Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966650 | XP_003604338.1 | 85.475 | 179 | 25 | 1 | 115 | 292 | 1112 | 1290 | 8.00e-91 | 304 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966650 | sp|F4I171|MD15A_ARATH | 59.412 | 170 | 60 | 3 | 126 | 292 | 1171 | 1334 | 3.49e-53 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0797990 | Msa0966650 | 0.800571 | 1.353827e-48 | -8.615850e-47 |
| Msa0279480 | Msa0966650 | 0.917469 | 5.111951e-86 | -8.615850e-47 |
| Msa0537300 | Msa0966650 | 0.867500 | 1.307299e-65 | -8.615850e-47 |
| Msa0966650 | Msa1068790 | 0.896170 | 4.767403e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966650 | MtrunA17_Chr4g0002981 | 85.475 | 179 | 25 | 1 | 115 | 292 | 1112 | 1290 | 7.36e-95 | 304 |
| Msa0966650 | MtrunA17_Chr2g0333451 | 68.571 | 175 | 48 | 2 | 115 | 288 | 1117 | 1285 | 4.86e-62 | 212 |
| Msa0966650 | MtrunA17_Chr4g0049851 | 92.405 | 79 | 5 | 1 | 48 | 126 | 143 | 220 | 4.52e-46 | 160 |
| Msa0966650 | MtrunA17_Chr4g0049861 | 82.278 | 79 | 13 | 1 | 48 | 126 | 141 | 218 | 3.04e-39 | 142 |
| Msa0966650 | MtrunA17_Chr8g0354961 | 41.401 | 157 | 90 | 2 | 128 | 283 | 35 | 190 | 1.86e-30 | 113 |
| Msa0966650 | MtrunA17_Chr8g0354921 | 38.065 | 155 | 95 | 1 | 125 | 278 | 178 | 332 | 3.39e-27 | 108 |
| Msa0966650 | MtrunA17_Chr4g0052781 | 31.081 | 148 | 91 | 3 | 125 | 270 | 351 | 489 | 2.31e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966650 | AT1G15780.3 | 59.412 | 170 | 60 | 3 | 126 | 292 | 1193 | 1356 | 3.27e-54 | 190 |
| Msa0966650 | AT1G15780.1 | 59.412 | 170 | 60 | 3 | 126 | 292 | 1171 | 1334 | 3.55e-54 | 189 |
| Msa0966650 | AT2G10440.2 | 42.604 | 169 | 77 | 4 | 126 | 292 | 694 | 844 | 1.94e-31 | 124 |
| Msa0966650 | AT2G10440.1 | 40.782 | 179 | 76 | 4 | 126 | 292 | 774 | 934 | 2.13e-31 | 124 |
| Msa0966650 | AT5G64370.1 | 72.152 | 79 | 21 | 1 | 48 | 126 | 137 | 214 | 4.32e-27 | 109 |
| Msa0966650 | AT1G15780.2 | 57.732 | 97 | 38 | 2 | 126 | 219 | 1171 | 1267 | 3.21e-26 | 108 |
Find 79 sgRNAs with CRISPR-Local
Find 333 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTGATTGTAGGAATTT+TGG | 0.123361 | 6_3:+95239607 | Msa0966650:intron |
| TGGAAACTTGTCTATGAATA+TGG | 0.187776 | 6_3:-95240963 | None:intergenic |
| TACTCATGTGACTTTATAAA+TGG | 0.206790 | 6_3:-95241566 | None:intergenic |
| TGAACCACGGAGAGGTTATT+TGG | 0.224777 | 6_3:+95239772 | Msa0966650:CDS |
| GGGAATCACAGCAATATAAT+TGG | 0.229036 | 6_3:+95239813 | Msa0966650:CDS |
| TCCGAGTATGCACAACAATT+TGG | 0.240706 | 6_3:+95241310 | Msa0966650:CDS |
| GGAGAAGAATTAGGATAGTT+TGG | 0.245726 | 6_3:-95240941 | None:intergenic |
| GCTGCTGCTGAGTGGGTTCA+TGG | 0.304427 | 6_3:+95240735 | Msa0966650:CDS |
| GCAGGTTAATCATGCCCTTT+TGG | 0.305926 | 6_3:+95240629 | Msa0966650:intron |
| TATTCAGCCTCTGCGCTTGC+TGG | 0.317270 | 6_3:+95240913 | Msa0966650:CDS |
| ATGAATATGGGAGAAGAATT+AGG | 0.346819 | 6_3:-95240950 | None:intergenic |
| TCTCTATTTCGTTTAAGAAA+TGG | 0.351637 | 6_3:-95241540 | None:intergenic |
| CTCCTAGGCCAAAATTAAAA+AGG | 0.352934 | 6_3:-95241444 | None:intergenic |
| AAGTCTTTGCTATATCCTTA+AGG | 0.366345 | 6_3:-95241261 | None:intergenic |
| TTCATATCCCTCTCAAGAAA+TGG | 0.366645 | 6_3:-95239753 | None:intergenic |
| CTCACAACCTATGTCCCTTA+AGG | 0.372725 | 6_3:+95241246 | Msa0966650:CDS |
| TTTGCTGTATTTCTTCCAAA+AGG | 0.392527 | 6_3:-95240644 | None:intergenic |
| AATGAATTATTCTTAAATAG+TGG | 0.400998 | 6_3:+95241404 | Msa0966650:exon |
| TCAATTGATTCCCCGTCAAC+AGG | 0.402923 | 6_3:-95239684 | None:intergenic |
| CTACTACTGTGTCAATAATT+CGG | 0.407805 | 6_3:-95240674 | None:intergenic |
| TGGAACACTGCCGTTGTGAT+TGG | 0.411409 | 6_3:+95239792 | Msa0966650:CDS |
| GCTATTATTGAATAAACAAC+AGG | 0.420767 | 6_3:-95241502 | None:intergenic |
| GGAACATTCAGCTCTAAGTA+TGG | 0.422754 | 6_3:+95241337 | Msa0966650:CDS |
| CTGCTGCTGAGTGGGTTCAT+GGG | 0.428196 | 6_3:+95240736 | Msa0966650:CDS |
| TTATCTCACCGGGATTCAAC+TGG | 0.430039 | 6_3:-95240983 | None:intergenic |
| ACCAAATTGTTGTGCATACT+CGG | 0.438409 | 6_3:-95241311 | None:intergenic |
| GCTATATCCTTAAGGGACAT+AGG | 0.441593 | 6_3:-95241253 | None:intergenic |
| AGTCTTTGCTATATCCTTAA+GGG | 0.444176 | 6_3:-95241260 | None:intergenic |
| AGCAGCTGCTGCTGCTGAGT+GGG | 0.444550 | 6_3:+95240728 | Msa0966650:CDS |
| TTGCTGTATTTCTTCCAAAA+GGG | 0.460068 | 6_3:-95240643 | None:intergenic |
| GGAATCACAGCAATATAATT+GGG | 0.466717 | 6_3:+95239814 | Msa0966650:CDS |
| GGAACACTGCCGTTGTGATT+GGG | 0.476635 | 6_3:+95239793 | Msa0966650:CDS |
| GGAAACTTGTCTATGAATAT+GGG | 0.483866 | 6_3:-95240962 | None:intergenic |
| TCATATCCCTCTCAAGAAAT+GGG | 0.484312 | 6_3:-95239752 | None:intergenic |
| AGCAAGCGCAGAGGCTGAAT+AGG | 0.488171 | 6_3:-95240911 | None:intergenic |
| ACAATAACTTCAGGTTCTGC+AGG | 0.490279 | 6_3:-95237518 | None:intergenic |
| GAAATAACACCGCGAGCAGT+AGG | 0.494316 | 6_3:-95241289 | None:intergenic |
| CTCTAAGTATGGAGAAGGGC+AGG | 0.494774 | 6_3:+95241348 | Msa0966650:CDS |
| AGGGCAGGAGTTCACATCTT+GGG | 0.498030 | 6_3:+95241363 | Msa0966650:CDS |
| GAAGAATTAGGATAGTTTGG+AGG | 0.499904 | 6_3:-95240938 | None:intergenic |
| AATTTGCAGAACCTGTTGAC+GGG | 0.505913 | 6_3:+95239673 | Msa0966650:CDS |
| CACCTTGTAACAATAACTTC+AGG | 0.509017 | 6_3:-95237527 | None:intergenic |
| ATCTCAATATGCTTCACTAC+AGG | 0.514429 | 6_3:+95240809 | Msa0966650:CDS |
| AATAATGTTTGAAACCTCCT+AGG | 0.515891 | 6_3:-95241459 | None:intergenic |
| CAGCAGCTGCTGCTGCTGAG+TGG | 0.517771 | 6_3:+95240727 | Msa0966650:CDS |
| ACAAGTTTCCAGTTGAATCC+CGG | 0.532358 | 6_3:+95240975 | Msa0966650:CDS |
| TATAAGCCCATTTCTTGAGA+GGG | 0.534996 | 6_3:+95239746 | Msa0966650:CDS |
| AGAACTTTGTTCCTGCAACA+AGG | 0.538862 | 6_3:+95237475 | Msa0966650:intron |
| TTCAGCTCTAAGTATGGAGA+AGG | 0.541965 | 6_3:+95241343 | Msa0966650:CDS |
| AAGGGCAGGAGTTCACATCT+TGG | 0.542581 | 6_3:+95241362 | Msa0966650:CDS |
| ATCGGAAAAGTCTTCATGGC+AGG | 0.548689 | 6_3:+95236014 | None:intergenic |
| GAGTATGCACAACAATTTGG+TGG | 0.553199 | 6_3:+95241313 | Msa0966650:CDS |
| GAACTTTGTTCCTGCAACAA+GGG | 0.555390 | 6_3:+95237476 | Msa0966650:intron |
| AGGTTGTGAGAAATTACATA+AGG | 0.561974 | 6_3:-95241233 | None:intergenic |
| AAAGATGGGCTGAGAGACAC+AGG | 0.565080 | 6_3:-95240783 | None:intergenic |
| ATTCATAGGAAAACACAAAG+AGG | 0.573823 | 6_3:+95238232 | Msa0966650:intron |
| AACCTGAAGTTATTGTTACA+AGG | 0.575701 | 6_3:+95237525 | Msa0966650:CDS |
| CTTTGCACTGAAGTATAACA+TGG | 0.585333 | 6_3:+95239719 | Msa0966650:CDS |
| TCTCGTGTAGAGAAACCAAA+TGG | 0.585598 | 6_3:-95239636 | None:intergenic |
| TTATAAGCCCATTTCTTGAG+AGG | 0.587724 | 6_3:+95239745 | Msa0966650:CDS |
| GCAATATAATTGGGATACAC+AGG | 0.593877 | 6_3:+95239823 | Msa0966650:CDS |
| TTATGGCAGTAAGGGGAATG+AGG | 0.594861 | 6_3:+95241174 | Msa0966650:intron |
| ATTTCGTTTAAGAAATGGAG+AGG | 0.597227 | 6_3:-95241535 | None:intergenic |
| GAATTTGCAGAACCTGTTGA+CGG | 0.607240 | 6_3:+95239672 | Msa0966650:CDS |
| TCTCTACACGAGAGAAGAAG+TGG | 0.622564 | 6_3:+95239646 | Msa0966650:CDS |
| CTTTGTTCCTGCAACAAGGG+CGG | 0.624067 | 6_3:+95237479 | Msa0966650:CDS |
| ACTTGTGATCCTACTGCTCG+CGG | 0.635100 | 6_3:+95241280 | Msa0966650:CDS |
| AATGAAAGAACATTTGACAA+TGG | 0.635191 | 6_3:-95240760 | None:intergenic |
| TATGCACAACAATTTGGTGG+AGG | 0.647411 | 6_3:+95241316 | Msa0966650:CDS |
| CTTGAGAGGGATATGAACCA+CGG | 0.660131 | 6_3:+95239759 | Msa0966650:CDS |
| TATAATTGGGATACACAGGA+AGG | 0.665482 | 6_3:+95239827 | Msa0966650:CDS |
| TCAGCTCTAAGTATGGAGAA+GGG | 0.666350 | 6_3:+95241344 | Msa0966650:CDS |
| ACCTCAGTTGATATTCTACA+CGG | 0.667331 | 6_3:+95238282 | Msa0966650:CDS |
| ATTTGCAGAACCTGTTGACG+GGG | 0.676991 | 6_3:+95239674 | Msa0966650:CDS |
| GGAGGAACCAGCAAGCGCAG+AGG | 0.697641 | 6_3:-95240920 | None:intergenic |
| GAGGGATATGAACCACGGAG+AGG | 0.717220 | 6_3:+95239764 | Msa0966650:CDS |
| ACCGTGTAGAATATCAACTG+AGG | 0.734819 | 6_3:-95238283 | None:intergenic |
| GCTGTGATTCCCAATCACAA+CGG | 0.738812 | 6_3:-95239802 | None:intergenic |
| TGTTCCAAATAACCTCTCCG+TGG | 0.747550 | 6_3:-95239776 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAATTTGAATAAAAAAG+AGG | + | chr6_3:95236231-95236250 | Msa0966650:intron | 10.0% |
| !! | TAAAAAAATAAAAGACATTA+GGG | - | chr6_3:95238050-95238069 | None:intergenic | 10.0% |
| !! | ATAAAAAAATAAAAGACATT+AGG | - | chr6_3:95238051-95238070 | None:intergenic | 10.0% |
| !! | TGAATTTACAATTTATAAAT+TGG | + | chr6_3:95238610-95238629 | Msa0966650:intron | 10.0% |
| !!! | TAATTTCGGTTTTAATTATT+AGG | + | chr6_3:95236192-95236211 | Msa0966650:intron | 15.0% |
| !!! | AATTTCGGTTTTAATTATTA+GGG | + | chr6_3:95236193-95236212 | Msa0966650:intron | 15.0% |
| !! | TCTTGAAAGAAAAAAAAAAA+TGG | + | chr6_3:95236414-95236433 | Msa0966650:intron | 15.0% |
| !! | AACAAATCATAAATAACAAA+TGG | - | chr6_3:95236567-95236586 | None:intergenic | 15.0% |
| !!! | CAAATAATTTTATAAACCTA+AGG | - | chr6_3:95238358-95238377 | None:intergenic | 15.0% |
| !! | AAAATTCAAAATTTGATTGT+AGG | + | chr6_3:95239599-95239618 | Msa0966650:intron | 15.0% |
| !! | ATTGACATTAATATATGTTA+TGG | + | chr6_3:95240025-95240044 | Msa0966650:intron | 15.0% |
| !! | TGTATTAAAAAAATTTACAG+TGG | - | chr6_3:95240495-95240514 | None:intergenic | 15.0% |
| !! | AATGAATTATTCTTAAATAG+TGG | + | chr6_3:95241404-95241423 | Msa0966650:exon | 15.0% |
| !!! | GAATCAGTTTTTGTTAATTT+AGG | + | chr6_3:95236096-95236115 | Msa0966650:intron | 20.0% |
| !! | CAAAAACACATTATTATGAA+AGG | - | chr6_3:95236463-95236482 | None:intergenic | 20.0% |
| !! | TGGTTATGTTTATGATTAAT+AGG | + | chr6_3:95236508-95236527 | Msa0966650:intron | 20.0% |
| !! | TATGTTTATGATTAATAGGT+TGG | + | chr6_3:95236512-95236531 | Msa0966650:intron | 20.0% |
| !! | TAGAAAGGAAAAAACTTAAA+TGG | + | chr6_3:95236653-95236672 | Msa0966650:intron | 20.0% |
| !!! | TAAAAAGGGATTTTTGATAA+TGG | + | chr6_3:95236709-95236728 | Msa0966650:intron | 20.0% |
| !!! | AAAAAGGGATTTTTGATAAT+GGG | + | chr6_3:95236710-95236729 | Msa0966650:intron | 20.0% |
| !!! | ATAAACGATTGAAAATTTTC+AGG | - | chr6_3:95236752-95236771 | None:intergenic | 20.0% |
| !!! | TTTTGGGATTAAATATAACA+TGG | + | chr6_3:95237152-95237171 | Msa0966650:intron | 20.0% |
| !! | AAATATAACATGGAAAATAG+TGG | + | chr6_3:95237162-95237181 | Msa0966650:intron | 20.0% |
| !!! | TGTGTATTCATATATTTTGT+TGG | - | chr6_3:95237208-95237227 | None:intergenic | 20.0% |
| !!! | TTACTTTGTTCCATTTTTAA+AGG | + | chr6_3:95237390-95237409 | Msa0966650:intron | 20.0% |
| !!! | TATCACTAAATTTGTTTTGA+TGG | + | chr6_3:95237434-95237453 | Msa0966650:intron | 20.0% |
| !!! | ACTTTTCAAAACAAAAGTTA+AGG | - | chr6_3:95237559-95237578 | None:intergenic | 20.0% |
| !! | AAAATAGTTGAAGAACTAAA+TGG | + | chr6_3:95237592-95237611 | Msa0966650:intron | 20.0% |
| !! | AGATTTCTATCTTTATTCAT+AGG | + | chr6_3:95238218-95238237 | Msa0966650:intron | 20.0% |
| !! | TTTACCTATCTATATTTGTA+TGG | - | chr6_3:95238439-95238458 | None:intergenic | 20.0% |
| !! | TACAATTTATAAATTGGCTA+TGG | + | chr6_3:95238616-95238635 | Msa0966650:intron | 20.0% |
| !! | TTTATATAAACAAACATCGA+AGG | - | chr6_3:95239582-95239601 | None:intergenic | 20.0% |
| !!! | AAATTTGATTGTAGGAATTT+TGG | + | chr6_3:95239607-95239626 | Msa0966650:intron | 20.0% |
| !! | ACATTAATATATGTTATGGT+AGG | + | chr6_3:95240029-95240048 | Msa0966650:intron | 20.0% |
| !! | TTTAGAGAAATATGGAATAT+CGG | - | chr6_3:95240247-95240266 | None:intergenic | 20.0% |
| !!! | TTGATTTGCTTTTCTAAAAA+GGG | + | chr6_3:95240293-95240312 | Msa0966650:intron | 20.0% |
| !!! | CATATTGAGATTTTAAAGAT+GGG | - | chr6_3:95240800-95240819 | None:intergenic | 20.0% |
| !!! | TAGTGTTATTATATACGTTA+TGG | + | chr6_3:95241157-95241176 | Msa0966650:intron | 20.0% |
| !!! | TATGAAGACCTTTTTAATTT+TGG | + | chr6_3:95241436-95241455 | Msa0966650:three_prime_UTR | 20.0% |
| ! | TTTCTTTCAATCTGATGTTA+AGG | + | chr6_3:95236134-95236153 | Msa0966650:intron | 25.0% |
| ! | TTCTTTCAATCTGATGTTAA+GGG | + | chr6_3:95236135-95236154 | Msa0966650:intron | 25.0% |
| !!! | GCATTTTTTTCTTCTTTTCT+GGG | + | chr6_3:95236168-95236187 | Msa0966650:intron | 25.0% |
| !!! | TTGTTGTTGTTTTCTGAATT+AGG | + | chr6_3:95236361-95236380 | Msa0966650:intron | 25.0% |
| !!! | TGTTGTTGTTTTCTGAATTA+GGG | + | chr6_3:95236362-95236381 | Msa0966650:intron | 25.0% |
| !!! | AAAATGGAATTTTGTTGTCT+TGG | + | chr6_3:95236430-95236449 | Msa0966650:intron | 25.0% |
| !!! | TAATGTGTTTTTGCTGATAT+TGG | + | chr6_3:95236470-95236489 | Msa0966650:intron | 25.0% |
| !!! | ATTGGTAATGTTATGTGATT+TGG | + | chr6_3:95236488-95236507 | Msa0966650:intron | 25.0% |
| !! | ATTTTTCATTATGCTGTTCT+AGG | + | chr6_3:95236614-95236633 | Msa0966650:intron | 25.0% |
| !!! | ATTTTTGGGATTATGTAGAA+AGG | + | chr6_3:95236638-95236657 | Msa0966650:intron | 25.0% |
| !! | AAATCTAAAGTTAAATCCCT+TGG | - | chr6_3:95236879-95236898 | None:intergenic | 25.0% |
| !!! | TCACTTGGTTTTATATAACT+TGG | + | chr6_3:95236907-95236926 | Msa0966650:intron | 25.0% |
| ! | AAAATTCTCCCAATGATAAA+TGG | + | chr6_3:95237012-95237031 | Msa0966650:intron | 25.0% |
| ! | AGACATTACCATTTATCATT+GGG | - | chr6_3:95237023-95237042 | None:intergenic | 25.0% |
| ! | GAAAATAAATTAATGTAGCC+AGG | - | chr6_3:95237286-95237305 | None:intergenic | 25.0% |
| !!! | CTACATTAATTTATTTTCGC+CGG | + | chr6_3:95237288-95237307 | Msa0966650:intron | 25.0% |
| ! | TTTAGTGATACAATGTCTTA+AGG | - | chr6_3:95237424-95237443 | None:intergenic | 25.0% |
| !!! | TTTGGTTTTGGTTCTAATAA+TGG | + | chr6_3:95237730-95237749 | Msa0966650:intron | 25.0% |
| !! | AATTCTGGAAGAAATAAGAT+TGG | - | chr6_3:95237891-95237910 | None:intergenic | 25.0% |
| ! | TAACTCATATGAGTTAATTC+TGG | - | chr6_3:95237906-95237925 | None:intergenic | 25.0% |
| !! | TCAACTTTTCCATTGAATTT+CGG | + | chr6_3:95237929-95237948 | Msa0966650:intron | 25.0% |
| ! | TGATATTATATCTGCAAACA+TGG | + | chr6_3:95238327-95238346 | Msa0966650:intron | 25.0% |
| !!! | ATTGAAGTATTTTGTCAAAG+TGG | + | chr6_3:95238411-95238430 | Msa0966650:intron | 25.0% |
| !!! | TTGAAGTATTTTGTCAAAGT+GGG | + | chr6_3:95238412-95238431 | Msa0966650:intron | 25.0% |
| ! | AGTGAAAATACTAATCAGTT+AGG | - | chr6_3:95238663-95238682 | None:intergenic | 25.0% |
| !! | TAACTGATTAGTATTTTCAC+TGG | + | chr6_3:95238662-95238681 | Msa0966650:intron | 25.0% |
| ! | GCATAAATTACTACACTAAA+AGG | - | chr6_3:95239000-95239019 | None:intergenic | 25.0% |
| ! | AAATATCCATATATGTCACT+TGG | - | chr6_3:95239149-95239168 | None:intergenic | 25.0% |
| !! | AGTGAGTATAAAGCATTAAA+GGG | - | chr6_3:95239365-95239384 | None:intergenic | 25.0% |
| !! | TAGTGAGTATAAAGCATTAA+AGG | - | chr6_3:95239366-95239385 | None:intergenic | 25.0% |
| ! | TTTATTAGATAGCTGAAAGA+CGG | - | chr6_3:95239895-95239914 | None:intergenic | 25.0% |
| ! | TATTATATGGAAGGAAATAC+AGG | + | chr6_3:95239971-95239990 | Msa0966650:intron | 25.0% |
| ! | CAAATTCTGTTTCAAATACA+GGG | - | chr6_3:95240000-95240019 | None:intergenic | 25.0% |
| ! | AAGTTTAACAGTTTAAAGGA+TGG | - | chr6_3:95240057-95240076 | None:intergenic | 25.0% |
| ! | CCAAAAGTTTAACAGTTTAA+AGG | - | chr6_3:95240061-95240080 | None:intergenic | 25.0% |
| !! | CCTTTAAACTGTTAAACTTT+TGG | + | chr6_3:95240058-95240077 | Msa0966650:intron | 25.0% |
| ! | AAACATGTTAAACTCTTATC+TGG | + | chr6_3:95240180-95240199 | Msa0966650:intron | 25.0% |
| ! | AATTATTCTAGCATAGATGT+AGG | + | chr6_3:95240221-95240240 | Msa0966650:intron | 25.0% |
| !!! | GTTGATTTGCTTTTCTAAAA+AGG | + | chr6_3:95240292-95240311 | Msa0966650:intron | 25.0% |
| ! | AAACTCATAAAAGCTATTAG+AGG | + | chr6_3:95240346-95240365 | Msa0966650:intron | 25.0% |
| ! | AACTCATAAAAGCTATTAGA+GGG | + | chr6_3:95240347-95240366 | Msa0966650:intron | 25.0% |
| !! | CATTTGGAATATGTTTGATT+TGG | + | chr6_3:95240396-95240415 | Msa0966650:intron | 25.0% |
| ! | ACTGTAAACTAATCAAACAT+GGG | - | chr6_3:95240450-95240469 | None:intergenic | 25.0% |
| ! | AACTGTAAACTAATCAAACA+TGG | - | chr6_3:95240451-95240470 | None:intergenic | 25.0% |
| ! | AAAATTTACAGTGGCTTAAT+GGG | - | chr6_3:95240486-95240505 | None:intergenic | 25.0% |
| ! | AAAAATTTACAGTGGCTTAA+TGG | - | chr6_3:95240487-95240506 | None:intergenic | 25.0% |
| ! | AATGAAAGAACATTTGACAA+TGG | - | chr6_3:95240763-95240782 | None:intergenic | 25.0% |
| !!! | GCATATTGAGATTTTAAAGA+TGG | - | chr6_3:95240801-95240820 | None:intergenic | 25.0% |
| ! | AAAAATCAGTTGCAAAATCT+GGG | - | chr6_3:95240843-95240862 | None:intergenic | 25.0% |
| ! | AAAAAATCAGTTGCAAAATC+TGG | - | chr6_3:95240844-95240863 | None:intergenic | 25.0% |
| ! | AAGGTGATAAAACACAATTA+AGG | - | chr6_3:95240884-95240903 | None:intergenic | 25.0% |
| ! | GCAGCAAAATTTAAAGATAA+GGG | - | chr6_3:95241120-95241139 | None:intergenic | 25.0% |
| ! | GCTATTATTGAATAAACAAC+AGG | - | chr6_3:95241505-95241524 | None:intergenic | 25.0% |
| ! | TCTCTATTTCGTTTAAGAAA+TGG | - | chr6_3:95241543-95241562 | None:intergenic | 25.0% |
| !!! | CGCATTTTTTTCTTCTTTTC+TGG | + | chr6_3:95236167-95236186 | Msa0966650:intron | 30.0% |
| ! | CTTCTTTTCTGGGTTAATTT+CGG | + | chr6_3:95236178-95236197 | Msa0966650:intron | 30.0% |
| !! | GGTAATTTGCTAATGTTTGA+TGG | + | chr6_3:95236252-95236271 | Msa0966650:intron | 30.0% |
| ! | ATTAGGGTATGCTTGAATTT+TGG | + | chr6_3:95236378-95236397 | Msa0966650:intron | 30.0% |
| ! | TTAGGGTATGCTTGAATTTT+GGG | + | chr6_3:95236379-95236398 | Msa0966650:intron | 30.0% |
| !! | GAATTTTGTTGTCTTGGTTA+AGG | + | chr6_3:95236436-95236455 | Msa0966650:intron | 30.0% |
| ! | TTATGATTAATAGGTTGGAG+TGG | + | chr6_3:95236517-95236536 | Msa0966650:intron | 30.0% |
| !! | TATGCTGTTCTAGGTATTTT+TGG | + | chr6_3:95236623-95236642 | Msa0966650:intron | 30.0% |
| !! | ATGCTGTTCTAGGTATTTTT+GGG | + | chr6_3:95236624-95236643 | Msa0966650:intron | 30.0% |
| CAATCGTTTATCTTTATCCA+TGG | + | chr6_3:95236761-95236780 | Msa0966650:intron | 30.0% | |
| TAGATTTGATTGCAATCACT+TGG | + | chr6_3:95236892-95236911 | Msa0966650:intron | 30.0% | |
| ! | ATCATTGGGAGAATTTTTGA+GGG | - | chr6_3:95237009-95237028 | None:intergenic | 30.0% |
| ! | TATCATTGGGAGAATTTTTG+AGG | - | chr6_3:95237010-95237029 | None:intergenic | 30.0% |
| GAGACATTACCATTTATCAT+TGG | - | chr6_3:95237024-95237043 | None:intergenic | 30.0% | |
| ! | ATGATAAATGGTAATGTCTC+AGG | + | chr6_3:95237024-95237043 | Msa0966650:intron | 30.0% |
| ! | CAGTAACAATCATTTAGAGT+TGG | - | chr6_3:95237108-95237127 | None:intergenic | 30.0% |
| AAATGATTGTTACTGTCAAC+TGG | + | chr6_3:95237113-95237132 | Msa0966650:intron | 30.0% | |
| ! | TTTCCATTATGCAGGATTTT+GGG | + | chr6_3:95237136-95237155 | Msa0966650:intron | 30.0% |
| TGAATACACAACAACAATCA+AGG | + | chr6_3:95237218-95237237 | Msa0966650:intron | 30.0% | |
| ! | GGAAACACAACCTTTAAAAA+TGG | - | chr6_3:95237403-95237422 | None:intergenic | 30.0% |
| AACCTGAAGTTATTGTTACA+AGG | + | chr6_3:95237525-95237544 | Msa0966650:CDS | 30.0% | |
| ATAGTTGAAGAACTAAATGG+CGG | + | chr6_3:95237595-95237614 | Msa0966650:intron | 30.0% | |
| TCATGAGCAAACACAATAAA+AGG | - | chr6_3:95237663-95237682 | None:intergenic | 30.0% | |
| ! | TACCTTGTCTTTGTTACTTA+TGG | + | chr6_3:95237700-95237719 | Msa0966650:intron | 30.0% |
| GTTCTAATATGATTTGAGTC+TGG | + | chr6_3:95237803-95237822 | Msa0966650:intron | 30.0% | |
| AAATGGTTTCCGAAATTCAA+TGG | - | chr6_3:95237941-95237960 | None:intergenic | 30.0% | |
| ATTCATAGGAAAACACAAAG+AGG | + | chr6_3:95238232-95238251 | Msa0966650:intron | 30.0% | |
| !! | TGAAGTATTTTGTCAAAGTG+GGG | + | chr6_3:95238413-95238432 | Msa0966650:intron | 30.0% |
| ! | AATCCTCTAGATTTTGTGAA+GGG | - | chr6_3:95238589-95238608 | None:intergenic | 30.0% |
| ! | AAATCCTCTAGATTTTGTGA+AGG | - | chr6_3:95238590-95238609 | None:intergenic | 30.0% |
| ATACTAATCAGTTAGGAAGA+GGG | - | chr6_3:95238656-95238675 | None:intergenic | 30.0% | |
| AATACTAATCAGTTAGGAAG+AGG | - | chr6_3:95238657-95238676 | None:intergenic | 30.0% | |
| TTGCAGCATAATATAAGAAG+AGG | - | chr6_3:95238854-95238873 | None:intergenic | 30.0% | |
| !! | AACCCATTCACACTTATTTT+TGG | + | chr6_3:95239324-95239343 | Msa0966650:intron | 30.0% |
| TGCCAAAAATAAGTGTGAAT+GGG | - | chr6_3:95239329-95239348 | None:intergenic | 30.0% | |
| TTGCCAAAAATAAGTGTGAA+TGG | - | chr6_3:95239330-95239349 | None:intergenic | 30.0% | |
| !!! | ACACTTATTTTTGGCAATTC+TGG | + | chr6_3:95239333-95239352 | Msa0966650:intron | 30.0% |
| !!! | CACTTATTTTTGGCAATTCT+GGG | + | chr6_3:95239334-95239353 | Msa0966650:intron | 30.0% |
| !!! | ACTTATTTTTGGCAATTCTG+GGG | + | chr6_3:95239335-95239354 | Msa0966650:intron | 30.0% |
| ! | GTGAGTATAAAGCATTAAAG+GGG | - | chr6_3:95239364-95239383 | None:intergenic | 30.0% |
| TTGTGTATTCAATTGTTTGC+AGG | - | chr6_3:95239392-95239411 | None:intergenic | 30.0% | |
| ! | TTTTCCATCATGACAAAGAA+AGG | + | chr6_3:95239447-95239466 | Msa0966650:intron | 30.0% |
| TTTCCATCATGACAAAGAAA+GGG | + | chr6_3:95239448-95239467 | Msa0966650:intron | 30.0% | |
| GGAATCACAGCAATATAATT+GGG | + | chr6_3:95239814-95239833 | Msa0966650:CDS | 30.0% | |
| CCAAATTCTGTTTCAAATAC+AGG | - | chr6_3:95240001-95240020 | None:intergenic | 30.0% | |
| ! | CCTGTATTTGAAACAGAATT+TGG | + | chr6_3:95239998-95240017 | Msa0966650:intron | 30.0% |
| ! | TGTTAAACTTTTGGCATGAA+TGG | + | chr6_3:95240067-95240086 | Msa0966650:intron | 30.0% |
| ACAAGGGTTGAAAACAATTT+CGG | - | chr6_3:95240095-95240114 | None:intergenic | 30.0% | |
| ATAAAACAACTGACCTCTAT+TGG | - | chr6_3:95240151-95240170 | None:intergenic | 30.0% | |
| !! | GGTCAGTTGTTTTATATTGA+TGG | + | chr6_3:95240156-95240175 | Msa0966650:intron | 30.0% |
| AAAGACGGTTTAGAGAAATA+TGG | - | chr6_3:95240255-95240274 | None:intergenic | 30.0% | |
| ATATGCTACTGTCATTAACT+TGG | + | chr6_3:95240370-95240389 | Msa0966650:intron | 30.0% | |
| TTGCTGTATTTCTTCCAAAA+GGG | - | chr6_3:95240646-95240665 | None:intergenic | 30.0% | |
| ! | TTTGCTGTATTTCTTCCAAA+AGG | - | chr6_3:95240647-95240666 | None:intergenic | 30.0% |
| CTACTACTGTGTCAATAATT+CGG | - | chr6_3:95240677-95240696 | None:intergenic | 30.0% | |
| ATGAATATGGGAGAAGAATT+AGG | - | chr6_3:95240953-95240972 | None:intergenic | 30.0% | |
| GGAAACTTGTCTATGAATAT+GGG | - | chr6_3:95240965-95240984 | None:intergenic | 30.0% | |
| TGGAAACTTGTCTATGAATA+TGG | - | chr6_3:95240966-95240985 | None:intergenic | 30.0% | |
| AAAATGTTCCATTATCTCAC+CGG | - | chr6_3:95240997-95241016 | None:intergenic | 30.0% | |
| ! | GTATTTTCTCTTCCAAATAG+TGG | + | chr6_3:95241064-95241083 | Msa0966650:intron | 30.0% |
| CGCAGCAAAATTTAAAGATA+AGG | - | chr6_3:95241121-95241140 | None:intergenic | 30.0% | |
| TTATATACGTTATGGCAGTA+AGG | + | chr6_3:95241165-95241184 | Msa0966650:intron | 30.0% | |
| TATATACGTTATGGCAGTAA+GGG | + | chr6_3:95241166-95241185 | Msa0966650:intron | 30.0% | |
| AGGTTGTGAGAAATTACATA+AGG | - | chr6_3:95241236-95241255 | None:intergenic | 30.0% | |
| ! | AGTCTTTGCTATATCCTTAA+GGG | - | chr6_3:95241263-95241282 | None:intergenic | 30.0% |
| ! | AAGTCTTTGCTATATCCTTA+AGG | - | chr6_3:95241264-95241283 | None:intergenic | 30.0% |
| ! | AATAATGTTTGAAACCTCCT+AGG | - | chr6_3:95241462-95241481 | None:intergenic | 30.0% |
| ATTTCGTTTAAGAAATGGAG+AGG | - | chr6_3:95241538-95241557 | None:intergenic | 30.0% | |
| TGATCTCAGATGAACAAAAG+AGG | - | chr6_3:95236051-95236070 | None:intergenic | 35.0% | |
| !!! | GGATTGGTTTTTATGAGTTC+TGG | + | chr6_3:95236281-95236300 | Msa0966650:intron | 35.0% |
| TTGTTGCTGAGATTTGAGAA+TGG | + | chr6_3:95236325-95236344 | Msa0966650:intron | 35.0% | |
| ! | GACATTTTGTATCCAAGAGA+AGG | + | chr6_3:95236539-95236558 | Msa0966650:intron | 35.0% |
| TAACAAATGGTACCTTCTCT+TGG | - | chr6_3:95236554-95236573 | None:intergenic | 35.0% | |
| ! | ACTTTTCTTCCTGTAACCAA+GGG | + | chr6_3:95236860-95236879 | Msa0966650:intron | 35.0% |
| AAGTTAAATCCCTTGGTTAC+AGG | - | chr6_3:95236872-95236891 | None:intergenic | 35.0% | |
| ! | GTTTCCATTATGCAGGATTT+TGG | + | chr6_3:95237135-95237154 | Msa0966650:intron | 35.0% |
| AATCCCAAAATCCTGCATAA+TGG | - | chr6_3:95237142-95237161 | None:intergenic | 35.0% | |
| !!! | ATTTTGTTGGTAATTCCCTC+TGG | - | chr6_3:95237195-95237214 | None:intergenic | 35.0% |
| !! | CATTAATTTATTTTCGCCGG+TGG | + | chr6_3:95237291-95237310 | Msa0966650:intron | 35.0% |
| TAACGTTATGACACCTACTA+TGG | - | chr6_3:95237323-95237342 | None:intergenic | 35.0% | |
| CAAATGTACCTTGTTCTTCT+CGG | - | chr6_3:95237352-95237371 | None:intergenic | 35.0% | |
| CACCTTGTAACAATAACTTC+AGG | - | chr6_3:95237530-95237549 | None:intergenic | 35.0% | |
| CACCATAAGTAACAAAGACA+AGG | - | chr6_3:95237705-95237724 | None:intergenic | 35.0% | |
| ! | CTTGTCTTTGTTACTTATGG+TGG | + | chr6_3:95237703-95237722 | Msa0966650:intron | 35.0% |
| ! | GTTACTTATGGTGGTTGTTT+TGG | + | chr6_3:95237712-95237731 | Msa0966650:intron | 35.0% |
| !!! | TATGGTGGTTGTTTTGGTTT+TGG | + | chr6_3:95237718-95237737 | Msa0966650:intron | 35.0% |
| AATGGCTAATGATTTGAGTC+TGG | + | chr6_3:95237748-95237767 | Msa0966650:intron | 35.0% | |
| !! | TTTGAGTCTGGTGTTACTTA+TGG | + | chr6_3:95237760-95237779 | Msa0966650:intron | 35.0% |
| !! | TTTGAGTCTGGTGTTACTTA+TGG | + | chr6_3:95237760-95237779 | Msa0966650:intron | 35.0% |
| ! | GGTGGTCGTATGTTAATTTT+TGG | + | chr6_3:95237836-95237855 | Msa0966650:intron | 35.0% |
| AAACTCATGCAGACATGTAA+AGG | - | chr6_3:95237978-95237997 | None:intergenic | 35.0% | |
| ! | ACCTCAGTTGATATTCTACA+CGG | + | chr6_3:95238282-95238301 | Msa0966650:CDS | 35.0% |
| ACACGGTTGTTTGAATTGTA+AGG | + | chr6_3:95238299-95238318 | Msa0966650:intron | 35.0% | |
| AAAAACAGTCTACTGCTTGA+TGG | + | chr6_3:95238530-95238549 | Msa0966650:intron | 35.0% | |
| ! | ATCCTCTAGATTTTGTGAAG+GGG | - | chr6_3:95238588-95238607 | None:intergenic | 35.0% |
| TACTAATCAGTTAGGAAGAG+GGG | - | chr6_3:95238655-95238674 | None:intergenic | 35.0% | |
| ! | GGCATTGGAACATATTAATG+AGG | + | chr6_3:95238760-95238779 | Msa0966650:intron | 35.0% |
| TGAAAGCAGAAGCTCTTTAA+TGG | + | chr6_3:95238822-95238841 | Msa0966650:intron | 35.0% | |
| !! | TTATGCCAATTGATTCGAGT+TGG | + | chr6_3:95239014-95239033 | Msa0966650:intron | 35.0% |
| GTTAACCAACTCGAATCAAT+TGG | - | chr6_3:95239022-95239041 | None:intergenic | 35.0% | |
| ATATCAGCTGAGTAGATATG+AGG | + | chr6_3:95239053-95239072 | Msa0966650:intron | 35.0% | |
| AAGTTGTCTACTTCAGACTA+TGG | + | chr6_3:95239181-95239200 | Msa0966650:intron | 35.0% | |
| ! | ACAACAAGAAGAAAAGGTGT+CGG | + | chr6_3:95239272-95239291 | Msa0966650:intron | 35.0% |
| !!! | CTTATTTTTGGCAATTCTGG+GGG | + | chr6_3:95239336-95239355 | Msa0966650:intron | 35.0% |
| TTTCCCTTTCTTTGTCATGA+TGG | - | chr6_3:95239454-95239473 | None:intergenic | 35.0% | |
| CATGACAAAGAAAGGGAAAA+AGG | + | chr6_3:95239455-95239474 | Msa0966650:intron | 35.0% | |
| ACACTTTATCGACCAAGAAA+AGG | + | chr6_3:95239536-95239555 | Msa0966650:intron | 35.0% | |
| ! | TCTCAAAGATAGCCTTTTCT+TGG | - | chr6_3:95239551-95239570 | None:intergenic | 35.0% |
| ! | GAATTTTGGATGATGCCATT+TGG | + | chr6_3:95239621-95239640 | Msa0966650:CDS | 35.0% |
| CTTTGCACTGAAGTATAACA+TGG | + | chr6_3:95239719-95239738 | Msa0966650:CDS | 35.0% | |
| TTATAAGCCCATTTCTTGAG+AGG | + | chr6_3:95239745-95239764 | Msa0966650:CDS | 35.0% | |
| TATAAGCCCATTTCTTGAGA+GGG | + | chr6_3:95239746-95239765 | Msa0966650:CDS | 35.0% | |
| TCATATCCCTCTCAAGAAAT+GGG | - | chr6_3:95239755-95239774 | None:intergenic | 35.0% | |
| TTCATATCCCTCTCAAGAAA+TGG | - | chr6_3:95239756-95239775 | None:intergenic | 35.0% | |
| GGGAATCACAGCAATATAAT+TGG | + | chr6_3:95239813-95239832 | Msa0966650:CDS | 35.0% | |
| GCAATATAATTGGGATACAC+AGG | + | chr6_3:95239823-95239842 | Msa0966650:CDS | 35.0% | |
| TATAATTGGGATACACAGGA+AGG | + | chr6_3:95239827-95239846 | Msa0966650:CDS | 35.0% | |
| CTTTCTACTTCCACTTCTAA+TGG | + | chr6_3:95239863-95239882 | Msa0966650:intron | 35.0% | |
| ! | CACTGAGAGTGCATATTATA+TGG | + | chr6_3:95239958-95239977 | Msa0966650:intron | 35.0% |
| ! | GAGAGTGCATATTATATGGA+AGG | + | chr6_3:95239962-95239981 | Msa0966650:intron | 35.0% |
| TGAAGCAAGTACTTCAAAGA+CGG | - | chr6_3:95240270-95240289 | None:intergenic | 35.0% | |
| ! | CAATAACCGATCTGATGTTT+TGG | + | chr6_3:95240573-95240592 | Msa0966650:intron | 35.0% |
| CAAAGACCAAAACATCAGAT+CGG | - | chr6_3:95240582-95240601 | None:intergenic | 35.0% | |
| GATATAGAGTTTGTGTACTG+TGG | + | chr6_3:95240607-95240626 | Msa0966650:intron | 35.0% | |
| ATCTCAATATGCTTCACTAC+AGG | + | chr6_3:95240809-95240828 | Msa0966650:CDS | 35.0% | |
| AATATGCTTCACTACAGGTA+TGG | + | chr6_3:95240814-95240833 | Msa0966650:intron | 35.0% | |
| GAAGAATTAGGATAGTTTGG+AGG | - | chr6_3:95240941-95240960 | None:intergenic | 35.0% | |
| GGAGAAGAATTAGGATAGTT+TGG | - | chr6_3:95240944-95240963 | None:intergenic | 35.0% | |
| AAATGTTCCATTATCTCACC+GGG | - | chr6_3:95240996-95241015 | None:intergenic | 35.0% | |
| ATATACGTTATGGCAGTAAG+GGG | + | chr6_3:95241167-95241186 | Msa0966650:intron | 35.0% | |
| ACCAAATTGTTGTGCATACT+CGG | - | chr6_3:95241314-95241333 | None:intergenic | 35.0% | |
| !!! | GACCTTTTTAATTTTGGCCT+AGG | + | chr6_3:95241442-95241461 | Msa0966650:three_prime_UTR | 35.0% |
| CTCCTAGGCCAAAATTAAAA+AGG | - | chr6_3:95241447-95241466 | None:intergenic | 35.0% | |
| !!! | CTTTTTAATTTTGGCCTAGG+AGG | + | chr6_3:95241445-95241464 | Msa0966650:three_prime_UTR | 35.0% |
| ! | GCTAATGTTTGATGGCAGTT+TGG | + | chr6_3:95236260-95236279 | Msa0966650:intron | 40.0% |
| ! | TGTTTGATGGCAGTTTGGAT+TGG | + | chr6_3:95236265-95236284 | Msa0966650:intron | 40.0% |
| AATGGTCTGTGTCAAGTGAA+TGG | + | chr6_3:95236671-95236690 | Msa0966650:intron | 40.0% | |
| ! | CAACAAAATCAGAGTGTCCA+TGG | - | chr6_3:95236781-95236800 | None:intergenic | 40.0% |
| ! | GACTTTTCTTCCTGTAACCA+AGG | + | chr6_3:95236859-95236878 | Msa0966650:intron | 40.0% |
| ! | TCAACTGGTTTCCATTATGC+AGG | + | chr6_3:95237128-95237147 | Msa0966650:intron | 40.0% |
| TATAGTAGCCGAGAAGAACA+AGG | + | chr6_3:95237341-95237360 | Msa0966650:intron | 40.0% | |
| AGAACTTTGTTCCTGCAACA+AGG | + | chr6_3:95237475-95237494 | Msa0966650:intron | 40.0% | |
| GAACTTTGTTCCTGCAACAA+GGG | + | chr6_3:95237476-95237495 | Msa0966650:intron | 40.0% | |
| ! | ACAATAACTTCAGGTTCTGC+AGG | - | chr6_3:95237521-95237540 | None:intergenic | 40.0% |
| ! | ACGTGAAGACGATGATAATG+CGG | - | chr6_3:95238009-95238028 | None:intergenic | 40.0% |
| ACCGTGTAGAATATCAACTG+AGG | - | chr6_3:95238286-95238305 | None:intergenic | 40.0% | |
| GGGGCCATACAAATATAGAT+AGG | + | chr6_3:95238432-95238451 | Msa0966650:intron | 40.0% | |
| TTCCCCTTCACAAAATCTAG+AGG | + | chr6_3:95238583-95238602 | Msa0966650:intron | 40.0% | |
| ACTAATCAGTTAGGAAGAGG+GGG | - | chr6_3:95238654-95238673 | None:intergenic | 40.0% | |
| AGCAGAAGCTCTTTAATGGT+TGG | + | chr6_3:95238826-95238845 | Msa0966650:intron | 40.0% | |
| AATGATTGTCCAATTGCTGC+TGG | + | chr6_3:95239120-95239139 | Msa0966650:intron | 40.0% | |
| TGGTTGCCAAGTGACATATA+TGG | + | chr6_3:95239140-95239159 | Msa0966650:intron | 40.0% | |
| TTGTCTACTTCAGACTATGG+AGG | + | chr6_3:95239184-95239203 | Msa0966650:intron | 40.0% | |
| CTTAAAGCCTACTTTCACCT+AGG | + | chr6_3:95239219-95239238 | Msa0966650:intron | 40.0% | |
| AAGCTTTCCTAGGTGAAAGT+AGG | - | chr6_3:95239229-95239248 | None:intergenic | 40.0% | |
| GCTGGAACAACAAGAAGAAA+AGG | + | chr6_3:95239266-95239285 | Msa0966650:intron | 40.0% | |
| TCTCGTGTAGAGAAACCAAA+TGG | - | chr6_3:95239639-95239658 | None:intergenic | 40.0% | |
| GAATTTGCAGAACCTGTTGA+CGG | + | chr6_3:95239672-95239691 | Msa0966650:CDS | 40.0% | |
| AATTTGCAGAACCTGTTGAC+GGG | + | chr6_3:95239673-95239692 | Msa0966650:CDS | 40.0% | |
| ACGGTCTATTCCATTAGAAG+TGG | - | chr6_3:95239876-95239895 | None:intergenic | 40.0% | |
| ! | TGCTACTGTCATTAACTTGG+TGG | + | chr6_3:95240373-95240392 | Msa0966650:intron | 40.0% |
| ! | GTCATTAACTTGGTGGCATT+TGG | + | chr6_3:95240380-95240399 | Msa0966650:intron | 40.0% |
| !!! | CGATCTGATGTTTTGGTCTT+TGG | + | chr6_3:95240580-95240599 | Msa0966650:intron | 40.0% |
| ACAAGTTTCCAGTTGAATCC+CGG | + | chr6_3:95240975-95240994 | Msa0966650:CDS | 40.0% | |
| TTGTGTAGACTGCCACTATT+TGG | - | chr6_3:95241079-95241098 | None:intergenic | 40.0% | |
| GCTATATCCTTAAGGGACAT+AGG | - | chr6_3:95241256-95241275 | None:intergenic | 40.0% | |
| TCCGAGTATGCACAACAATT+TGG | + | chr6_3:95241310-95241329 | Msa0966650:CDS | 40.0% | |
| GAGTATGCACAACAATTTGG+TGG | + | chr6_3:95241313-95241332 | Msa0966650:CDS | 40.0% | |
| ! | TATGCACAACAATTTGGTGG+AGG | + | chr6_3:95241316-95241335 | Msa0966650:CDS | 40.0% |
| !! | GGAACATTCAGCTCTAAGTA+TGG | + | chr6_3:95241337-95241356 | Msa0966650:CDS | 40.0% |
| !! | TTCAGCTCTAAGTATGGAGA+AGG | + | chr6_3:95241343-95241362 | Msa0966650:CDS | 40.0% |
| !! | TCAGCTCTAAGTATGGAGAA+GGG | + | chr6_3:95241344-95241363 | Msa0966650:CDS | 40.0% |
| TCAAGTGAATGGTCTCCAGA+TGG | + | chr6_3:95236682-95236701 | Msa0966650:intron | 45.0% | |
| CAAGTGAATGGTCTCCAGAT+GGG | + | chr6_3:95236683-95236702 | Msa0966650:intron | 45.0% | |
| TCTCCAGATGGGTGCTAAAA+AGG | + | chr6_3:95236694-95236713 | Msa0966650:intron | 45.0% | |
| CTCCAGATGGGTGCTAAAAA+GGG | + | chr6_3:95236695-95236714 | Msa0966650:intron | 45.0% | |
| !! | ATCCCTTTTTAGCACCCATC+TGG | - | chr6_3:95236700-95236719 | None:intergenic | 45.0% |
| CCTACTATGGTGATATCCAC+CGG | - | chr6_3:95237310-95237329 | None:intergenic | 45.0% | |
| !! | GAGTCTGGTGTTACTTATGG+TGG | + | chr6_3:95237763-95237782 | Msa0966650:intron | 45.0% |
| !! | GAGTCTGGTGTTACTTATGG+TGG | + | chr6_3:95237763-95237782 | Msa0966650:intron | 45.0% |
| AGGCTCTGTGAAAGTCGAAA+TGG | - | chr6_3:95237958-95237977 | None:intergenic | 45.0% | |
| AACATCCTCTGATGCAGAGA+GGG | + | chr6_3:95238739-95238758 | Msa0966650:intron | 45.0% | |
| TCAGCTGAGTAGATATGAGG+AGG | + | chr6_3:95239056-95239075 | Msa0966650:intron | 45.0% | |
| TCACCTAGGAAAGCTTGAAG+AGG | + | chr6_3:95239233-95239252 | Msa0966650:intron | 45.0% | |
| CACCTAGGAAAGCTTGAAGA+GGG | + | chr6_3:95239234-95239253 | Msa0966650:intron | 45.0% | |
| TGAAGAGGGTCTTTCTTTGC+TGG | + | chr6_3:95239248-95239267 | Msa0966650:intron | 45.0% | |
| TCTCTACACGAGAGAAGAAG+TGG | + | chr6_3:95239646-95239665 | Msa0966650:CDS | 45.0% | |
| ATTTGCAGAACCTGTTGACG+GGG | + | chr6_3:95239674-95239693 | Msa0966650:CDS | 45.0% | |
| ! | TCAATTGATTCCCCGTCAAC+AGG | - | chr6_3:95239687-95239706 | None:intergenic | 45.0% |
| CTTGAGAGGGATATGAACCA+CGG | + | chr6_3:95239759-95239778 | Msa0966650:CDS | 45.0% | |
| TGAACCACGGAGAGGTTATT+TGG | + | chr6_3:95239772-95239791 | Msa0966650:CDS | 45.0% | |
| TGTTCCAAATAACCTCTCCG+TGG | - | chr6_3:95239779-95239798 | None:intergenic | 45.0% | |
| GCTGTGATTCCCAATCACAA+CGG | - | chr6_3:95239805-95239824 | None:intergenic | 45.0% | |
| CACAACCATGCAACAAGAGT+CGG | + | chr6_3:95239929-95239948 | Msa0966650:intron | 45.0% | |
| TTCAGTGAGTTCACCAACAG+TGG | - | chr6_3:95240119-95240138 | None:intergenic | 45.0% | |
| GTGAACTCACTGAAGCAATG+TGG | + | chr6_3:95240125-95240144 | Msa0966650:intron | 45.0% | |
| TGAAGCAATGTGGCCAATAG+AGG | + | chr6_3:95240135-95240154 | Msa0966650:intron | 45.0% | |
| TAGAGTTTGTGTACTGTGGC+AGG | + | chr6_3:95240611-95240630 | Msa0966650:intron | 45.0% | |
| ! | GCAGGTTAATCATGCCCTTT+TGG | + | chr6_3:95240629-95240648 | Msa0966650:intron | 45.0% |
| AGGCTGAATAGGTGACTGTA+AGG | - | chr6_3:95240903-95240922 | None:intergenic | 45.0% | |
| TTATCTCACCGGGATTCAAC+TGG | - | chr6_3:95240986-95241005 | None:intergenic | 45.0% | |
| GTTGAATCCCGGTGAGATAA+TGG | + | chr6_3:95240986-95241005 | Msa0966650:intron | 45.0% | |
| TTATGGCAGTAAGGGGAATG+AGG | + | chr6_3:95241174-95241193 | Msa0966650:intron | 45.0% | |
| CTCACAACCTATGTCCCTTA+AGG | + | chr6_3:95241246-95241265 | Msa0966650:CDS | 45.0% | |
| !!! | TTTATAAAATTATTTGAAAT+TGG | + | chr6_3:95238362-95238381 | Msa0966650:intron | 5.0% |
| !! | AAATAGTGGACCTGCACCAG+AGG | + | chr6_3:95237176-95237195 | Msa0966650:intron | 50.0% |
| !! | AATAGTGGACCTGCACCAGA+GGG | + | chr6_3:95237177-95237196 | Msa0966650:intron | 50.0% |
| ! | TTGGTAATTCCCTCTGGTGC+AGG | - | chr6_3:95237189-95237208 | None:intergenic | 50.0% |
| CAGGTCGTGAGCAGAACATT+TGG | - | chr6_3:95237267-95237286 | None:intergenic | 50.0% | |
| CAAATGTTCTGCTCACGACC+TGG | + | chr6_3:95237265-95237284 | Msa0966650:intron | 50.0% | |
| CCGGTGGATATCACCATAGT+AGG | + | chr6_3:95237307-95237326 | Msa0966650:intron | 50.0% | |
| CTTTGTTCCTGCAACAAGGG+CGG | + | chr6_3:95237479-95237498 | Msa0966650:CDS | 50.0% | |
| ! | ATGTTTTCCGCCCTTGTTGC+AGG | - | chr6_3:95237489-95237508 | None:intergenic | 50.0% |
| ! | TGCAAACATGGCTCTGCCTT+AGG | + | chr6_3:95238339-95238358 | Msa0966650:intron | 50.0% |
| AATCAGTTAGGAAGAGGGGG+TGG | - | chr6_3:95238651-95238670 | None:intergenic | 50.0% | |
| GAACATCCTCTGATGCAGAG+AGG | + | chr6_3:95238738-95238757 | Msa0966650:intron | 50.0% | |
| ACTTGGCAACCAGCAGCAAT+TGG | - | chr6_3:95239132-95239151 | None:intergenic | 50.0% | |
| GACCCTCTTCAAGCTTTCCT+AGG | - | chr6_3:95239239-95239258 | None:intergenic | 50.0% | |
| TGGAACACTGCCGTTGTGAT+TGG | + | chr6_3:95239792-95239811 | Msa0966650:CDS | 50.0% | |
| GGAACACTGCCGTTGTGATT+GGG | + | chr6_3:95239793-95239812 | Msa0966650:CDS | 50.0% | |
| AGTCTCCGACTCTTGTTGCA+TGG | - | chr6_3:95239937-95239956 | None:intergenic | 50.0% | |
| ! | TTCAACCCTTGTGCCACTGT+TGG | + | chr6_3:95240103-95240122 | Msa0966650:intron | 50.0% |
| GTTCACCAACAGTGGCACAA+GGG | - | chr6_3:95240111-95240130 | None:intergenic | 50.0% | |
| AGTTCACCAACAGTGGCACA+AGG | - | chr6_3:95240112-95240131 | None:intergenic | 50.0% | |
| !! | AAAGATGGGCTGAGAGACAC+AGG | - | chr6_3:95240786-95240805 | None:intergenic | 50.0% |
| ACTTGTGATCCTACTGCTCG+CGG | + | chr6_3:95241280-95241299 | Msa0966650:CDS | 50.0% | |
| GAAATAACACCGCGAGCAGT+AGG | - | chr6_3:95241292-95241311 | None:intergenic | 50.0% | |
| CTCTAAGTATGGAGAAGGGC+AGG | + | chr6_3:95241348-95241367 | Msa0966650:CDS | 50.0% | |
| AAGGGCAGGAGTTCACATCT+TGG | + | chr6_3:95241362-95241381 | Msa0966650:CDS | 50.0% | |
| AGGGCAGGAGTTCACATCTT+GGG | + | chr6_3:95241363-95241382 | Msa0966650:CDS | 50.0% | |
| CAATGCCCTCTCTGCATCAG+AGG | - | chr6_3:95238747-95238766 | None:intergenic | 55.0% | |
| ! | CTCTGATGCAGAGAGGGCAT+TGG | + | chr6_3:95238745-95238764 | Msa0966650:intron | 55.0% |
| GAGGGATATGAACCACGGAG+AGG | + | chr6_3:95239764-95239783 | Msa0966650:CDS | 55.0% | |
| ! | CTGCTGCTGAGTGGGTTCAT+GGG | + | chr6_3:95240736-95240755 | Msa0966650:CDS | 55.0% |
| AGCAAGCGCAGAGGCTGAAT+AGG | - | chr6_3:95240914-95240933 | None:intergenic | 55.0% | |
| TATTCAGCCTCTGCGCTTGC+TGG | + | chr6_3:95240913-95240932 | Msa0966650:CDS | 55.0% | |
| AGCAGCTGCTGCTGCTGAGT+GGG | + | chr6_3:95240728-95240747 | Msa0966650:CDS | 60.0% | |
| ! | GCTGCTGCTGAGTGGGTTCA+TGG | + | chr6_3:95240735-95240754 | Msa0966650:CDS | 60.0% |
| CAGCAGCTGCTGCTGCTGAG+TGG | + | chr6_3:95240727-95240746 | Msa0966650:CDS | 65.0% | |
| GGAGGAACCAGCAAGCGCAG+AGG | - | chr6_3:95240923-95240942 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 95236029 | 95241581 | 95236029 | ID=Msa0966650;Name=Msa0966650 |
| chr6_3 | mRNA | 95236029 | 95241581 | 95236029 | ID=Msa0966650-mRNA-1;Parent=Msa0966650;Name=Msa0966650-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0.5|0.71|0.85|0.83|0.85|7|176|292 |
| chr6_3 | exon | 95236029 | 95236035 | 95236029 | ID=Msa0966650-mRNA-1:exon:17644;Parent=Msa0966650-mRNA-1 |
| chr6_3 | exon | 95237477 | 95237546 | 95237477 | ID=Msa0966650-mRNA-1:exon:17645;Parent=Msa0966650-mRNA-1 |
| chr6_3 | exon | 95238240 | 95238303 | 95238240 | ID=Msa0966650-mRNA-1:exon:17646;Parent=Msa0966650-mRNA-1 |
| chr6_3 | exon | 95239621 | 95239848 | 95239621 | ID=Msa0966650-mRNA-1:exon:17647;Parent=Msa0966650-mRNA-1 |
| chr6_3 | exon | 95240633 | 95240830 | 95240633 | ID=Msa0966650-mRNA-1:exon:17648;Parent=Msa0966650-mRNA-1 |
| chr6_3 | exon | 95240908 | 95240996 | 95240908 | ID=Msa0966650-mRNA-1:exon:17649;Parent=Msa0966650-mRNA-1 |
| chr6_3 | exon | 95241183 | 95241581 | 95241183 | ID=Msa0966650-mRNA-1:exon:17650;Parent=Msa0966650-mRNA-1 |
| chr6_3 | CDS | 95236029 | 95236035 | 95236029 | ID=Msa0966650-mRNA-1:cds;Parent=Msa0966650-mRNA-1 |
| chr6_3 | CDS | 95237477 | 95237546 | 95237477 | ID=Msa0966650-mRNA-1:cds;Parent=Msa0966650-mRNA-1 |
| chr6_3 | CDS | 95238240 | 95238303 | 95238240 | ID=Msa0966650-mRNA-1:cds;Parent=Msa0966650-mRNA-1 |
| chr6_3 | CDS | 95239621 | 95239848 | 95239621 | ID=Msa0966650-mRNA-1:cds;Parent=Msa0966650-mRNA-1 |
| chr6_3 | CDS | 95240633 | 95240830 | 95240633 | ID=Msa0966650-mRNA-1:cds;Parent=Msa0966650-mRNA-1 |
| chr6_3 | CDS | 95240908 | 95240996 | 95240908 | ID=Msa0966650-mRNA-1:cds;Parent=Msa0966650-mRNA-1 |
| chr6_3 | CDS | 95241183 | 95241405 | 95241183 | ID=Msa0966650-mRNA-1:cds;Parent=Msa0966650-mRNA-1 |
| chr6_3 | three_prime_UTR | 95241406 | 95241581 | 95241406 | ID=Msa0966650-mRNA-1:three_prime_utr;Parent=Msa0966650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
