Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116970 | XP_013449696.1 | 100.000 | 410 | 0 | 0 | 1 | 410 | 1 | 410 | 0.0 | 855 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116970 | sp|Q9M8J9|BPM2_ARATH | 72.772 | 404 | 110 | 0 | 7 | 410 | 2 | 405 | 0.0 | 629 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116970 | A0A072U1Y3 | 100.000 | 410 | 0 | 0 | 1 | 410 | 1 | 410 | 0.0 | 855 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094710 | Msa1116970 | 0.818827 | 1.599575e-52 | -8.615850e-47 |
| Msa0641220 | Msa1116970 | 0.803522 | 3.348665e-49 | -8.615850e-47 |
| Msa0661630 | Msa1116970 | 0.813683 | 2.260296e-51 | -8.615850e-47 |
| Msa0782960 | Msa1116970 | 0.801876 | 7.320942e-49 | -8.615850e-47 |
| Msa0232090 | Msa1116970 | 0.803627 | 3.185597e-49 | -8.615850e-47 |
| Msa0366130 | Msa1116970 | 0.838461 | 2.837025e-57 | -8.615850e-47 |
| Msa0436060 | Msa1116970 | 0.813657 | 2.290800e-51 | -8.615850e-47 |
| Msa1011250 | Msa1116970 | 0.820186 | 7.834602e-53 | -8.615850e-47 |
| Msa0254260 | Msa1116970 | 0.818453 | 1.944795e-52 | -8.615850e-47 |
| Msa0300840 | Msa1116970 | 0.801764 | 7.719374e-49 | -8.615850e-47 |
| Msa0332390 | Msa1116970 | 0.828768 | 7.482049e-55 | -8.615850e-47 |
| Msa1116970 | Msa1124460 | -0.802768 | 4.796817e-49 | -8.615850e-47 |
| Msa1116970 | Msa1136910 | 0.804163 | 2.464378e-49 | -8.615850e-47 |
| Msa1116970 | Msa1208990 | 0.819614 | 1.058682e-52 | -8.615850e-47 |
| Msa1116970 | Msa1328240 | 0.806136 | 9.525735e-50 | -8.615850e-47 |
| Msa1116970 | Msa1408110 | 0.835550 | 1.571891e-56 | -8.615850e-47 |
| Msa0537950 | Msa1116970 | 0.830118 | 3.515569e-55 | -8.615850e-47 |
| Msa0538190 | Msa1116970 | 0.838111 | 3.492108e-57 | -8.615850e-47 |
| Msa0559650 | Msa1116970 | -0.804598 | 2.000635e-49 | -8.615850e-47 |
| Msa0588620 | Msa1116970 | 0.804118 | 2.518499e-49 | -8.615850e-47 |
| Msa0591650 | Msa1116970 | 0.813288 | 2.761327e-51 | -8.615850e-47 |
| Msa0870490 | Msa1116970 | 0.812991 | 3.208739e-51 | -8.615850e-47 |
| Msa0881040 | Msa1116970 | 0.805234 | 1.472625e-49 | -8.615850e-47 |
| Msa0936190 | Msa1116970 | 0.809190 | 2.138946e-50 | -8.615850e-47 |
| Msa0973090 | Msa1116970 | 0.815563 | 8.672664e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116970 | MtrunA17_Chr7g0259501 | 100.000 | 410 | 0 | 0 | 1 | 410 | 1 | 410 | 0.0 | 855 |
| Msa1116970 | MtrunA17_Chr1g0185861 | 86.957 | 414 | 50 | 1 | 1 | 410 | 1 | 414 | 0.0 | 726 |
| Msa1116970 | MtrunA17_Chr5g0440341 | 58.312 | 391 | 146 | 6 | 29 | 409 | 23 | 406 | 7.98e-161 | 458 |
| Msa1116970 | MtrunA17_Chr7g0254001 | 57.702 | 383 | 154 | 4 | 32 | 409 | 13 | 392 | 1.03e-148 | 428 |
| Msa1116970 | MtrunA17_Chr4g0002921 | 60.335 | 179 | 71 | 0 | 35 | 213 | 23 | 201 | 2.43e-75 | 238 |
| Msa1116970 | MtrunA17_Chr3g0112351 | 56.989 | 93 | 40 | 0 | 258 | 350 | 6 | 98 | 9.98e-31 | 114 |
| Msa1116970 | MtrunA17_Chr1g0205751 | 31.288 | 163 | 92 | 3 | 187 | 344 | 517 | 664 | 5.39e-17 | 83.2 |
| Msa1116970 | MtrunA17_Chr5g0394261 | 31.902 | 163 | 91 | 3 | 187 | 344 | 514 | 661 | 7.58e-17 | 82.8 |
| Msa1116970 | MtrunA17_Chr7g0259851 | 27.389 | 157 | 97 | 3 | 189 | 344 | 511 | 651 | 1.59e-14 | 75.5 |
| Msa1116970 | MtrunA17_Chr3g0125321 | 29.012 | 162 | 98 | 4 | 220 | 379 | 97 | 243 | 5.51e-13 | 68.6 |
| Msa1116970 | MtrunA17_Chr1g0159831 | 24.233 | 326 | 199 | 9 | 31 | 344 | 4 | 293 | 1.03e-11 | 65.9 |
| Msa1116970 | MtrunA17_Chr3g0103031 | 27.815 | 151 | 94 | 3 | 197 | 345 | 155 | 292 | 1.31e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116970 | AT3G06190.1 | 72.772 | 404 | 110 | 0 | 7 | 410 | 2 | 405 | 0.0 | 629 |
| Msa1116970 | AT5G19000.1 | 73.067 | 375 | 101 | 0 | 36 | 410 | 32 | 406 | 0.0 | 594 |
| Msa1116970 | AT5G19000.3 | 73.067 | 375 | 101 | 0 | 36 | 410 | 32 | 406 | 0.0 | 594 |
| Msa1116970 | AT5G19000.2 | 66.829 | 410 | 101 | 1 | 36 | 410 | 32 | 441 | 0.0 | 577 |
| Msa1116970 | AT3G06190.5 | 72.832 | 346 | 94 | 0 | 7 | 352 | 2 | 347 | 0.0 | 543 |
| Msa1116970 | AT2G39760.1 | 63.714 | 350 | 127 | 0 | 29 | 378 | 16 | 365 | 2.45e-172 | 488 |
| Msa1116970 | AT2G39760.4 | 64.286 | 322 | 115 | 0 | 29 | 350 | 16 | 337 | 8.48e-159 | 451 |
| Msa1116970 | AT2G39760.3 | 64.286 | 322 | 115 | 0 | 29 | 350 | 16 | 337 | 8.48e-159 | 451 |
| Msa1116970 | AT3G03740.1 | 59.259 | 378 | 143 | 4 | 5 | 378 | 18 | 388 | 1.90e-158 | 455 |
| Msa1116970 | AT2G39760.2 | 64.286 | 322 | 115 | 0 | 29 | 350 | 16 | 337 | 2.05e-158 | 450 |
| Msa1116970 | AT3G43700.1 | 52.506 | 419 | 183 | 7 | 1 | 409 | 1 | 413 | 9.25e-150 | 431 |
| Msa1116970 | AT5G21010.1 | 52.998 | 417 | 175 | 6 | 5 | 409 | 1 | 408 | 3.55e-148 | 427 |
| Msa1116970 | AT3G43700.3 | 55.742 | 357 | 145 | 6 | 1 | 350 | 1 | 351 | 2.32e-138 | 400 |
| Msa1116970 | AT3G43700.2 | 54.972 | 362 | 150 | 6 | 1 | 355 | 1 | 356 | 2.34e-138 | 400 |
| Msa1116970 | AT3G06190.3 | 71.094 | 256 | 74 | 0 | 7 | 262 | 2 | 257 | 9.14e-134 | 386 |
| Msa1116970 | AT3G06190.4 | 71.094 | 256 | 74 | 0 | 7 | 262 | 2 | 257 | 1.60e-133 | 385 |
| Msa1116970 | AT3G06190.2 | 69.231 | 260 | 79 | 1 | 7 | 265 | 2 | 261 | 4.63e-130 | 376 |
| Msa1116970 | AT3G06190.2 | 60.714 | 56 | 22 | 0 | 355 | 410 | 239 | 294 | 1.32e-13 | 71.2 |
| Msa1116970 | AT5G19330.1 | 30.675 | 163 | 93 | 3 | 187 | 344 | 519 | 666 | 2.76e-18 | 87.8 |
| Msa1116970 | AT5G13060.1 | 25.907 | 193 | 125 | 4 | 193 | 384 | 557 | 732 | 2.03e-14 | 75.9 |
| Msa1116970 | AT1G55760.1 | 28.188 | 149 | 96 | 3 | 197 | 345 | 154 | 291 | 7.74e-11 | 63.5 |
Find 138 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAGGGTTTGGTACGATTT+TGG | 0.100646 | 7_3:-65025883 | None:intergenic |
| TGATTTGGGGTATTGATTTA+AGG | 0.129136 | 7_3:-65025974 | None:intergenic |
| TTCGATCGATGCGGGAAATT+AGG | 0.136333 | 7_3:-65026000 | None:intergenic |
| CAGAAAGGCAATCATCTTTA+AGG | 0.151802 | 7_3:-65027400 | None:intergenic |
| AAAACATCTGTTTGAAAGTA+TGG | 0.178691 | 7_3:+65029312 | Msa1116970:three_prime_UTR |
| GGGAGGATGATGATCGTTTA+TGG | 0.184639 | 7_3:+65029159 | Msa1116970:three_prime_UTR |
| TAACGAAATCTGTCAGATTT+TGG | 0.210853 | 7_3:-65025916 | None:intergenic |
| GGGAAATTAGGGTATGATTT+GGG | 0.266773 | 7_3:-65025988 | None:intergenic |
| TTTCGGTTGGTGGGTACGAC+TGG | 0.267781 | 7_3:+65026301 | Msa1116970:CDS |
| GCTCTCACTGTCATTTAAAA+AGG | 0.273499 | 7_3:-65029126 | None:intergenic |
| TCGATCGATGCGGGAAATTA+GGG | 0.285108 | 7_3:-65025999 | None:intergenic |
| TCTAACATTGGTCACCAATT+TGG | 0.290090 | 7_3:+65027494 | Msa1116970:CDS |
| ATTGCAATGGAATATATCTT+TGG | 0.297756 | 7_3:-65027464 | None:intergenic |
| TTTCCAGCAGTTGACCAAAT+TGG | 0.308262 | 7_3:-65027508 | None:intergenic |
| CTTGATGGTAGCGACATAAA+TGG | 0.313292 | 7_3:+65029031 | Msa1116970:CDS |
| TTACTGGGATGAACACAAAA+TGG | 0.317610 | 7_3:+65028026 | Msa1116970:CDS |
| GATTTGGGGTATTGATTTAA+GGG | 0.322743 | 7_3:-65025973 | None:intergenic |
| AGTTGTAGCCACGGTATTAA+TGG | 0.325761 | 7_3:-65028149 | None:intergenic |
| TTTGGTCAACTGCTGGAAAA+TGG | 0.327985 | 7_3:+65027512 | Msa1116970:CDS |
| GTGCGAGCCTTTCACTGTTT+CGG | 0.338988 | 7_3:-65026208 | None:intergenic |
| CCTGACATGCAAGAGCTTAC+TGG | 0.346812 | 7_3:+65028010 | Msa1116970:CDS |
| CTTTCAAAGGGGATCGGGAT+TGG | 0.349830 | 7_3:+65026255 | Msa1116970:CDS |
| CGGGAAATTAGGGTATGATT+TGG | 0.350045 | 7_3:-65025989 | None:intergenic |
| TCCATCAGGGTAGAAATAAA+TGG | 0.352142 | 7_3:-65026325 | None:intergenic |
| GTGGTTTGATTAAGAAATCT+AGG | 0.357627 | 7_3:-65025946 | None:intergenic |
| TTCATTGCGCTTGCGAGTGA+TGG | 0.366715 | 7_3:+65026384 | Msa1116970:CDS |
| TTTCAAAGGGGATCGGGATT+GGG | 0.367398 | 7_3:+65026256 | Msa1116970:CDS |
| GGTGCTGTTACTGTTCTGTT+AGG | 0.368107 | 7_3:+65029251 | Msa1116970:three_prime_UTR |
| GAAGATGAAATTCTAGGGTT+TGG | 0.377945 | 7_3:-65025894 | None:intergenic |
| CCGCGGTATTTCAAGGTATA+AGG | 0.381273 | 7_3:-65026507 | None:intergenic |
| CCAGTAAGCTCTTGCATGTC+AGG | 0.381423 | 7_3:-65028010 | None:intergenic |
| TCCTCAACACTCTTTCCATC+AGG | 0.388296 | 7_3:-65026339 | None:intergenic |
| ATCTGTTCTGACTGAGCTAC+TGG | 0.388739 | 7_3:+65028946 | Msa1116970:CDS |
| TTTCAAGAGTCCTCTCAAAA+TGG | 0.393526 | 7_3:-65026479 | None:intergenic |
| TGAAGTATTTGTTGAAATGA+AGG | 0.395823 | 7_3:-65026025 | None:intergenic |
| TGTCTTCAACTTTAATAGAC+TGG | 0.397130 | 7_3:-65027658 | None:intergenic |
| AAAATGGGCAACAACCTTGA+TGG | 0.400210 | 7_3:+65028042 | Msa1116970:CDS |
| GGAGGATGATGATCGTTTAT+GGG | 0.404449 | 7_3:+65029160 | Msa1116970:three_prime_UTR |
| TTGCAATGGAATATATCTTT+GGG | 0.415668 | 7_3:-65027463 | None:intergenic |
| AAAAGCTGGGCTCTGAAAAC+AGG | 0.418885 | 7_3:-65027611 | None:intergenic |
| AAGATGGTTTCGCGGTTTCT+CGG | 0.425427 | 7_3:-65026125 | None:intergenic |
| CTTTCCCACTCTGATCCAAA+AGG | 0.428484 | 7_3:-65026437 | None:intergenic |
| GGCTAGATTTACTGAGCATT+CGG | 0.429590 | 7_3:+65028976 | Msa1116970:CDS |
| TATAAGCCTGAGCCTCTCTA+AGG | 0.439005 | 7_3:-65028098 | None:intergenic |
| CATCATCCTCCCTCTAACTA+AGG | 0.445110 | 7_3:-65029148 | None:intergenic |
| ACTCGCTTTCAAAGGGGATC+GGG | 0.445344 | 7_3:+65026250 | Msa1116970:CDS |
| CTTTCTGTTAATTGTAGTGT+TGG | 0.448249 | 7_3:+65027416 | Msa1116970:CDS |
| GCCATTTATTTCTACCCTGA+TGG | 0.449168 | 7_3:+65026324 | Msa1116970:CDS |
| GATGAGGAAGATGGCGATGA+TGG | 0.450032 | 7_3:-65026153 | None:intergenic |
| CATACTACCGCGGTATTTCA+AGG | 0.451447 | 7_3:-65026514 | None:intergenic |
| CGACGAAGTTGTCGCCGGTT+CGG | 0.453320 | 7_3:-65026175 | None:intergenic |
| TCGCACCAGTTCAAGATCAC+TGG | 0.462687 | 7_3:+65026225 | Msa1116970:CDS |
| TGATGGATTTGAGTACTTGA+AGG | 0.465111 | 7_3:+65028913 | Msa1116970:CDS |
| TCTTTACAGTGGCTCTCGCA+TGG | 0.469657 | 7_3:+65026092 | Msa1116970:exon |
| TCACCAATTTGGTCAACTGC+TGG | 0.470708 | 7_3:+65027505 | Msa1116970:CDS |
| TGAAGGAATTCGATCGATGC+GGG | 0.472438 | 7_3:-65026008 | None:intergenic |
| CTGACATGCAAGAGCTTACT+GGG | 0.474237 | 7_3:+65028011 | Msa1116970:CDS |
| ACAGTGAGAGCCTTAGTTAG+AGG | 0.476215 | 7_3:+65029138 | Msa1116970:three_prime_UTR |
| AATTGGTGACCAATGTTAGA+AGG | 0.476229 | 7_3:-65027491 | None:intergenic |
| TTCGGTTGGTGGGTACGACT+GGG | 0.480343 | 7_3:+65026302 | Msa1116970:CDS |
| AGCAGCCGCTAGAAGATGTT+GGG | 0.482623 | 7_3:-65028065 | None:intergenic |
| GCCATCTTCCTCATCCGAAC+CGG | 0.485420 | 7_3:+65026161 | Msa1116970:CDS |
| TCATTGCGCTTGCGAGTGAT+GGG | 0.488038 | 7_3:+65026385 | Msa1116970:CDS |
| TTGATGGTAGCGACATAAAT+GGG | 0.492627 | 7_3:+65029032 | Msa1116970:CDS |
| TGAGACAGACTGCTTTCAGC+TGG | 0.493739 | 7_3:-65028201 | None:intergenic |
| CACTGGGTACTCGCTTTCAA+AGG | 0.497134 | 7_3:+65026242 | Msa1116970:CDS |
| ACTGGGTACTCGCTTTCAAA+GGG | 0.502570 | 7_3:+65026243 | Msa1116970:CDS |
| GGCGATGATGGATTTGAAGA+TGG | 0.510513 | 7_3:-65026141 | None:intergenic |
| TACTCGCTTTCAAAGGGGAT+CGG | 0.513011 | 7_3:+65026249 | Msa1116970:CDS |
| CGTGGCTACAACTTTAGCCT+TGG | 0.515788 | 7_3:+65028159 | Msa1116970:CDS |
| GTTATGCCTTAGAGAGGCTC+AGG | 0.515843 | 7_3:+65028092 | Msa1116970:CDS |
| GGGGTATTGATTTAAGGGAA+TGG | 0.516500 | 7_3:-65025968 | None:intergenic |
| AGTTGTCGCCGGTTCGGATG+AGG | 0.516664 | 7_3:-65026169 | None:intergenic |
| AGTAGCTCAGTCAGAACAGA+TGG | 0.522563 | 7_3:-65028944 | None:intergenic |
| GTCTTCAACTTTAATAGACT+GGG | 0.522594 | 7_3:-65027657 | None:intergenic |
| GCAAAGGCTTTAGTTTGAAG+TGG | 0.525605 | 7_3:+65029066 | Msa1116970:exon |
| GCCGGTTCGGATGAGGAAGA+TGG | 0.527058 | 7_3:-65026162 | None:intergenic |
| AGTACCCAGTGATCTTGAAC+TGG | 0.527135 | 7_3:-65026230 | None:intergenic |
| GTATTGATTTAAGGGAATGG+TGG | 0.528429 | 7_3:-65025965 | None:intergenic |
| AGGAATGAAGCAATACTTGA+TGG | 0.534209 | 7_3:+65029016 | Msa1116970:CDS |
| TCAGCTGTGATGCAAACTGA+TGG | 0.535341 | 7_3:+65028896 | Msa1116970:intron |
| CAGCAGCCGCTAGAAGATGT+TGG | 0.535413 | 7_3:-65028066 | None:intergenic |
| CTTTACAGTGGCTCTCGCAT+GGG | 0.537002 | 7_3:+65026093 | Msa1116970:exon |
| TACTGGGATGAACACAAAAT+GGG | 0.538886 | 7_3:+65028027 | Msa1116970:CDS |
| ATGTGAGCTTTGAAGTGGAT+GGG | 0.539335 | 7_3:+65027546 | Msa1116970:CDS |
| TGGTTTGATTAAGAAATCTA+GGG | 0.545134 | 7_3:-65025945 | None:intergenic |
| TGTGTAAATGTAATTTGTGT+TGG | 0.547276 | 7_3:+65029230 | Msa1116970:three_prime_UTR |
| TTTGAGAGGACTCTTGAAAG+TGG | 0.547746 | 7_3:+65026483 | Msa1116970:CDS |
| TAGAAGATGTTGGGCCATCA+AGG | 0.550820 | 7_3:-65028056 | None:intergenic |
| CAGTGAGAGCCTTAGTTAGA+GGG | 0.551817 | 7_3:+65029139 | Msa1116970:three_prime_UTR |
| GAGTGGGAAAGAGAGGCATA+AGG | 0.552695 | 7_3:+65026449 | Msa1116970:CDS |
| TGGGTACTTTGATCTCTCAT+AGG | 0.553110 | 7_3:-65027638 | None:intergenic |
| GGAAATTAGGGTATGATTTG+GGG | 0.557178 | 7_3:-65025987 | None:intergenic |
| CAACTGCTGGAAAATGGTAA+AGG | 0.557886 | 7_3:+65027518 | Msa1116970:CDS |
| TGGATCAGAGTGGGAAAGAG+AGG | 0.559531 | 7_3:+65026442 | Msa1116970:CDS |
| CAACACTACAATTAACAGAA+AGG | 0.560566 | 7_3:-65027415 | None:intergenic |
| TGAAATACCGCGGTAGTATG+TGG | 0.562660 | 7_3:+65026517 | Msa1116970:CDS |
| AACTCTCGATTTCTTTACAG+TGG | 0.563805 | 7_3:+65026081 | Msa1116970:five_prime_UTR |
| CGCACCAGTTCAAGATCACT+GGG | 0.564063 | 7_3:+65026226 | Msa1116970:CDS |
| TTTCCCACTCTGATCCAAAA+GGG | 0.564821 | 7_3:-65026436 | None:intergenic |
| GTTGTGAGGTCACGCACGGA+AGG | 0.565111 | 7_3:+65027440 | Msa1116970:CDS |
| GCAATACCACCTTCTAACAT+TGG | 0.569252 | 7_3:+65027482 | Msa1116970:CDS |
| ATTGTAGTGTTGGTGTTGTG+AGG | 0.569688 | 7_3:+65027426 | Msa1116970:CDS |
| TGGATTTGAAGATGGTTTCG+CGG | 0.577032 | 7_3:-65026133 | None:intergenic |
| GTTAGAAGGTGGTATTGCAA+TGG | 0.578466 | 7_3:-65027477 | None:intergenic |
| TAGCGACATAAATGGGAGGC+GGG | 0.581746 | 7_3:+65029039 | Msa1116970:CDS |
| ACAGTGGTGTTGCTCTGCCA+AGG | 0.585829 | 7_3:-65028176 | None:intergenic |
| ATGGGAGGCGGGTGAAGCAA+AGG | 0.586155 | 7_3:+65029050 | Msa1116970:CDS |
| GTCTATTAAAGTTGAAGACA+TGG | 0.587011 | 7_3:+65027661 | Msa1116970:CDS |
| GTAGCGACATAAATGGGAGG+CGG | 0.587515 | 7_3:+65029038 | Msa1116970:CDS |
| CCTCAACACTCTTTCCATCA+GGG | 0.588059 | 7_3:-65026338 | None:intergenic |
| AAACACAGAAAATGAAATGA+CGG | 0.591047 | 7_3:-65025822 | None:intergenic |
| CGCAATGAAAAGCGACACAT+AGG | 0.595341 | 7_3:-65026370 | None:intergenic |
| TGTGAGCTTTGAAGTGGATG+GGG | 0.599589 | 7_3:+65027547 | Msa1116970:CDS |
| CTGCTTTCAGCTGGAAACAG+TGG | 0.607188 | 7_3:-65028192 | None:intergenic |
| GATGTGAGCTTTGAAGTGGA+TGG | 0.611734 | 7_3:+65027545 | Msa1116970:CDS |
| TGTGTTTCAGGGGTTACAAG+CGG | 0.617806 | 7_3:+65027342 | Msa1116970:intron |
| CAAGGCTAAAGTTGTAGCCA+CGG | 0.622185 | 7_3:-65028158 | None:intergenic |
| AAGTGATGTGAGCTTTGAAG+TGG | 0.629597 | 7_3:+65027541 | Msa1116970:CDS |
| TCGATCACCGAAACAGTGAA+AGG | 0.633614 | 7_3:+65026201 | Msa1116970:CDS |
| GATGTCGACGAAGTTGTCGC+CGG | 0.639395 | 7_3:-65026180 | None:intergenic |
| CCCTGATGGAAAGAGTGTTG+AGG | 0.639733 | 7_3:+65026338 | Msa1116970:CDS |
| CTGATCGTTATGCCTTAGAG+AGG | 0.645940 | 7_3:+65028086 | Msa1116970:CDS |
| TGGTGACCAATGTTAGAAGG+TGG | 0.651217 | 7_3:-65027488 | None:intergenic |
| TGGTGTTGTGAGGTCACGCA+CGG | 0.652634 | 7_3:+65027436 | Msa1116970:CDS |
| ATGAAGGAATTCGATCGATG+CGG | 0.653909 | 7_3:-65026009 | None:intergenic |
| GATTGGGAAATACATAGCGT+CGG | 0.657071 | 7_3:+65026272 | Msa1116970:CDS |
| TGAGAGCCTTAGTTAGAGGG+AGG | 0.659560 | 7_3:+65029142 | Msa1116970:three_prime_UTR |
| GTAGCTCAGTCAGAACAGAT+GGG | 0.683418 | 7_3:-65028943 | None:intergenic |
| CTGGGTACTCGCTTTCAAAG+GGG | 0.684078 | 7_3:+65026244 | Msa1116970:CDS |
| GACTGAGCTACTGGAGTACG+TGG | 0.688714 | 7_3:+65028955 | Msa1116970:CDS |
| CCTTATACCTTGAAATACCG+CGG | 0.699018 | 7_3:+65026507 | Msa1116970:CDS |
| GATGGCCCAACATCTTCTAG+CGG | 0.704220 | 7_3:+65028060 | Msa1116970:CDS |
| GCCACCTCTGAAAATCTCAG+AGG | 0.704264 | 7_3:+65028232 | Msa1116970:CDS |
| ATGGTAGCGACATAAATGGG+AGG | 0.709241 | 7_3:+65029035 | Msa1116970:CDS |
| TATTAAAGTTGAAGACATGG+AGG | 0.710382 | 7_3:+65027664 | Msa1116970:CDS |
| AGATGTCGCCATTAATACCG+TGG | 0.713502 | 7_3:+65028141 | Msa1116970:CDS |
| GAGCTTACCACATACTACCG+CGG | 0.744761 | 7_3:-65026524 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAGATTTCATTTTTATTT+TGG | + | chr7_3:65026568-65026587 | Msa1116970:intron | 10.0% |
| !!! | TCATTTTATCGAATTATTAT+CGG | + | chr7_3:65027049-65027068 | Msa1116970:intron | 15.0% |
| !! | TTAAATAAAACCTTAAAAAC+TGG | - | chr7_3:65027692-65027711 | None:intergenic | 15.0% |
| !! | TTAATATCTTAAATATGTAC+AGG | + | chr7_3:65027720-65027739 | Msa1116970:intron | 15.0% |
| !!! | ACTAATTTAACTTTGAATAA+TGG | - | chr7_3:65028377-65028396 | None:intergenic | 15.0% |
| !!! | CTGAACTATTTTTATTATTT+TGG | + | chr7_3:65028869-65028888 | Msa1116970:intron | 15.0% |
| !!! | GATTTCATTTTTATTTTGGT+CGG | + | chr7_3:65026572-65026591 | Msa1116970:intron | 20.0% |
| !!! | ATGGAATATTAATTTGAGAA+TGG | + | chr7_3:65027175-65027194 | Msa1116970:intron | 20.0% |
| !!! | TTCTTTTTATTGATTTGATG+AGG | + | chr7_3:65027776-65027795 | Msa1116970:intron | 20.0% |
| !! | GTTGTGTAATTATTTACAAA+AGG | - | chr7_3:65027821-65027840 | None:intergenic | 20.0% |
| !! | ATAATTACACAACAACTATT+TGG | + | chr7_3:65027828-65027847 | Msa1116970:intron | 20.0% |
| !! | AAATTAGTAGTAAATGGAAA+AGG | - | chr7_3:65028513-65028532 | None:intergenic | 20.0% |
| !!! | TTTTGGAAGATGAAATTCTA+GGG | - | chr7_3:65025902-65025921 | None:intergenic | 25.0% |
| !!! | ATTTTGGAAGATGAAATTCT+AGG | - | chr7_3:65025903-65025922 | None:intergenic | 25.0% |
| ! | TGGTTTGATTAAGAAATCTA+GGG | - | chr7_3:65025948-65025967 | None:intergenic | 25.0% |
| !! | TGAAGTATTTGTTGAAATGA+AGG | - | chr7_3:65026028-65026047 | None:intergenic | 25.0% |
| ! | TTCAATGTTATCATATGTGT+AGG | - | chr7_3:65027024-65027043 | None:intergenic | 25.0% |
| !! | TATTAATTTGAGAATGGTTG+AGG | + | chr7_3:65027181-65027200 | Msa1116970:intron | 25.0% |
| ! | TATTTGATATCTTGTGTTTC+AGG | + | chr7_3:65027330-65027349 | Msa1116970:intron | 25.0% |
| ! | ATTTGATATCTTGTGTTTCA+GGG | + | chr7_3:65027331-65027350 | Msa1116970:intron | 25.0% |
| ! | TTGCAATGGAATATATCTTT+GGG | - | chr7_3:65027466-65027485 | None:intergenic | 25.0% |
| ! | ATTGCAATGGAATATATCTT+TGG | - | chr7_3:65027467-65027486 | None:intergenic | 25.0% |
| !! | AGTTTTTACTGCTCATAAAT+TGG | + | chr7_3:65027571-65027590 | Msa1116970:CDS | 25.0% |
| ! | TTAATCATAATATCCGAAGA+TGG | + | chr7_3:65027753-65027772 | Msa1116970:intron | 25.0% |
| ! | TCAATAAAAAGAACCATCTT+CGG | - | chr7_3:65027769-65027788 | None:intergenic | 25.0% |
| !!! | TTTTTATTGATTTGATGAGG+AGG | + | chr7_3:65027779-65027798 | Msa1116970:intron | 25.0% |
| ! | ATTTACAAAAGGCAAAACAA+TGG | - | chr7_3:65027810-65027829 | None:intergenic | 25.0% |
| ! | AAGATAAAAGGAACAATGAA+AGG | - | chr7_3:65027949-65027968 | None:intergenic | 25.0% |
| !! | ATTGCTTCATTTTATGTACT+GGG | + | chr7_3:65027979-65027998 | Msa1116970:CDS | 25.0% |
| !! | TAAGCTTTGTATGATTCTTA+TGG | + | chr7_3:65028469-65028488 | Msa1116970:intron | 25.0% |
| ! | ATAAATTTCTAATGGAATCG+TGG | - | chr7_3:65028777-65028796 | None:intergenic | 25.0% |
| ! | GATTCCATTAGAAATTTATC+TGG | + | chr7_3:65028778-65028797 | Msa1116970:intron | 25.0% |
| ! | TCTTGGATGAAGAATAAAAA+AGG | - | chr7_3:65028836-65028855 | None:intergenic | 25.0% |
| ! | TCAGTAGATATAAATGTTCT+TGG | - | chr7_3:65028853-65028872 | None:intergenic | 25.0% |
| !! | TGTGTAAATGTAATTTGTGT+TGG | + | chr7_3:65029230-65029249 | Msa1116970:three_prime_UTR | 25.0% |
| !!! | CTTCGTGTTACTTTTTTAAT+TGG | + | chr7_3:65029286-65029305 | Msa1116970:three_prime_UTR | 25.0% |
| ! | AAAACATCTGTTTGAAAGTA+TGG | + | chr7_3:65029312-65029331 | Msa1116970:three_prime_UTR | 25.0% |
| ! | TAACGAAATCTGTCAGATTT+TGG | - | chr7_3:65025919-65025938 | None:intergenic | 30.0% |
| GTGGTTTGATTAAGAAATCT+AGG | - | chr7_3:65025949-65025968 | None:intergenic | 30.0% | |
| !! | GATTTGGGGTATTGATTTAA+GGG | - | chr7_3:65025976-65025995 | None:intergenic | 30.0% |
| !! | TGATTTGGGGTATTGATTTA+AGG | - | chr7_3:65025977-65025996 | None:intergenic | 30.0% |
| ! | TCGGATTATGTTTTCCATAT+GGG | + | chr7_3:65026591-65026610 | Msa1116970:intron | 30.0% |
| ACTTGTAAGCTAGCTATTAT+AGG | + | chr7_3:65026722-65026741 | Msa1116970:intron | 30.0% | |
| CTTGTAAGCTAGCTATTATA+GGG | + | chr7_3:65026723-65026742 | Msa1116970:intron | 30.0% | |
| TGATTCTACTATTTGTCTGA+TGG | + | chr7_3:65026911-65026930 | Msa1116970:intron | 30.0% | |
| TTTGATATCTTGTGTTTCAG+GGG | + | chr7_3:65027332-65027351 | Msa1116970:intron | 30.0% | |
| CAACACTACAATTAACAGAA+AGG | - | chr7_3:65027418-65027437 | None:intergenic | 30.0% | |
| CTTTCTGTTAATTGTAGTGT+TGG | + | chr7_3:65027416-65027435 | Msa1116970:CDS | 30.0% | |
| GTCTTCAACTTTAATAGACT+GGG | - | chr7_3:65027660-65027679 | None:intergenic | 30.0% | |
| TGTCTTCAACTTTAATAGAC+TGG | - | chr7_3:65027661-65027680 | None:intergenic | 30.0% | |
| GTCTATTAAAGTTGAAGACA+TGG | + | chr7_3:65027661-65027680 | Msa1116970:CDS | 30.0% | |
| TATTAAAGTTGAAGACATGG+AGG | + | chr7_3:65027664-65027683 | Msa1116970:CDS | 30.0% | |
| ! | CATTGCTTCATTTTATGTAC+TGG | + | chr7_3:65027978-65027997 | Msa1116970:CDS | 30.0% |
| TGAGTAAAATTGACACCAAA+AGG | + | chr7_3:65028318-65028337 | Msa1116970:intron | 30.0% | |
| ! | CTTTCAGAATTTAGACCTTT+TGG | - | chr7_3:65028336-65028355 | None:intergenic | 30.0% |
| !! | TCTGAAAGTTGATATCAACT+CGG | + | chr7_3:65028348-65028367 | Msa1116970:intron | 30.0% |
| CAGGACAAATTAGTAGTAAA+TGG | - | chr7_3:65028519-65028538 | None:intergenic | 30.0% | |
| !!! | AAAGTACAAGAGTATTTTGC+TGG | - | chr7_3:65028602-65028621 | None:intergenic | 30.0% |
| ATAGATGTTTCAACATATCC+TGG | - | chr7_3:65028712-65028731 | None:intergenic | 30.0% | |
| CTAATTGCATAAGCTATTGA+TGG | + | chr7_3:65028745-65028764 | Msa1116970:intron | 30.0% | |
| TAGGCCAGATAAATTTCTAA+TGG | - | chr7_3:65028785-65028804 | None:intergenic | 30.0% | |
| TCAACAAATTAGCTCAAGTT+AGG | - | chr7_3:65028804-65028823 | None:intergenic | 30.0% | |
| GGATGAAGAATAAAAAAGGT+TGG | - | chr7_3:65028832-65028851 | None:intergenic | 30.0% | |
| !! | GAAGATGAAATTCTAGGGTT+TGG | - | chr7_3:65025897-65025916 | None:intergenic | 35.0% |
| !! | GTATTGATTTAAGGGAATGG+TGG | - | chr7_3:65025968-65025987 | None:intergenic | 35.0% |
| GGAAATTAGGGTATGATTTG+GGG | - | chr7_3:65025990-65026009 | None:intergenic | 35.0% | |
| GGGAAATTAGGGTATGATTT+GGG | - | chr7_3:65025991-65026010 | None:intergenic | 35.0% | |
| AACTCTCGATTTCTTTACAG+TGG | + | chr7_3:65026081-65026100 | Msa1116970:five_prime_UTR | 35.0% | |
| TCCATCAGGGTAGAAATAAA+TGG | - | chr7_3:65026328-65026347 | None:intergenic | 35.0% | |
| !!! | TCTTTTTGAGTTGACCCTTT+TGG | + | chr7_3:65026422-65026441 | Msa1116970:CDS | 35.0% |
| TTTCAAGAGTCCTCTCAAAA+TGG | - | chr7_3:65026482-65026501 | None:intergenic | 35.0% | |
| ! | GTCGGATTATGTTTTCCATA+TGG | + | chr7_3:65026590-65026609 | Msa1116970:intron | 35.0% |
| ! | CGGATTATGTTTTCCATATG+GGG | + | chr7_3:65026592-65026611 | Msa1116970:intron | 35.0% |
| !! | TGTTTTCCATATGGGGTATT+TGG | + | chr7_3:65026599-65026618 | Msa1116970:intron | 35.0% |
| AATCAACCAAATACCCCATA+TGG | - | chr7_3:65026608-65026627 | None:intergenic | 35.0% | |
| ! | ACACCTTCAATCAAAAGTGT+TGG | - | chr7_3:65026772-65026791 | None:intergenic | 35.0% |
| AATTTGAGAATGGTTGAGGA+AGG | + | chr7_3:65027185-65027204 | Msa1116970:intron | 35.0% | |
| ATTTGAGAATGGTTGAGGAA+GGG | + | chr7_3:65027186-65027205 | Msa1116970:intron | 35.0% | |
| ! | AAGGGATAATGTCGTTTGAT+TGG | + | chr7_3:65027204-65027223 | Msa1116970:intron | 35.0% |
| !!! | GTTACAAGCGGTTTTTTAAG+AGG | + | chr7_3:65027354-65027373 | Msa1116970:CDS | 35.0% |
| CAGAAAGGCAATCATCTTTA+AGG | - | chr7_3:65027403-65027422 | None:intergenic | 35.0% | |
| ! | AATTGGTGACCAATGTTAGA+AGG | - | chr7_3:65027494-65027513 | None:intergenic | 35.0% |
| TCTAACATTGGTCACCAATT+TGG | + | chr7_3:65027494-65027513 | Msa1116970:CDS | 35.0% | |
| TCTCACAACTTGCAATTGTA+TGG | - | chr7_3:65027857-65027876 | None:intergenic | 35.0% | |
| ACTTGTGTTGAATGAGAATG+AGG | + | chr7_3:65027876-65027895 | Msa1116970:intron | 35.0% | |
| ATTGAGCATGATAACTATGC+AGG | + | chr7_3:65027903-65027922 | Msa1116970:intron | 35.0% | |
| TTGAGCATGATAACTATGCA+GGG | + | chr7_3:65027904-65027923 | Msa1116970:intron | 35.0% | |
| !! | GTTCCTTTTATCTTGTTTGC+AGG | + | chr7_3:65027955-65027974 | Msa1116970:intron | 35.0% |
| ATGCCTGCAAACAAGATAAA+AGG | - | chr7_3:65027961-65027980 | None:intergenic | 35.0% | |
| TTACTGGGATGAACACAAAA+TGG | + | chr7_3:65028026-65028045 | Msa1116970:CDS | 35.0% | |
| TACTGGGATGAACACAAAAT+GGG | + | chr7_3:65028027-65028046 | Msa1116970:CDS | 35.0% | |
| ACTTAATCGCTCACTGATAA+AGG | + | chr7_3:65028282-65028301 | Msa1116970:intron | 35.0% | |
| !! | ACAAGACTTTAGGGTAAACT+TGG | - | chr7_3:65028559-65028578 | None:intergenic | 35.0% |
| TGGTCATACACAAGACTTTA+GGG | - | chr7_3:65028568-65028587 | None:intergenic | 35.0% | |
| ! | TTTTGCTGGTACAAATCAAC+TGG | - | chr7_3:65028588-65028607 | None:intergenic | 35.0% |
| ACAGAAAAGATGACAGATGA+TGG | + | chr7_3:65028650-65028669 | Msa1116970:intron | 35.0% | |
| AATTAGTATGTCGATCTTCC+AGG | + | chr7_3:65028691-65028710 | Msa1116970:intron | 35.0% | |
| !! | TGATGGATTTGAGTACTTGA+AGG | + | chr7_3:65028913-65028932 | Msa1116970:CDS | 35.0% |
| AGGAATGAAGCAATACTTGA+TGG | + | chr7_3:65029016-65029035 | Msa1116970:CDS | 35.0% | |
| ! | TTGATGGTAGCGACATAAAT+GGG | + | chr7_3:65029032-65029051 | Msa1116970:CDS | 35.0% |
| TTAAAAAGGAGAGTTGACGA+GGG | - | chr7_3:65029115-65029134 | None:intergenic | 35.0% | |
| TTTAAAAAGGAGAGTTGACG+AGG | - | chr7_3:65029116-65029135 | None:intergenic | 35.0% | |
| ! | GCTCTCACTGTCATTTAAAA+AGG | - | chr7_3:65029129-65029148 | None:intergenic | 35.0% |
| !! | TAGGGTTTGGTACGATTTTG+GGG | - | chr7_3:65025884-65025903 | None:intergenic | 40.0% |
| !! | CTAGGGTTTGGTACGATTTT+GGG | - | chr7_3:65025885-65025904 | None:intergenic | 40.0% |
| !! | TCTAGGGTTTGGTACGATTT+TGG | - | chr7_3:65025886-65025905 | None:intergenic | 40.0% |
| !! | GGGGTATTGATTTAAGGGAA+TGG | - | chr7_3:65025971-65025990 | None:intergenic | 40.0% |
| CGGGAAATTAGGGTATGATT+TGG | - | chr7_3:65025992-65026011 | None:intergenic | 40.0% | |
| ATGAAGGAATTCGATCGATG+CGG | - | chr7_3:65026012-65026031 | None:intergenic | 40.0% | |
| TGGATTTGAAGATGGTTTCG+CGG | - | chr7_3:65026136-65026155 | None:intergenic | 40.0% | |
| GATTGGGAAATACATAGCGT+CGG | + | chr7_3:65026272-65026291 | Msa1116970:CDS | 40.0% | |
| !! | CATAGCGTCGGATATCTTTT+CGG | + | chr7_3:65026284-65026303 | Msa1116970:CDS | 40.0% |
| !! | GCCATTTATTTCTACCCTGA+TGG | + | chr7_3:65026324-65026343 | Msa1116970:CDS | 40.0% |
| TTTCCCACTCTGATCCAAAA+GGG | - | chr7_3:65026439-65026458 | None:intergenic | 40.0% | |
| !! | AGGTTCATAGCCATTTTGAG+AGG | + | chr7_3:65026469-65026488 | Msa1116970:CDS | 40.0% |
| TTTGAGAGGACTCTTGAAAG+TGG | + | chr7_3:65026483-65026502 | Msa1116970:CDS | 40.0% | |
| CCTTATACCTTGAAATACCG+CGG | + | chr7_3:65026507-65026526 | Msa1116970:CDS | 40.0% | |
| !! | GCACCAACACTTTTGATTGA+AGG | + | chr7_3:65026766-65026785 | Msa1116970:intron | 40.0% |
| TGTTTGTGTCCATGCTTCAT+AGG | + | chr7_3:65026881-65026900 | Msa1116970:intron | 40.0% | |
| TGCTGTTGAAATGGGATGAA+TGG | + | chr7_3:65027156-65027175 | Msa1116970:intron | 40.0% | |
| ! | GTCGTTTGATTGGTGTCTAT+TGG | + | chr7_3:65027214-65027233 | Msa1116970:intron | 40.0% |
| !! | ATTGTAGTGTTGGTGTTGTG+AGG | + | chr7_3:65027426-65027445 | Msa1116970:CDS | 40.0% |
| GTTAGAAGGTGGTATTGCAA+TGG | - | chr7_3:65027480-65027499 | None:intergenic | 40.0% | |
| GCAATACCACCTTCTAACAT+TGG | + | chr7_3:65027482-65027501 | Msa1116970:CDS | 40.0% | |
| TTTCCAGCAGTTGACCAAAT+TGG | - | chr7_3:65027511-65027530 | None:intergenic | 40.0% | |
| TTTGGTCAACTGCTGGAAAA+TGG | + | chr7_3:65027512-65027531 | Msa1116970:CDS | 40.0% | |
| CAACTGCTGGAAAATGGTAA+AGG | + | chr7_3:65027518-65027537 | Msa1116970:CDS | 40.0% | |
| !! | AAGTGATGTGAGCTTTGAAG+TGG | + | chr7_3:65027541-65027560 | Msa1116970:CDS | 40.0% |
| !! | ATGTGAGCTTTGAAGTGGAT+GGG | + | chr7_3:65027546-65027565 | Msa1116970:CDS | 40.0% |
| TCTCATAGGACCAAAAAGCT+GGG | - | chr7_3:65027627-65027646 | None:intergenic | 40.0% | |
| TGGGTACTTTGATCTCTCAT+AGG | - | chr7_3:65027641-65027660 | None:intergenic | 40.0% | |
| AAAATGGGCAACAACCTTGA+TGG | + | chr7_3:65028042-65028061 | Msa1116970:CDS | 40.0% | |
| AGTTGTAGCCACGGTATTAA+TGG | - | chr7_3:65028152-65028171 | None:intergenic | 40.0% | |
| !!! | CATACCTCTGAGATTTTCAG+AGG | - | chr7_3:65028239-65028258 | None:intergenic | 40.0% |
| TTCATTCAGCAAGTCCAAAC+TGG | - | chr7_3:65028442-65028461 | None:intergenic | 40.0% | |
| CTGGTCATACACAAGACTTT+AGG | - | chr7_3:65028569-65028588 | None:intergenic | 40.0% | |
| GGCTAGATTTACTGAGCATT+CGG | + | chr7_3:65028976-65028995 | Msa1116970:CDS | 40.0% | |
| ! | CTTGATGGTAGCGACATAAA+TGG | + | chr7_3:65029031-65029050 | Msa1116970:CDS | 40.0% |
| !! | GCAAAGGCTTTAGTTTGAAG+TGG | + | chr7_3:65029066-65029085 | Msa1116970:exon | 40.0% |
| GGAGGATGATGATCGTTTAT+GGG | + | chr7_3:65029160-65029179 | Msa1116970:three_prime_UTR | 40.0% | |
| !! | AGGGTTTGGTACGATTTTGG+GGG | - | chr7_3:65025883-65025902 | None:intergenic | 45.0% |
| TCGATCGATGCGGGAAATTA+GGG | - | chr7_3:65026002-65026021 | None:intergenic | 45.0% | |
| TTCGATCGATGCGGGAAATT+AGG | - | chr7_3:65026003-65026022 | None:intergenic | 45.0% | |
| TGAAGGAATTCGATCGATGC+GGG | - | chr7_3:65026011-65026030 | None:intergenic | 45.0% | |
| AAGATGGTTTCGCGGTTTCT+CGG | - | chr7_3:65026128-65026147 | None:intergenic | 45.0% | |
| !! | GGCGATGATGGATTTGAAGA+TGG | - | chr7_3:65026144-65026163 | None:intergenic | 45.0% |
| TCGATCACCGAAACAGTGAA+AGG | + | chr7_3:65026201-65026220 | Msa1116970:CDS | 45.0% | |
| AGTACCCAGTGATCTTGAAC+TGG | - | chr7_3:65026233-65026252 | None:intergenic | 45.0% | |
| ACTGGGTACTCGCTTTCAAA+GGG | + | chr7_3:65026243-65026262 | Msa1116970:CDS | 45.0% | |
| TACTCGCTTTCAAAGGGGAT+CGG | + | chr7_3:65026249-65026268 | Msa1116970:CDS | 45.0% | |
| TTTCAAAGGGGATCGGGATT+GGG | + | chr7_3:65026256-65026275 | Msa1116970:CDS | 45.0% | |
| ! | TCGGATATCTTTTCGGTTGG+TGG | + | chr7_3:65026291-65026310 | Msa1116970:CDS | 45.0% |
| ! | CGGATATCTTTTCGGTTGGT+GGG | + | chr7_3:65026292-65026311 | Msa1116970:CDS | 45.0% |
| CCTCAACACTCTTTCCATCA+GGG | - | chr7_3:65026341-65026360 | None:intergenic | 45.0% | |
| TCCTCAACACTCTTTCCATC+AGG | - | chr7_3:65026342-65026361 | None:intergenic | 45.0% | |
| CGCAATGAAAAGCGACACAT+AGG | - | chr7_3:65026373-65026392 | None:intergenic | 45.0% | |
| ! | TTGACCCTTTTGGATCAGAG+TGG | + | chr7_3:65026432-65026451 | Msa1116970:CDS | 45.0% |
| ! | TGACCCTTTTGGATCAGAGT+GGG | + | chr7_3:65026433-65026452 | Msa1116970:CDS | 45.0% |
| CTTTCCCACTCTGATCCAAA+AGG | - | chr7_3:65026440-65026459 | None:intergenic | 45.0% | |
| CCGCGGTATTTCAAGGTATA+AGG | - | chr7_3:65026510-65026529 | None:intergenic | 45.0% | |
| CATACTACCGCGGTATTTCA+AGG | - | chr7_3:65026517-65026536 | None:intergenic | 45.0% | |
| TGAAATACCGCGGTAGTATG+TGG | + | chr7_3:65026517-65026536 | Msa1116970:CDS | 45.0% | |
| TGCCAGTATCGTGTCAGTAT+CGG | - | chr7_3:65026797-65026816 | None:intergenic | 45.0% | |
| CACACAACACCTATGAAGCA+TGG | - | chr7_3:65026893-65026912 | None:intergenic | 45.0% | |
| CAATGAAGCAAGACACTCCT+TGG | + | chr7_3:65026984-65027003 | Msa1116970:intron | 45.0% | |
| GCAAGACACTCCTTGGATTT+AGG | + | chr7_3:65026991-65027010 | Msa1116970:intron | 45.0% | |
| ! | AGGTGTCATGCCTAAATCCA+AGG | - | chr7_3:65027004-65027023 | None:intergenic | 45.0% |
| AGCAAGCTATGAAGCAGACA+CGG | - | chr7_3:65027102-65027121 | None:intergenic | 45.0% | |
| !! | TGTCTGCTTCATAGCTTGCT+TGG | + | chr7_3:65027102-65027121 | Msa1116970:intron | 45.0% |
| TCCTCAATGTGTTGTGTGGT+TGG | + | chr7_3:65027129-65027148 | Msa1116970:intron | 45.0% | |
| CCTCAATGTGTTGTGTGGTT+GGG | + | chr7_3:65027130-65027149 | Msa1116970:intron | 45.0% | |
| !! | TTGGGAGGTGCTGTTGAAAT+GGG | + | chr7_3:65027148-65027167 | Msa1116970:intron | 45.0% |
| TGTGTTTCAGGGGTTACAAG+CGG | + | chr7_3:65027342-65027361 | Msa1116970:intron | 45.0% | |
| TGGTGACCAATGTTAGAAGG+TGG | - | chr7_3:65027491-65027510 | None:intergenic | 45.0% | |
| TCACCAATTTGGTCAACTGC+TGG | + | chr7_3:65027505-65027524 | Msa1116970:CDS | 45.0% | |
| !! | GATGTGAGCTTTGAAGTGGA+TGG | + | chr7_3:65027545-65027564 | Msa1116970:CDS | 45.0% |
| !! | TGTGAGCTTTGAAGTGGATG+GGG | + | chr7_3:65027547-65027566 | Msa1116970:CDS | 45.0% |
| !! | AAAAGCTGGGCTCTGAAAAC+AGG | - | chr7_3:65027614-65027633 | None:intergenic | 45.0% |
| ! | GTTTTCAGAGCCCAGCTTTT+TGG | + | chr7_3:65027614-65027633 | Msa1116970:CDS | 45.0% |
| CTCTCATAGGACCAAAAAGC+TGG | - | chr7_3:65027628-65027647 | None:intergenic | 45.0% | |
| ! | CATGGAGGCTCCAGTTTTTA+AGG | + | chr7_3:65027679-65027698 | Msa1116970:CDS | 45.0% |
| CTGACATGCAAGAGCTTACT+GGG | + | chr7_3:65028011-65028030 | Msa1116970:CDS | 45.0% | |
| TAGAAGATGTTGGGCCATCA+AGG | - | chr7_3:65028059-65028078 | None:intergenic | 45.0% | |
| CTGATCGTTATGCCTTAGAG+AGG | + | chr7_3:65028086-65028105 | Msa1116970:CDS | 45.0% | |
| TATAAGCCTGAGCCTCTCTA+AGG | - | chr7_3:65028101-65028120 | None:intergenic | 45.0% | |
| AGATGTCGCCATTAATACCG+TGG | + | chr7_3:65028141-65028160 | Msa1116970:CDS | 45.0% | |
| CAAGGCTAAAGTTGTAGCCA+CGG | - | chr7_3:65028161-65028180 | None:intergenic | 45.0% | |
| !!! | ACCTCTGAGATTTTCAGAGG+TGG | - | chr7_3:65028236-65028255 | None:intergenic | 45.0% |
| ATTCAGCAAGTCCAAACTGG+AGG | - | chr7_3:65028439-65028458 | None:intergenic | 45.0% | |
| GGAACAATCACTGAACTTGC+AGG | - | chr7_3:65028538-65028557 | None:intergenic | 45.0% | |
| TCAGCTGTGATGCAAACTGA+TGG | + | chr7_3:65028896-65028915 | Msa1116970:intron | 45.0% | |
| GTAGCTCAGTCAGAACAGAT+GGG | - | chr7_3:65028946-65028965 | None:intergenic | 45.0% | |
| AGTAGCTCAGTCAGAACAGA+TGG | - | chr7_3:65028947-65028966 | None:intergenic | 45.0% | |
| ATCTGTTCTGACTGAGCTAC+TGG | + | chr7_3:65028946-65028965 | Msa1116970:CDS | 45.0% | |
| ! | CGGACTTTTTATGCAAGCAC+AGG | + | chr7_3:65028996-65029015 | Msa1116970:CDS | 45.0% |
| ! | ATGGTAGCGACATAAATGGG+AGG | + | chr7_3:65029035-65029054 | Msa1116970:CDS | 45.0% |
| ACAGTGAGAGCCTTAGTTAG+AGG | + | chr7_3:65029138-65029157 | Msa1116970:three_prime_UTR | 45.0% | |
| CAGTGAGAGCCTTAGTTAGA+GGG | + | chr7_3:65029139-65029158 | Msa1116970:three_prime_UTR | 45.0% | |
| CATCATCCTCCCTCTAACTA+AGG | - | chr7_3:65029151-65029170 | None:intergenic | 45.0% | |
| GGGAGGATGATGATCGTTTA+TGG | + | chr7_3:65029159-65029178 | Msa1116970:three_prime_UTR | 45.0% | |
| !! | GGTGCTGTTACTGTTCTGTT+AGG | + | chr7_3:65029251-65029270 | Msa1116970:three_prime_UTR | 45.0% |
| !! | GTTTGGTACGATTTTGGGGG+GGG | - | chr7_3:65025880-65025899 | None:intergenic | 50.0% |
| !! | GGTTTGGTACGATTTTGGGG+GGG | - | chr7_3:65025881-65025900 | None:intergenic | 50.0% |
| !! | GGGTTTGGTACGATTTTGGG+GGG | - | chr7_3:65025882-65025901 | None:intergenic | 50.0% |
| TCTTTACAGTGGCTCTCGCA+TGG | + | chr7_3:65026092-65026111 | Msa1116970:exon | 50.0% | |
| CTTTACAGTGGCTCTCGCAT+GGG | + | chr7_3:65026093-65026112 | Msa1116970:exon | 50.0% | |
| GATGAGGAAGATGGCGATGA+TGG | - | chr7_3:65026156-65026175 | None:intergenic | 50.0% | |
| GTGCGAGCCTTTCACTGTTT+CGG | - | chr7_3:65026211-65026230 | None:intergenic | 50.0% | |
| TCGCACCAGTTCAAGATCAC+TGG | + | chr7_3:65026225-65026244 | Msa1116970:CDS | 50.0% | |
| CGCACCAGTTCAAGATCACT+GGG | + | chr7_3:65026226-65026245 | Msa1116970:CDS | 50.0% | |
| CACTGGGTACTCGCTTTCAA+AGG | + | chr7_3:65026242-65026261 | Msa1116970:CDS | 50.0% | |
| CTGGGTACTCGCTTTCAAAG+GGG | + | chr7_3:65026244-65026263 | Msa1116970:CDS | 50.0% | |
| ACTCGCTTTCAAAGGGGATC+GGG | + | chr7_3:65026250-65026269 | Msa1116970:CDS | 50.0% | |
| CTTTCAAAGGGGATCGGGAT+TGG | + | chr7_3:65026255-65026274 | Msa1116970:CDS | 50.0% | |
| ! | GCGTCGGATATCTTTTCGGT+TGG | + | chr7_3:65026288-65026307 | Msa1116970:CDS | 50.0% |
| !! | CCCTGATGGAAAGAGTGTTG+AGG | + | chr7_3:65026338-65026357 | Msa1116970:CDS | 50.0% |
| TTCATTGCGCTTGCGAGTGA+TGG | + | chr7_3:65026384-65026403 | Msa1116970:CDS | 50.0% | |
| TCATTGCGCTTGCGAGTGAT+GGG | + | chr7_3:65026385-65026404 | Msa1116970:CDS | 50.0% | |
| TGGATCAGAGTGGGAAAGAG+AGG | + | chr7_3:65026442-65026461 | Msa1116970:CDS | 50.0% | |
| ! | GAGTGGGAAAGAGAGGCATA+AGG | + | chr7_3:65026449-65026468 | Msa1116970:CDS | 50.0% |
| GAGCTTACCACATACTACCG+CGG | - | chr7_3:65026527-65026546 | None:intergenic | 50.0% | |
| GTCCGATACTGACACGATAC+TGG | + | chr7_3:65026792-65026811 | Msa1116970:intron | 50.0% | |
| ACGGACATGAACACTGGTCA+CGG | - | chr7_3:65027083-65027102 | None:intergenic | 50.0% | |
| CTGCTCCTCAATGTGTTGTG+TGG | + | chr7_3:65027125-65027144 | Msa1116970:intron | 50.0% | |
| CCCAACCACACAACACATTG+AGG | - | chr7_3:65027133-65027152 | None:intergenic | 50.0% | |
| CAATGTGTTGTGTGGTTGGG+AGG | + | chr7_3:65027133-65027152 | Msa1116970:intron | 50.0% | |
| !! | GTTGGGAGGTGCTGTTGAAA+TGG | + | chr7_3:65027147-65027166 | Msa1116970:intron | 50.0% |
| CCAGTAAGCTCTTGCATGTC+AGG | - | chr7_3:65028013-65028032 | None:intergenic | 50.0% | |
| CCTGACATGCAAGAGCTTAC+TGG | + | chr7_3:65028010-65028029 | Msa1116970:CDS | 50.0% | |
| GATGGCCCAACATCTTCTAG+CGG | + | chr7_3:65028060-65028079 | Msa1116970:CDS | 50.0% | |
| AGCAGCCGCTAGAAGATGTT+GGG | - | chr7_3:65028068-65028087 | None:intergenic | 50.0% | |
| GTTATGCCTTAGAGAGGCTC+AGG | + | chr7_3:65028092-65028111 | Msa1116970:CDS | 50.0% | |
| CGTGGCTACAACTTTAGCCT+TGG | + | chr7_3:65028159-65028178 | Msa1116970:CDS | 50.0% | |
| CTGCTTTCAGCTGGAAACAG+TGG | - | chr7_3:65028195-65028214 | None:intergenic | 50.0% | |
| TGAGACAGACTGCTTTCAGC+TGG | - | chr7_3:65028204-65028223 | None:intergenic | 50.0% | |
| ! | GCCACCTCTGAAAATCTCAG+AGG | + | chr7_3:65028232-65028251 | Msa1116970:CDS | 50.0% |
| TAGCAGTGACAGGCTGACAA+AGG | - | chr7_3:65028413-65028432 | None:intergenic | 50.0% | |
| CACTGCTATAGCCTCCAGTT+TGG | + | chr7_3:65028425-65028444 | Msa1116970:intron | 50.0% | |
| GTAGCGACATAAATGGGAGG+CGG | + | chr7_3:65029038-65029057 | Msa1116970:CDS | 50.0% | |
| TAGCGACATAAATGGGAGGC+GGG | + | chr7_3:65029039-65029058 | Msa1116970:CDS | 50.0% | |
| TGAGAGCCTTAGTTAGAGGG+AGG | + | chr7_3:65029142-65029161 | Msa1116970:three_prime_UTR | 50.0% | |
| GCCATCTTCCTCATCCGAAC+CGG | + | chr7_3:65026161-65026180 | Msa1116970:CDS | 55.0% | |
| GATGTCGACGAAGTTGTCGC+CGG | - | chr7_3:65026183-65026202 | None:intergenic | 55.0% | |
| !! | TTTCGGTTGGTGGGTACGAC+TGG | + | chr7_3:65026301-65026320 | Msa1116970:CDS | 55.0% |
| !! | TTCGGTTGGTGGGTACGACT+GGG | + | chr7_3:65026302-65026321 | Msa1116970:CDS | 55.0% |
| GCAGACACGGACATGAACAC+TGG | - | chr7_3:65027089-65027108 | None:intergenic | 55.0% | |
| !! | TGGTGTTGTGAGGTCACGCA+CGG | + | chr7_3:65027436-65027455 | Msa1116970:CDS | 55.0% |
| CAGCAGCCGCTAGAAGATGT+TGG | - | chr7_3:65028069-65028088 | None:intergenic | 55.0% | |
| !! | ACAGTGGTGTTGCTCTGCCA+AGG | - | chr7_3:65028179-65028198 | None:intergenic | 55.0% |
| CTGGAGGCTATAGCAGTGAC+AGG | - | chr7_3:65028423-65028442 | None:intergenic | 55.0% | |
| GACTGAGCTACTGGAGTACG+TGG | + | chr7_3:65028955-65028974 | Msa1116970:CDS | 55.0% | |
| !! | GCCGGTTCGGATGAGGAAGA+TGG | - | chr7_3:65026165-65026184 | None:intergenic | 60.0% |
| !! | AGTTGTCGCCGGTTCGGATG+AGG | - | chr7_3:65026172-65026191 | None:intergenic | 60.0% |
| ! | CGACGAAGTTGTCGCCGGTT+CGG | - | chr7_3:65026178-65026197 | None:intergenic | 60.0% |
| GTTGTGAGGTCACGCACGGA+AGG | + | chr7_3:65027440-65027459 | Msa1116970:CDS | 60.0% | |
| ATGGGAGGCGGGTGAAGCAA+AGG | + | chr7_3:65029050-65029069 | Msa1116970:CDS | 60.0% | |
| GGGGGGAGAGAGAGAGAGAG+AGG | - | chr7_3:65025863-65025882 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 65025823 | 65029424 | 65025823 | ID=Msa1116970;Name=Msa1116970 |
| chr7_3 | mRNA | 65025823 | 65029424 | 65025823 | ID=Msa1116970-mRNA-1;Parent=Msa1116970;Name=Msa1116970-mRNA-1;_AED=0.08;_eAED=0.08;_QI=288|1|1|1|1|1|4|346|410 |
| chr7_3 | exon | 65025823 | 65026538 | 65025823 | ID=Msa1116970-mRNA-1:exon:15408;Parent=Msa1116970-mRNA-1 |
| chr7_3 | exon | 65027352 | 65027700 | 65027352 | ID=Msa1116970-mRNA-1:exon:15409;Parent=Msa1116970-mRNA-1 |
| chr7_3 | exon | 65027977 | 65028253 | 65027977 | ID=Msa1116970-mRNA-1:exon:15410;Parent=Msa1116970-mRNA-1 |
| chr7_3 | exon | 65028900 | 65029424 | 65028900 | ID=Msa1116970-mRNA-1:exon:15411;Parent=Msa1116970-mRNA-1 |
| chr7_3 | five_prime_UTR | 65025823 | 65026110 | 65025823 | ID=Msa1116970-mRNA-1:five_prime_utr;Parent=Msa1116970-mRNA-1 |
| chr7_3 | CDS | 65026111 | 65026538 | 65026111 | ID=Msa1116970-mRNA-1:cds;Parent=Msa1116970-mRNA-1 |
| chr7_3 | CDS | 65027352 | 65027700 | 65027352 | ID=Msa1116970-mRNA-1:cds;Parent=Msa1116970-mRNA-1 |
| chr7_3 | CDS | 65027977 | 65028253 | 65027977 | ID=Msa1116970-mRNA-1:cds;Parent=Msa1116970-mRNA-1 |
| chr7_3 | CDS | 65028900 | 65029078 | 65028900 | ID=Msa1116970-mRNA-1:cds;Parent=Msa1116970-mRNA-1 |
| chr7_3 | three_prime_UTR | 65029079 | 65029424 | 65029079 | ID=Msa1116970-mRNA-1:three_prime_utr;Parent=Msa1116970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
