AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0975540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0975540 MtrunA17_Chr6g0454261 74.022 358 44 3 134 442 71 428 0.0 522
Msa0975540 MtrunA17_Chr6g0454261 73.188 138 37 0 3 140 6 143 1.31e-61 207
Msa0975540 MtrunA17_Chr6g0454331 58.520 446 114 8 1 420 1 401 6.29e-172 491
Msa0975540 MtrunA17_Chr6g0454251 58.491 424 139 5 1 416 1 395 2.14e-166 473
Msa0975540 MtrunA17_Chr6g0454141 59.155 426 137 6 3 420 6 402 5.04e-165 473
Msa0975540 MtrunA17_Chr6g0454211 57.269 454 153 6 1 442 291 715 1.43e-160 472
Msa0975540 MtrunA17_Chr6g0454211 66.292 267 14 4 194 415 1 236 3.78e-106 332
Msa0975540 MtrunA17_Chr6g0452771 60.613 424 130 8 5 420 8 402 6.65e-160 460
Msa0975540 MtrunA17_Chr6g0454321 58.294 422 145 8 3 420 6 400 6.97e-156 456
Msa0975540 MtrunA17_Chr6g0454321 79.675 123 25 0 1 123 498 620 5.69e-60 207
Msa0975540 MtrunA17_Chr6g0454321 60.714 56 22 0 134 189 565 620 3.44e-12 68.6
Msa0975540 MtrunA17_Chr6g0454201 55.333 450 160 7 5 442 9 429 1.62e-155 449
Msa0975540 MtrunA17_Chr6g0454361 59.859 426 130 6 5 420 9 403 3.66e-155 448
Msa0975540 MtrunA17_Chr6g0454151 63.764 356 82 3 134 442 71 426 1.52e-154 446
Msa0975540 MtrunA17_Chr6g0454151 77.536 138 31 0 3 140 6 143 6.20e-60 203
Msa0975540 MtrunA17_Chr6g0454401 53.348 463 106 5 3 420 6 403 2.89e-154 446
Msa0975540 MtrunA17_Chr6g0453961 53.030 462 105 8 5 420 17 412 4.02e-150 436
Msa0975540 MtrunA17_Chr6g0454351 55.116 430 133 8 2 420 7 387 1.30e-149 433
Msa0975540 MtrunA17_Chr8g0359821 56.047 430 142 10 3 420 6 400 7.16e-149 432
Msa0975540 MtrunA17_Chr6g0454121 64.798 321 68 2 145 420 81 401 1.36e-141 414
Msa0975540 MtrunA17_Chr6g0454181 51.410 461 113 7 5 420 8 402 1.59e-141 413
Msa0975540 MtrunA17_Chr6g0454191 52.165 462 109 7 5 420 8 403 1.83e-141 413
Msa0975540 MtrunA17_Chr8g0336331 50.862 464 112 8 3 420 6 399 6.31e-141 412
Msa0975540 MtrunA17_Chr6g0454131 63.551 321 72 2 145 420 81 401 8.75e-140 409
Msa0975540 MtrunA17_Chr6g0453951 49.569 464 123 7 2 420 52 449 3.20e-138 407
Msa0975540 MtrunA17_Chr7g0217881 50.106 471 138 6 3 442 6 410 5.24e-135 396
Msa0975540 MtrunA17_Chr6g0454291 59.337 332 90 2 134 420 68 399 2.49e-132 390
Msa0975540 MtrunA17_Chr6g0454291 87.143 140 18 0 1 140 1 140 1.21e-70 231
Msa0975540 MtrunA17_Chr5g0423981 49.333 450 104 10 5 420 8 367 2.74e-126 373
Msa0975540 MtrunA17_Chr3g0078841 48.491 464 124 9 3 420 6 400 7.11e-126 373
Msa0975540 MtrunA17_Chr6g0454341 46.767 464 132 7 3 420 6 400 6.98e-124 368
Msa0975540 MtrunA17_Chr5g0426431 45.413 436 194 9 7 433 12 412 4.25e-120 358
Msa0975540 MtrunA17_Chr6g0454301 46.121 464 135 9 3 420 259 653 2.79e-117 359
Msa0975540 MtrunA17_Chr6g0454301 73.034 178 44 1 269 442 1 178 5.56e-84 272
Msa0975540 MtrunA17_Chr3g0092641 43.478 437 203 10 6 433 11 412 8.29e-115 345
Msa0975540 MtrunA17_Chr6g0454171 67.339 248 44 3 194 420 1 232 1.21e-110 328
Msa0975540 MtrunA17_Chr4g0050341 42.117 444 215 11 1 433 13 425 5.79e-100 307
Msa0975540 MtrunA17_Chr3g0118771 40.662 423 220 8 2 420 16 411 6.88e-100 307
Msa0975540 MtrunA17_Chr3g0118671 41.315 426 211 11 3 420 2 396 3.07e-98 302
Msa0975540 MtrunA17_Chr3g0118661 40.281 427 211 11 4 420 10 402 7.32e-94 291
Msa0975540 MtrunA17_Chr3g0118711 39.817 437 200 12 4 420 10 403 2.48e-93 290
Msa0975540 MtrunA17_Chr6g0454221 84.314 153 23 1 269 420 1 153 1.74e-90 276
Msa0975540 MtrunA17_Chr6g0454271 79.739 153 31 0 268 420 57 209 6.59e-90 275
Msa0975540 MtrunA17_Chr8g0355011 54.839 248 107 2 177 420 38 284 2.19e-84 263
Msa0975540 MtrunA17_Chr3g0118751 38.771 423 197 11 3 420 2 367 4.18e-84 265
Msa0975540 MtrunA17_Chr2g0278711 36.344 465 174 11 5 421 9 399 2.73e-79 253
Msa0975540 MtrunA17_Chr6g0453981 55.411 231 58 2 194 379 1 231 1.65e-76 238
Msa0975540 MtrunA17_Chr6g0454281 79.137 139 29 0 2 140 5 143 1.49e-74 232
Msa0975540 MtrunA17_Chr6g0454281 52.206 136 64 1 124 258 60 195 6.32e-38 137
Msa0975540 MtrunA17_Chr5g0426401 48.148 243 78 2 238 433 4 245 5.46e-73 232
Msa0975540 MtrunA17_Chr3g0118691 37.082 329 156 5 140 420 80 405 9.59e-68 223
Msa0975540 MtrunA17_Chr3g0118691 48.921 139 66 2 4 142 12 145 4.87e-37 141
Msa0975540 MtrunA17_Chr3g0118701 37.690 329 154 5 140 420 80 405 2.59e-67 223
Msa0975540 MtrunA17_Chr3g0118701 50.000 138 64 2 5 142 13 145 9.88e-37 140
Msa0975540 MtrunA17_Chr6g0453941 52.703 222 59 2 195 370 54 275 1.23e-64 209
Msa0975540 MtrunA17_Chr6g0453941 74.138 58 11 1 2 59 6 59 6.27e-20 89.4
Msa0975540 MtrunA17_Chr6g0454231 73.913 138 33 1 3 140 246 380 1.90e-62 209
Msa0975540 MtrunA17_Chr6g0454231 57.616 151 26 2 270 420 28 140 3.26e-48 171
Msa0975540 MtrunA17_Chr8g0336271 69.565 138 38 2 3 140 6 139 4.39e-60 197
Msa0975540 MtrunA17_Chr3g0118721 54.902 153 66 2 271 420 60 212 1.61e-55 186
Msa0975540 MtrunA17_Chr7g0218821 29.907 428 226 13 6 419 4 371 2.62e-53 184
Msa0975540 MtrunA17_Chr8g0336261 81.720 93 17 0 328 420 1 93 1.02e-52 173
Msa0975540 MtrunA17_Chr3g0112771 32.207 444 234 17 9 442 14 400 3.27e-52 182
Msa0975540 MtrunA17_Chr7g0218841 28.537 417 235 11 6 419 5 361 1.27e-49 174
Msa0975540 MtrunA17_Chr6g0454371 64.706 119 38 1 328 442 1 119 1.72e-49 166
Msa0975540 MtrunA17_Chr6g0454111 56.790 162 24 3 233 348 22 183 3.47e-49 166
Msa0975540 MtrunA17_Chr3g0112761 31.027 448 235 15 9 442 10 397 7.70e-49 173
Msa0975540 MtrunA17_Chr7g0218791 27.818 417 248 10 6 420 4 369 9.78e-48 169
Msa0975540 MtrunA17_Chr5g0412111 34.028 288 127 6 185 420 109 385 1.69e-47 169
Msa0975540 MtrunA17_Chr5g0426411 55.396 139 56 3 3 140 8 141 2.67e-46 157
Msa0975540 MtrunA17_Chr4g0032331 30.317 442 237 14 2 431 3 385 1.70e-44 161
Msa0975540 MtrunA17_Chr7g0249981 28.982 452 248 18 4 443 22 412 7.75e-44 160
Msa0975540 MtrunA17_Chr1g0207861 30.717 446 255 16 2 436 3 405 2.24e-43 159
Msa0975540 MtrunA17_Chr5g0412131 34.737 285 131 6 185 420 115 393 3.59e-42 155
Msa0975540 MtrunA17_Chr6g0464881 28.979 421 236 13 6 420 10 373 9.37e-42 154
Msa0975540 MtrunA17_Chr5g0412101 32.867 286 136 6 185 420 115 394 9.53e-41 151
Msa0975540 MtrunA17_Chr3g0098111 30.631 444 248 17 7 436 9 406 1.31e-40 151
Msa0975540 MtrunA17_Chr1g0161351 30.631 444 248 16 7 436 37 434 2.12e-40 151
Msa0975540 MtrunA17_Chr1g0207931 35.249 261 136 8 184 436 199 434 9.18e-39 146
Msa0975540 MtrunA17_Chr8g0377921 28.074 431 237 15 6 418 2 377 1.28e-38 145
Msa0975540 MtrunA17_Chr8g0365811 30.134 448 247 18 9 436 11 412 5.59e-38 147
Msa0975540 MtrunA17_Chr8g0365811 29.470 302 157 9 184 436 600 894 2.33e-32 130
Msa0975540 MtrunA17_Chr7g0243631 26.218 431 252 14 7 420 13 394 6.38e-38 144
Msa0975540 MtrunA17_Chr1g0207951 30.425 447 247 14 2 436 651 1045 1.05e-37 146
Msa0975540 MtrunA17_Chr1g0207951 28.689 366 199 9 127 443 164 516 1.30e-35 140
Msa0975540 MtrunA17_Chr4g0053321 32.967 273 140 10 186 418 127 396 2.37e-37 142
Msa0975540 MtrunA17_Chr7g0250001 27.594 453 255 18 3 443 2 393 3.77e-37 141
Msa0975540 MtrunA17_Chr7g0218831 42.949 156 77 2 265 420 218 361 5.88e-37 140
Msa0975540 MtrunA17_Chr7g0218831 32.353 136 78 6 6 140 5 127 8.54e-13 70.1
Msa0975540 MtrunA17_Chr5g0401721 39.444 180 100 4 248 420 212 389 8.06e-37 140
Msa0975540 MtrunA17_Chr7g0243951 26.744 430 257 17 4 420 8 392 1.15e-36 140
Msa0975540 MtrunA17_Chr7g0243931 27.273 429 261 15 2 420 12 399 2.32e-36 139
Msa0975540 MtrunA17_Chr3g0121991 29.977 427 240 17 7 418 79 461 7.22e-36 139
Msa0975540 MtrunA17_Chr1g0207981 35.071 211 129 3 235 437 202 412 8.69e-36 137
Msa0975540 MtrunA17_Chr7g0243771 26.207 435 252 16 3 420 2 384 2.21e-35 137
Msa0975540 MtrunA17_Chr8g0380531 28.302 424 239 15 4 418 7 374 2.26e-35 136
Msa0975540 MtrunA17_Chr7g0243681 25.287 435 246 13 7 420 11 387 3.72e-35 136
Msa0975540 MtrunA17_Chr7g0265041 27.484 473 245 20 2 443 6 411 8.89e-35 135
Msa0975540 MtrunA17_Chr4g0011051 32.039 309 163 12 155 420 91 395 1.10e-34 135
Msa0975540 MtrunA17_Chr3g0122001 27.706 462 259 13 7 443 486 897 1.38e-34 137
Msa0975540 MtrunA17_Chr3g0122001 28.341 434 238 15 7 418 6 388 2.09e-32 130
Msa0975540 MtrunA17_Chr4g0053501 30.000 310 166 11 150 418 82 381 3.53e-34 133
Msa0975540 MtrunA17_Chr7g0243801 26.174 447 241 16 1 420 1 385 6.04e-34 132
Msa0975540 MtrunA17_Chr7g0218811 41.139 158 81 3 262 419 225 370 8.50e-34 132
Msa0975540 MtrunA17_Chr7g0218811 33.824 136 77 4 6 140 14 137 2.66e-14 74.7
Msa0975540 MtrunA17_Chr8g0335141 33.891 239 132 6 218 441 180 407 1.19e-33 131
Msa0975540 MtrunA17_Chr6g0464861 26.754 456 250 18 6 443 10 399 1.94e-33 130
Msa0975540 MtrunA17_Chr1g0207971 28.012 332 165 10 163 443 91 399 2.77e-33 130
Msa0975540 MtrunA17_Chr8g0336691 37.745 204 97 7 242 431 1122 1309 4.62e-33 132
Msa0975540 MtrunA17_Chr8g0336691 35.233 193 95 5 242 420 216 392 1.68e-27 116
Msa0975540 MtrunA17_Chr8g0336691 34.555 191 93 7 242 431 683 842 2.39e-24 106
Msa0975540 MtrunA17_Chr8g0382021 27.523 436 240 15 1 419 28 404 5.65e-33 130
Msa0975540 MtrunA17_Chr1g0207831 32.014 278 141 9 179 418 110 377 7.68e-33 129
Msa0975540 MtrunA17_Chr4g0060511 25.450 444 253 16 2 420 6 396 1.06e-32 129
Msa0975540 MtrunA17_Chr7g0243861 31.295 278 142 9 187 420 124 396 1.38e-32 129
Msa0975540 MtrunA17_Chr4g0044511 29.348 276 149 9 187 420 146 417 1.93e-32 129
Msa0975540 MtrunA17_Chr7g0232311 37.824 193 87 4 242 420 209 382 3.10e-32 127
Msa0975540 MtrunA17_Chr5g0448551 26.603 421 256 12 1 418 1 371 4.95e-32 127
Msa0975540 MtrunA17_Chr6g0462521 35.500 200 106 5 252 442 208 393 9.72e-32 126
Msa0975540 MtrunA17_Chr6g0462531 31.206 282 130 8 211 442 140 407 1.39e-31 125
Msa0975540 MtrunA17_Chr6g0459311 37.363 182 90 3 261 430 230 399 1.99e-31 125
Msa0975540 MtrunA17_Chr5g0414321 29.866 298 161 13 157 418 83 368 2.59e-31 125
Msa0975540 MtrunA17_Chr5g0414331 28.956 297 165 10 157 418 85 370 3.77e-31 124
Msa0975540 MtrunA17_Chr5g0419761 28.479 309 168 10 157 420 92 392 5.56e-31 124
Msa0975540 MtrunA17_Chr7g0265051 32.602 319 152 15 151 420 89 393 7.09e-31 124
Msa0975540 MtrunA17_Chr7g0275681 28.571 315 169 11 169 443 106 404 7.54e-31 124
Msa0975540 MtrunA17_Chr7g0243611 29.482 251 153 6 194 420 3 253 7.93e-31 120
Msa0975540 MtrunA17_Chr7g0243761 25.647 425 262 13 7 420 11 392 9.56e-31 123
Msa0975540 MtrunA17_Chr8g0347281 29.180 305 157 9 185 441 119 412 1.47e-30 123
Msa0975540 MtrunA17_Chr7g0265101 28.852 305 163 11 161 420 100 395 2.88e-30 122
Msa0975540 MtrunA17_Chr8g0373301 38.333 180 87 5 273 441 240 406 4.17e-30 121
Msa0975540 MtrunA17_Chr8g0347271 28.525 305 159 10 185 441 120 413 6.25e-30 121
Msa0975540 MtrunA17_Chr5g0420801 26.728 434 245 17 1 418 1 377 6.37e-30 121
Msa0975540 MtrunA17_Chr6g0486251 34.375 192 102 3 251 430 213 392 9.19e-30 120
Msa0975540 MtrunA17_Chr6g0486201 34.375 192 102 3 251 430 213 392 9.19e-30 120
Msa0975540 MtrunA17_Chr7g0243781 30.882 272 142 10 187 420 119 382 1.26e-29 120
Msa0975540 MtrunA17_Chr6g0462551 38.889 180 92 5 252 424 219 387 1.29e-29 120
Msa0975540 MtrunA17_Chr8g0336741 37.158 183 93 5 271 441 239 411 1.43e-29 120
Msa0975540 MtrunA17_Chr8g0361371 26.709 468 245 17 1 435 1 403 1.49e-29 120
Msa0975540 MtrunA17_Chr8g0339601 42.105 171 73 6 273 427 96 256 1.71e-29 117
Msa0975540 MtrunA17_Chr6g0462541 38.608 158 79 3 271 424 243 386 1.74e-29 120
Msa0975540 MtrunA17_Chr7g0232401 26.954 371 192 13 97 420 48 386 1.90e-29 120
Msa0975540 MtrunA17_Chr7g0249961 36.612 183 106 4 266 443 28 205 2.00e-29 115
Msa0975540 MtrunA17_Chr7g0235051 27.559 254 152 6 187 420 121 362 2.00e-29 119
Msa0975540 MtrunA17_Chr6g0449931 25.478 471 254 18 3 441 2 407 2.22e-29 119
Msa0975540 MtrunA17_Chr8g0339631 39.645 169 78 6 273 427 237 395 2.59e-29 119
Msa0975540 MtrunA17_Chr8g0335161 37.500 200 95 6 251 438 214 395 2.90e-29 119
Msa0975540 MtrunA17_Chr8g0336651 34.634 205 102 7 243 431 985 1173 3.17e-29 121
Msa0975540 MtrunA17_Chr8g0336651 32.456 228 117 7 212 427 188 390 1.98e-28 119
Msa0975540 MtrunA17_Chr8g0336651 35.503 169 77 5 271 438 572 709 8.97e-26 110
Msa0975540 MtrunA17_Chr8g0336731 35.979 189 97 6 265 441 254 430 3.57e-29 119
Msa0975540 MtrunA17_Chr8g0339461 40.000 185 85 6 273 441 237 411 3.63e-29 119
Msa0975540 MtrunA17_Chr7g0265151 28.939 311 164 10 157 420 90 390 3.77e-29 119
Msa0975540 MtrunA17_Chr7g0275511 29.123 285 159 8 185 427 118 401 4.00e-29 119
Msa0975540 MtrunA17_Chr6g0464841 28.426 394 219 16 97 443 23 400 4.52e-29 118
Msa0975540 MtrunA17_Chr1g0173121 42.424 132 64 3 300 419 247 378 4.96e-29 118
Msa0975540 MtrunA17_Chr4g0042931 25.386 453 263 15 1 434 1 397 6.04e-29 118
Msa0975540 MtrunA17_Chr1g0153451 36.207 174 86 3 271 431 232 393 7.76e-29 118
Msa0975540 MtrunA17_Chr8g0339441 41.176 153 74 3 305 441 217 369 8.51e-29 117
Msa0975540 MtrunA17_Chr7g0265141 31.119 286 147 11 179 420 113 392 8.54e-29 118
Msa0975540 MtrunA17_Chr8g0334861 34.857 175 88 4 271 431 231 393 1.54e-28 117
Msa0975540 MtrunA17_Chr8g0339451 42.683 164 68 6 273 420 229 382 1.65e-28 117
Msa0975540 MtrunA17_Chr6g0462571 37.037 189 95 7 239 420 209 380 2.85e-28 116
Msa0975540 MtrunA17_Chr4g0014061 37.821 156 84 2 273 420 231 381 3.22e-28 116
Msa0975540 MtrunA17_Chr7g0249931 27.790 439 215 21 7 420 40 401 3.37e-28 116
Msa0975540 MtrunA17_Chr1g0159551 41.667 132 65 3 300 419 244 375 5.03e-28 115
Msa0975540 MtrunA17_Chr5g0440421 25.376 465 235 20 3 419 6 406 5.08e-28 115
Msa0975540 MtrunA17_Chr4g0042891 35.088 171 96 3 270 434 238 399 6.22e-28 115
Msa0975540 MtrunA17_Chr6g0464871 28.453 362 197 13 127 443 68 412 7.32e-28 115
Msa0975540 MtrunA17_Chr8g0355221 25.293 427 259 16 8 420 16 396 1.05e-27 115
Msa0975540 MtrunA17_Chr5g0431441 26.686 341 177 9 149 441 90 405 1.05e-27 114
Msa0975540 MtrunA17_Chr8g0369341 27.790 457 250 20 1 436 1 398 1.19e-27 114
Msa0975540 MtrunA17_Chr1g0153461 41.844 141 69 3 304 431 2 142 1.35e-27 109
Msa0975540 MtrunA17_Chr5g0393591 43.697 119 65 1 302 418 251 369 3.47e-27 113
Msa0975540 MtrunA17_Chr4g0044481 29.880 251 147 8 187 418 137 377 3.55e-27 112
Msa0975540 MtrunA17_Chr1g0165701 29.927 274 146 9 188 420 125 393 6.75e-27 112
Msa0975540 MtrunA17_Chr1g0179901 25.056 443 250 17 4 420 13 399 8.21e-27 112
Msa0975540 MtrunA17_Chr8g0334831 25.996 477 241 21 3 435 2 410 8.35e-27 112
Msa0975540 MtrunA17_Chr7g0232391 28.881 277 157 7 184 420 108 384 9.52e-27 112
Msa0975540 MtrunA17_Chr7g0243711 36.364 154 94 3 270 420 73 225 9.71e-27 109
Msa0975540 MtrunA17_Chr7g0243871 29.412 272 145 9 187 420 119 381 1.06e-26 112
Msa0975540 MtrunA17_Chr6g0463891 28.159 277 154 7 185 420 121 393 1.49e-26 111
Msa0975540 MtrunA17_Chr7g0232331 29.643 280 151 8 184 420 108 384 1.91e-26 111
Msa0975540 MtrunA17_Chr4g0044521 32.367 207 117 7 223 419 182 375 2.52e-26 110
Msa0975540 MtrunA17_Chr8g0334851 31.383 188 105 5 267 441 233 409 6.51e-26 109
Msa0975540 MtrunA17_Chr7g0243811 35.897 156 89 3 268 420 210 357 6.61e-26 108
Msa0975540 MtrunA17_Chr5g0416821 28.214 280 156 8 185 422 123 399 7.10e-26 109
Msa0975540 MtrunA17_Chr7g0232341 28.881 277 157 8 184 420 108 384 1.02e-25 108
Msa0975540 MtrunA17_Chr7g0232411 31.937 191 103 6 242 420 209 384 1.41e-25 108
Msa0975540 MtrunA17_Chr5g0403641 40.141 142 69 4 306 431 289 430 1.42e-25 108
Msa0975540 MtrunA17_Chr5g0416741 28.571 273 154 8 187 420 123 393 1.60e-25 108
Msa0975540 MtrunA17_Chr8g0366391 27.839 273 154 7 187 418 119 389 1.96e-25 108
Msa0975540 MtrunA17_Chr4g0072761 28.797 316 177 12 139 420 73 374 2.28e-25 107
Msa0975540 MtrunA17_Chr7g0243851 36.000 150 90 4 274 418 201 349 3.06e-25 107
Msa0975540 MtrunA17_Chr6g0464921 27.327 333 192 13 127 420 53 374 4.68e-25 107
Msa0975540 MtrunA17_Chr3g0079731 36.970 165 79 4 271 420 244 398 5.54e-25 107
Msa0975540 MtrunA17_Chr3g0106231 26.756 299 163 8 156 419 88 365 8.03e-25 106
Msa0975540 MtrunA17_Chr5g0401851 27.437 277 153 9 188 420 121 393 1.46e-24 105
Msa0975540 MtrunA17_Chr5g0431401 24.444 450 260 16 3 441 6 386 2.03e-24 105
Msa0975540 MtrunA17_Chr7g0243911 40.152 132 75 3 292 420 9 139 2.10e-24 100
Msa0975540 MtrunA17_Chr8g0377941 37.500 152 84 2 292 439 256 400 2.34e-24 105
Msa0975540 MtrunA17_Chr5g0432731 38.961 154 70 4 273 420 76 211 4.47e-24 101
Msa0975540 MtrunA17_Chr5g0419771 26.102 295 169 10 169 420 130 418 4.86e-24 104
Msa0975540 MtrunA17_Chr5g0431371 25.169 445 255 16 7 441 10 386 1.10e-23 102
Msa0975540 MtrunA17_Chr4g0044501 27.857 280 142 9 187 418 120 387 1.23e-23 103
Msa0975540 MtrunA17_Chr5g0431361 25.294 340 175 9 150 441 83 391 1.33e-23 102
Msa0975540 MtrunA17_Chr2g0302961 28.920 287 155 9 185 432 117 393 1.77e-23 102
Msa0975540 MtrunA17_Chr5g0431421 24.944 449 259 15 3 441 6 386 1.85e-23 102
Msa0975540 MtrunA17_Chr2g0329111 26.596 282 147 10 187 419 119 389 2.02e-23 102
Msa0975540 MtrunA17_Chr4g0066221 25.641 429 244 17 10 418 14 387 3.39e-23 102
Msa0975540 MtrunA17_Chr8g0370941 30.645 186 91 6 273 431 240 414 3.52e-23 102
Msa0975540 MtrunA17_Chr5g0448521 32.778 180 98 5 270 437 227 395 3.57e-23 101
Msa0975540 MtrunA17_Chr6g0454381 40.845 142 39 2 194 290 1 142 4.84e-23 94.7
Msa0975540 MtrunA17_Chr7g0232351 31.188 202 110 7 227 415 193 378 5.72e-23 100
Msa0975540 MtrunA17_Chr7g0265111 38.971 136 70 3 293 420 293 423 5.84e-23 101
Msa0975540 MtrunA17_Chr2g0302991 28.912 294 150 11 185 432 110 390 5.85e-23 100
Msa0975540 MtrunA17_Chr4g0066281 38.333 120 69 1 304 418 254 373 6.73e-23 100
Msa0975540 MtrunA17_Chr2g0294941 29.044 272 151 9 187 418 17 286 9.30e-23 99.4
Msa0975540 MtrunA17_Chr4g0066201 27.570 428 224 21 10 418 21 381 9.75e-23 100
Msa0975540 MtrunA17_Chr8g0374941 31.928 166 102 3 262 418 688 851 1.41e-22 101
Msa0975540 MtrunA17_Chr8g0374941 39.516 124 66 3 304 418 1201 1324 1.24e-21 98.2
Msa0975540 MtrunA17_Chr8g0374941 38.710 124 67 3 304 418 263 386 2.57e-21 97.4
Msa0975540 MtrunA17_Chr8g0374901 40.323 124 65 3 304 418 262 385 1.85e-22 99.8
Msa0975540 MtrunA17_Chr5g0442581 32.558 172 94 5 273 432 238 399 1.87e-22 100
Msa0975540 MtrunA17_Chr7g0218311 25.000 428 246 13 10 418 19 390 2.51e-22 99.4
Msa0975540 MtrunA17_Chr5g0409591 37.143 140 70 4 296 419 267 404 2.56e-22 99.4
Msa0975540 MtrunA17_Chr8g0374931 39.024 123 67 2 304 418 266 388 3.50e-22 99.0
Msa0975540 MtrunA17_Chr4g0066151 27.632 304 163 11 159 418 96 386 3.63e-22 99.0
Msa0975540 MtrunA17_Chr3g0106251 35.811 148 78 4 273 419 76 207 3.92e-22 96.7
Msa0975540 MtrunA17_Chr5g0429711 27.852 298 160 10 165 420 95 379 4.98e-22 98.2
Msa0975540 MtrunA17_Chr2g0294921 39.024 123 67 2 304 418 415 537 7.18e-22 98.6
Msa0975540 MtrunA17_Chr8g0336321 23.799 437 262 16 1 419 1 384 7.31e-22 97.8
Msa0975540 MtrunA17_Chr2g0294931 39.024 123 67 2 304 418 266 388 1.18e-21 97.4
Msa0975540 MtrunA17_Chr5g0431431 38.000 150 69 5 273 418 180 309 1.25e-21 95.9
Msa0975540 MtrunA17_Chr8g0374971 31.737 167 103 4 262 419 224 388 1.33e-21 97.1
Msa0975540 MtrunA17_Chr5g0442541 25.418 299 160 7 185 432 102 388 1.72e-21 96.7
Msa0975540 MtrunA17_Chr5g0442601 32.240 183 102 5 273 443 164 336 2.20e-21 97.4
Msa0975540 MtrunA17_Chr5g0442601 31.977 172 93 5 273 432 639 798 7.92e-21 95.5
Msa0975540 MtrunA17_Chr4g0066131 28.044 271 156 8 184 419 116 382 2.22e-21 96.3
Msa0975540 MtrunA17_Chr7g0241781 42.735 117 56 3 306 419 241 349 2.26e-21 95.9
Msa0975540 MtrunA17_Chr4g0066261 27.599 279 152 10 184 418 116 388 2.28e-21 96.3
Msa0975540 MtrunA17_Chr5g0429681 32.961 179 104 6 264 436 265 433 3.92e-21 95.9
Msa0975540 MtrunA17_Chr3g0118741 63.793 58 21 0 3 60 2 59 4.34e-21 87.0
Msa0975540 MtrunA17_Chr2g0307961 41.600 125 62 4 308 431 280 394 6.55e-21 94.7
Msa0975540 MtrunA17_Chr5g0442561 31.034 174 92 6 273 432 236 395 7.41e-21 94.7
Msa0975540 MtrunA17_Chr8g0336251 23.570 437 263 16 1 419 1 384 8.40e-21 94.7
Msa0975540 MtrunA17_Chr5g0442511 31.737 167 92 5 273 427 257 413 8.89e-21 94.7
Msa0975540 MtrunA17_Chr5g0428081 33.708 178 101 6 274 443 236 404 8.90e-21 94.7
Msa0975540 MtrunA17_Chr5g0442491 30.857 175 96 4 270 432 236 397 1.56e-20 94.0
Msa0975540 MtrunA17_Chr7g0231631 33.951 162 98 4 264 422 30 185 2.12e-20 90.9
Msa0975540 MtrunA17_Chr7g0241801 40.678 118 59 3 305 419 240 349 2.68e-20 92.8
Msa0975540 MtrunA17_Chr6g0463861 37.500 128 66 3 304 419 257 382 2.69e-20 93.2
Msa0975540 MtrunA17_Chr6g0463851 34.400 125 72 1 304 418 266 390 3.46e-20 92.8
Msa0975540 MtrunA17_Chr5g0442521 30.387 181 101 4 270 437 235 403 4.95e-20 92.4
Msa0975540 MtrunA17_Chr5g0410941 33.987 153 91 4 274 418 246 396 7.98e-20 91.7
Msa0975540 MtrunA17_Chr3g0092031 38.136 118 70 2 304 420 2 117 9.16e-20 87.4
Msa0975540 MtrunA17_Chr6g0482061 23.673 452 272 15 7 434 11 413 2.24e-19 90.5
Msa0975540 MtrunA17_Chr8g0357361 38.462 117 69 2 304 419 116 230 9.44e-19 85.9
Msa0975540 MtrunA17_Chr4g0072771 32.515 163 95 3 268 430 250 397 1.38e-18 87.8
Msa0975540 MtrunA17_Chr4g0066171 32.000 150 95 3 274 418 236 383 4.08e-18 86.7
Msa0975540 MtrunA17_Chr2g0278721 42.982 114 62 3 308 420 785 896 4.24e-18 87.4
Msa0975540 MtrunA17_Chr2g0278721 34.454 119 75 2 303 420 269 385 9.02e-15 77.0
Msa0975540 MtrunA17_Chr3g0079711 43.269 104 42 4 332 419 3 105 7.11e-18 81.6
Msa0975540 MtrunA17_Chr1g0207881 27.010 311 183 12 132 436 49 321 1.15e-17 84.7
Msa0975540 MtrunA17_Chr8g0367221 41.071 112 63 2 307 415 1057 1168 2.95e-17 84.7
Msa0975540 MtrunA17_Chr8g0367221 39.286 112 65 2 307 415 270 381 1.61e-16 82.4
Msa0975540 MtrunA17_Chr8g0367221 34.286 140 85 4 285 420 1527 1663 8.08e-16 80.5
Msa0975540 MtrunA17_Chr5g0427571 36.975 119 73 2 303 419 100 218 5.98e-17 81.3
Msa0975540 MtrunA17_Chr4g0069611 36.842 114 69 2 308 420 269 380 9.61e-17 82.4
Msa0975540 MtrunA17_Chr6g0466831 37.398 123 70 4 301 420 265 383 3.63e-16 80.5
Msa0975540 MtrunA17_Chr8g0361411 30.220 182 108 6 244 419 206 374 4.30e-16 80.1
Msa0975540 MtrunA17_Chr8g0337381 53.846 52 24 0 376 427 2 53 5.58e-16 74.3
Msa0975540 MtrunA17_Chr6g0466841 36.364 121 70 4 303 420 267 383 1.19e-15 79.0
Msa0975540 MtrunA17_Chr6g0464091 33.898 118 75 2 304 420 275 390 1.61e-15 78.6
Msa0975540 MtrunA17_Chr2g0302851 34.454 119 75 2 303 420 265 381 2.63e-15 77.8
Msa0975540 MtrunA17_Chr4g0039881 35.294 119 74 2 303 420 241 357 7.05e-15 76.3
Msa0975540 MtrunA17_Chr3g0118731 42.857 84 43 2 59 142 28 106 1.26e-13 68.6
Msa0975540 MtrunA17_Chr2g0278741 33.613 119 76 2 303 420 351 467 1.48e-13 72.8
Msa0975540 MtrunA17_Chr7g0267931 72.973 37 9 1 12 47 25 61 2.78e-13 64.7
Msa0975540 MtrunA17_Chr6g0454391 87.097 31 4 0 390 420 11 41 8.50e-13 65.1
Msa0975540 MtrunA17_Chr7g0243731 45.098 51 28 0 368 418 1 51 1.86e-12 62.8
Msa0975540 MtrunA17_Chr4g0066141 54.545 44 20 0 376 419 216 259 3.82e-12 67.4
Msa0975540 MtrunA17_Chr4g0040691 30.070 143 98 2 302 442 255 397 1.31e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0975540 AT1G22400.1 43.026 423 210 8 2 420 8 403 1.31e-113 342
Msa0975540 AT1G22380.1 43.519 432 194 11 2 420 8 402 3.91e-113 341
Msa0975540 AT1G22360.1 42.691 431 195 9 4 420 7 399 1.39e-110 335
Msa0975540 AT1G22360.2 42.691 431 195 9 4 420 7 399 1.93e-110 334
Msa0975540 AT1G22340.1 41.705 434 200 10 2 420 8 403 3.74e-109 331
Msa0975540 AT1G22370.2 38.793 464 161 10 4 420 10 397 2.84e-86 272
Msa0975540 AT1G78270.1 35.118 467 183 11 2 420 8 402 3.80e-82 261
Msa0975540 AT1G22370.1 60.897 156 59 1 267 420 72 227 5.79e-66 214
Msa0975540 AT5G05900.1 30.493 446 243 13 7 442 8 396 9.22e-54 186
Msa0975540 AT5G05880.1 29.464 448 246 14 7 442 8 397 4.70e-53 184
Msa0975540 AT3G11340.1 29.139 453 246 14 3 443 5 394 3.22e-49 174
Msa0975540 AT3G46670.1 32.614 417 222 15 7 419 9 370 5.24e-49 173
Msa0975540 AT5G05890.1 28.947 456 242 14 7 442 8 401 6.06e-48 171
Msa0975540 AT5G38040.1 28.954 411 229 13 15 419 18 371 6.24e-46 165
Msa0975540 AT5G05860.1 30.000 450 237 13 7 439 9 397 2.98e-45 163
Msa0975540 AT5G38010.1 29.787 423 240 12 2 419 5 375 7.23e-45 162
Msa0975540 AT3G02100.1 30.496 423 236 17 4 420 10 380 6.52e-44 160
Msa0975540 AT5G59580.1 36.861 274 124 8 185 419 106 369 1.53e-43 159
Msa0975540 AT3G55700.1 30.549 419 221 16 9 416 10 369 1.70e-43 159
Msa0975540 AT2G28080.1 29.717 424 233 13 11 420 22 394 2.23e-43 159
Msa0975540 AT3G46650.1 35.798 257 133 7 185 419 108 354 2.81e-43 157
Msa0975540 AT5G59590.1 35.766 274 127 9 185 419 108 371 4.30e-43 157
Msa0975540 AT3G46680.1 33.333 318 154 10 150 419 64 371 4.62e-43 157
Msa0975540 AT3G46700.1 32.609 276 134 6 185 419 102 366 9.88e-43 156
Msa0975540 AT2G31750.1 26.603 421 251 11 4 420 5 371 1.88e-42 156
Msa0975540 AT2G31750.2 26.603 421 251 11 4 420 5 371 3.43e-42 156
Msa0975540 AT3G46660.1 33.818 275 133 6 185 419 112 377 2.63e-41 153
Msa0975540 AT3G46690.1 32.364 275 136 6 185 419 107 371 1.32e-40 150
Msa0975540 AT2G26480.1 28.538 431 219 13 7 419 8 367 2.61e-40 150
Msa0975540 AT4G01070.1 29.590 463 248 17 1 441 1 407 6.74e-40 149
Msa0975540 AT2G36790.1 29.493 434 235 16 7 420 13 395 2.44e-37 142
Msa0975540 AT3G46720.1 45.946 148 64 3 273 419 230 362 5.79e-37 140
Msa0975540 AT4G15550.1 26.376 436 238 14 6 418 12 387 7.07e-35 135
Msa0975540 AT5G05870.1 29.938 324 175 8 162 442 89 403 1.01e-34 135
Msa0975540 AT4G15490.1 29.730 296 159 9 184 436 114 403 1.07e-34 135
Msa0975540 AT2G15490.1 31.752 274 142 9 186 418 124 393 2.21e-34 134
Msa0975540 AT1G05675.1 28.345 441 258 14 7 440 6 395 4.49e-34 133
Msa0975540 AT5G66690.1 26.201 458 249 16 1 431 1 396 9.26e-34 132
Msa0975540 AT3G53160.1 27.635 427 252 16 7 420 8 390 1.00e-33 132
Msa0975540 AT2G15490.3 31.387 274 140 9 186 418 124 390 1.76e-33 132
Msa0975540 AT4G15480.1 32.384 281 131 9 184 418 126 393 2.38e-33 131
Msa0975540 AT3G16520.2 40.331 181 92 7 251 424 214 385 8.81e-33 129
Msa0975540 AT4G15500.1 29.740 269 153 6 184 418 111 377 8.88e-33 129
Msa0975540 AT3G22250.1 26.126 444 277 14 4 436 5 408 9.63e-33 129
Msa0975540 AT3G16520.1 41.436 181 90 7 251 424 214 385 1.10e-32 129
Msa0975540 AT3G16520.3 40.331 181 92 7 251 424 214 385 1.35e-32 129
Msa0975540 AT5G26310.1 26.039 457 251 16 1 431 1 396 1.37e-32 129
Msa0975540 AT3G55710.1 45.255 137 69 2 307 437 262 398 2.58e-32 128
Msa0975540 AT2G36970.1 41.722 151 74 4 273 420 252 391 2.60e-32 128
Msa0975540 AT2G36970.1 34.884 129 69 4 5 125 8 129 5.75e-12 67.8
Msa0975540 AT2G36780.1 30.686 277 151 8 183 420 122 396 2.65e-32 128
Msa0975540 AT1G01420.2 42.353 170 75 5 271 427 237 396 2.76e-32 128
Msa0975540 AT1G01420.1 42.353 170 75 5 271 427 234 393 2.86e-32 128
Msa0975540 AT2G36750.1 31.833 311 163 12 151 420 89 391 3.78e-32 128
Msa0975540 AT1G24100.1 27.143 420 246 13 5 418 9 374 8.21e-32 126
Msa0975540 AT2G36770.1 30.249 281 147 11 183 420 122 396 1.58e-31 126
Msa0975540 AT2G36760.1 29.433 282 148 9 183 420 122 396 1.84e-31 126
Msa0975540 AT2G15480.2 29.412 272 148 9 186 418 127 393 2.11e-31 126
Msa0975540 AT2G15480.1 29.412 272 148 9 186 418 127 393 2.83e-31 125
Msa0975540 AT2G36800.1 31.229 301 153 11 164 420 105 395 3.24e-31 125
Msa0975540 AT2G30140.1 27.840 449 252 15 2 442 4 388 3.47e-31 125
Msa0975540 AT5G37950.2 29.658 263 145 5 185 415 83 337 4.25e-31 122
Msa0975540 AT2G30140.2 27.617 449 252 15 2 442 4 387 5.27e-31 124
Msa0975540 AT1G01390.1 29.977 437 227 18 6 420 7 386 5.79e-31 124
Msa0975540 AT1G01390.2 29.977 437 227 18 6 420 24 403 7.25e-31 124
Msa0975540 AT4G34131.1 26.689 296 162 9 164 418 111 392 1.10e-30 124
Msa0975540 AT3G21560.1 29.044 272 151 7 184 418 121 387 2.68e-30 123
Msa0975540 AT5G37950.1 29.740 269 143 6 185 415 83 343 2.84e-30 120
Msa0975540 AT3G50740.1 34.574 188 93 3 273 443 239 413 8.56e-30 121
Msa0975540 AT3G53150.1 37.107 159 96 2 266 420 249 407 1.19e-29 121
Msa0975540 AT1G05680.1 29.642 307 170 9 149 418 72 369 1.43e-29 120
Msa0975540 AT5G03490.1 28.246 439 249 17 2 436 14 390 7.92e-29 118
Msa0975540 AT4G14090.1 27.664 441 258 16 5 441 11 394 1.09e-28 117
Msa0975540 AT4G34135.1 27.397 292 171 8 163 418 106 392 2.70e-28 117
Msa0975540 AT5G17050.1 28.571 287 152 9 185 435 117 386 7.14e-28 115
Msa0975540 AT2G23260.1 35.673 171 101 4 276 440 228 395 2.10e-27 114
Msa0975540 AT2G43820.1 27.855 359 207 15 97 418 19 362 7.88e-27 112
Msa0975540 AT5G14860.1 27.430 463 213 17 4 420 5 390 1.41e-26 112
Msa0975540 AT4G34138.1 30.292 274 138 10 187 418 131 393 2.34e-26 111
Msa0975540 AT2G29730.1 33.714 175 103 4 264 437 231 393 2.70e-26 111
Msa0975540 AT2G23250.1 28.041 296 160 11 187 440 93 377 5.55e-26 109
Msa0975540 AT1G10400.1 25.874 429 258 15 1 419 1 379 6.30e-26 110
Msa0975540 AT3G21790.1 26.537 309 168 6 173 432 102 400 1.39e-25 109
Msa0975540 AT1G07260.1 33.728 169 101 4 270 436 243 402 2.84e-25 108
Msa0975540 AT3G21780.1 28.440 327 171 11 156 432 78 391 4.70e-25 107
Msa0975540 AT4G15280.2 25.387 323 171 9 165 432 121 428 7.51e-25 107
Msa0975540 AT4G15280.1 25.387 323 171 9 165 432 89 396 7.62e-25 107
Msa0975540 AT4G15260.1 27.660 282 145 9 198 432 7 276 9.26e-25 105
Msa0975540 AT3G21760.1 25.926 324 180 9 159 432 90 403 1.11e-24 106
Msa0975540 AT5G49690.1 26.265 415 246 16 7 415 10 370 1.14e-24 106
Msa0975540 AT1G30530.1 27.875 287 152 8 185 435 113 380 1.25e-24 106
Msa0975540 AT2G29710.1 33.714 175 106 5 263 437 229 393 1.37e-24 106
Msa0975540 AT2G18560.1 42.742 124 61 3 307 420 169 292 5.56e-24 103
Msa0975540 AT1G07250.1 35.294 153 90 3 270 420 244 389 9.27e-24 103
Msa0975540 AT2G30150.2 26.214 309 170 8 148 420 81 367 9.85e-24 103
Msa0975540 AT2G30150.1 26.214 309 170 8 148 420 65 351 1.09e-23 103
Msa0975540 AT5G17030.1 37.255 153 85 3 268 420 236 377 1.35e-23 103
Msa0975540 AT2G31790.1 36.913 149 85 4 275 418 229 373 1.49e-23 103
Msa0975540 AT4G36770.1 37.838 148 75 3 305 437 253 398 1.53e-23 103
Msa0975540 AT3G21800.1 28.571 301 153 10 183 432 108 397 1.87e-23 102
Msa0975540 AT2G43840.2 27.671 365 200 18 97 418 19 362 2.24e-23 102
Msa0975540 AT5G17040.2 35.099 151 87 2 270 420 120 259 3.38e-23 100
Msa0975540 AT2G43840.1 27.072 362 206 17 97 418 19 362 4.13e-23 101
Msa0975540 AT5G17040.1 35.099 151 87 2 270 420 222 361 1.21e-22 100
Msa0975540 AT2G16890.3 43.966 116 58 3 306 418 269 380 2.17e-22 99.4
Msa0975540 AT2G16890.2 43.220 118 60 3 306 420 269 382 2.22e-22 99.8
Msa0975540 AT2G29740.1 33.987 153 90 3 270 420 248 391 2.29e-22 99.8
Msa0975540 AT2G29750.1 32.544 169 101 4 270 436 248 405 2.96e-22 99.4
Msa0975540 AT1G05560.2 38.017 121 67 1 308 420 301 421 3.74e-22 99.4
Msa0975540 AT1G73880.1 42.735 117 65 2 305 419 270 386 4.67e-22 98.6
Msa0975540 AT1G05560.1 38.017 121 67 1 308 420 251 371 4.81e-22 98.6
Msa0975540 AT1G07240.1 31.953 169 104 4 270 436 243 402 8.63e-22 98.2
Msa0975540 AT1G05530.1 37.190 121 68 1 308 420 254 374 1.56e-21 97.1
Msa0975540 AT1G51210.1 34.459 148 82 4 273 419 243 376 1.58e-21 96.7
Msa0975540 AT5G65550.1 24.249 433 259 14 1 418 1 379 1.77e-21 97.1
Msa0975540 AT3G21750.1 33.520 179 94 4 270 436 230 395 3.27e-21 96.3
Msa0975540 AT2G18570.1 34.810 158 80 6 273 420 238 382 9.55e-21 94.7
Msa0975540 AT5G12890.1 37.179 156 80 6 273 419 250 396 2.93e-20 93.6
Msa0975540 AT4G01070.2 28.075 374 204 16 1 365 1 318 3.02e-17 83.2
Msa0975540 AT1G06000.1 32.692 156 90 4 273 419 204 353 2.55e-13 72.0
Msa0975540 AT4G27570.1 31.405 121 77 3 302 418 244 362 1.50e-12 69.7
Msa0975540 AT5G53990.1 31.624 117 74 3 308 420 244 358 2.54e-12 68.9
Msa0975540 AT4G34135.2 24.889 225 130 6 163 352 106 326 3.54e-12 67.8
Msa0975540 AT5G54060.1 36.000 125 67 4 302 418 262 381 7.02e-12 67.8
Msa0975540 AT4G27560.1 30.579 121 78 3 302 418 244 362 7.56e-12 67.4
Msa0975540 AT2G22590.1 33.594 128 69 4 295 414 264 383 2.04e-11 66.2
Msa0975540 AT1G64910.1 32.479 117 73 3 308 420 244 358 4.87e-11 65.1

Find 87 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTAGTGCATCTTATTTCT+TGG 0.222380 6_4:+9319105 Msa0975540:CDS
TGATCTAACAAATGAATATT+TGG 0.230363 6_4:+9319439 Msa0975540:CDS
CATCTTTAGATTCTAATCTT+TGG 0.240223 6_4:+9319682 Msa0975540:CDS
CGGCCTAATGATCCACAAAA+AGG 0.250021 6_4:-9319844 None:intergenic
GCAAAACTTCTTCACCTTAG+AGG 0.288888 6_4:+9316507 Msa0975540:CDS
TCAGCAGCATCTACTGTAAA+TGG 0.295141 6_4:-9319049 None:intergenic
GTTTCAACAATGGATTGATA+TGG 0.324262 6_4:-9316482 None:intergenic
TCTGTTGTTTATGTAAATTT+TGG 0.338113 6_4:+9319753 Msa0975540:CDS
ATATGGCCTTGAACTGGATA+TGG 0.341554 6_4:-9316465 None:intergenic
CAAATATATCTGCAGTTTGC+CGG 0.342738 6_4:-9320076 None:intergenic
CATAGAGTTTGCTTGGGGTT+TGG 0.355983 6_4:+9319806 Msa0975540:CDS
TCATAAACTAAGCAAGTAAC+TGG 0.367424 6_4:-9316783 None:intergenic
CATGGGGAAAAGAGAACAAT+TGG 0.368444 6_4:-9319085 None:intergenic
TTGAAAGAAATTTCGAATAG+AGG 0.371393 6_4:+9319909 Msa0975540:CDS
TCAGAAACTAAGCAAGTAAC+TGG 0.372843 6_4:-9319016 None:intergenic
ATTTGCAATGAATGGGAGAT+TGG 0.385143 6_4:+9320094 Msa0975540:CDS
GCAGATATATTTGCAATGAA+TGG 0.393326 6_4:+9320086 Msa0975540:CDS
TGATTTACAAAAGAAGCTAA+TGG 0.400081 6_4:-9319639 None:intergenic
GATCTTGTCATTGGTGGCTC+AGG 0.401372 6_4:+9319867 Msa0975540:CDS
ATCTTGTCATTGGTGGCTCA+GGG 0.414641 6_4:+9319868 Msa0975540:CDS
GACCAGCAGTGAAAGATTCA+TGG 0.419021 6_4:-9316752 None:intergenic
CACAAATGATTACCTTTGAA+TGG 0.419380 6_4:-9319169 None:intergenic
GTGAGACCATCAAAGGCATT+TGG 0.423507 6_4:-9316591 None:intergenic
AGGTTATGTGAAATCCTCTA+AGG 0.427688 6_4:-9316521 None:intergenic
AGAGGTCCAAATGCCTTTGA+TGG 0.434564 6_4:+9316585 Msa0975540:CDS
ACCTTTGAGGCTATTCCTGA+TGG 0.440629 6_4:+9316621 Msa0975540:CDS
GAAGCTCATAGAGTTTGCTT+GGG 0.442460 6_4:+9319800 Msa0975540:CDS
AGAAGCTCATAGAGTTTGCT+TGG 0.447104 6_4:+9319799 Msa0975540:CDS
TTAATTCCATATCCAGTTCA+AGG 0.449656 6_4:+9316459 Msa0975540:CDS
AGTGAAAGATTCATGGAGTC+TGG 0.457702 6_4:-9316745 None:intergenic
CAGATATATTTGCAATGAAT+GGG 0.467213 6_4:+9320087 Msa0975540:CDS
TTCAGCAACTTGTATAGTAA+AGG 0.467651 6_4:-9316817 None:intergenic
TTACTTGCTTAGTTTATGAC+TGG 0.469984 6_4:+9316787 Msa0975540:CDS
CTCCATGAATCTTTCACTGC+TGG 0.473267 6_4:+9316750 Msa0975540:CDS
ATTAGGCCGGATCTTGTCAT+TGG 0.475587 6_4:+9319858 Msa0975540:CDS
TTTACATAAACAACAGATCC+TGG 0.477322 6_4:-9319747 None:intergenic
AGTCAAGACTTACACTCTCT+TGG 0.478475 6_4:+9318908 Msa0975540:CDS
GGATTGATATGGCCTTGAAC+TGG 0.479128 6_4:-9316471 None:intergenic
AGAAGTGGCGAAAGTTCGTT+AGG 0.479982 6_4:-9318940 None:intergenic
AAGATACTAAATGTCTTGAA+TGG 0.490321 6_4:+9319709 Msa0975540:CDS
GAGCCACCAATGACAAGATC+CGG 0.496086 6_4:-9319864 None:intergenic
AGGCCGGATCTTGTCATTGG+TGG 0.496844 6_4:+9319861 Msa0975540:CDS
TCCGCTGGAGTTAAACCATC+AGG 0.498285 6_4:-9316636 None:intergenic
AAGAAATAAGATGCACTACA+TGG 0.501608 6_4:-9319103 None:intergenic
CAAGAAGTTCGCGAAAGGGT+TGG 0.509862 6_4:-9316722 None:intergenic
GTTTCTTGACTCATTGCGGA+TGG 0.514817 6_4:+9319988 Msa0975540:CDS
ACCACTGAAAGCATATGTGC+TGG 0.528505 6_4:+9320017 Msa0975540:CDS
GGACCAATGGTGTATAGAGA+TGG 0.531896 6_4:-9319618 None:intergenic
TTTCCATCTCTATACACCAT+TGG 0.533975 6_4:+9319615 Msa0975540:CDS
CTTCAAGACTCTGCCACTGC+TGG 0.539683 6_4:+9318983 Msa0975540:CDS
CTGGAGTTCCAATGTTATGT+TGG 0.539995 6_4:+9320036 Msa0975540:CDS
AGAAATAAGATGCACTACAT+GGG 0.541324 6_4:-9319102 None:intergenic
TGGTTCAATACCTTCTCTTG+TGG 0.555029 6_4:-9319951 None:intergenic
TCCTGATGGTTTAACTCCAG+CGG 0.560000 6_4:+9316635 Msa0975540:CDS
ACCATCAGGAATAGCCTCAA+AGG 0.560833 6_4:-9316622 None:intergenic
TTAACTCCAGCGGATGGTGA+TGG 0.561023 6_4:+9316645 Msa0975540:CDS
GTCAAGAAACCACCGACTGA+AGG 0.562411 6_4:-9319975 None:intergenic
ATGGGGAAAAGAGAACAATT+GGG 0.563798 6_4:-9319084 None:intergenic
AATAGTCAACTACCATTCAA+AGG 0.564580 6_4:+9319157 Msa0975540:CDS
GAAGTTCGCGAAAGGGTTGG+AGG 0.566771 6_4:-9316719 None:intergenic
TCTGGCAAGAAGTTCGCGAA+AGG 0.572438 6_4:-9316727 None:intergenic
TTGAACCACCCTTCAGTCGG+TGG 0.572803 6_4:+9319966 Msa0975540:CDS
CAAGTAGTTCATCAAAGAAG+TGG 0.575543 6_4:-9318955 None:intergenic
ACATCGCCATCACCATCCGC+TGG 0.577138 6_4:-9316651 None:intergenic
AAGTTGGTGTCCACAAGAGA+AGG 0.585107 6_4:+9319941 Msa0975540:CDS
CTGGCAAGAAGTTCGCGAAA+GGG 0.585222 6_4:-9316726 None:intergenic
TCAAGAAACCACCGACTGAA+GGG 0.587387 6_4:-9319974 None:intergenic
AAAAGAAGCTAATGGACCAA+TGG 0.589223 6_4:-9319631 None:intergenic
GGTGGTTTCTTGACTCATTG+CGG 0.591896 6_4:+9319984 Msa0975540:CDS
TTTGTATTCAGTGTTTACAA+AGG 0.597303 6_4:-9316541 None:intergenic
TATGGAATTAACACAGCATG+TGG 0.602812 6_4:-9316447 None:intergenic
AAAATCTGTGAGACCATCAA+AGG 0.606621 6_4:-9316598 None:intergenic
AAACGTTTGCTCAAATCAAG+AGG 0.612743 6_4:+9316567 Msa0975540:CDS
TGGCTTGAATCAAAAGAACC+AGG 0.620827 6_4:+9319729 Msa0975540:CDS
TCCAGCACATATGCTTTCAG+TGG 0.624115 6_4:-9320018 None:intergenic
TAAACTAAGCAAGTAACTGG+AGG 0.624984 6_4:-9316780 None:intergenic
GAAACTAAGCAAGTAACTGG+AGG 0.624984 6_4:-9319013 None:intergenic
AAACTAAGCAAGTAACTGGA+GGG 0.625013 6_4:-9316779 None:intergenic
AAACTAAGCAAGTAACTGGA+GGG 0.625013 6_4:-9319012 None:intergenic
GAAATAAGATGCACTACATG+GGG 0.626515 6_4:-9319101 None:intergenic
TGGAGGGATAAGACCAGCAG+TGG 0.631182 6_4:-9318996 None:intergenic
AAGCTCATAGAGTTTGCTTG+GGG 0.632034 6_4:+9319801 Msa0975540:CDS
ATAGAGGACTAGTAGCAAGT+TGG 0.646379 6_4:+9319925 Msa0975540:CDS
GATGGTTTAACTCCAGCGGA+TGG 0.652236 6_4:+9316639 Msa0975540:CDS
TCTTGTCATTGGTGGCTCAG+GGG 0.658307 6_4:+9319869 Msa0975540:CDS
GTATTGAACCACCCTTCAGT+CGG 0.676579 6_4:+9319963 Msa0975540:CDS
AGAAACCACCGACTGAAGGG+TGG 0.702609 6_4:-9319971 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAAAATAATATTTTTAA+AGG - chr6_4:9317732-9317751 None:intergenic 0.0%
!!! TTATTTGTATTTAAAATTGA+CGG - chr6_4:9317110-9317129 None:intergenic 10.0%
!!! TTTATTTTTTGTTATATTGT+TGG + chr6_4:9317448-9317467 Msa0975540:intron 10.0%
!!! TATATTTTTTGTTATATTGT+TGG - chr6_4:9318013-9318032 None:intergenic 10.0%
!!! ACATTTTCTATATATAATAA+AGG - chr6_4:9318073-9318092 None:intergenic 10.0%
!!! TATTTCTTTTATATATAGTA+GGG + chr6_4:9318331-9318350 Msa0975540:intron 10.0%
!! AAATAAAAAAAAAATTACAG+GGG - chr6_4:9318405-9318424 None:intergenic 10.0%
!! GTAAATAAAAAAAAAATTAC+AGG - chr6_4:9318407-9318426 None:intergenic 10.0%
!! ATATGAAAAAAATTGTTTAA+GGG - chr6_4:9318689-9318708 None:intergenic 10.0%
!! AATATGAAAAAAATTGTTTA+AGG - chr6_4:9318690-9318709 None:intergenic 10.0%
!!! ATATCCATTATCTTTTTTAA+AGG - chr6_4:9317195-9317214 None:intergenic 15.0%
!! ATGGATATAGAATTAAATTT+AGG + chr6_4:9317207-9317226 Msa0975540:intron 15.0%
!! AAAATATAAAGAAAAAAAGC+TGG - chr6_4:9317267-9317286 None:intergenic 15.0%
!!! TATATAGAAAATGTTGTTTA+AGG + chr6_4:9318079-9318098 Msa0975540:intron 15.0%
!!! ATATAGAAAATGTTGTTTAA+GGG + chr6_4:9318080-9318099 Msa0975540:intron 15.0%
!!! TTTCACTTTTTAAATGATAA+AGG + chr6_4:9318151-9318170 Msa0975540:intron 15.0%
!! AAATGATAAAGGAAAAAAAT+AGG + chr6_4:9318162-9318181 Msa0975540:intron 15.0%
!!! CTATTTCTTTTATATATAGT+AGG + chr6_4:9318330-9318349 Msa0975540:intron 15.0%
!! AATAAAAAAAAAATTACAGG+GGG - chr6_4:9318404-9318423 None:intergenic 15.0%
!! AAAACAAAACAAAATTACAT+GGG - chr6_4:9318431-9318450 None:intergenic 15.0%
!!! AAATAAAATTGGTTTTTGTT+TGG - chr6_4:9318473-9318492 None:intergenic 15.0%
!!! AAAAAATTTTCGTTTTTGTT+TGG + chr6_4:9318500-9318519 Msa0975540:intron 15.0%
!!! TCAAAACAATTTTTTTTTAC+AGG + chr6_4:9318540-9318559 Msa0975540:intron 15.0%
!!! CAAAACAATTTTTTTTTACA+GGG + chr6_4:9318541-9318560 Msa0975540:intron 15.0%
!!! AAAACAATTTTTTTTTACAG+GGG + chr6_4:9318542-9318561 Msa0975540:intron 15.0%
!! GTAAATCAAAAAAAAATTAC+AGG + chr6_4:9318565-9318584 Msa0975540:intron 15.0%
!!! TATGTTATGGTTTTTAAAAA+AGG + chr6_4:9319233-9319252 Msa0975540:intron 15.0%
!! TCATGTATAAATATATATCA+TGG - chr6_4:9319376-9319395 None:intergenic 15.0%
!!! ATAAAGAAAATAGTCTCTTT+TGG + chr6_4:9317049-9317068 Msa0975540:intron 20.0%
!!! TTTAAAATTGACGGTAATTT+GGG - chr6_4:9317101-9317120 None:intergenic 20.0%
!!! ATTTAAAATTGACGGTAATT+TGG - chr6_4:9317102-9317121 None:intergenic 20.0%
!!! TTATCTTTTTTAAAGGATGA+AGG - chr6_4:9317188-9317207 None:intergenic 20.0%
!!! TCATCCTTTAAAAAAGATAA+TGG + chr6_4:9317188-9317207 Msa0975540:intron 20.0%
!! TCTATAATAATGATTGTTGT+TGG + chr6_4:9317398-9317417 Msa0975540:intron 20.0%
!! GTTTAAATAAAGGGTAAAAT+AGG - chr6_4:9317689-9317708 None:intergenic 20.0%
!! AATATTGTTCATATTGTAGT+GGG - chr6_4:9317794-9317813 None:intergenic 20.0%
!! TAATATTGTTCATATTGTAG+TGG - chr6_4:9317795-9317814 None:intergenic 20.0%
!! TATATAATAAAGGTTGTTGT+TGG - chr6_4:9318063-9318082 None:intergenic 20.0%
!!! CTATTTGTTTTGAAAATTGA+AGG + chr6_4:9318262-9318281 Msa0975540:intron 20.0%
!! ATAAAAAAAAAATTACAGGG+GGG - chr6_4:9318403-9318422 None:intergenic 20.0%
!! AAACAAAACAAAATTACATG+GGG - chr6_4:9318430-9318449 None:intergenic 20.0%
!! CAAAACAAAACAAAATTACA+TGG - chr6_4:9318432-9318451 None:intergenic 20.0%
!!! AAACAATTTTTTTTTACAGG+GGG + chr6_4:9318543-9318562 Msa0975540:intron 20.0%
!! AATCAAAAAAAAATTACAGG+AGG + chr6_4:9318568-9318587 Msa0975540:intron 20.0%
!! ATCAAAAAAAAATTACAGGA+GGG + chr6_4:9318569-9318588 Msa0975540:intron 20.0%
!! TCATATTAATGTTACATTGT+TGG + chr6_4:9318703-9318722 Msa0975540:intron 20.0%
!! CAAATTTCTTAAGAAGAAAA+AGG - chr6_4:9319197-9319216 None:intergenic 20.0%
!! TGATCTAACAAATGAATATT+TGG + chr6_4:9319439-9319458 Msa0975540:CDS 20.0%
!!! AAAAACTTGATGATAAGATT+TGG + chr6_4:9319491-9319510 Msa0975540:CDS 20.0%
!!! TCTGTTGTTTATGTAAATTT+TGG + chr6_4:9319753-9319772 Msa0975540:CDS 20.0%
! TTTGTATTCAGTGTTTACAA+AGG - chr6_4:9316544-9316563 None:intergenic 25.0%
! TTACGTACATTGTTAGATAA+AGG + chr6_4:9316906-9316925 Msa0975540:intron 25.0%
!! GATTAAATGTTACCTTTTAG+TGG - chr6_4:9316939-9316958 None:intergenic 25.0%
!!! TTTTTAAAGGATGAAGGATA+AGG - chr6_4:9317182-9317201 None:intergenic 25.0%
!!! GTGGGTATTTTCTATTTTAA+TGG - chr6_4:9317776-9317795 None:intergenic 25.0%
!! ATAGATAATCATGGTTAGTT+TGG - chr6_4:9317980-9317999 None:intergenic 25.0%
! GTCATTGAAATAGATAATCA+TGG - chr6_4:9317989-9318008 None:intergenic 25.0%
!! ATGTTGTTTAAGGGTATAAT+TGG + chr6_4:9318089-9318108 Msa0975540:intron 25.0%
!! TTATATATAGTAGGGTTGAT+AGG + chr6_4:9318339-9318358 Msa0975540:intron 25.0%
! AACAAAACAAAATTACATGG+GGG - chr6_4:9318429-9318448 None:intergenic 25.0%
! TATTAATGTTACATTGTTGG+TGG + chr6_4:9318706-9318725 Msa0975540:intron 25.0%
!! TGACTATTCTGATACATTTT+AGG - chr6_4:9319145-9319164 None:intergenic 25.0%
!!! TGGTTTTTAAAAAAGGTTTG+CGG + chr6_4:9319240-9319259 Msa0975540:intron 25.0%
!! CACGTTTGCAATAATAATTT+TGG - chr6_4:9319345-9319364 None:intergenic 25.0%
! TGATTTACAAAAGAAGCTAA+TGG - chr6_4:9319642-9319661 None:intergenic 25.0%
! CATCTTTAGATTCTAATCTT+TGG + chr6_4:9319682-9319701 Msa0975540:CDS 25.0%
! AAGATACTAAATGTCTTGAA+TGG + chr6_4:9319709-9319728 Msa0975540:CDS 25.0%
! TTGAAAGAAATTTCGAATAG+AGG + chr6_4:9319909-9319928 Msa0975540:CDS 25.0%
! CAGATATATTTGCAATGAAT+GGG + chr6_4:9320087-9320106 Msa0975540:CDS 25.0%
TTAATTCCATATCCAGTTCA+AGG + chr6_4:9316459-9316478 Msa0975540:CDS 30.0%
!! GTTTCAACAATGGATTGATA+TGG - chr6_4:9316485-9316504 None:intergenic 30.0%
!! AGTTTTGCTAGTTTCAACAA+TGG - chr6_4:9316495-9316514 None:intergenic 30.0%
TCATAAACTAAGCAAGTAAC+TGG - chr6_4:9316786-9316805 None:intergenic 30.0%
TTACTTGCTTAGTTTATGAC+TGG + chr6_4:9316787-9316806 Msa0975540:CDS 30.0%
TTCAGCAACTTGTATAGTAA+AGG - chr6_4:9316820-9316839 None:intergenic 30.0%
AAAAATGTACATGCATTGGA+TGG - chr6_4:9316873-9316892 None:intergenic 30.0%
AGTCAAAAATGTACATGCAT+TGG - chr6_4:9316877-9316896 None:intergenic 30.0%
ACGTTAGCGTAATAAAAAGA+GGG - chr6_4:9317867-9317886 None:intergenic 30.0%
AACGTTAGCGTAATAAAAAG+AGG - chr6_4:9317868-9317887 None:intergenic 30.0%
!!! TAGCATGTTTTGACTCTTTT+GGG - chr6_4:9318313-9318332 None:intergenic 30.0%
!!! ATAGCATGTTTTGACTCTTT+TGG - chr6_4:9318314-9318333 None:intergenic 30.0%
TAAATGACCTATATTACAGG+GGG - chr6_4:9318373-9318392 None:intergenic 30.0%
GTAAATGACCTATATTACAG+GGG - chr6_4:9318374-9318393 None:intergenic 30.0%
CGTAAATGACCTATATTACA+GGG - chr6_4:9318375-9318394 None:intergenic 30.0%
CCTGTAATATAGGTCATTTA+CGG + chr6_4:9318373-9318392 Msa0975540:intron 30.0%
!! TTTTTGTTTGGCTTATTAGG+GGG - chr6_4:9318461-9318480 None:intergenic 30.0%
!! GTTTTTGTTTGGCTTATTAG+GGG - chr6_4:9318462-9318481 None:intergenic 30.0%
!! GGTTTTTGTTTGGCTTATTA+GGG - chr6_4:9318463-9318482 None:intergenic 30.0%
!! TGGTTTTTGTTTGGCTTATT+AGG - chr6_4:9318464-9318483 None:intergenic 30.0%
TGGAAATGACCTATATTACA+GGG + chr6_4:9318597-9318616 Msa0975540:intron 30.0%
! ATGAAGGGGATAGATATTTT+TGG + chr6_4:9318642-9318661 Msa0975540:intron 30.0%
AGAAATAAGATGCACTACAT+GGG - chr6_4:9319105-9319124 None:intergenic 30.0%
AAGAAATAAGATGCACTACA+TGG - chr6_4:9319106-9319125 None:intergenic 30.0%
! ATGTAGTGCATCTTATTTCT+TGG + chr6_4:9319105-9319124 Msa0975540:CDS 30.0%
AATAGTCAACTACCATTCAA+AGG + chr6_4:9319157-9319176 Msa0975540:CDS 30.0%
CACAAATGATTACCTTTGAA+TGG - chr6_4:9319172-9319191 None:intergenic 30.0%
!! GTGTTTTTGTGTGTATGTTA+TGG + chr6_4:9319220-9319239 Msa0975540:intron 30.0%
CATATAATCCCAATCAAATG+TGG - chr6_4:9319300-9319319 None:intergenic 30.0%
ATTTGGACACAAAAATTGAC+TGG + chr6_4:9319456-9319475 Msa0975540:CDS 30.0%
! AGTATTGAATACAATACCAG+AGG - chr6_4:9319550-9319569 None:intergenic 30.0%
! AAAGATGTCAAGTGATTTTG+TGG - chr6_4:9319669-9319688 None:intergenic 30.0%
TTTACATAAACAACAGATCC+TGG - chr6_4:9319750-9319769 None:intergenic 30.0%
AAAAATGGCCAACATAACAT+TGG - chr6_4:9320047-9320066 None:intergenic 30.0%
!!! TGTTATGTTGGCCATTTTTT+CGG + chr6_4:9320048-9320067 Msa0975540:CDS 30.0%
GCAGATATATTTGCAATGAA+TGG + chr6_4:9320086-9320105 Msa0975540:CDS 30.0%
TATGGAATTAACACAGCATG+TGG - chr6_4:9316450-9316469 None:intergenic 35.0%
AGGTTATGTGAAATCCTCTA+AGG - chr6_4:9316524-9316543 None:intergenic 35.0%
AAACGTTTGCTCAAATCAAG+AGG + chr6_4:9316567-9316586 Msa0975540:CDS 35.0%
AAAATCTGTGAGACCATCAA+AGG - chr6_4:9316601-9316620 None:intergenic 35.0%
! TCTCACAGATTTTACCTTTG+AGG + chr6_4:9316608-9316627 Msa0975540:CDS 35.0%
AAACTAAGCAAGTAACTGGA+GGG - chr6_4:9316782-9316801 None:intergenic 35.0%
TAAACTAAGCAAGTAACTGG+AGG - chr6_4:9316783-9316802 None:intergenic 35.0%
! ATGGACTAAAGAGAACAACA+TGG - chr6_4:9316854-9316873 None:intergenic 35.0%
AAAGGTCTCATACCACTAAA+AGG + chr6_4:9316924-9316943 Msa0975540:intron 35.0%
! ATAGTCTCTTTTGGTCCTTT+TGG + chr6_4:9317058-9317077 Msa0975540:intron 35.0%
AAATTGACGGTAATTTGGGA+TGG - chr6_4:9317097-9317116 None:intergenic 35.0%
TTTAGCGCAATAAAAAGAGC+AGG + chr6_4:9317596-9317615 Msa0975540:intron 35.0%
CAAAAAACAAGCTCAAACAC+AGG - chr6_4:9317662-9317681 None:intergenic 35.0%
GTTATACACTAGCGAAAAGA+CGG + chr6_4:9317820-9317839 Msa0975540:intron 35.0%
TTATACACTAGCGAAAAGAC+GGG + chr6_4:9317821-9317840 Msa0975540:intron 35.0%
AATAAAAAGAGGGGAAAGAC+AGG - chr6_4:9317857-9317876 None:intergenic 35.0%
CGTTAGCGTAATAAAAAGAG+GGG - chr6_4:9317866-9317885 None:intergenic 35.0%
!!! ATGTTTTGACTCTTTTGGGT+TGG - chr6_4:9318309-9318328 None:intergenic 35.0%
AAATGACCTATATTACAGGG+GGG - chr6_4:9318600-9318619 None:intergenic 35.0%
CCGTAAATGACCTATATTAC+AGG - chr6_4:9318376-9318395 None:intergenic 35.0%
!! TTTTGTTTGGCTTATTAGGG+GGG - chr6_4:9318460-9318479 None:intergenic 35.0%
!! TCGTTTTTGTTTGGCCTATT+AGG + chr6_4:9318509-9318528 Msa0975540:intron 35.0%
!! CGTTTTTGTTTGGCCTATTA+GGG + chr6_4:9318510-9318529 Msa0975540:intron 35.0%
!! GTTTTTGTTTGGCCTATTAG+GGG + chr6_4:9318511-9318530 Msa0975540:intron 35.0%
!! TTTTTGTTTGGCCTATTAGG+GGG + chr6_4:9318512-9318531 Msa0975540:intron 35.0%
!!! TTTTGATTTACCCCCCTAAT+AGG - chr6_4:9318447-9318466 None:intergenic 35.0%
AAAATTACAGGAGGGAAAAC+TGG + chr6_4:9318577-9318596 Msa0975540:intron 35.0%
CTGGAAATGACCTATATTAC+AGG + chr6_4:9318596-9318615 Msa0975540:intron 35.0%
GGAAATGACCTATATTACAG+GGG + chr6_4:9318598-9318617 Msa0975540:intron 35.0%
GAAATGACCTATATTACAGG+GGG + chr6_4:9318599-9318618 Msa0975540:intron 35.0%
ACCTATTAACCCTAGATGAA+GGG + chr6_4:9318627-9318646 Msa0975540:intron 35.0%
ATATCTATCCCCTTCATCTA+GGG - chr6_4:9318639-9318658 None:intergenic 35.0%
AATATCTATCCCCTTCATCT+AGG - chr6_4:9318640-9318659 None:intergenic 35.0%
CAAGTAGTTCATCAAAGAAG+TGG - chr6_4:9318958-9318977 None:intergenic 35.0%
AAACTAAGCAAGTAACTGGA+GGG - chr6_4:9316782-9316801 None:intergenic 35.0%
TCAGAAACTAAGCAAGTAAC+TGG - chr6_4:9319019-9319038 None:intergenic 35.0%
ATGGGGAAAAGAGAACAATT+GGG - chr6_4:9319087-9319106 None:intergenic 35.0%
GAAATAAGATGCACTACATG+GGG - chr6_4:9319104-9319123 None:intergenic 35.0%
ACAAAAATTGACTGGATCTC+TGG + chr6_4:9319464-9319483 Msa0975540:CDS 35.0%
TTTCCATCTCTATACACCAT+TGG + chr6_4:9319615-9319634 Msa0975540:CDS 35.0%
! AAAAGAAGCTAATGGACCAA+TGG - chr6_4:9319634-9319653 None:intergenic 35.0%
! ATAGCAAGAAACCCTTTTTG+TGG + chr6_4:9319832-9319851 Msa0975540:CDS 35.0%
! AACCCTTTTTGTGGATCATT+AGG + chr6_4:9319841-9319860 Msa0975540:CDS 35.0%
CAAATATATCTGCAGTTTGC+CGG - chr6_4:9320079-9320098 None:intergenic 35.0%
ATTTGCAATGAATGGGAGAT+TGG + chr6_4:9320094-9320113 Msa0975540:CDS 35.0%
! ATATGGCCTTGAACTGGATA+TGG - chr6_4:9316468-9316487 None:intergenic 40.0%
GCAAAACTTCTTCACCTTAG+AGG + chr6_4:9316507-9316526 Msa0975540:CDS 40.0%
AGTGAAAGATTCATGGAGTC+TGG - chr6_4:9316748-9316767 None:intergenic 40.0%
! TTTTACCCCCCCTGTAATAT+AGG + chr6_4:9318363-9318382 Msa0975540:intron 40.0%
AATGACCTATATTACAGGGG+GGG - chr6_4:9318601-9318620 None:intergenic 40.0%
!! TTTTGTTTGGCCTATTAGGG+GGG + chr6_4:9318513-9318532 Msa0975540:intron 40.0%
GTCTTTACCCCCTGTAATAT+AGG - chr6_4:9318609-9318628 None:intergenic 40.0%
GACCTATTAACCCTAGATGA+AGG + chr6_4:9318626-9318645 Msa0975540:intron 40.0%
CCTATTAACCCTAGATGAAG+GGG + chr6_4:9318628-9318647 Msa0975540:intron 40.0%
AGTCAAGACTTACACTCTCT+TGG + chr6_4:9318908-9318927 Msa0975540:CDS 40.0%
GAAACTAAGCAAGTAACTGG+AGG - chr6_4:9319016-9319035 None:intergenic 40.0%
TCAGCAGCATCTACTGTAAA+TGG - chr6_4:9319052-9319071 None:intergenic 40.0%
CATGGGGAAAAGAGAACAAT+TGG - chr6_4:9319088-9319107 None:intergenic 40.0%
AAAGGTTTGCGGTCACAATA+TGG + chr6_4:9319251-9319270 Msa0975540:intron 40.0%
AAGGTTTGCGGTCACAATAT+GGG + chr6_4:9319252-9319271 Msa0975540:intron 40.0%
GCTGATGCAACGTTTATGTT+CGG - chr6_4:9319278-9319297 None:intergenic 40.0%
TTGCATCAGCCACATTTGAT+TGG + chr6_4:9319288-9319307 Msa0975540:intron 40.0%
TGCATCAGCCACATTTGATT+GGG + chr6_4:9319289-9319308 Msa0975540:intron 40.0%
! GATAAGATTTGGCACTGAAG+TGG + chr6_4:9319502-9319521 Msa0975540:intron 40.0%
AATGTCAAACAAAGAGCCTC+TGG + chr6_4:9319531-9319550 Msa0975540:intron 40.0%
TGGCTTGAATCAAAAGAACC+AGG + chr6_4:9319729-9319748 Msa0975540:CDS 40.0%
! AGAAGCTCATAGAGTTTGCT+TGG + chr6_4:9319799-9319818 Msa0975540:CDS 40.0%
! GAAGCTCATAGAGTTTGCTT+GGG + chr6_4:9319800-9319819 Msa0975540:CDS 40.0%
! AAGCTCATAGAGTTTGCTTG+GGG + chr6_4:9319801-9319820 Msa0975540:CDS 40.0%
GGCCTAATGATCCACAAAAA+GGG - chr6_4:9319846-9319865 None:intergenic 40.0%
! CTTTTTGTGGATCATTAGGC+CGG + chr6_4:9319845-9319864 Msa0975540:CDS 40.0%
! ATAGAGGACTAGTAGCAAGT+TGG + chr6_4:9319925-9319944 Msa0975540:CDS 40.0%
TGGTTCAATACCTTCTCTTG+TGG - chr6_4:9319954-9319973 None:intergenic 40.0%
CTGGAGTTCCAATGTTATGT+TGG + chr6_4:9320036-9320055 Msa0975540:CDS 40.0%
! GGATTGATATGGCCTTGAAC+TGG - chr6_4:9316474-9316493 None:intergenic 45.0%
AGAGGTCCAAATGCCTTTGA+TGG + chr6_4:9316585-9316604 Msa0975540:CDS 45.0%
!! GTGAGACCATCAAAGGCATT+TGG - chr6_4:9316594-9316613 None:intergenic 45.0%
!! ACCTTTGAGGCTATTCCTGA+TGG + chr6_4:9316621-9316640 Msa0975540:CDS 45.0%
ACCATCAGGAATAGCCTCAA+AGG - chr6_4:9316625-9316644 None:intergenic 45.0%
TCCTGATGGTTTAACTCCAG+CGG + chr6_4:9316635-9316654 Msa0975540:CDS 45.0%
CTCCATGAATCTTTCACTGC+TGG + chr6_4:9316750-9316769 Msa0975540:CDS 45.0%
GACCAGCAGTGAAAGATTCA+TGG - chr6_4:9316755-9316774 None:intergenic 45.0%
GGCGAAAAAGTCAGTCCAAA+AGG - chr6_4:9317076-9317095 None:intergenic 45.0%
! CCCCTTCATCTAGGGTTAAT+AGG - chr6_4:9318631-9318650 None:intergenic 45.0%
ACATCACCATCACCATCCTT+TGG - chr6_4:9318887-9318906 None:intergenic 45.0%
AGAAGTGGCGAAAGTTCGTT+AGG - chr6_4:9318943-9318962 None:intergenic 45.0%
GGACCAATGGTGTATAGAGA+TGG - chr6_4:9319621-9319640 None:intergenic 45.0%
! CATAGAGTTTGCTTGGGGTT+TGG + chr6_4:9319806-9319825 Msa0975540:CDS 45.0%
CGGCCTAATGATCCACAAAA+AGG - chr6_4:9319847-9319866 None:intergenic 45.0%
ATTAGGCCGGATCTTGTCAT+TGG + chr6_4:9319858-9319877 Msa0975540:CDS 45.0%
! ATCTTGTCATTGGTGGCTCA+GGG + chr6_4:9319868-9319887 Msa0975540:CDS 45.0%
!! AAGTTGGTGTCCACAAGAGA+AGG + chr6_4:9319941-9319960 Msa0975540:CDS 45.0%
GTATTGAACCACCCTTCAGT+CGG + chr6_4:9319963-9319982 Msa0975540:CDS 45.0%
! TCAAGAAACCACCGACTGAA+GGG - chr6_4:9319977-9319996 None:intergenic 45.0%
GGTGGTTTCTTGACTCATTG+CGG + chr6_4:9319984-9320003 Msa0975540:CDS 45.0%
GTTTCTTGACTCATTGCGGA+TGG + chr6_4:9319988-9320007 Msa0975540:CDS 45.0%
! ACCACTGAAAGCATATGTGC+TGG + chr6_4:9320017-9320036 Msa0975540:CDS 45.0%
TCCAGCACATATGCTTTCAG+TGG - chr6_4:9320021-9320040 None:intergenic 45.0%
!! AATAAAATAGTTTAAATAAA+GGG - chr6_4:9317698-9317717 None:intergenic 5.0%
!! AAATAAAATAGTTTAAATAA+AGG - chr6_4:9317699-9317718 None:intergenic 5.0%
!! TAAATAAAAAAAAAATTACA+GGG - chr6_4:9318406-9318425 None:intergenic 5.0%
!!! TTTTGAAAAAAAAATAAAAT+TGG - chr6_4:9318484-9318503 None:intergenic 5.0%
TCCGCTGGAGTTAAACCATC+AGG - chr6_4:9316639-9316658 None:intergenic 50.0%
GATGGTTTAACTCCAGCGGA+TGG + chr6_4:9316639-9316658 Msa0975540:CDS 50.0%
TTAACTCCAGCGGATGGTGA+TGG + chr6_4:9316645-9316664 Msa0975540:CDS 50.0%
CAAGAAGTTCGCGAAAGGGT+TGG - chr6_4:9316725-9316744 None:intergenic 50.0%
CTGGCAAGAAGTTCGCGAAA+GGG - chr6_4:9316729-9316748 None:intergenic 50.0%
TCTGGCAAGAAGTTCGCGAA+AGG - chr6_4:9316730-9316749 None:intergenic 50.0%
GAGCCACCAATGACAAGATC+CGG - chr6_4:9319867-9319886 None:intergenic 50.0%
! GATCTTGTCATTGGTGGCTC+AGG + chr6_4:9319867-9319886 Msa0975540:CDS 50.0%
! TCTTGTCATTGGTGGCTCAG+GGG + chr6_4:9319869-9319888 Msa0975540:CDS 50.0%
! GTCAAGAAACCACCGACTGA+AGG - chr6_4:9319978-9319997 None:intergenic 50.0%
!!! GGCCATTTTTTCGGATCAGC+CGG + chr6_4:9320057-9320076 Msa0975540:CDS 50.0%
! TGCCGGCTGATCCGAAAAAA+TGG - chr6_4:9320062-9320081 None:intergenic 50.0%
GAAGTTCGCGAAAGGGTTGG+AGG - chr6_4:9316722-9316741 None:intergenic 55.0%
CTTCAAGACTCTGCCACTGC+TGG + chr6_4:9318983-9319002 Msa0975540:CDS 55.0%
TGGAGGGATAAGACCAGCAG+TGG - chr6_4:9316766-9316785 None:intergenic 55.0%
AGGCCGGATCTTGTCATTGG+TGG + chr6_4:9319861-9319880 Msa0975540:CDS 55.0%
TTGAACCACCCTTCAGTCGG+TGG + chr6_4:9319966-9319985 Msa0975540:CDS 55.0%
! AGAAACCACCGACTGAAGGG+TGG - chr6_4:9319974-9319993 None:intergenic 55.0%
ACATCGCCATCACCATCCGC+TGG - chr6_4:9316654-9316673 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 9316432 9320139 9316432 ID=Msa0975540;Name=Msa0975540
chr6_4 mRNA 9316432 9320139 9316432 ID=Msa0975540-mRNA-1;Parent=Msa0975540;Name=Msa0975540-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|1|1|4|0|443
chr6_4 exon 9316432 9316854 9316432 ID=Msa0975540-mRNA-1:exon:3345;Parent=Msa0975540-mRNA-1
chr6_4 exon 9318890 9319178 9318890 ID=Msa0975540-mRNA-1:exon:3346;Parent=Msa0975540-mRNA-1
chr6_4 exon 9319432 9319520 9319432 ID=Msa0975540-mRNA-1:exon:3347;Parent=Msa0975540-mRNA-1
chr6_4 exon 9319609 9320139 9319609 ID=Msa0975540-mRNA-1:exon:3348;Parent=Msa0975540-mRNA-1
chr6_4 CDS 9316432 9316854 9316432 ID=Msa0975540-mRNA-1:cds;Parent=Msa0975540-mRNA-1
chr6_4 CDS 9318890 9319178 9318890 ID=Msa0975540-mRNA-1:cds;Parent=Msa0975540-mRNA-1
chr6_4 CDS 9319432 9319520 9319432 ID=Msa0975540-mRNA-1:cds;Parent=Msa0975540-mRNA-1
chr6_4 CDS 9319609 9320139 9319609 ID=Msa0975540-mRNA-1:cds;Parent=Msa0975540-mRNA-1
Gene Sequence

>Msa0975540

ATGAATGATTCAAAACCACATGCTGTGTTAATTCCATATCCAGTTCAAGGCCATATCAATCCATTGTTGAAACTAGCAAAACTTCTTCACCTTAGAGGATTTCACATAACCTTTGTAAACACTGAATACAAACACAAACGTTTGCTCAAATCAAGAGGTCCAAATGCCTTTGATGGTCTCACAGATTTTACCTTTGAGGCTATTCCTGATGGTTTAACTCCAGCGGATGGTGATGGCGATGTTAGTCAAGACATACGCGCTCTTTGTAAATCAATCAGAAAGAACTTCCTCCAACCCTTTCGCGAACTTCTTGCCAGACTCCATGAATCTTTCACTGCTGGTCTTATCCCTCCAGTTACTTGCTTAGTTTATGACTGGAACATGTCCTTTACTATACAAGTTGCTGAAGAACTTTCACTCCATGATGGTGATGGTGATGTTAGTCAAGACTTACACTCTCTTGGTGAATCAATCCTAACGAACTTTCGCCACTTCTTTGATGAACTACTTGCTAAACTTCAAGACTCTGCCACTGCTGGTCTTATCCCTCCAGTTACTTGCTTAGTTTCTGATTGCTACATGCCATTTACAGTAGATGCTGCTGAAGAACATACACTCCCAATTGTTCTCTTTTCCCCATGTAGTGCATCTTATTTCTTGGCTTGTTTGCTCAATCCTAAAATGTATCAGAATAGTCAACTACCATTCAAAGATGAAAGTGATCTAACAAATGAATATTTGGACACAAAAATTGACTGGATCTCTGGTTTGAAAAACTTGATGATAAGATTTGGCACTGAATCTATGTTTCCATCTCTATACACCATTGGTCCATTAGCTTCTTTTGTAAATCAAAGTCCACAAAATCACTTGACATCTTTAGATTCTAATCTTTGGAAAGAAGATACTAAATGTCTTGAATGGCTTGAATCAAAAGAACCAGGATCTGTTGTTTATGTAAATTTTGGCAGCATCACTGTTATGTCTCGAGAGAAGCTCATAGAGTTTGCTTGGGGTTTGGCAAATAGCAAGAAACCCTTTTTGTGGATCATTAGGCCGGATCTTGTCATTGGTGGCTCAGGGGTTTTCTCATCTGATTTTTTGAAAGAAATTTCGAATAGAGGACTAGTAGCAAGTTGGTGTCCACAAGAGAAGGTATTGAACCACCCTTCAGTCGGTGGTTTCTTGACTCATTGCGGATGGAACTCAACCACTGAAAGCATATGTGCTGGAGTTCCAATGTTATGTTGGCCATTTTTTCGGATCAGCCGGCAAACTGCAGATATATTTGCAATGAATGGGAGATTGGAAACGAAATCGAAACGAATGTAA
Protein sequence

>Msa0975540

MNDSKPHAVLIPYPVQGHINPLLKLAKLLHLRGFHITFVNTEYKHKRLLKSRGPNAFDGLTDFTFEAIPDGLTPADGDGDVSQDIRALCKSIRKNFLQPFRELLARLHESFTAGLIPPVTCLVYDWNMSFTIQVAEELSLHDGDGDVSQDLHSLGESILTNFRHFFDELLAKLQDSATAGLIPPVTCLVSDCYMPFTVDAAEEHTLPIVLFSPCSASYFLACLLNPKMYQNSQLPFKDESDLTNEYLDTKIDWISGLKNLMIRFGTESMFPSLYTIGPLASFVNQSPQNHLTSLDSNLWKEDTKCLEWLESKEPGSVVYVNFGSITVMSREKLIEFAWGLANSKKPFLWIIRPDLVIGGSGVFSSDFLKEISNRGLVASWCPQEKVLNHPSVGGFLTHCGWNSTTESICAGVPMLCWPFFRISRQTADIFAMNGRLETKSKRM*