AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0973090


Find 306 sgRNAs with CRISPR-Local

Find 771 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-GE

Chromosome Type Strat End Strand Name
chr6_4 gene 5418678 5433405 5418678 ID=Msa0973090;Name=Msa0973090
chr6_4 mRNA 5418678 5433405 5418678 ID=Msa0973090-mRNA-1;Parent=Msa0973090;Name=Msa0973090-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.90|0.86|0.95|1|1|23|369|1446
chr6_4 exon 5418678 5419193 5418678 ID=Msa0973090-mRNA-1:exon:2341;Parent=Msa0973090-mRNA-1
chr6_4 exon 5419889 5420000 5419889 ID=Msa0973090-mRNA-1:exon:2340;Parent=Msa0973090-mRNA-1
chr6_4 exon 5420160 5420323 5420160 ID=Msa0973090-mRNA-1:exon:2339;Parent=Msa0973090-mRNA-1
chr6_4 exon 5420432 5420584 5420432 ID=Msa0973090-mRNA-1:exon:2338;Parent=Msa0973090-mRNA-1
chr6_4 exon 5420671 5420809 5420671 ID=Msa0973090-mRNA-1:exon:2337;Parent=Msa0973090-mRNA-1
chr6_4 exon 5420930 5421027 5420930 ID=Msa0973090-mRNA-1:exon:2336;Parent=Msa0973090-mRNA-1
chr6_4 exon 5421114 5421725 5421114 ID=Msa0973090-mRNA-1:exon:2335;Parent=Msa0973090-mRNA-1
chr6_4 exon 5421918 5422012 5421918 ID=Msa0973090-mRNA-1:exon:2334;Parent=Msa0973090-mRNA-1
chr6_4 exon 5422148 5422792 5422148 ID=Msa0973090-mRNA-1:exon:2333;Parent=Msa0973090-mRNA-1
chr6_4 exon 5422914 5423168 5422914 ID=Msa0973090-mRNA-1:exon:2332;Parent=Msa0973090-mRNA-1
chr6_4 exon 5423280 5423407 5423280 ID=Msa0973090-mRNA-1:exon:2331;Parent=Msa0973090-mRNA-1
chr6_4 exon 5423535 5423689 5423535 ID=Msa0973090-mRNA-1:exon:2330;Parent=Msa0973090-mRNA-1
chr6_4 exon 5423782 5423969 5423782 ID=Msa0973090-mRNA-1:exon:2329;Parent=Msa0973090-mRNA-1
chr6_4 exon 5424109 5424138 5424109 ID=Msa0973090-mRNA-1:exon:2328;Parent=Msa0973090-mRNA-1
chr6_4 exon 5424231 5424306 5424231 ID=Msa0973090-mRNA-1:exon:2327;Parent=Msa0973090-mRNA-1
chr6_4 exon 5425012 5425151 5425012 ID=Msa0973090-mRNA-1:exon:2326;Parent=Msa0973090-mRNA-1
chr6_4 exon 5425824 5426097 5425824 ID=Msa0973090-mRNA-1:exon:2325;Parent=Msa0973090-mRNA-1
chr6_4 exon 5426178 5426351 5426178 ID=Msa0973090-mRNA-1:exon:2324;Parent=Msa0973090-mRNA-1
chr6_4 exon 5426460 5426558 5426460 ID=Msa0973090-mRNA-1:exon:2323;Parent=Msa0973090-mRNA-1
chr6_4 exon 5426654 5426840 5426654 ID=Msa0973090-mRNA-1:exon:2322;Parent=Msa0973090-mRNA-1
chr6_4 exon 5426946 5427140 5426946 ID=Msa0973090-mRNA-1:exon:2321;Parent=Msa0973090-mRNA-1
chr6_4 exon 5427766 5427847 5427766 ID=Msa0973090-mRNA-1:exon:2320;Parent=Msa0973090-mRNA-1
chr6_4 exon 5433213 5433405 5433213 ID=Msa0973090-mRNA-1:exon:2319;Parent=Msa0973090-mRNA-1
chr6_4 CDS 5433213 5433405 5433213 ID=Msa0973090-mRNA-1:cds;Parent=Msa0973090-mRNA-1
chr6_4 CDS 5427766 5427847 5427766 ID=Msa0973090-mRNA-1:cds;Parent=Msa0973090-mRNA-1
chr6_4 CDS 5426946 5427140 5426946 ID=Msa0973090-mRNA-1:cds;Parent=Msa0973090-mRNA-1
chr6_4 CDS 5426654 5426840 5426654 ID=Msa0973090-mRNA-1:cds;Parent=Msa0973090-mRNA-1
chr6_4 CDS 5426460 5426558 5426460 ID=Msa0973090-mRNA-1:cds;Parent=Msa0973090-mRNA-1
chr6_4 CDS 5426178 5426351 5426178 ID=Msa0973090-mRNA-1:cds;Parent=Msa0973090-mRNA-1
chr6_4 CDS 5425824 5426097 5425824 ID=Msa0973090-mRNA-1:cds;Parent=Msa0973090-mRNA-1
chr6_4 CDS 5425012 5425151 5425012 ID=Msa0973090-mRNA-1:cds;Parent=Msa0973090-mRNA-1
chr6_4 CDS 5424231 5424306 5424231 ID=Msa0973090-mRNA-1:cds;Parent=Msa0973090-mRNA-1
chr6_4 CDS 5424109 5424138 5424109 ID=Msa0973090-mRNA-1:cds;Parent=Msa0973090-mRNA-1
chr6_4 CDS 5423782 5423969 5423782 ID=Msa0973090-mRNA-1:cds;Parent=Msa0973090-mRNA-1
chr6_4 CDS 5423535 5423689 5423535 ID=Msa0973090-mRNA-1:cds;Parent=Msa0973090-mRNA-1
chr6_4 CDS 5423280 5423407 5423280 ID=Msa0973090-mRNA-1:cds;Parent=Msa0973090-mRNA-1
chr6_4 CDS 5422914 5423168 5422914 ID=Msa0973090-mRNA-1:cds;Parent=Msa0973090-mRNA-1
chr6_4 CDS 5422148 5422792 5422148 ID=Msa0973090-mRNA-1:cds;Parent=Msa0973090-mRNA-1
chr6_4 CDS 5421918 5422012 5421918 ID=Msa0973090-mRNA-1:cds;Parent=Msa0973090-mRNA-1
chr6_4 CDS 5421114 5421725 5421114 ID=Msa0973090-mRNA-1:cds;Parent=Msa0973090-mRNA-1
chr6_4 CDS 5420930 5421027 5420930 ID=Msa0973090-mRNA-1:cds;Parent=Msa0973090-mRNA-1
chr6_4 CDS 5420671 5420809 5420671 ID=Msa0973090-mRNA-1:cds;Parent=Msa0973090-mRNA-1
chr6_4 CDS 5420432 5420584 5420432 ID=Msa0973090-mRNA-1:cds;Parent=Msa0973090-mRNA-1
chr6_4 CDS 5420160 5420323 5420160 ID=Msa0973090-mRNA-1:cds;Parent=Msa0973090-mRNA-1
chr6_4 CDS 5419889 5420000 5419889 ID=Msa0973090-mRNA-1:cds;Parent=Msa0973090-mRNA-1
chr6_4 CDS 5419047 5419193 5419047 ID=Msa0973090-mRNA-1:cds;Parent=Msa0973090-mRNA-1
chr6_4 three_prime_UTR 5418678 5419046 5418678 ID=Msa0973090-mRNA-1:three_prime_utr;Parent=Msa0973090-mRNA-1
Gene Sequence

>Msa0973090

ATGGTTGTGTTAGACATCGACAACCAACATAAAACTTTGTGGAATCTATATGATATGGTTCAAATACGAAATAGTGTGAATGTTGGACCGTTGTCTGGAAGCAACGCGTTGTATAGCTCGGGTACATTGTCAAATGAGCAAGGGTTGTTGCATCGTCGTCTGGATGCGGTGAAAAATAAGATGACCCCACTTAGTATGAAGAGGGCTAGAGATGATATTTACTCTGCTTCTGCTTCTCAATTCAAACGACCCTTTGCTTCATCACGTGGTGATTCATATGGTCAAGGCCCCGGAGGTGGTGGTGGCGGAGGTGGAGTTAACGGAGGAGGAGGTGGGGGAGCAACTACCTCCCAAAAATTGACAACCAATGATGCTTTATCCTATTTGAAGGAAGTGAAAGACATGTTTCAGGATCAAAAAGAAAAATATGACATGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAAAAGACTGACACTACTGGTGTCATAGCAAGGGTTAAGGAACTATTCAAAGGTCACAACCATTTGATTTTTGGATTTAACACTTTCCTGCCAAAGGGATATGAGATAACACTTGATGAGGATGAGGACGAAGCTCCTCCGAAGAAAACGGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGTTTCCAAAATGATGAACATGTTTACAAATCATTTTTGGACATTTTGAATATGTATCGCAAAGAGCACAAGACCATCACTGAGGTTTATAGTGAGGTTGCTACCCTTTTTAAGTCGCATGGAGATTTGCTCGATGAGTTCACCAGATTCTTACCAGATAATTCTTCAGCACCTTCCACACAGCATGCTCCATTTGGTCGAAATTCAATGCAGCGCCTCAATGAGCGGGGTTCTATGGCACCCGGGATGCGGCAAATGCAAGTAGATAAGCAACGATATCGGCGAGACCGATTTTCTTCTCATGATCGTGATATGAGTGTTGAACGTCCTGATCTGGATGATGACAAAACAATGATGAACTTTCACAAAGAGCAGAGGAAGCGTGAGAGCAGGGATAGAAGGGTGCGCGATCACGATGATAGAGAACATGATCTTGATAACAGCAGGGATTTGCACTCACAACGCTTTCCTGACAAAAAGAAATCTGTTAAGAAGACTGAAGCTTATGACTTTGCTGCTCATGATGATAAAGATGGAATGAAGCCAGTCATGTATAGTCAAGCAATCAGTTTCTGCGATAAAGTTAAGGAGAAGTTGAGCAGCGCTGAGGACTACCAAACATTCTTGAAGTGCCTTAATATTTTTGGCAACGGAATTATAAAAAAGAATGATTTACAAAATTTGGTGACCGATTTGCTTGGAAAGCATTCTGATCTAATGAGCGAATTCAATGATTTCTTAGAGCGTTGTGAAAATATTGACGGGTTCCTTGCTGGTGTCATGAGTAAAAAGCCACTTGCTGCTGATGGTCATTTATCACGATCATCCAAGTTGGAGGACAGAGAACATAGGCGTGAGACGGATGGAGGTAAAGAGAAGGAAAGATACAAGGAGAAGTACATGGGAAAATCCATTCAAGAACTTGACCTTAGCGACTGCAAACGTTGTTCTCCGAGCTACCGACTTCTACCGGCCGATTATCCAATTCCTACTGCTAGTCAGCGATCTGAGCTTGGTGCGCAAGTACTGAATGATCACTGGGTATCTGTGACTTCCGGAAGCGAGGATTACTCTTTCAAACATATGCGCAGGAATCAATACGAAGAAAGCTTGTTCAGATGTGAAGATGACAGGTTTGAGCTGGACATGTTATTAGAGTCTGTAAGTTCCGCTGCTAAACGAGCTGACGAGTTGTACAACAGCATTGTTGAAAATAAGATTAGTGTGGAGAGTCTAAGCCGCATTGAAGATCACTTCACTGTTCTAAATCTAAGGTGCATTGAACGCCTATATGGTGACCATGGTCTTGATGTCTTAGACATACTGCGTAAGAACCCAACTCATGCTCTGCCTGTAATATTGACTCGATTGAAGCAGAAACAAGAGGAGTGGAATAGGTGTCGTTCAGATTTCAATAAAGTTTGGGCTGACATTTATTCTAAAAATCACTACAAATCACTTGATCATCGTAGCTTCTATTTCAAGCAACAAGATTCGAAGAACTTGAGCACAAAATCTTTGGTGACTGAGATCAAAGAAATTAAAGAGAAGCAGCAGAAAGAGGATGACATCGTTCAGACTATTGCTGCAGGAGCAAAACATCCTCTCATTCCACATTTCGAGTTTGACTTTTCTGATGCTGAAATTCACGAGGACCTGTATAAACTTGTTCGTTATTCATGTGAGGAAGTATTCCAAAGTAAAGAGTTATTCAATAAAATTATGAGGCTCTGGAGTACCTTCTTGGAACCGATGCTTGGTGTAACTTCCCAATCGCATGAGTCGGAAAGGGCTGAGGACAGGAAAGCAGGACACAACGCTCGAAGTTCTGTTGCACCTAACGTAGGAGGTGATGGAAGCCCTAACAGAGAGTCCAATTCAAGGCTACCAAAATCTGACAAGAATGAAGTTGATGGTAGAGTAGGTGAAGTTAAAAATGGTCACCGGACTAGTGTAGCTGCCAATGATAAAGAAAACGGTTCTCTTGGTGGCGAGCTTGTTAGTAGAGATGATCATTTAATGGATAATAAAGGGCAGAAAAGTGTTGAAAGCAGTGATAAAGCCCCTGGATTTGTTAAACAGTTCTCCTCTGATGAACAAGCAGCGAGAAACTCTGCATCTGTCACAATTAGAGGCGAAAGCAGTGTGCATATGTCCCCAGGCCGCGTACTTACTCCAACCCGACCTACTGATGCTGATGTCTCTATTGCTGTAGTCATAGCCAAGTCTCCGAGTGCTAATGTACCTTTGGTGGAGGGCGTTGCCGCTCCACCTCCAGTACCAGTGGCCAATGGCGTGTTAGTTGAGAACAGTAAAGTTAAAAGCAATGAAGAATCTTCTGTGCCTTGCAAAGTTGAAAAAGAAGAGGGTGAGTTATCCCCGAATGCTGACTCTGAGGAGGATAACTTTGTTGCCTATGGAGATTCAAATGCACAGTCAAACCACAATGACGATAGAAGGAAATACGAGTCTAGAAATGGGGAGGACGAGCACCGTCCAGAGGCTGGAGGTGATAATGATGCAGATGCTGATGACGAAGACAGCGAAAATGTTTCTGAAGCTGGTGAAGATGTGTCAGGAAGTGAGTCTGCTGGTGATGAATGCTCCCGGGAAGATCATGAGGAGGAAGATATGGAACATGATGATGTTGATGGTAAAGCCGAGAGTGAAGGTGAAGCAGAGGGGATGTGTGATGCTGATGCACAAACTGGAGTAGATGGCTCATCTTTACCGTTATCAGAGAGGTTTCTGTCAACTGTGAAACCTCTCACAAAGCATGTATCTGCAGTTTCATTTGTTGAAGATGTGAAGGATTCAAGGGTGTTTTACGGAAATGATGATTTCTTTGTTCTCTTTAGGCTTCATCAAATTCTTTATGAAAGGATCTTATCTGCAAAAGAAAATTCAACAAGCGCTGAAATGAAATGGAAAACAAAAGATTCTAGTTCTACAGATCCTTACGCAAGATTTATGGATGCATTGTATAATTTGCTCGATGGATCCGCCGAGAATGCCAAGTTTGAAGATGAATGTCGAGCAATTCTTGGAAACCAGTCTTATGTGCTATTCACATTGGACAAGTTAATATATAAATTAATCAGACAGCTTCAAACTGTTGCAACCGATGAGGAAGACGCTAAGCTTCTCCAATTATACGAGTATGAAAAGTCTCGGAAACCTGGGAAATTAAATGATTCAGTATATCATTCAAATGCACATGTTATCCTTCATGAGGAGAACATATACCGGTTTCAATCTTCTTCTAGTCCTTCTCGGCTCTCGATCCAGCTCATGGACAATATGAATGAAAAGCCCGAGATTGCTGCTGTTGCTGTTGATCCAGATTTTTCATTTTATCTGCACAATGATTTTCTGTCTGTCCTCCCTGGCAAAAAGGAGCCTCACGGCATTTTACTGGAAAGAAACAAACCGAAATATGGGGACTTAGATGAGCTTTCTGCAATTTGTGCTGTAATGGAAGATGTCAAAGTAGTTAATGGATTGGAATGCAAGATATCTTGCAACTCATCCAAGATTTCTTATGTTCTCGACACACAAGATTTTTTCTTCCGACCAAGAAGGAAAAGACGAACACCATCATCATCATCAAGTACATCAGCTTCTCGGTCTCGCAGGGAAAGAGAGGAAAGATTCCGCAAATTGATGGCGTCCTCCACCTAA

Protein sequence

>Msa0973090

MVVLDIDNQHKTLWNLYDMVQIRNSVNVGPLSGSNALYSSGTLSNEQGLLHRRLDAVKNKMTPLSMKRARDDIYSASASQFKRPFASSRGDSYGQGPGGGGGGGGVNGGGGGGATTSQKLTTNDALSYLKEVKDMFQDQKEKYDMFLEVMKDFKAQKTDTTGVIARVKELFKGHNHLIFGFNTFLPKGYEITLDEDEDEAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKTITEVYSEVATLFKSHGDLLDEFTRFLPDNSSAPSTQHAPFGRNSMQRLNERGSMAPGMRQMQVDKQRYRRDRFSSHDRDMSVERPDLDDDKTMMNFHKEQRKRESRDRRVRDHDDREHDLDNSRDLHSQRFPDKKKSVKKTEAYDFAAHDDKDGMKPVMYSQAISFCDKVKEKLSSAEDYQTFLKCLNIFGNGIIKKNDLQNLVTDLLGKHSDLMSEFNDFLERCENIDGFLAGVMSKKPLAADGHLSRSSKLEDREHRRETDGGKEKERYKEKYMGKSIQELDLSDCKRCSPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRADELYNSIVENKISVESLSRIEDHFTVLNLRCIERLYGDHGLDVLDILRKNPTHALPVILTRLKQKQEEWNRCRSDFNKVWADIYSKNHYKSLDHRSFYFKQQDSKNLSTKSLVTEIKEIKEKQQKEDDIVQTIAAGAKHPLIPHFEFDFSDAEIHEDLYKLVRYSCEEVFQSKELFNKIMRLWSTFLEPMLGVTSQSHESERAEDRKAGHNARSSVAPNVGGDGSPNRESNSRLPKSDKNEVDGRVGEVKNGHRTSVAANDKENGSLGGELVSRDDHLMDNKGQKSVESSDKAPGFVKQFSSDEQAARNSASVTIRGESSVHMSPGRVLTPTRPTDADVSIAVVIAKSPSANVPLVEGVAAPPPVPVANGVLVENSKVKSNEESSVPCKVEKEEGELSPNADSEEDNFVAYGDSNAQSNHNDDRRKYESRNGEDEHRPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECSREDHEEEDMEHDDVDGKAESEGEAEGMCDADAQTGVDGSSLPLSERFLSTVKPLTKHVSAVSFVEDVKDSRVFYGNDDFFVLFRLHQILYERILSAKENSTSAEMKWKTKDSSSTDPYARFMDALYNLLDGSAENAKFEDECRAILGNQSYVLFTLDKLIYKLIRQLQTVATDEEDAKLLQLYEYEKSRKPGKLNDSVYHSNAHVILHEENIYRFQSSSSPSRLSIQLMDNMNEKPEIAAVAVDPDFSFYLHNDFLSVLPGKKEPHGILLERNKPKYGDLDELSAICAVMEDVKVVNGLECKISCNSSKISYVLDTQDFFFRPRRKRRTPSSSSSTSASRSRREREERFRKLMASST*