2.87e-77 | 235 |
| Msa0600890 | AT3G26770.1 | 49.219 | 256 | 120 | 3 | 12 | 258 | 39 | 293 | 9.22e-77 | 236 |
| Msa0600890 | AT1G52340.1 | 48.889 | 270 | 123 | 3 | 12 | 267 | 16 | 284 | 1.04e-76 | 234 |
| Msa0600890 | AT4G03140.1 | 52.941 | 255 | 111 | 3 | 12 | 258 | 76 | 329 | 2.68e-75 | 233 |
| Msa0600890 | AT3G29250.2 | 47.222 | 252 | 126 | 4 | 13 | 259 | 5 | 254 | 1.22e-72 | 223 |
| Msa0600890 | AT2G47130.1 | 48.016 | 252 | 123 | 4 | 13 | 259 | 5 | 253 | 2.09e-72 | 223 |
| Msa0600890 | AT3G29250.3 | 47.222 | 252 | 126 | 4 | 13 | 259 | 41 | 290 | 4.66e-72 | 223 |
| Msa0600890 | AT3G29250.1 | 47.059 | 255 | 127 | 5 | 11 | 259 | 40 | 292 | 3.23e-71 | 221 |
| Msa0600890 | AT2G47120.2 | 45.882 | 255 | 131 | 5 | 9 | 259 | 2 | 253 | 1.44e-69 | 216 |
| Msa0600890 | AT2G47120.1 | 46.215 | 251 | 128 | 5 | 13 | 259 | 5 | 252 | 6.39e-69 | 214 |
| Msa0600890 | AT3G29260.1 | 45.455 | 253 | 130 | 4 | 12 | 259 | 4 | 253 | 2.13e-68 | 213 |
| Msa0600890 | AT3G42960.1 | 44.151 | 265 | 131 | 6 | 7 | 258 | 1 | 261 | 4.24e-59 | 189 |
| Msa0600890 | AT3G55290.2 | 33.203 | 256 | 159 | 7 | 14 | 259 | 17 | 270 | 1.46e-31 | 118 |
| Msa0600890 | AT3G55290.1 | 33.203 | 256 | 159 | 7 | 14 | 259 | 18 | 271 | 1.63e-31 | 118 |
| Msa0600890 | AT1G63380.3 | 32.422 | 256 | 162 | 6 | 14 | 259 | 15 | 269 | 1.79e-30 | 115 |
| Msa0600890 | AT1G63380.1 | 32.422 | 256 | 162 | 6 | 14 | 259 | 17 | 271 | 1.94e-30 | 115 |
| Msa0600890 | AT1G63380.2 | 32.422 | 256 | 162 | 6 | 14 | 259 | 22 | 276 | 2.27e-30 | 115 |
| Msa0600890 | AT1G63380.4 | 32.422 | 256 | 162 | 6 | 14 | 259 | 19 | 273 | 2.30e-30 | 115 |
| Msa0600890 | AT2G17845.1 | 31.783 | 258 | 163 | 6 | 14 | 259 | 47 | 303 | 5.00e-30 | 115 |
| Msa0600890 | AT1G62610.2 | 31.250 | 256 | 165 | 6 | 14 | 259 | 13 | 267 | 1.29e-29 | 113 |
| Msa0600890 | AT1G62610.1 | 31.250 | 256 | 165 | 6 | 14 | 259 | 14 | 268 | 1.35e-29 | 113 |
| Msa0600890 | AT1G62610.3 | 31.250 | 256 | 165 | 6 | 14 | 259 | 15 | 269 | 1.41e-29 | 113 |
| Msa0600890 | AT1G62610.4 | 31.250 | 256 | 165 | 6 | 14 | 259 | 19 | 273 | 1.86e-29 | 112 |
| Msa0600890 | AT1G24360.1 | 29.457 | 258 | 164 | 6 | 11 | 259 | 71 | 319 | 2.82e-29 | 113 |
| Msa0600890 | AT3G55310.1 | 32.422 | 256 | 161 | 7 | 14 | 259 | 17 | 270 | 5.77e-29 | 111 |
| Msa0600890 | AT3G46170.1 | 31.890 | 254 | 161 | 7 | 13 | 256 | 25 | 276 | 9.26e-29 | 111 |
| Msa0600890 | AT3G05260.1 | 29.961 | 257 | 165 | 6 | 13 | 259 | 36 | 287 | 3.51e-25 | 101 |
| Msa0600890 | AT1G54870.2 | 31.890 | 254 | 159 | 7 | 13 | 256 | 83 | 332 | 4.25e-25 | 102 |
| Msa0600890 | AT1G54870.1 | 31.890 | 254 | 159 | 7 | 13 | 256 | 81 | 330 | 4.26e-25 | 102 |
| Msa0600890 | AT2G30670.1 | 30.000 | 260 | 175 | 4 | 14 | 270 | 7 | 262 | 2.54e-24 | 99.0 |
| Msa0600890 | AT2G29310.1 | 31.200 | 250 | 165 | 5 | 14 | 259 | 7 | 253 | 4.44e-24 | 98.2 |
| Msa0600890 | AT2G29340.2 | 29.528 | 254 | 172 | 4 | 14 | 264 | 7 | 256 | 8.78e-24 | 97.4 |
| Msa0600890 | AT2G47150.1 | 31.579 | 247 | 117 | 7 | 14 | 259 | 1 | 196 | 1.04e-23 | 95.5 |
| Msa0600890 | AT2G29340.1 | 29.528 | 254 | 172 | 4 | 14 | 264 | 7 | 256 | 1.83e-23 | 97.4 |
| Msa0600890 | AT1G07450.1 | 29.921 | 254 | 170 | 5 | 14 | 264 | 8 | 256 | 2.95e-23 | 95.9 |
| Msa0600890 | AT5G06060.1 | 29.804 | 255 | 170 | 6 | 14 | 264 | 9 | 258 | 4.28e-23 | 95.5 |
| Msa0600890 | AT2G29330.1 | 28.906 | 256 | 171 | 6 | 14 | 264 | 7 | 256 | 3.70e-22 | 92.8 |
| Msa0600890 | AT2G29300.1 | 31.746 | 252 | 162 | 7 | 14 | 259 | 7 | 254 | 5.43e-22 | 92.4 |
| Msa0600890 | AT5G18210.1 | 28.788 | 264 | 170 | 6 | 7 | 257 | 1 | 259 | 6.43e-22 | 92.4 |
| Msa0600890 | AT1G07440.1 | 28.346 | 254 | 174 | 5 | 14 | 264 | 12 | 260 | 1.26e-21 | 91.7 |
| Msa0600890 | AT2G29300.2 | 31.474 | 251 | 162 | 7 | 14 | 258 | 7 | 253 | 2.33e-21 | 91.3 |
| Msa0600890 | AT2G29370.1 | 27.799 | 259 | 170 | 6 | 14 | 264 | 16 | 265 | 3.37e-21 | 90.5 |
| Msa0600890 | AT2G29290.2 | 27.559 | 254 | 177 | 4 | 14 | 264 | 7 | 256 | 6.61e-21 | 89.7 |
| Msa0600890 | AT5G50590.2 | 33.520 | 179 | 108 | 5 | 13 | 185 | 44 | 217 | 1.34e-20 | 88.6 |
| Msa0600890 | AT5G50690.2 | 33.520 | 179 | 108 | 5 | 13 | 185 | 44 | 217 | 1.34e-20 | 88.6 |
| Msa0600890 | AT2G29260.1 | 28.090 | 267 | 183 | 6 | 2 | 264 | 56 | 317 | 1.49e-20 | 89.7 |
| Msa0600890 | AT4G13180.1 | 30.147 | 272 | 168 | 9 | 1 | 259 | 1 | 263 | 2.11e-20 | 88.2 |
| Msa0600890 | AT5G10050.1 | 31.148 | 183 | 118 | 4 | 15 | 195 | 6 | 182 | 3.01e-20 | 88.2 |
| Msa0600890 | AT5G50590.1 | 33.520 | 179 | 108 | 5 | 13 | 185 | 44 | 217 | 5.67e-20 | 87.8 |
| Msa0600890 | AT5G50690.1 | 33.520 | 179 | 108 | 5 | 13 | 185 | 44 | 217 | 5.67e-20 | 87.8 |
| Msa0600890 | AT2G29150.1 | 29.921 | 254 | 170 | 6 | 14 | 264 | 16 | 264 | 7.28e-20 | 87.0 |
| Msa0600890 | AT1G10310.1 | 32.536 | 209 | 135 | 5 | 1 | 207 | 3 | 207 | 1.01e-19 | 85.9 |
| Msa0600890 | AT2G29350.1 | 28.626 | 262 | 179 | 5 | 6 | 264 | 7 | 263 | 1.22e-19 | 86.3 |
| Msa0600890 | AT4G05530.1 | 30.196 | 255 | 158 | 9 | 12 | 257 | 7 | 250 | 1.77e-19 | 85.5 |
| Msa0600890 | AT2G29340.3 | 31.771 | 192 | 126 | 3 | 14 | 202 | 7 | 196 | 4.27e-19 | 83.6 |
| Msa0600890 | AT2G29340.4 | 31.771 | 192 | 126 | 3 | 14 | 202 | 7 | 196 | 4.27e-19 | 83.6 |
| Msa0600890 | AT2G29360.1 | 27.863 | 262 | 166 | 7 | 14 | 264 | 16 | 265 | 5.32e-19 | 84.7 |
| Msa0600890 | AT2G29320.1 | 29.434 | 265 | 165 | 6 | 11 | 264 | 10 | 263 | 9.56e-19 | 84.0 |
| Msa0600890 | AT5G50770.1 | 33.171 | 205 | 130 | 6 | 16 | 216 | 47 | 248 | 2.89e-18 | 83.6 |
| Msa0600890 | AT5G18210.2 | 28.205 | 273 | 173 | 7 | 7 | 266 | 1 | 263 | 2.94e-18 | 82.8 |
| Msa0600890 | AT5G65205.1 | 32.973 | 185 | 112 | 6 | 15 | 195 | 7 | 183 | 3.48e-18 | 82.4 |
| Msa0600890 | AT3G47350.1 | 29.851 | 201 | 125 | 6 | 16 | 208 | 46 | 238 | 6.81e-18 | 82.0 |
| Msa0600890 | AT3G47350.2 | 29.851 | 201 | 125 | 6 | 16 | 208 | 46 | 238 | 6.83e-18 | 82.4 |
| Msa0600890 | AT1G49670.1 | 31.687 | 243 | 142 | 7 | 16 | 244 | 6 | 238 | 8.01e-18 | 83.6 |
| Msa0600890 | AT1G49670.2 | 31.687 | 243 | 142 | 7 | 16 | 244 | 6 | 238 | 8.13e-18 | 83.6 |
| Msa0600890 | AT2G29310.3 | 32.292 | 192 | 125 | 3 | 14 | 202 | 7 | 196 | 3.02e-17 | 78.2 |
| Msa0600890 | AT3G12800.1 | 30.075 | 266 | 155 | 9 | 14 | 259 | 10 | 264 | 4.28e-17 | 79.7 |
| Msa0600890 | AT2G29310.2 | 29.464 | 224 | 151 | 5 | 40 | 259 | 31 | 251 | 1.22e-16 | 77.8 |
| Msa0600890 | AT5G50700.1 | 27.391 | 230 | 150 | 7 | 14 | 235 | 45 | 265 | 1.92e-16 | 78.6 |
| Msa0600890 | AT5G50600.1 | 27.391 | 230 | 150 | 7 | 14 | 235 | 45 | 265 | 1.92e-16 | 78.6 |
| Msa0600890 | AT3G47360.1 | 30.102 | 196 | 121 | 6 | 17 | 204 | 48 | 235 | 6.22e-16 | 76.6 |
| Msa0600890 | AT3G04000.1 | 27.675 | 271 | 179 | 6 | 1 | 256 | 1 | 269 | 8.93e-16 | 75.5 |
| Msa0600890 | AT2G29290.1 | 27.041 | 196 | 138 | 3 | 70 | 264 | 48 | 239 | 4.54e-15 | 73.2 |
| Msa0600890 | AT2G29350.2 | 29.949 | 197 | 133 | 3 | 9 | 202 | 10 | 204 | 5.12e-15 | 72.8 |
| Msa0600890 | AT3G03980.1 | 26.354 | 277 | 176 | 7 | 1 | 257 | 1 | 269 | 2.30e-14 | 71.6 |
| Msa0600890 | AT5G04900.1 | 31.361 | 169 | 111 | 2 | 20 | 183 | 83 | 251 | 2.54e-14 | 72.4 |
| Msa0600890 | AT2G29350.3 | 29.082 | 196 | 133 | 4 | 70 | 264 | 35 | 225 | 4.04e-14 | 70.5 |
| Msa0600890 | AT2G29320.3 | 32.308 | 195 | 124 | 5 | 11 | 200 | 10 | 201 | 5.97e-14 | 69.3 |
Find 90 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCTTGGGGCTTTATTTAA+TGG | 0.186274 | 4_2:-42964736 | Msa0600890:five_prime_UTR |
| ATTCATTCATTATTGGTAAA+TGG | 0.225496 | 4_2:-42964894 | None:intergenic |
| AGCTTGGGCCATTTGGTATT+CGG | 0.232114 | 4_2:-42963507 | Msa0600890:CDS |
| GCAGCTTCAGCCACATCTTT+TGG | 0.275458 | 4_2:+42963370 | None:intergenic |
| AACTTGACTGGCGTCTTTCT+TGG | 0.291159 | 4_2:-42963682 | Msa0600890:CDS |
| ACAAATTTCTTTAAGCTTGA+TGG | 0.305258 | 4_2:-42963442 | Msa0600890:CDS |
| TTTAATCACATCTTCAAATT+CGG | 0.341039 | 4_2:+42963708 | None:intergenic |
| GATGTTTATTCTAACCTAAA+AGG | 0.341199 | 4_2:-42963406 | Msa0600890:CDS |
| GCTTGGGCCATTTGGTATTC+GGG | 0.360522 | 4_2:-42963506 | Msa0600890:CDS |
| GCCATCGAGCTTGGGCCATT+TGG | 0.371069 | 4_2:-42963514 | Msa0600890:CDS |
| GATATCTAGTTTACCGTACT+TGG | 0.373680 | 4_2:+42963792 | None:intergenic |
| TTCTTTAAGCTTGATGGTGG+TGG | 0.385481 | 4_2:-42963436 | Msa0600890:CDS |
| CTTGGAAACGGTTGTGTTCA+CGG | 0.391770 | 4_2:+42963810 | None:intergenic |
| TCTTTAAGCTTGATGGTGGT+GGG | 0.398255 | 4_2:-42963435 | Msa0600890:CDS |
| GGCTGAAGCTGCTCTGTACT+TGG | 0.402325 | 4_2:-42963359 | Msa0600890:CDS |
| GGTCATAATCTTGTCATAGA+TGG | 0.407106 | 4_2:-42963310 | Msa0600890:CDS |
| CTAATATGTAGTTGCCTTCG+TGG | 0.420004 | 4_2:+42964796 | None:intergenic |
| AACTTGTTTATACCTTCTTA+AGG | 0.422188 | 4_2:+42964601 | None:intergenic |
| ATTGATGATAAAGTAATTGT+TGG | 0.424504 | 4_2:-42963179 | Msa0600890:three_prime_UTR |
| TAGAGTGTCCTTTGTCGTCT+TGG | 0.425344 | 4_2:+42963908 | None:intergenic |
| GTGGTAACACACGGAACTTA+TGG | 0.428207 | 4_2:+42964822 | None:intergenic |
| ACCGGTGGTGCGAGCGGCAT+CGG | 0.434462 | 4_2:-42963988 | Msa0600890:CDS |
| TTAAAGAAATTTGTAACCAT+TGG | 0.434965 | 4_2:+42963451 | None:intergenic |
| ATTAACACGGCTAGTGTTTG+TGG | 0.440870 | 4_2:-42963610 | Msa0600890:CDS |
| GATGAGTCTAAGTATGTTAG+TGG | 0.446032 | 4_2:-42963331 | Msa0600890:CDS |
| GGGAAGGTGGCTCTGATCAC+CGG | 0.449053 | 4_2:-42964006 | Msa0600890:CDS |
| AGTTCAAAGCACGCCGTTGT+TGG | 0.452888 | 4_2:-42963553 | Msa0600890:CDS |
| AGAAACACGGCCATCGAGCT+TGG | 0.453101 | 4_2:-42963523 | Msa0600890:CDS |
| GTTCAAAGCACGCCGTTGTT+GGG | 0.459124 | 4_2:-42963552 | Msa0600890:CDS |
| GAAACACGGCCATCGAGCTT+GGG | 0.462576 | 4_2:-42963522 | Msa0600890:CDS |
| AACACAACCGTTTCCAAGTA+CGG | 0.463216 | 4_2:-42963805 | Msa0600890:CDS |
| GGTTATGATCCCCGCTCGAC+GGG | 0.465924 | 4_2:-42963641 | Msa0600890:CDS |
| AACGACTTGAGCTCCTTGCT+TGG | 0.474776 | 4_2:+42963942 | None:intergenic |
| TCTCATAATGTGACAAATCA+AGG | 0.479921 | 4_2:+42963003 | None:intergenic |
| ATTTACAAGGCTTGAGGGGA+AGG | 0.480148 | 4_2:-42964022 | Msa0600890:intron |
| AATTCATTTACAAGGCTTGA+GGG | 0.492849 | 4_2:-42964027 | Msa0600890:intron |
| ACCGATGCCGCTCGCACCAC+CGG | 0.493419 | 4_2:+42963987 | None:intergenic |
| ATTATGCTACCCCGTCGAGC+GGG | 0.496710 | 4_2:+42963631 | None:intergenic |
| ATTCATTATTGGTAAATGGT+TGG | 0.497500 | 4_2:-42964890 | None:intergenic |
| ATTGGAGTCGCAAGAACATA+AGG | 0.499291 | 4_2:+42963469 | None:intergenic |
| AACAATGGCAACCGTTCCAT+TGG | 0.500328 | 4_2:-42964633 | Msa0600890:exon |
| AGTGTTTGTGGAAGCATTGG+TGG | 0.502765 | 4_2:-42963598 | Msa0600890:CDS |
| TAGTTTACCGTACTTGGAAA+CGG | 0.505519 | 4_2:+42963798 | None:intergenic |
| CGAGGAGAAATATAGCTGTA+TGG | 0.513476 | 4_2:+42964679 | None:intergenic |
| GGGTTATGATCCCCGCTCGA+CGG | 0.522021 | 4_2:-42963642 | Msa0600890:CDS |
| CAATTCACCCGAATACCAAA+TGG | 0.524070 | 4_2:+42963499 | None:intergenic |
| GTGATTAAAGTAAACTTGAC+TGG | 0.532400 | 4_2:-42963694 | Msa0600890:CDS |
| TTGGAACAAAGCATGCATCA+AGG | 0.537428 | 4_2:-42963663 | Msa0600890:CDS |
| GAATTCATTTACAAGGCTTG+AGG | 0.537823 | 4_2:-42964028 | Msa0600890:intron |
| TTATGTTCTTGCGACTCCAA+TGG | 0.545527 | 4_2:-42963467 | Msa0600890:CDS |
| CTTTAAGCTTGATGGTGGTG+GGG | 0.546290 | 4_2:-42963434 | Msa0600890:CDS |
| GCTGAAGCTGCTCTGTACTT+GGG | 0.550906 | 4_2:-42963358 | Msa0600890:CDS |
| CTTAAGGCATTAGAGACCAA+TGG | 0.551569 | 4_2:+42964617 | None:intergenic |
| GGATTCAGCGTTGGAAACAA+TGG | 0.558181 | 4_2:-42963286 | Msa0600890:CDS |
| TGGAACAAAGCATGCATCAA+GGG | 0.564084 | 4_2:-42963662 | Msa0600890:CDS |
| CTGATCACCGGTGGTGCGAG+CGG | 0.567749 | 4_2:-42963994 | Msa0600890:CDS |
| TGTCACGTCACAGCGAACAT+AGG | 0.574891 | 4_2:+42963855 | None:intergenic |
| AATTTCTTTAAGCTTGATGG+TGG | 0.575513 | 4_2:-42963439 | Msa0600890:CDS |
| TGGTCTCTAATGCCTTAAGA+AGG | 0.576031 | 4_2:-42964613 | Msa0600890:intron |
| GCAAGACTCTTCTCCAAGCA+AGG | 0.577004 | 4_2:-42963955 | Msa0600890:CDS |
| ACCAAATGGCCCAAGCTCGA+TGG | 0.578224 | 4_2:+42963513 | None:intergenic |
| CTTGGAGAAGAGTCTTGCAG+TGG | 0.582876 | 4_2:+42963960 | None:intergenic |
| TACAAGGCTTGAGGGGAAGG+TGG | 0.585321 | 4_2:-42964019 | Msa0600890:intron |
| GATATCATGTTTAACAACGC+TGG | 0.588151 | 4_2:-42963775 | Msa0600890:CDS |
| CATAATCTTGTCATAGATGG+AGG | 0.590591 | 4_2:-42963307 | Msa0600890:CDS |
| GCTAGTGTTTGTGGAAGCAT+TGG | 0.592012 | 4_2:-42963601 | Msa0600890:CDS |
| TTCAAGTTTCTGGATAGTCG+AGG | 0.593049 | 4_2:+42964661 | None:intergenic |
| TTATGCTACCCCGTCGAGCG+GGG | 0.597671 | 4_2:+42963632 | None:intergenic |
| ATAGATGGAGGATTCAGCGT+TGG | 0.602250 | 4_2:-42963295 | Msa0600890:CDS |
| TTTAACAACGCTGGCATAAG+CGG | 0.605608 | 4_2:-42963766 | Msa0600890:CDS |
| GGCATTAGAGACCAATGGAA+CGG | 0.606755 | 4_2:+42964622 | None:intergenic |
| TATCATCAATCATATAATGT+CGG | 0.609756 | 4_2:+42963192 | None:intergenic |
| TGTTCGCTGTGACGTGACAA+AGG | 0.613627 | 4_2:-42963851 | Msa0600890:CDS |
| TTTGAACTTGTGTAGGCATG+TGG | 0.618438 | 4_2:+42963568 | None:intergenic |
| ATAAGTTCCGTGTGTTACCA+CGG | 0.619742 | 4_2:-42964820 | Msa0600890:five_prime_UTR |
| GGCGTGCTTTGAACTTGTGT+AGG | 0.622128 | 4_2:+42963561 | None:intergenic |
| ACAGCGAACATAGGAAGAAG+AGG | 0.628803 | 4_2:+42963864 | None:intergenic |
| GAAACTTGAAAAGCTAACAA+TGG | 0.631961 | 4_2:-42964648 | Msa0600890:exon |
| TCGTGGACCGTGGTAACACA+CGG | 0.636500 | 4_2:+42964813 | None:intergenic |
| TGGTGCGAGCGGCATCGGTG+AGG | 0.642225 | 4_2:-42963983 | Msa0600890:CDS |
| ATTCATTTACAAGGCTTGAG+GGG | 0.651199 | 4_2:-42964026 | Msa0600890:intron |
| AAGGTGGCTCTGATCACCGG+TGG | 0.652302 | 4_2:-42964003 | Msa0600890:CDS |
| GTTTCTCATCAGCCCAACAA+CGG | 0.652719 | 4_2:+42963540 | None:intergenic |
| GCTGACATCCAAGACGACAA+AGG | 0.668183 | 4_2:-42963916 | Msa0600890:CDS |
| GTAGTTGCCTTCGTGGACCG+TGG | 0.672954 | 4_2:+42964803 | None:intergenic |
| GTTATGATCCCCGCTCGACG+GGG | 0.674081 | 4_2:-42963640 | Msa0600890:CDS |
| AATTATGCTACCCCGTCGAG+CGG | 0.674229 | 4_2:+42963630 | None:intergenic |
| TGTTGGGCTGATGAGAAACA+CGG | 0.693612 | 4_2:-42963536 | Msa0600890:CDS |
| TGTGTTACCACGGTCCACGA+AGG | 0.703120 | 4_2:-42964810 | Msa0600890:five_prime_UTR |
| ACGGGGTAGCATAATTAACA+CGG | 0.731747 | 4_2:-42963623 | Msa0600890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAAAAATTAAAACATG+TGG | - | chr4_2:42962987-42963006 | Msa0600890:three_prime_UTR | 10.0% |
| !!! | ATTTATTTTCTGTATATTAA+TGG | - | chr4_2:42963273-42963292 | Msa0600890:CDS | 10.0% |
| !!! | TATTTTTTTTATAACCTATA+AGG | + | chr4_2:42963475-42963494 | None:intergenic | 10.0% |
| !!! | TTTTTATTTTTTATTTCCAT+AGG | - | chr4_2:42964734-42964753 | Msa0600890:five_prime_UTR | 10.0% |
| !!! | TTTTTAAAAATTAAAACATG+TGG | - | chr4_2:42962987-42963006 | Msa0600890:three_prime_UTR | 10.0% |
| !!! | ATTTATTTTCTGTATATTAA+TGG | - | chr4_2:42963273-42963292 | Msa0600890:CDS | 10.0% |
| !!! | TATTTTTTTTATAACCTATA+AGG | + | chr4_2:42963475-42963494 | None:intergenic | 10.0% |
| !!! | TTTTTATTTTTTATTTCCAT+AGG | - | chr4_2:42964734-42964753 | Msa0600890:five_prime_UTR | 10.0% |
| !! | TACAGAAAATAAATGAAATA+AGG | + | chr4_2:42963267-42963286 | None:intergenic | 15.0% |
| !! | GATTTATGAAAAAATATAAG+TGG | - | chr4_2:42963369-42963388 | Msa0600890:CDS | 15.0% |
| !!! | TTATTTTACTTAAATTTGTG+TGG | + | chr4_2:42963418-42963437 | None:intergenic | 15.0% |
| !!! | ATTTTATATAATAAGCACAA+TGG | - | chr4_2:42963726-42963745 | Msa0600890:CDS | 15.0% |
| !!! | TTTTATATAATAAGCACAAT+GGG | - | chr4_2:42963727-42963746 | Msa0600890:CDS | 15.0% |
| !! | TACAGAAAATAAATGAAATA+AGG | + | chr4_2:42963267-42963286 | None:intergenic | 15.0% |
| !! | GATTTATGAAAAAATATAAG+TGG | - | chr4_2:42963369-42963388 | Msa0600890:CDS | 15.0% |
| !!! | TTATTTTACTTAAATTTGTG+TGG | + | chr4_2:42963418-42963437 | None:intergenic | 15.0% |
| !!! | ATTTTATATAATAAGCACAA+TGG | - | chr4_2:42963726-42963745 | Msa0600890:CDS | 15.0% |
| !!! | TTTTATATAATAAGCACAAT+GGG | - | chr4_2:42963727-42963746 | Msa0600890:CDS | 15.0% |
| !!! | TCATTTTTTCAATAGTACTA+AGG | + | chr4_2:42963074-42963093 | None:intergenic | 20.0% |
| !! | TTGAAAAAATGATTAAAGCT+TGG | - | chr4_2:42963082-42963101 | Msa0600890:three_prime_UTR | 20.0% |
| !! | TGAAAAAATGATTAAAGCTT+GGG | - | chr4_2:42963083-42963102 | Msa0600890:three_prime_UTR | 20.0% |
| !! | CATAAATCGTATATTTATGT+AGG | + | chr4_2:42963357-42963376 | None:intergenic | 20.0% |
| !!! | GATAGATGACTTTTTAAAAA+GGG | + | chr4_2:42963576-42963595 | None:intergenic | 20.0% |
| !!! | TGATAGATGACTTTTTAAAA+AGG | + | chr4_2:42963577-42963596 | None:intergenic | 20.0% |
| !! | AACTTCATTACAATTCTATA+AGG | + | chr4_2:42963759-42963778 | None:intergenic | 20.0% |
| !! | TTTAATCACATCTTCAAATT+CGG | + | chr4_2:42964128-42964147 | None:intergenic | 20.0% |
| !! | TTAAAGAAATTTGTAACCAT+TGG | + | chr4_2:42964385-42964404 | None:intergenic | 20.0% |
| !! | TATCATCAATCATATAATGT+CGG | + | chr4_2:42964644-42964663 | None:intergenic | 20.0% |
| !!! | ATTGATGATAAAGTAATTGT+TGG | - | chr4_2:42964654-42964673 | Msa0600890:five_prime_UTR | 20.0% |
| !!! | TCATTTTTTCAATAGTACTA+AGG | + | chr4_2:42963074-42963093 | None:intergenic | 20.0% |
| !! | TTGAAAAAATGATTAAAGCT+TGG | - | chr4_2:42963082-42963101 | Msa0600890:three_prime_UTR | 20.0% |
| !! | TGAAAAAATGATTAAAGCTT+GGG | - | chr4_2:42963083-42963102 | Msa0600890:three_prime_UTR | 20.0% |
| !! | CATAAATCGTATATTTATGT+AGG | + | chr4_2:42963357-42963376 | None:intergenic | 20.0% |
| !!! | GATAGATGACTTTTTAAAAA+GGG | + | chr4_2:42963576-42963595 | None:intergenic | 20.0% |
| !!! | TGATAGATGACTTTTTAAAA+AGG | + | chr4_2:42963577-42963596 | None:intergenic | 20.0% |
| !! | AACTTCATTACAATTCTATA+AGG | + | chr4_2:42963759-42963778 | None:intergenic | 20.0% |
| !! | TTTAATCACATCTTCAAATT+CGG | + | chr4_2:42964128-42964147 | None:intergenic | 20.0% |
| !! | TTAAAGAAATTTGTAACCAT+TGG | + | chr4_2:42964385-42964404 | None:intergenic | 20.0% |
| !! | TATCATCAATCATATAATGT+CGG | + | chr4_2:42964644-42964663 | None:intergenic | 20.0% |
| !!! | ATTGATGATAAAGTAATTGT+TGG | - | chr4_2:42964654-42964673 | Msa0600890:five_prime_UTR | 20.0% |
| !!! | TTTTTCAATAGTACTAAGGT+TGG | + | chr4_2:42963070-42963089 | None:intergenic | 25.0% |
| ! | GAAAAAATGATTAAAGCTTG+GGG | - | chr4_2:42963084-42963103 | Msa0600890:three_prime_UTR | 25.0% |
| !! | AACTTGTTTATACCTTCTTA+AGG | + | chr4_2:42963235-42963254 | None:intergenic | 25.0% |
| !! | CGTATATTTATGTAGGATTT+TGG | + | chr4_2:42963350-42963369 | None:intergenic | 25.0% |
| ! | AAATATAAGTGGACATTTGA+AGG | - | chr4_2:42963380-42963399 | Msa0600890:CDS | 25.0% |
| !!! | CTAATATGTTATAGCCTTAT+AGG | - | chr4_2:42963458-42963477 | Msa0600890:CDS | 25.0% |
| ! | TTGAAAAATGAGAATCTGAA+AGG | + | chr4_2:42963658-42963677 | None:intergenic | 25.0% |
| ! | ACAAATTTCTTTAAGCTTGA+TGG | - | chr4_2:42964391-42964410 | Msa0600890:intron | 25.0% |
| ! | GATGTTTATTCTAACCTAAA+AGG | - | chr4_2:42964427-42964446 | Msa0600890:intron | 25.0% |
| !! | TAATTTTATGCCAAAAGATG+TGG | - | chr4_2:42964453-42964472 | Msa0600890:intron | 25.0% |
| !!! | TTTTTCAATAGTACTAAGGT+TGG | + | chr4_2:42963070-42963089 | None:intergenic | 25.0% |
| ! | GAAAAAATGATTAAAGCTTG+GGG | - | chr4_2:42963084-42963103 | Msa0600890:three_prime_UTR | 25.0% |
| !! | AACTTGTTTATACCTTCTTA+AGG | + | chr4_2:42963235-42963254 | None:intergenic | 25.0% |
| !! | CGTATATTTATGTAGGATTT+TGG | + | chr4_2:42963350-42963369 | None:intergenic | 25.0% |
| ! | AAATATAAGTGGACATTTGA+AGG | - | chr4_2:42963380-42963399 | Msa0600890:CDS | 25.0% |
| !!! | CTAATATGTTATAGCCTTAT+AGG | - | chr4_2:42963458-42963477 | Msa0600890:CDS | 25.0% |
| ! | TTGAAAAATGAGAATCTGAA+AGG | + | chr4_2:42963658-42963677 | None:intergenic | 25.0% |
| ! | ACAAATTTCTTTAAGCTTGA+TGG | - | chr4_2:42964391-42964410 | Msa0600890:intron | 25.0% |
| ! | GATGTTTATTCTAACCTAAA+AGG | - | chr4_2:42964427-42964446 | Msa0600890:intron | 25.0% |
| !! | TAATTTTATGCCAAAAGATG+TGG | - | chr4_2:42964453-42964472 | Msa0600890:intron | 25.0% |
| !!! | TTGTTAGCTTTTCAAGTTTC+TGG | + | chr4_2:42963185-42963204 | None:intergenic | 30.0% |
| GAAACTTGAAAAGCTAACAA+TGG | - | chr4_2:42963185-42963204 | Msa0600890:three_prime_UTR | 30.0% | |
| !! | TAGGATTTTGGAGATAATCA+CGG | + | chr4_2:42963338-42963357 | None:intergenic | 30.0% |
| AATGAATTCAGCATGACAAA+TGG | + | chr4_2:42963794-42963813 | None:intergenic | 30.0% | |
| TCATGCTGAATTCATTTACA+AGG | - | chr4_2:42963798-42963817 | Msa0600890:CDS | 30.0% | |
| AATTCATTTACAAGGCTTGA+GGG | - | chr4_2:42963806-42963825 | Msa0600890:CDS | 30.0% | |
| GTGATTAAAGTAAACTTGAC+TGG | - | chr4_2:42964139-42964158 | Msa0600890:intron | 30.0% | |
| AATTTCTTTAAGCTTGATGG+TGG | - | chr4_2:42964394-42964413 | Msa0600890:intron | 30.0% | |
| ! | GCATAAAATTAGCACCTTTT+AGG | + | chr4_2:42964444-42964463 | None:intergenic | 30.0% |
| CCTCGAATAAAAATAACCTA+TGG | + | chr4_2:42964753-42964772 | None:intergenic | 30.0% | |
| !!! | CCATAGGTTATTTTTATTCG+AGG | - | chr4_2:42964750-42964769 | Msa0600890:five_prime_UTR | 30.0% |
| TCTCATAATGTGACAAATCA+AGG | + | chr4_2:42964833-42964852 | None:intergenic | 30.0% | |
| !!! | TTGTTAGCTTTTCAAGTTTC+TGG | + | chr4_2:42963185-42963204 | None:intergenic | 30.0% |
| GAAACTTGAAAAGCTAACAA+TGG | - | chr4_2:42963185-42963204 | Msa0600890:three_prime_UTR | 30.0% | |
| !! | TAGGATTTTGGAGATAATCA+CGG | + | chr4_2:42963338-42963357 | None:intergenic | 30.0% |
| AATGAATTCAGCATGACAAA+TGG | + | chr4_2:42963794-42963813 | None:intergenic | 30.0% | |
| TCATGCTGAATTCATTTACA+AGG | - | chr4_2:42963798-42963817 | Msa0600890:CDS | 30.0% | |
| AATTCATTTACAAGGCTTGA+GGG | - | chr4_2:42963806-42963825 | Msa0600890:CDS | 30.0% | |
| GTGATTAAAGTAAACTTGAC+TGG | - | chr4_2:42964139-42964158 | Msa0600890:intron | 30.0% | |
| AATTTCTTTAAGCTTGATGG+TGG | - | chr4_2:42964394-42964413 | Msa0600890:intron | 30.0% | |
| ! | GCATAAAATTAGCACCTTTT+AGG | + | chr4_2:42964444-42964463 | None:intergenic | 30.0% |
| CCTCGAATAAAAATAACCTA+TGG | + | chr4_2:42964753-42964772 | None:intergenic | 30.0% | |
| !!! | CCATAGGTTATTTTTATTCG+AGG | - | chr4_2:42964750-42964769 | Msa0600890:five_prime_UTR | 30.0% |
| TCTCATAATGTGACAAATCA+AGG | + | chr4_2:42964833-42964852 | None:intergenic | 30.0% | |
| !! | AAGCTTGGGGCTTTATTTAA+TGG | - | chr4_2:42963097-42963116 | Msa0600890:three_prime_UTR | 35.0% |
| AGATAATCACGGACTTAAGT+TGG | + | chr4_2:42963327-42963346 | None:intergenic | 35.0% | |
| GAATTCATTTACAAGGCTTG+AGG | - | chr4_2:42963805-42963824 | Msa0600890:CDS | 35.0% | |
| ATTCATTTACAAGGCTTGAG+GGG | - | chr4_2:42963807-42963826 | Msa0600890:CDS | 35.0% | |
| TAGTTTACCGTACTTGGAAA+CGG | + | chr4_2:42964038-42964057 | None:intergenic | 35.0% | |
| ! | GATATCTAGTTTACCGTACT+TGG | + | chr4_2:42964044-42964063 | None:intergenic | 35.0% |
| GATATCATGTTTAACAACGC+TGG | - | chr4_2:42964058-42964077 | Msa0600890:intron | 35.0% | |
| GATGAGTCTAAGTATGTTAG+TGG | - | chr4_2:42964502-42964521 | Msa0600890:intron | 35.0% | |
| GGTCATAATCTTGTCATAGA+TGG | - | chr4_2:42964523-42964542 | Msa0600890:intron | 35.0% | |
| CATAATCTTGTCATAGATGG+AGG | - | chr4_2:42964526-42964545 | Msa0600890:intron | 35.0% | |
| CATGTCTTCTATAATTCGTG+CGG | - | chr4_2:42964882-42964901 | Msa0600890:five_prime_UTR | 35.0% | |
| !! | AAGCTTGGGGCTTTATTTAA+TGG | - | chr4_2:42963097-42963116 | Msa0600890:three_prime_UTR | 35.0% |
| AGATAATCACGGACTTAAGT+TGG | + | chr4_2:42963327-42963346 | None:intergenic | 35.0% | |
| GAATTCATTTACAAGGCTTG+AGG | - | chr4_2:42963805-42963824 | Msa0600890:CDS | 35.0% | |
| ATTCATTTACAAGGCTTGAG+GGG | - | chr4_2:42963807-42963826 | Msa0600890:CDS | 35.0% | |
| TAGTTTACCGTACTTGGAAA+CGG | + | chr4_2:42964038-42964057 | None:intergenic | 35.0% | |
| ! | GATATCTAGTTTACCGTACT+TGG | + | chr4_2:42964044-42964063 | None:intergenic | 35.0% |
| GATATCATGTTTAACAACGC+TGG | - | chr4_2:42964058-42964077 | Msa0600890:intron | 35.0% | |
| GATGAGTCTAAGTATGTTAG+TGG | - | chr4_2:42964502-42964521 | Msa0600890:intron | 35.0% | |
| GGTCATAATCTTGTCATAGA+TGG | - | chr4_2:42964523-42964542 | Msa0600890:intron | 35.0% | |
| CATAATCTTGTCATAGATGG+AGG | - | chr4_2:42964526-42964545 | Msa0600890:intron | 35.0% | |
| ATAAGTTCCGTGTGTTACCA+CGG | - | chr4_2:42963013-42963032 | Msa0600890:three_prime_UTR | 40.0% | |
| CTAATATGTAGTTGCCTTCG+TGG | + | chr4_2:42963040-42963059 | None:intergenic | 40.0% | |
| CGAGGAGAAATATAGCTGTA+TGG | + | chr4_2:42963157-42963176 | None:intergenic | 40.0% | |
| ! | TTCAAGTTTCTGGATAGTCG+AGG | + | chr4_2:42963175-42963194 | None:intergenic | 40.0% |
| ! | CTTAAGGCATTAGAGACCAA+TGG | + | chr4_2:42963219-42963238 | None:intergenic | 40.0% |
| TGGTCTCTAATGCCTTAAGA+AGG | - | chr4_2:42963220-42963239 | Msa0600890:three_prime_UTR | 40.0% | |
| AACACAACCGTTTCCAAGTA+CGG | - | chr4_2:42964028-42964047 | Msa0600890:intron | 40.0% | |
| TTTAACAACGCTGGCATAAG+CGG | - | chr4_2:42964067-42964086 | Msa0600890:intron | 40.0% | |
| TTGGAACAAAGCATGCATCA+AGG | - | chr4_2:42964170-42964189 | Msa0600890:intron | 40.0% | |
| TGGAACAAAGCATGCATCAA+GGG | - | chr4_2:42964171-42964190 | Msa0600890:intron | 40.0% | |
| ACGGGGTAGCATAATTAACA+CGG | - | chr4_2:42964210-42964229 | Msa0600890:intron | 40.0% | |
| ATTAACACGGCTAGTGTTTG+TGG | - | chr4_2:42964223-42964242 | Msa0600890:intron | 40.0% | |
| TTTGAACTTGTGTAGGCATG+TGG | + | chr4_2:42964268-42964287 | None:intergenic | 40.0% | |
| CAATTCACCCGAATACCAAA+TGG | + | chr4_2:42964337-42964356 | None:intergenic | 40.0% | |
| ATTGGAGTCGCAAGAACATA+AGG | + | chr4_2:42964367-42964386 | None:intergenic | 40.0% | |
| TTATGTTCTTGCGACTCCAA+TGG | - | chr4_2:42964366-42964385 | Msa0600890:intron | 40.0% | |
| !! | TTCTTTAAGCTTGATGGTGG+TGG | - | chr4_2:42964397-42964416 | Msa0600890:intron | 40.0% |
| !! | TCTTTAAGCTTGATGGTGGT+GGG | - | chr4_2:42964398-42964417 | Msa0600890:intron | 40.0% |
| ATAAGTTCCGTGTGTTACCA+CGG | - | chr4_2:42963013-42963032 | Msa0600890:three_prime_UTR | 40.0% | |
| CTAATATGTAGTTGCCTTCG+TGG | + | chr4_2:42963040-42963059 | None:intergenic | 40.0% | |
| CGAGGAGAAATATAGCTGTA+TGG | + | chr4_2:42963157-42963176 | None:intergenic | 40.0% | |
| ! | TTCAAGTTTCTGGATAGTCG+AGG | + | chr4_2:42963175-42963194 | None:intergenic | 40.0% |
| ! | CTTAAGGCATTAGAGACCAA+TGG | + | chr4_2:42963219-42963238 | None:intergenic | 40.0% |
| TGGTCTCTAATGCCTTAAGA+AGG | - | chr4_2:42963220-42963239 | Msa0600890:three_prime_UTR | 40.0% | |
| AACACAACCGTTTCCAAGTA+CGG | - | chr4_2:42964028-42964047 | Msa0600890:intron | 40.0% | |
| TTTAACAACGCTGGCATAAG+CGG | - | chr4_2:42964067-42964086 | Msa0600890:intron | 40.0% | |
| TTGGAACAAAGCATGCATCA+AGG | - | chr4_2:42964170-42964189 | Msa0600890:intron | 40.0% | |
| TGGAACAAAGCATGCATCAA+GGG | - | chr4_2:42964171-42964190 | Msa0600890:intron | 40.0% | |
| ACGGGGTAGCATAATTAACA+CGG | - | chr4_2:42964210-42964229 | Msa0600890:intron | 40.0% | |
| ATTAACACGGCTAGTGTTTG+TGG | - | chr4_2:42964223-42964242 | Msa0600890:intron | 40.0% | |
| TTTGAACTTGTGTAGGCATG+TGG | + | chr4_2:42964268-42964287 | None:intergenic | 40.0% | |
| CAATTCACCCGAATACCAAA+TGG | + | chr4_2:42964337-42964356 | None:intergenic | 40.0% | |
| ATTGGAGTCGCAAGAACATA+AGG | + | chr4_2:42964367-42964386 | None:intergenic | 40.0% | |
| TTATGTTCTTGCGACTCCAA+TGG | - | chr4_2:42964366-42964385 | Msa0600890:intron | 40.0% | |
| !! | TTCTTTAAGCTTGATGGTGG+TGG | - | chr4_2:42964397-42964416 | Msa0600890:intron | 40.0% |
| !! | TCTTTAAGCTTGATGGTGGT+GGG | - | chr4_2:42964398-42964417 | Msa0600890:intron | 40.0% |
| GTGGTAACACACGGAACTTA+TGG | + | chr4_2:42963014-42963033 | None:intergenic | 45.0% | |
| AACAATGGCAACCGTTCCAT+TGG | - | chr4_2:42963200-42963219 | Msa0600890:three_prime_UTR | 45.0% | |
| GGCATTAGAGACCAATGGAA+CGG | + | chr4_2:42963214-42963233 | None:intergenic | 45.0% | |
| ATTTACAAGGCTTGAGGGGA+AGG | - | chr4_2:42963811-42963830 | Msa0600890:CDS | 45.0% | |
| ! | TAGAGTGTCCTTTGTCGTCT+TGG | + | chr4_2:42963928-42963947 | None:intergenic | 45.0% |
| ACAGCGAACATAGGAAGAAG+AGG | + | chr4_2:42963972-42963991 | None:intergenic | 45.0% | |
| CTTGGAAACGGTTGTGTTCA+CGG | + | chr4_2:42964026-42964045 | None:intergenic | 45.0% | |
| AACTTGACTGGCGTCTTTCT+TGG | - | chr4_2:42964151-42964170 | Msa0600890:intron | 45.0% | |
| ! | GCTAGTGTTTGTGGAAGCAT+TGG | - | chr4_2:42964232-42964251 | Msa0600890:intron | 45.0% |
| !! | AGTGTTTGTGGAAGCATTGG+TGG | - | chr4_2:42964235-42964254 | Msa0600890:intron | 45.0% |
| GTTTCTCATCAGCCCAACAA+CGG | + | chr4_2:42964296-42964315 | None:intergenic | 45.0% | |
| TGTTGGGCTGATGAGAAACA+CGG | - | chr4_2:42964297-42964316 | Msa0600890:intron | 45.0% | |
| AGCTTGGGCCATTTGGTATT+CGG | - | chr4_2:42964326-42964345 | Msa0600890:intron | 45.0% | |
| !! | CTTTAAGCTTGATGGTGGTG+GGG | - | chr4_2:42964399-42964418 | Msa0600890:intron | 45.0% |
| ATAGATGGAGGATTCAGCGT+TGG | - | chr4_2:42964538-42964557 | Msa0600890:intron | 45.0% | |
| ! | GGATTCAGCGTTGGAAACAA+TGG | - | chr4_2:42964547-42964566 | Msa0600890:intron | 45.0% |
| GTGGTAACACACGGAACTTA+TGG | + | chr4_2:42963014-42963033 | None:intergenic | 45.0% | |
| AACAATGGCAACCGTTCCAT+TGG | - | chr4_2:42963200-42963219 | Msa0600890:three_prime_UTR | 45.0% | |
| GGCATTAGAGACCAATGGAA+CGG | + | chr4_2:42963214-42963233 | None:intergenic | 45.0% | |
| ATTTACAAGGCTTGAGGGGA+AGG | - | chr4_2:42963811-42963830 | Msa0600890:CDS | 45.0% | |
| ! | TAGAGTGTCCTTTGTCGTCT+TGG | + | chr4_2:42963928-42963947 | None:intergenic | 45.0% |
| ACAGCGAACATAGGAAGAAG+AGG | + | chr4_2:42963972-42963991 | None:intergenic | 45.0% | |
| CTTGGAAACGGTTGTGTTCA+CGG | + | chr4_2:42964026-42964045 | None:intergenic | 45.0% | |
| AACTTGACTGGCGTCTTTCT+TGG | - | chr4_2:42964151-42964170 | Msa0600890:intron | 45.0% | |
| ! | GCTAGTGTTTGTGGAAGCAT+TGG | - | chr4_2:42964232-42964251 | Msa0600890:intron | 45.0% |
| !! | AGTGTTTGTGGAAGCATTGG+TGG | - | chr4_2:42964235-42964254 | Msa0600890:intron | 45.0% |
| GTTTCTCATCAGCCCAACAA+CGG | + | chr4_2:42964296-42964315 | None:intergenic | 45.0% | |
| TGTTGGGCTGATGAGAAACA+CGG | - | chr4_2:42964297-42964316 | Msa0600890:intron | 45.0% | |
| AGCTTGGGCCATTTGGTATT+CGG | - | chr4_2:42964326-42964345 | Msa0600890:intron | 45.0% | |
| !! | CTTTAAGCTTGATGGTGGTG+GGG | - | chr4_2:42964399-42964418 | Msa0600890:intron | 45.0% |
| ATAGATGGAGGATTCAGCGT+TGG | - | chr4_2:42964538-42964557 | Msa0600890:intron | 45.0% | |
| ! | GGATTCAGCGTTGGAAACAA+TGG | - | chr4_2:42964547-42964566 | Msa0600890:intron | 45.0% |
| CTTGGAGAAGAGTCTTGCAG+TGG | + | chr4_2:42963876-42963895 | None:intergenic | 50.0% | |
| GCAAGACTCTTCTCCAAGCA+AGG | - | chr4_2:42963878-42963897 | Msa0600890:CDS | 50.0% | |
| AACGACTTGAGCTCCTTGCT+TGG | + | chr4_2:42963894-42963913 | None:intergenic | 50.0% | |
| GCTGACATCCAAGACGACAA+AGG | - | chr4_2:42963917-42963936 | Msa0600890:CDS | 50.0% | |
| TGTCACGTCACAGCGAACAT+AGG | + | chr4_2:42963981-42964000 | None:intergenic | 50.0% | |
| TGTTCGCTGTGACGTGACAA+AGG | - | chr4_2:42963982-42964001 | Msa0600890:CDS | 50.0% | |
| AATTATGCTACCCCGTCGAG+CGG | + | chr4_2:42964206-42964225 | None:intergenic | 50.0% | |
| ! | GGCGTGCTTTGAACTTGTGT+AGG | + | chr4_2:42964275-42964294 | None:intergenic | 50.0% |
| AGTTCAAAGCACGCCGTTGT+TGG | - | chr4_2:42964280-42964299 | Msa0600890:intron | 50.0% | |
| GTTCAAAGCACGCCGTTGTT+GGG | - | chr4_2:42964281-42964300 | Msa0600890:intron | 50.0% | |
| GCTTGGGCCATTTGGTATTC+GGG | - | chr4_2:42964327-42964346 | Msa0600890:intron | 50.0% | |
| ! | GCAGCTTCAGCCACATCTTT+TGG | + | chr4_2:42964466-42964485 | None:intergenic | 50.0% |
| GCTGAAGCTGCTCTGTACTT+GGG | - | chr4_2:42964475-42964494 | Msa0600890:intron | 50.0% | |
| CTTGGAGAAGAGTCTTGCAG+TGG | + | chr4_2:42963876-42963895 | None:intergenic | 50.0% | |
| GCAAGACTCTTCTCCAAGCA+AGG | - | chr4_2:42963878-42963897 | Msa0600890:CDS | 50.0% | |
| AACGACTTGAGCTCCTTGCT+TGG | + | chr4_2:42963894-42963913 | None:intergenic | 50.0% | |
| GCTGACATCCAAGACGACAA+AGG | - | chr4_2:42963917-42963936 | Msa0600890:CDS | 50.0% | |
| TGTCACGTCACAGCGAACAT+AGG | + | chr4_2:42963981-42964000 | None:intergenic | 50.0% | |
| TGTTCGCTGTGACGTGACAA+AGG | - | chr4_2:42963982-42964001 | Msa0600890:CDS | 50.0% | |
| AATTATGCTACCCCGTCGAG+CGG | + | chr4_2:42964206-42964225 | None:intergenic | 50.0% | |
| ! | GGCGTGCTTTGAACTTGTGT+AGG | + | chr4_2:42964275-42964294 | None:intergenic | 50.0% |
| AGTTCAAAGCACGCCGTTGT+TGG | - | chr4_2:42964280-42964299 | Msa0600890:intron | 50.0% | |
| GTTCAAAGCACGCCGTTGTT+GGG | - | chr4_2:42964281-42964300 | Msa0600890:intron | 50.0% | |
| GCTTGGGCCATTTGGTATTC+GGG | - | chr4_2:42964327-42964346 | Msa0600890:intron | 50.0% | |
| ! | GCAGCTTCAGCCACATCTTT+TGG | + | chr4_2:42964466-42964485 | None:intergenic | 50.0% |
| GCTGAAGCTGCTCTGTACTT+GGG | - | chr4_2:42964475-42964494 | Msa0600890:intron | 50.0% | |
| TCGTGGACCGTGGTAACACA+CGG | + | chr4_2:42963023-42963042 | None:intergenic | 55.0% | |
| TGTGTTACCACGGTCCACGA+AGG | - | chr4_2:42963023-42963042 | Msa0600890:three_prime_UTR | 55.0% | |
| TACAAGGCTTGAGGGGAAGG+TGG | - | chr4_2:42963814-42963833 | Msa0600890:CDS | 55.0% | |
| ATTATGCTACCCCGTCGAGC+GGG | + | chr4_2:42964205-42964224 | None:intergenic | 55.0% | |
| AGAAACACGGCCATCGAGCT+TGG | - | chr4_2:42964310-42964329 | Msa0600890:intron | 55.0% | |
| GAAACACGGCCATCGAGCTT+GGG | - | chr4_2:42964311-42964330 | Msa0600890:intron | 55.0% | |
| ACCAAATGGCCCAAGCTCGA+TGG | + | chr4_2:42964323-42964342 | None:intergenic | 55.0% | |
| GGCTGAAGCTGCTCTGTACT+TGG | - | chr4_2:42964474-42964493 | Msa0600890:intron | 55.0% | |
| TCGTGGACCGTGGTAACACA+CGG | + | chr4_2:42963023-42963042 | None:intergenic | 55.0% | |
| TGTGTTACCACGGTCCACGA+AGG | - | chr4_2:42963023-42963042 | Msa0600890:three_prime_UTR | 55.0% | |
| TACAAGGCTTGAGGGGAAGG+TGG | - | chr4_2:42963814-42963833 | Msa0600890:CDS | 55.0% | |
| ATTATGCTACCCCGTCGAGC+GGG | + | chr4_2:42964205-42964224 | None:intergenic | 55.0% | |
| AGAAACACGGCCATCGAGCT+TGG | - | chr4_2:42964310-42964329 | Msa0600890:intron | 55.0% | |
| GAAACACGGCCATCGAGCTT+GGG | - | chr4_2:42964311-42964330 | Msa0600890:intron | 55.0% | |
| ACCAAATGGCCCAAGCTCGA+TGG | + | chr4_2:42964323-42964342 | None:intergenic | 55.0% | |
| GGCTGAAGCTGCTCTGTACT+TGG | - | chr4_2:42964474-42964493 | Msa0600890:intron | 55.0% | |
| GTAGTTGCCTTCGTGGACCG+TGG | + | chr4_2:42963033-42963052 | None:intergenic | 60.0% | |
| !! | GGGAAGGTGGCTCTGATCAC+CGG | - | chr4_2:42963827-42963846 | Msa0600890:CDS | 60.0% |
| !! | AAGGTGGCTCTGATCACCGG+TGG | - | chr4_2:42963830-42963849 | Msa0600890:CDS | 60.0% |
| GGGTTATGATCCCCGCTCGA+CGG | - | chr4_2:42964191-42964210 | Msa0600890:intron | 60.0% | |
| GGTTATGATCCCCGCTCGAC+GGG | - | chr4_2:42964192-42964211 | Msa0600890:intron | 60.0% | |
| GTTATGATCCCCGCTCGACG+GGG | - | chr4_2:42964193-42964212 | Msa0600890:intron | 60.0% | |
| TTATGCTACCCCGTCGAGCG+GGG | + | chr4_2:42964204-42964223 | None:intergenic | 60.0% | |
| GCCATCGAGCTTGGGCCATT+TGG | - | chr4_2:42964319-42964338 | Msa0600890:intron | 60.0% | |
| GTAGTTGCCTTCGTGGACCG+TGG | + | chr4_2:42963033-42963052 | None:intergenic | 60.0% | |
| !! | GGGAAGGTGGCTCTGATCAC+CGG | - | chr4_2:42963827-42963846 | Msa0600890:CDS | 60.0% |
| !! | AAGGTGGCTCTGATCACCGG+TGG | - | chr4_2:42963830-42963849 | Msa0600890:CDS | 60.0% |
| GGGTTATGATCCCCGCTCGA+CGG | - | chr4_2:42964191-42964210 | Msa0600890:intron | 60.0% | |
| GGTTATGATCCCCGCTCGAC+GGG | - | chr4_2:42964192-42964211 | Msa0600890:intron | 60.0% | |
| GTTATGATCCCCGCTCGACG+GGG | - | chr4_2:42964193-42964212 | Msa0600890:intron | 60.0% | |
| TTATGCTACCCCGTCGAGCG+GGG | + | chr4_2:42964204-42964223 | None:intergenic | 60.0% | |
| GCCATCGAGCTTGGGCCATT+TGG | - | chr4_2:42964319-42964338 | Msa0600890:intron | 60.0% | |
| CTGATCACCGGTGGTGCGAG+CGG | - | chr4_2:42963839-42963858 | Msa0600890:CDS | 65.0% | |
| CTGATCACCGGTGGTGCGAG+CGG | - | chr4_2:42963839-42963858 | Msa0600890:CDS | 65.0% | |
| ACCGGTGGTGCGAGCGGCAT+CGG | - | chr4_2:42963845-42963864 | Msa0600890:CDS | 70.0% | |
| ACCGATGCCGCTCGCACCAC+CGG | + | chr4_2:42963849-42963868 | None:intergenic | 70.0% | |
| !! | TGGTGCGAGCGGCATCGGTG+AGG | - | chr4_2:42963850-42963869 | Msa0600890:CDS | 70.0% |
| ACCGGTGGTGCGAGCGGCAT+CGG | - | chr4_2:42963845-42963864 | Msa0600890:CDS | 70.0% | |
| ACCGATGCCGCTCGCACCAC+CGG | + | chr4_2:42963849-42963868 | None:intergenic | 70.0% | |
| !! | TGGTGCGAGCGGCATCGGTG+AGG | - | chr4_2:42963850-42963869 | Msa0600890:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 42962953 | 42964902 | 42962953 | ID=Msa0600890;Name=Msa0600890 |
| chr4_2 | mRNA | 42962953 | 42964902 | 42962953 | ID=Msa0600890-mRNA-1;Parent=Msa0600890;Name=Msa0600890-mRNA-1;_AED=0.25;_eAED=0.25;_QI=251|1|1|1|1|1|2|305|271 |
| chr4_2 | exon | 42962953 | 42964035 | 42962953 | ID=Msa0600890-mRNA-1:exon:9379;Parent=Msa0600890-mRNA-1 |
| chr4_2 | exon | 42964614 | 42964902 | 42964614 | ID=Msa0600890-mRNA-1:exon:9378;Parent=Msa0600890-mRNA-1 |
| chr4_2 | five_prime_UTR | 42964652 | 42964902 | 42964652 | ID=Msa0600890-mRNA-1:five_prime_utr;Parent=Msa0600890-mRNA-1 |
| chr4_2 | CDS | 42964614 | 42964651 | 42964614 | ID=Msa0600890-mRNA-1:cds;Parent=Msa0600890-mRNA-1 |
| chr4_2 | CDS | 42963258 | 42964035 | 42963258 | ID=Msa0600890-mRNA-1:cds;Parent=Msa0600890-mRNA-1 |
| chr4_2 | three_prime_UTR | 42962953 | 42963257 | 42962953 | ID=Msa0600890-mRNA-1:three_prime_utr;Parent=Msa0600890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
