AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0107460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0107460 MtrunA17_Chr1g0163521 97.761 268 3 1 1 265 1 268 0.0 531
Msa0107460 MtrunA17_Chr5g0436571 50.204 245 91 5 21 265 19 232 1.41e-78 241
Msa0107460 MtrunA17_Chr8g0372531 28.205 234 111 8 25 255 29 208 3.12e-16 77.0
Msa0107460 MtrunA17_Chr7g0269701 26.360 239 112 9 9 241 21 201 1.76e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0107460 AT2G39970.1 54.918 244 81 4 21 264 19 233 7.60e-87 262
Msa0107460 AT5G66380.1 27.308 260 133 6 1 257 1 207 5.52e-18 82.0
Msa0107460 AT4G32400.1 25.000 240 119 4 8 246 206 385 1.97e-12 67.0

Find 86 sgRNAs with CRISPR-Local

Find 436 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATGAACCTTTAGGTTAT+TGG 0.181706 1_3:+17921775 Msa0107460:intron
AAGCCGGTATAGTTGGATTT+TGG 0.206499 1_3:+17924810 Msa0107460:CDS
GGTCTTAAGCCTTCTCTTCT+TGG 0.215597 1_3:+17921826 Msa0107460:CDS
AGGAAAAGAAAGAAGCTTTA+AGG 0.260649 1_3:+17924424 Msa0107460:CDS
CTCATTGTAGCTGCTATTGC+CGG 0.272795 1_3:+17923849 Msa0107460:CDS
TGCTGCTTCTGTATTATTCA+TGG 0.278898 1_3:+17927565 Msa0107460:three_prime_UTR
AACATCAAACGATAAGAAAT+TGG 0.280659 1_3:+17921348 Msa0107460:five_prime_UTR
ACTACTGCTTCTTCTTCTTC+TGG 0.290540 1_3:+17921666 Msa0107460:CDS
CACGAGTGTAACTGCTTTAG+AGG 0.333460 1_3:+17925060 Msa0107460:CDS
TCTTGGAACTGCTGCTTCTC+AGG 0.346908 1_3:+17921843 Msa0107460:CDS
TCTACAAAGCCTAAACCATT+TGG 0.353256 1_3:+17924510 Msa0107460:CDS
TGTATAGTCCCAAATGGTTT+AGG 0.364147 1_3:-17924519 None:intergenic
TGTCATCCCAGCTCTAATTA+TGG 0.379993 1_3:+17924838 Msa0107460:CDS
GGTTATTGGAAATGAAGGTT+GGG 0.381820 1_3:+17921789 Msa0107460:intron
CGAGTCACGAGAACCCATAT+TGG 0.385303 1_3:-17923999 None:intergenic
AATCCTCTTGTCATTCAAAA+AGG 0.386548 1_3:+17925188 Msa0107460:three_prime_UTR
TTCAACATTGGAAGAAAAGT+TGG 0.393488 1_3:+17924476 Msa0107460:CDS
GAGTCACGAGAACCCATATT+GGG 0.394359 1_3:-17923998 None:intergenic
TACGTGAGGTGTTAGTTTAG+TGG 0.400846 1_3:+17927709 Msa0107460:three_prime_UTR
CTACAAAGCCTAAACCATTT+GGG 0.407495 1_3:+17924511 Msa0107460:CDS
CTTTAGGTTATTGGAAATGA+AGG 0.415190 1_3:+17921784 Msa0107460:intron
CTCATCCCTTTATAAAAGCC+TGG 0.415845 1_3:-17927518 None:intergenic
GTCGAGGCTTCAAGCAAAAC+AGG 0.423021 1_3:+17925786 Msa0107460:intron
ACAAGTGGAAAACATGAGTT+AGG 0.427373 1_3:+17925101 Msa0107460:three_prime_UTR
GCTTCTGAGAGTAGCTTAGT+AGG 0.437524 1_3:+17924453 Msa0107460:CDS
AGGTTATTGGAAATGAAGGT+TGG 0.438668 1_3:+17921788 Msa0107460:intron
AGAAGCAGTAGTTATTGTGT+TGG 0.439931 1_3:-17921655 None:intergenic
CTTAAAATGATCCGTTATGA+AGG 0.440580 1_3:+17927491 Msa0107460:three_prime_UTR
TTAAGTGTTTGTTTGGTTCA+CGG 0.459121 1_3:-17921251 None:intergenic
AAACTAACCATAATTAGAGC+TGG 0.469794 1_3:-17924845 None:intergenic
AAACTGAGAGAACACTTAAG+AGG 0.470485 1_3:+17921613 Msa0107460:CDS
TGATGAAGTGAAACTGTGTT+TGG 0.470991 1_3:-17921387 None:intergenic
GATGGTACTGTTGGAATGTT+CGG 0.472704 1_3:+17923822 Msa0107460:CDS
GTTGGAGCAATAGCAAAACT+TGG 0.479144 1_3:+17925219 Msa0107460:three_prime_UTR
GTTTGTGAACAAAACATTCA+AGG 0.483957 1_3:-17923976 None:intergenic
GCCATAGCAAATGGTTTAGC+TGG 0.486226 1_3:+17921424 Msa0107460:CDS
TATAACGAAGCCGGTATAGT+TGG 0.486247 1_3:+17924803 Msa0107460:CDS
TTTGTTCACAAACCCAATAT+GGG 0.491857 1_3:+17923986 Msa0107460:CDS
GGTAAAGGAGGAGCTTGTTA+AGG 0.495294 1_3:+17927586 Msa0107460:three_prime_UTR
AGAGTTCATTAAAGCATCTA+CGG 0.496834 1_3:+17925008 Msa0107460:CDS
TTGTTTGGTTCACGGATAAG+AGG 0.499450 1_3:-17921243 None:intergenic
TTCTGTATTATTCATGGTAA+AGG 0.502004 1_3:+17927571 Msa0107460:three_prime_UTR
GGTTTAGCTGGTGCTGGTGG+TGG 0.503052 1_3:+17921436 Msa0107460:CDS
ATCCGTTATGAAGGACTCCC+AGG 0.512939 1_3:+17927500 Msa0107460:three_prime_UTR
GAGTCAAACGCCATAGCAAA+TGG 0.513995 1_3:+17921415 Msa0107460:CDS
TTACCTTGACAACTAGCAAT+GGG 0.516339 1_3:-17925260 None:intergenic
AATAACTCATTAAGATACTC+AGG 0.526598 1_3:+17925820 Msa0107460:three_prime_UTR
CTTCAAGCAAAACAGGAGAT+TGG 0.528280 1_3:+17925793 Msa0107460:three_prime_UTR
TTTCCAAAATCCAACTATAC+CGG 0.529288 1_3:-17924813 None:intergenic
ACTGCATGTATAGTCCCAAA+TGG 0.529844 1_3:-17924525 None:intergenic
GGTTCTCGTGACTCGAATGC+AGG 0.537335 1_3:+17924007 Msa0107460:CDS
TAGCTTAGTAGGTTCAACAT+TGG 0.540514 1_3:+17924464 Msa0107460:CDS
AACTAACCATAATTAGAGCT+GGG 0.541649 1_3:-17924844 None:intergenic
GGACATGGAGATGGTACTGT+TGG 0.547818 1_3:+17923813 Msa0107460:CDS
GCAAATGGTTTAGCTGGTGC+TGG 0.549491 1_3:+17921430 Msa0107460:CDS
AACGCTCTGCTAAGAAGCAA+GGG 0.553222 1_3:+17925035 Msa0107460:CDS
TAAATCATAAACTGTATCGA+TGG 0.556216 1_3:-17924983 None:intergenic
GCAGCAGTTCCAAGAAGAGA+AGG 0.561769 1_3:-17921835 None:intergenic
GTTATTGGAAATGAAGGTTG+GGG 0.562835 1_3:+17921790 Msa0107460:CDS
ATTGGTTATACAGCTTGAAG+TGG 0.564069 1_3:-17921484 None:intergenic
TTGTTGAATTGAAGTAAAAG+TGG 0.564710 1_3:-17921326 None:intergenic
ACCAGCTAAACCATTTGCTA+TGG 0.571212 1_3:-17921425 None:intergenic
CTTACCTTGACAACTAGCAA+TGG 0.571902 1_3:-17925261 None:intergenic
GTACTGTTGGAATGTTCGGT+TGG 0.572059 1_3:+17923826 Msa0107460:CDS
TCATTGTAGCTGCTATTGCC+GGG 0.574084 1_3:+17923850 Msa0107460:CDS
TGTATTATTCATGGTAAAGG+AGG 0.574583 1_3:+17927574 Msa0107460:three_prime_UTR
TGTTGAATTGAAGTAAAAGT+GGG 0.574654 1_3:-17921325 None:intergenic
GAGTTCATTAAAGCATCTAC+GGG 0.577510 1_3:+17925009 Msa0107460:CDS
AAACGCTCTGCTAAGAAGCA+AGG 0.580328 1_3:+17925034 Msa0107460:CDS
ATACCCATTGCTAGTTGTCA+AGG 0.585169 1_3:+17925257 Msa0107460:three_prime_UTR
TCATCCCTTTATAAAAGCCT+GGG 0.585664 1_3:-17927517 None:intergenic
AAAGAAAGAAGCTTTAAGGA+AGG 0.587121 1_3:+17924428 Msa0107460:CDS
CAAGCAAAACAGGAGATTGG+TGG 0.587692 1_3:+17925796 Msa0107460:three_prime_UTR
GCAAGGAAAGTCAAAGGACA+TGG 0.593446 1_3:+17923798 Msa0107460:CDS
AATGAAGTATATAACGAAGC+CGG 0.598651 1_3:+17924794 Msa0107460:CDS
CTGTGGCTATTGCAGCTGCA+AGG 0.598880 1_3:+17923781 Msa0107460:CDS
AAAGTCAAAGGACATGGAGA+TGG 0.600563 1_3:+17923804 Msa0107460:CDS
AGCCTGGGAGTCCTTCATAA+CGG 0.610166 1_3:-17927502 None:intergenic
TTTGGTTCACGGATAAGAGG+AGG 0.611202 1_3:-17921240 None:intergenic
ATTGGAAATGAAGGTTGGGG+TGG 0.611702 1_3:+17921793 Msa0107460:CDS
TTCACGGATAAGAGGAGGAG+AGG 0.630288 1_3:-17921235 None:intergenic
GGTTGGGGTGGACTCTACAG+TGG 0.630980 1_3:+17921805 Msa0107460:CDS
GCAGCTGCAAGGAAAGTCAA+AGG 0.631757 1_3:+17923792 Msa0107460:CDS
AATGGTTTAGCTGGTGCTGG+TGG 0.648458 1_3:+17921433 Msa0107460:CDS
ATATAAGTAGCTTGTACGTG+AGG 0.656165 1_3:+17927695 Msa0107460:three_prime_UTR
ACGCTCTGCTAAGAAGCAAG+GGG 0.664715 1_3:+17925036 Msa0107460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATACGTTTTTATTTTATTA+CGG + chr1_3:17923028-17923047 Msa0107460:intron 10.0%
!! ATCTGAATTTAATTATAAAA+TGG - chr1_3:17924064-17924083 None:intergenic 10.0%
!!! GAGTTTTTTTTTTTAATATT+AGG + chr1_3:17925558-17925577 Msa0107460:intron 10.0%
!! AAAAATATATAAAAAACCAA+AGG - chr1_3:17925883-17925902 None:intergenic 10.0%
!! TAATTTACCAAAAAAAAAAA+TGG - chr1_3:17927156-17927175 None:intergenic 10.0%
!!! ATTTTTTTTACATTAGAAAA+GGG - chr1_3:17927450-17927469 None:intergenic 10.0%
!!! TTTTTTATTAAGTGTTTGTT+TGG - chr1_3:17921261-17921280 None:intergenic 15.0%
!! TACAAGATAATTAAGAATAA+AGG - chr1_3:17921518-17921537 None:intergenic 15.0%
!!! TCATATCATTTTAGAATTAT+GGG - chr1_3:17922065-17922084 None:intergenic 15.0%
!!! ATACGTTTTTATTTTATTAC+GGG + chr1_3:17923029-17923048 Msa0107460:intron 15.0%
!!! TACTAAATGGTTTTAAATTT+CGG - chr1_3:17923538-17923557 None:intergenic 15.0%
!!! TTGATAATTAAGCATTTAAA+TGG - chr1_3:17923712-17923731 None:intergenic 15.0%
!!! AATCTATTTTTTTAATACGA+TGG - chr1_3:17924649-17924668 None:intergenic 15.0%
!! ATTAAAAAAATAGATTACAC+CGG + chr1_3:17924653-17924672 Msa0107460:intron 15.0%
!! AATCTTAAGTTCATAATATT+TGG + chr1_3:17925356-17925375 Msa0107460:intron 15.0%
!!! AATTTAATTTTCCTTTTGAA+TGG + chr1_3:17926046-17926065 Msa0107460:intron 15.0%
!! TGAATGAAATTATATTAAGT+TGG + chr1_3:17926203-17926222 Msa0107460:intron 15.0%
!! GAATGAAATTATATTAAGTT+GGG + chr1_3:17926204-17926223 Msa0107460:intron 15.0%
!! ATAATACATTAACATTACTA+CGG + chr1_3:17926408-17926427 Msa0107460:intron 15.0%
!! ATCACATAAAAATAAAGAAA+TGG - chr1_3:17926757-17926776 None:intergenic 15.0%
!!! TATAATTTTTCACAATATCA+TGG - chr1_3:17927036-17927055 None:intergenic 15.0%
!!! CATTTTTTTTACATTAGAAA+AGG - chr1_3:17927451-17927470 None:intergenic 15.0%
!!! TTGTTTCATTTCTTTTTGAT+TGG + chr1_3:17921724-17921743 Msa0107460:intron 20.0%
!!! TGTTTTTATTATGAACCTTT+AGG + chr1_3:17921768-17921787 Msa0107460:intron 20.0%
!! TTAGATAAAAACACTTGAAA+TGG - chr1_3:17921873-17921892 None:intergenic 20.0%
!!! CTCATATCATTTTAGAATTA+TGG - chr1_3:17922066-17922085 None:intergenic 20.0%
!!! TAATTCTAAAATGATATGAG+TGG + chr1_3:17922066-17922085 Msa0107460:intron 20.0%
!!! AAGGAAATATTTTTTTAGTG+AGG - chr1_3:17922467-17922486 None:intergenic 20.0%
!! TAGTACTTAGTAATACTATT+GGG - chr1_3:17922703-17922722 None:intergenic 20.0%
!!! AAGGAAATATTTTTTTAGTG+AGG - chr1_3:17922467-17922486 None:intergenic 20.0%
!! CAAATAGATAAAGATATTAC+AGG - chr1_3:17923333-17923352 None:intergenic 20.0%
!!! CTTAATTATCAAAGTTTTCA+GGG + chr1_3:17923720-17923739 Msa0107460:intron 20.0%
!! AGAATATCAATGAAATACTT+GGG - chr1_3:17923936-17923955 None:intergenic 20.0%
!! AAGAATATCAATGAAATACT+TGG - chr1_3:17923937-17923956 None:intergenic 20.0%
!! TTCTTATAATCTTATTATGC+AGG + chr1_3:17923952-17923971 Msa0107460:intron 20.0%
!!! TTCTTGTATTATTCATCTTT+TGG + chr1_3:17924037-17924056 Msa0107460:intron 20.0%
!!! TAAAAGTACTATGTAAATTC+CGG - chr1_3:17924675-17924694 None:intergenic 20.0%
!!! GAAATTTTGATTTGATGAAA+AGG + chr1_3:17924769-17924788 Msa0107460:intron 20.0%
!!! AGAATACTTTTAAATACAAG+TGG + chr1_3:17925086-17925105 Msa0107460:exon 20.0%
!! ATTATGAACTTAAGATTTCT+AGG - chr1_3:17925353-17925372 None:intergenic 20.0%
!! GAACTACATAATTAAGAAAA+AGG - chr1_3:17925489-17925508 None:intergenic 20.0%
!!! TGTAATACTTAATTTTCCTT+TGG + chr1_3:17925864-17925883 Msa0107460:intron 20.0%
!!! ACTTTATATTTTCAAGGATA+GGG - chr1_3:17925916-17925935 None:intergenic 20.0%
!!! AACTTTATATTTTCAAGGAT+AGG - chr1_3:17925917-17925936 None:intergenic 20.0%
!!! TTCACAACTTTATATTTTCA+AGG - chr1_3:17925922-17925941 None:intergenic 20.0%
!! TACATAAAAGAGTAACAAAA+GGG + chr1_3:17925996-17926015 Msa0107460:intron 20.0%
!! TATAATAACAACCATTCAAA+AGG - chr1_3:17926060-17926079 None:intergenic 20.0%
!!! AACATCTTAGAATTTTAGTT+GGG - chr1_3:17926275-17926294 None:intergenic 20.0%
!! AAAATAAAGAAATGGTTCAA+AGG - chr1_3:17926749-17926768 None:intergenic 20.0%
!!! ATGTGATTCTTTATTTTGTT+TGG + chr1_3:17926770-17926789 Msa0107460:intron 20.0%
!!! TTTAAACCTTAATCTTTTGA+GGG - chr1_3:17926850-17926869 None:intergenic 20.0%
!!! TTTTAAACCTTAATCTTTTG+AGG - chr1_3:17926851-17926870 None:intergenic 20.0%
!!! AATGATTTGTAAACATGTTA+TGG + chr1_3:17926869-17926888 Msa0107460:intron 20.0%
!! TTCTAATGTAAAAAAAATGC+AGG + chr1_3:17927452-17927471 Msa0107460:intron 20.0%
! TGTTGAATTGAAGTAAAAGT+GGG - chr1_3:17921328-17921347 None:intergenic 25.0%
! TTGTTGAATTGAAGTAAAAG+TGG - chr1_3:17921329-17921348 None:intergenic 25.0%
! AACATCAAACGATAAGAAAT+TGG + chr1_3:17921348-17921367 Msa0107460:five_prime_UTR 25.0%
!!! CATTGCAATATTCATTTTTC+AGG + chr1_3:17921575-17921594 Msa0107460:intron 25.0%
!! CATTTTTCTTCAGATTTTTC+AGG + chr1_3:17921689-17921708 Msa0107460:CDS 25.0%
!! ATTATGAACCTTTAGGTTAT+TGG + chr1_3:17921775-17921794 Msa0107460:intron 25.0%
! ACGAAGATATGTTTATAAGT+GGG + chr1_3:17921992-17922011 Msa0107460:intron 25.0%
!!! TCATTTTAGAATTATGGGTT+GGG - chr1_3:17922060-17922079 None:intergenic 25.0%
!!! ATCATTTTAGAATTATGGGT+TGG - chr1_3:17922061-17922080 None:intergenic 25.0%
! TGATACAATCTTAAAGTTTG+TGG - chr1_3:17922289-17922308 None:intergenic 25.0%
! AAGCCTATCAAAGATTAATT+TGG + chr1_3:17922309-17922328 Msa0107460:intron 25.0%
! ATGCCAAATTAATCTTTGAT+AGG - chr1_3:17922315-17922334 None:intergenic 25.0%
!! TATCAAAGATTAATTTGGCA+TGG + chr1_3:17922314-17922333 Msa0107460:intron 25.0%
! TATCAGAGAAAAAGACAATA+AGG - chr1_3:17922486-17922505 None:intergenic 25.0%
! ATAAAACAAGACAACAAAAG+AGG - chr1_3:17922576-17922595 None:intergenic 25.0%
!!! TTGGGCTATATTTTTTTTTG+AGG - chr1_3:17922685-17922704 None:intergenic 25.0%
! GTAGTACTTAGTAATACTAT+TGG - chr1_3:17922704-17922723 None:intergenic 25.0%
! ATAAAACAAGACAACAAAAG+AGG - chr1_3:17922576-17922595 None:intergenic 25.0%
!! TGTTTTATGCCTATTAGAAT+TGG + chr1_3:17922588-17922607 Msa0107460:intron 25.0%
!! GTTTTATGCCTATTAGAATT+GGG + chr1_3:17922589-17922608 Msa0107460:intron 25.0%
!! TCTTATAAGTCTGTTTTGTA+AGG + chr1_3:17923216-17923235 Msa0107460:intron 25.0%
!! ATTTCTTCTTCGAATTTTTG+AGG - chr1_3:17923256-17923275 None:intergenic 25.0%
! ACTATGGTAGTAATATACAA+TGG - chr1_3:17923364-17923383 None:intergenic 25.0%
! CAGACAGTAAATTAAAACTA+TGG - chr1_3:17923380-17923399 None:intergenic 25.0%
! TTTATAATATGGCAAAATGC+GGG - chr1_3:17923490-17923509 None:intergenic 25.0%
! CTTTATAATATGGCAAAATG+CGG - chr1_3:17923491-17923510 None:intergenic 25.0%
!! TTCATATTGACTGCTATTAA+AGG + chr1_3:17923568-17923587 Msa0107460:intron 25.0%
!!! AATATGATGTGCTTTTTGTT+TGG + chr1_3:17923674-17923693 Msa0107460:intron 25.0%
!!! ATATGATGTGCTTTTTGTTT+GGG + chr1_3:17923675-17923694 Msa0107460:intron 25.0%
!! GCTTAATTATCAAAGTTTTC+AGG + chr1_3:17923719-17923738 Msa0107460:intron 25.0%
! TTCTTATGTTCTCTACTTAT+CGG - chr1_3:17924097-17924116 None:intergenic 25.0%
! CTCTTATTCACTTATATAGT+GGG - chr1_3:17924233-17924252 None:intergenic 25.0%
!! TTTTAAGCATTCGAAGTTAA+TGG - chr1_3:17924272-17924291 None:intergenic 25.0%
! AATTTCAACATGAAAGATCA+TGG - chr1_3:17924616-17924635 None:intergenic 25.0%
! TAGTTCTTTCACTTTAATCA+AGG + chr1_3:17924739-17924758 Msa0107460:intron 25.0%
! GAATGTATCAATAAGATGAT+TGG - chr1_3:17924873-17924892 None:intergenic 25.0%
! TAAATCATAAACTGTATCGA+TGG - chr1_3:17924986-17925005 None:intergenic 25.0%
!! ATAAAACGAAGTACTTGATA+TGG - chr1_3:17925451-17925470 None:intergenic 25.0%
! GTCAAGTATAAAGTTTACTT+AGG + chr1_3:17925599-17925618 Msa0107460:intron 25.0%
! AATAACTCATTAAGATACTC+AGG + chr1_3:17925820-17925839 Msa0107460:three_prime_UTR 25.0%
! GTACATAAAAGAGTAACAAA+AGG + chr1_3:17925995-17926014 Msa0107460:intron 25.0%
! ACATAAAAGAGTAACAAAAG+GGG + chr1_3:17925997-17926016 Msa0107460:intron 25.0%
!!! CAACATCTTAGAATTTTAGT+TGG - chr1_3:17926276-17926295 None:intergenic 25.0%
! CACTTATTATCATACTTTCA+AGG - chr1_3:17926346-17926365 None:intergenic 25.0%
!! CTTGAAAGTATGATAATAAG+TGG + chr1_3:17926344-17926363 Msa0107460:intron 25.0%
! ACCAAATTTCCAAAAATTAG+TGG + chr1_3:17926480-17926499 Msa0107460:intron 25.0%
! CCAAATTTCCAAAAATTAGT+GGG + chr1_3:17926481-17926500 Msa0107460:intron 25.0%
! TCTAATGAAATTTGAATCCA+GGG - chr1_3:17926616-17926635 None:intergenic 25.0%
!! CATTAGAGTTTTACATTTGT+AGG + chr1_3:17926629-17926648 Msa0107460:intron 25.0%
!!! TTGTAGGACTTATTTTTTGT+TGG + chr1_3:17926645-17926664 Msa0107460:intron 25.0%
!!! TTTTTTGTTGGCTGAAATTA+TGG + chr1_3:17926657-17926676 Msa0107460:intron 25.0%
! CAATATTGCGAAAATAGTAT+CGG - chr1_3:17926686-17926705 None:intergenic 25.0%
! TTTGTTTGGAAACCTTTAAT+AGG + chr1_3:17926784-17926803 Msa0107460:intron 25.0%
! TTTATCTACAACTATAGTCA+AGG + chr1_3:17926993-17927012 Msa0107460:intron 25.0%
! TTACCAAAAAAAAAAATGGC+AGG - chr1_3:17927152-17927171 None:intergenic 25.0%
! AAAATAGTGCACTATAATCA+GGG - chr1_3:17927265-17927284 None:intergenic 25.0%
! AAAAATAGTGCACTATAATC+AGG - chr1_3:17927266-17927285 None:intergenic 25.0%
! AAATACATACTTTGACAAAG+AGG - chr1_3:17927427-17927446 None:intergenic 25.0%
! TTCTGTATTATTCATGGTAA+AGG + chr1_3:17927571-17927590 Msa0107460:three_prime_UTR 25.0%
! TTAAGTGTTTGTTTGGTTCA+CGG - chr1_3:17921254-17921273 None:intergenic 30.0%
! AGAATAAAGGAAGAGAGTAT+TGG - chr1_3:17921505-17921524 None:intergenic 30.0%
CTTCATTTCCAATAACCTAA+AGG - chr1_3:17921786-17921805 None:intergenic 30.0%
! CTTTAGGTTATTGGAAATGA+AGG + chr1_3:17921784-17921803 Msa0107460:intron 30.0%
TAAAGCCTAAAGCAACTATT+GGG - chr1_3:17921902-17921921 None:intergenic 30.0%
ATAAAGCCTAAAGCAACTAT+TGG - chr1_3:17921903-17921922 None:intergenic 30.0%
TATTACTAGTATGAGACAGA+GGG - chr1_3:17921935-17921954 None:intergenic 30.0%
TTATTACTAGTATGAGACAG+AGG - chr1_3:17921936-17921955 None:intergenic 30.0%
CACGAAGATATGTTTATAAG+TGG + chr1_3:17921991-17922010 Msa0107460:intron 30.0%
CGAAGATATGTTTATAAGTG+GGG + chr1_3:17921993-17922012 Msa0107460:intron 30.0%
ACAATCTTAAAGTTTGTGGT+TGG - chr1_3:17922285-17922304 None:intergenic 30.0%
!!! TTTTTTAGGCCCATACTTTA+TGG - chr1_3:17922412-17922431 None:intergenic 30.0%
!!! CTGGGCTGTAATTTTTTTTT+AGG - chr1_3:17922426-17922445 None:intergenic 30.0%
TAGTACTTAGTAGTACTACT+GGG - chr1_3:17922444-17922463 None:intergenic 30.0%
AGAGGAAAAGGAAATCAAAT+CGG - chr1_3:17922558-17922577 None:intergenic 30.0%
! ATGCTCTAGATGTTTAGTTA+TGG + chr1_3:17923117-17923136 Msa0107460:intron 30.0%
! TGCTCTAGATGTTTAGTTAT+GGG + chr1_3:17923118-17923137 Msa0107460:intron 30.0%
TTACAGTTGTAATGTCATTG+TGG - chr1_3:17923444-17923463 None:intergenic 30.0%
! CGCATTTTGCCATATTATAA+AGG + chr1_3:17923489-17923508 Msa0107460:intron 30.0%
CACTGCAAACCTTTATAATA+TGG - chr1_3:17923501-17923520 None:intergenic 30.0%
ATAGCAGTCAATATGAATCA+GGG - chr1_3:17923565-17923584 None:intergenic 30.0%
AATAGCAGTCAATATGAATC+AGG - chr1_3:17923566-17923585 None:intergenic 30.0%
!! TGCTTTTTGTTTGGGATTTT+AGG + chr1_3:17923683-17923702 Msa0107460:intron 30.0%
!! CTATCAAGTTTTCAAGAACA+AGG + chr1_3:17923758-17923777 Msa0107460:CDS 30.0%
AAATAGACATGAAAATCACC+CGG - chr1_3:17923871-17923890 None:intergenic 30.0%
GTTTGTGAACAAAACATTCA+AGG - chr1_3:17923979-17923998 None:intergenic 30.0%
! TTTTGTTCACAAACCCAATA+TGG + chr1_3:17923985-17924004 Msa0107460:CDS 30.0%
TTTGTTCACAAACCCAATAT+GGG + chr1_3:17923986-17924005 Msa0107460:CDS 30.0%
TTATGTATCTGACAATACAG+TGG + chr1_3:17924152-17924171 Msa0107460:intron 30.0%
GCTCTTATTCACTTATATAG+TGG - chr1_3:17924234-17924253 None:intergenic 30.0%
!! TTAATGGATTGTGTTGAGTA+TGG - chr1_3:17924256-17924275 None:intergenic 30.0%
ACATCAGCAAAAACAGATAA+TGG - chr1_3:17924303-17924322 None:intergenic 30.0%
ATGTCAAGCATAATTGACAT+TGG - chr1_3:17924355-17924374 None:intergenic 30.0%
TCAAGCAGAAAGAAAAATCT+TGG + chr1_3:17924401-17924420 Msa0107460:CDS 30.0%
AGGAAAAGAAAGAAGCTTTA+AGG + chr1_3:17924424-17924443 Msa0107460:CDS 30.0%
!! AAAGAAAGAAGCTTTAAGGA+AGG + chr1_3:17924428-17924447 Msa0107460:CDS 30.0%
TTCAACATTGGAAGAAAAGT+TGG + chr1_3:17924476-17924495 Msa0107460:CDS 30.0%
ATCATGGATGTTATTGAAAG+AGG - chr1_3:17924600-17924619 None:intergenic 30.0%
AAATGTGAATCGACAATCTT+TGG - chr1_3:17924709-17924728 None:intergenic 30.0%
AATGAAGTATATAACGAAGC+CGG + chr1_3:17924794-17924813 Msa0107460:CDS 30.0%
TTTCCAAAATCCAACTATAC+CGG - chr1_3:17924816-17924835 None:intergenic 30.0%
AACTAACCATAATTAGAGCT+GGG - chr1_3:17924847-17924866 None:intergenic 30.0%
AAACTAACCATAATTAGAGC+TGG - chr1_3:17924848-17924867 None:intergenic 30.0%
! AGACTGAGAATTTTCATGAT+AGG + chr1_3:17924952-17924971 Msa0107460:intron 30.0%
! AGAGTTCATTAAAGCATCTA+CGG + chr1_3:17925008-17925027 Msa0107460:CDS 30.0%
AATCCTCTTGTCATTCAAAA+AGG + chr1_3:17925188-17925207 Msa0107460:three_prime_UTR 30.0%
! GTCATTCAAAAAGGTCTTTT+TGG + chr1_3:17925197-17925216 Msa0107460:three_prime_UTR 30.0%
! GAACTTAAGATTTCTAGGTA+AGG - chr1_3:17925348-17925367 None:intergenic 30.0%
CCAAATATTGGAATATCGAT+AGG - chr1_3:17925411-17925430 None:intergenic 30.0%
CCTATCGATATTCCAATATT+TGG + chr1_3:17925408-17925427 Msa0107460:intron 30.0%
! ACTTCCTTAACTGTTGTTTA+AGG + chr1_3:17925963-17925982 Msa0107460:intron 30.0%
ACTTCCTTAAACAACAGTTA+AGG - chr1_3:17925970-17925989 None:intergenic 30.0%
TTATGTTAAGAATCCCACAT+TGG + chr1_3:17926167-17926186 Msa0107460:intron 30.0%
AACTCAAAACCTTACATATC+CGG - chr1_3:17926249-17926268 None:intergenic 30.0%
!!! GATATGTAAGGTTTTGAGTT+GGG + chr1_3:17926249-17926268 Msa0107460:intron 30.0%
! ATCTAGAGCAATACTGAAAT+GGG - chr1_3:17926303-17926322 None:intergenic 30.0%
! TATCTAGAGCAATACTGAAA+TGG - chr1_3:17926304-17926323 None:intergenic 30.0%
! GAAAGTATGATAATAAGTGG+AGG + chr1_3:17926347-17926366 Msa0107460:intron 30.0%
TAGTACTCTACTCAAAATCA+AGG - chr1_3:17926440-17926459 None:intergenic 30.0%
!! TTTTGAGTAGAGTACTAACT+AGG + chr1_3:17926443-17926462 Msa0107460:intron 30.0%
! TTTGAGTAGAGTACTAACTA+GGG + chr1_3:17926444-17926463 Msa0107460:intron 30.0%
!! CCCACTAATTTTTGGAAATT+TGG - chr1_3:17926484-17926503 None:intergenic 30.0%
AAACCTAGAGATAATCAAAG+AGG + chr1_3:17926504-17926523 Msa0107460:intron 30.0%
TTTCCTCTTTGATTATCTCT+AGG - chr1_3:17926510-17926529 None:intergenic 30.0%
TAGAGATAATCAAAGAGGAA+AGG + chr1_3:17926509-17926528 Msa0107460:intron 30.0%
! AAGGACCAAATTCTTTTTCT+GGG + chr1_3:17926543-17926562 Msa0107460:intron 30.0%
CTCTAATGAAATTTGAATCC+AGG - chr1_3:17926617-17926636 None:intergenic 30.0%
TTGACAGAAAATAACAAAGC+TGG - chr1_3:17926817-17926836 None:intergenic 30.0%
TATACACCCTCAAAAGATTA+AGG + chr1_3:17926841-17926860 Msa0107460:intron 30.0%
TAAAGTTTCCTTAGCGTTAA+GGG - chr1_3:17926905-17926924 None:intergenic 30.0%
TTAAAGTTTCCTTAGCGTTA+AGG - chr1_3:17926906-17926925 None:intergenic 30.0%
AGCATGAAACACATGAAAAA+GGG - chr1_3:17926949-17926968 None:intergenic 30.0%
TAGCATGAAACACATGAAAA+AGG - chr1_3:17926950-17926969 None:intergenic 30.0%
ATAGTCAGATGAGATTGATA+TGG + chr1_3:17927053-17927072 Msa0107460:intron 30.0%
!!! TCACCTGCCATTTTTTTTTT+TGG + chr1_3:17927146-17927165 Msa0107460:intron 30.0%
AGATTACTGAGATCCATTTA+TGG + chr1_3:17927217-17927236 Msa0107460:intron 30.0%
CATCTTCGAATATCAAATCT+AGG + chr1_3:17927372-17927391 Msa0107460:intron 30.0%
CTTAAAATGATCCGTTATGA+AGG + chr1_3:17927491-17927510 Msa0107460:three_prime_UTR 30.0%
TGTATTATTCATGGTAAAGG+AGG + chr1_3:17927574-17927593 Msa0107460:three_prime_UTR 30.0%
TGATGAAGTGAAACTGTGTT+TGG - chr1_3:17921390-17921409 None:intergenic 35.0%
ATTGGTTATACAGCTTGAAG+TGG - chr1_3:17921487-17921506 None:intergenic 35.0%
AAACTGAGAGAACACTTAAG+AGG + chr1_3:17921613-17921632 Msa0107460:CDS 35.0%
AGAAGCAGTAGTTATTGTGT+TGG - chr1_3:17921658-17921677 None:intergenic 35.0%
AGGTTATTGGAAATGAAGGT+TGG + chr1_3:17921788-17921807 Msa0107460:intron 35.0%
GGTTATTGGAAATGAAGGTT+GGG + chr1_3:17921789-17921808 Msa0107460:intron 35.0%
GTTATTGGAAATGAAGGTTG+GGG + chr1_3:17921790-17921809 Msa0107460:CDS 35.0%
ACAAAATCTACATCTAGGTG+AGG - chr1_3:17922023-17922042 None:intergenic 35.0%
! ACCTAGATGTAGATTTTGTG+TGG + chr1_3:17922024-17922043 Msa0107460:intron 35.0%
ACCACACAAAATCTACATCT+AGG - chr1_3:17922028-17922047 None:intergenic 35.0%
GTAGTACTTAGTAGTACTAC+TGG - chr1_3:17922445-17922464 None:intergenic 35.0%
AGAAGAAAAGGAAAGTCTGA+TGG - chr1_3:17922532-17922551 None:intergenic 35.0%
TCAAATCGAGGAAGAAGAAA+AGG - chr1_3:17922544-17922563 None:intergenic 35.0%
AGGAAAAGGAAATCAAATCG+AGG - chr1_3:17922556-17922575 None:intergenic 35.0%
CAAGACAACAAAAGAGGAAA+AGG - chr1_3:17922570-17922589 None:intergenic 35.0%
ACAGAAGACGCAATTCTAAT+AGG - chr1_3:17922600-17922619 None:intergenic 35.0%
CATGAGAGAGAAAGACAATA+AGG - chr1_3:17922745-17922764 None:intergenic 35.0%
GAGGAAAAGGAAATCAAATC+GGG - chr1_3:17922557-17922576 None:intergenic 35.0%
CAAGACAACAAAAGAGGAAA+AGG - chr1_3:17922570-17922589 None:intergenic 35.0%
CAAGAAGACCCAATTCTAAT+AGG - chr1_3:17922859-17922878 None:intergenic 35.0%
!!! GTGTTAGGTGGGTTTTTTTT+GGG + chr1_3:17922885-17922904 Msa0107460:intron 35.0%
! TTTGAGGTTCCTCATGTATA+CGG + chr1_3:17922915-17922934 Msa0107460:intron 35.0%
GCATGAAAGATAGCAGAAAT+AGG - chr1_3:17923101-17923120 None:intergenic 35.0%
ATGTTTAGTTATGGGTGTGA+GGG + chr1_3:17923126-17923145 Msa0107460:intron 35.0%
!!! CTTCTTCGAATTTTTGAGGT+AGG - chr1_3:17923252-17923271 None:intergenic 35.0%
TAGCAGTCAATATGAATCAG+GGG - chr1_3:17923564-17923583 None:intergenic 35.0%
! GCACATCATATTGTGTTTTC+TGG - chr1_3:17923666-17923685 None:intergenic 35.0%
CAATGAAATACTTGGGATTC+AGG - chr1_3:17923929-17923948 None:intergenic 35.0%
GTCAGATACATAAGAACGAT+TGG - chr1_3:17924145-17924164 None:intergenic 35.0%
AGCAGAAAGAAAAATCTTGG+AGG + chr1_3:17924404-17924423 Msa0107460:CDS 35.0%
TAGCTTAGTAGGTTCAACAT+TGG + chr1_3:17924464-17924483 Msa0107460:CDS 35.0%
TCTACAAAGCCTAAACCATT+TGG + chr1_3:17924510-17924529 Msa0107460:CDS 35.0%
CTACAAAGCCTAAACCATTT+GGG + chr1_3:17924511-17924530 Msa0107460:CDS 35.0%
TGTATAGTCCCAAATGGTTT+AGG - chr1_3:17924522-17924541 None:intergenic 35.0%
!! GGTATAGTTGGATTTTGGAA+AGG + chr1_3:17924815-17924834 Msa0107460:CDS 35.0%
AAATTCTCAGTCTTGCATAG+CGG - chr1_3:17924945-17924964 None:intergenic 35.0%
! GAGTTCATTAAAGCATCTAC+GGG + chr1_3:17925009-17925028 Msa0107460:CDS 35.0%
ACAAGTGGAAAACATGAGTT+AGG + chr1_3:17925101-17925120 Msa0107460:three_prime_UTR 35.0%
! AGACCTTTTTGAATGACAAG+AGG - chr1_3:17925194-17925213 None:intergenic 35.0%
TTACCTTGACAACTAGCAAT+GGG - chr1_3:17925263-17925282 None:intergenic 35.0%
TGTCAAGGTAAGTTCTTAGA+TGG + chr1_3:17925272-17925291 Msa0107460:intron 35.0%
CTACATGAACGTCCAAATAT+TGG - chr1_3:17925423-17925442 None:intergenic 35.0%
ACAACAGTTAAGGAAGTTCA+AGG - chr1_3:17925960-17925979 None:intergenic 35.0%
! TCACGAAAGCAGATCTTTTT+AGG + chr1_3:17926115-17926134 Msa0107460:intron 35.0%
!! AAGCAGATCTTTTTAGGAAG+AGG + chr1_3:17926121-17926140 Msa0107460:intron 35.0%
!!! GGATATGTAAGGTTTTGAGT+TGG + chr1_3:17926248-17926267 Msa0107460:intron 35.0%
TAAAATGAGCTTGTAAGACG+AGG - chr1_3:17926377-17926396 None:intergenic 35.0%
! CTAGGTTTCCCACTAATTTT+TGG - chr1_3:17926492-17926511 None:intergenic 35.0%
! CAAGGACCAAATTCTTTTTC+TGG + chr1_3:17926542-17926561 Msa0107460:intron 35.0%
! AGGACCAAATTCTTTTTCTG+GGG + chr1_3:17926544-17926563 Msa0107460:intron 35.0%
TGATCCCCAGAAAAAGAATT+TGG - chr1_3:17926551-17926570 None:intergenic 35.0%
TGAAATTTGAATCCAGGGAA+AGG - chr1_3:17926611-17926630 None:intergenic 35.0%
AAATGGTTCAAAGGTTCTCA+AGG - chr1_3:17926740-17926759 None:intergenic 35.0%
GTAATATACCCTTAACGCTA+AGG + chr1_3:17926894-17926913 Msa0107460:intron 35.0%
ACTCGTTGTCAATTCCATTA+TGG + chr1_3:17927076-17927095 Msa0107460:intron 35.0%
CAATTCCATTATGGTTGCAT+AGG + chr1_3:17927085-17927104 Msa0107460:intron 35.0%
TTATGCCTATGCAACCATAA+TGG - chr1_3:17927093-17927112 None:intergenic 35.0%
ATGGATCTCAGTAATCTCAA+GGG - chr1_3:17927214-17927233 None:intergenic 35.0%
AATGGATCTCAGTAATCTCA+AGG - chr1_3:17927215-17927234 None:intergenic 35.0%
GATATTCGAAGATGTATAGC+AGG - chr1_3:17927366-17927385 None:intergenic 35.0%
TCATCCCTTTATAAAAGCCT+GGG - chr1_3:17927520-17927539 None:intergenic 35.0%
! TGCTGCTTCTGTATTATTCA+TGG + chr1_3:17927565-17927584 Msa0107460:three_prime_UTR 35.0%
! ATATAAGTAGCTTGTACGTG+AGG + chr1_3:17927695-17927714 Msa0107460:three_prime_UTR 35.0%
! TTGTTTGGTTCACGGATAAG+AGG - chr1_3:17921246-17921265 None:intergenic 40.0%
! ACCAGCTAAACCATTTGCTA+TGG - chr1_3:17921428-17921447 None:intergenic 40.0%
ACTACTGCTTCTTCTTCTTC+TGG + chr1_3:17921666-17921685 Msa0107460:CDS 40.0%
GTGTCATCTCTCATCTAATG+CGG - chr1_3:17921974-17921993 None:intergenic 40.0%
AGTGGATATCCAAGAACTGT+TGG + chr1_3:17922084-17922103 Msa0107460:intron 40.0%
!! GATAGCGGAAACTTATTAGG+AGG - chr1_3:17922114-17922133 None:intergenic 40.0%
!! CCTGATAGCGGAAACTTATT+AGG - chr1_3:17922117-17922136 None:intergenic 40.0%
CCTAATAAGTTTCCGCTATC+AGG + chr1_3:17922114-17922133 Msa0107460:intron 40.0%
GTCCCACATTGTTAGTGATA+TGG + chr1_3:17922190-17922209 Msa0107460:intron 40.0%
GGCCATATCACTAACAATGT+GGG - chr1_3:17922195-17922214 None:intergenic 40.0%
AGGCCATATCACTAACAATG+TGG - chr1_3:17922196-17922215 None:intergenic 40.0%
TGTTAGTGATATGGCCTCAA+CGG + chr1_3:17922199-17922218 Msa0107460:intron 40.0%
TCACTTATAAACACCCGTTG+AGG - chr1_3:17922216-17922235 None:intergenic 40.0%
TCAACGGGTGTTTATAAGTG+AGG + chr1_3:17922215-17922234 Msa0107460:intron 40.0%
CAACGGGTGTTTATAAGTGA+GGG + chr1_3:17922216-17922235 Msa0107460:intron 40.0%
AAAAAGCAGCTTATGAGGTG+AGG - chr1_3:17922246-17922265 None:intergenic 40.0%
CACACAAAAAGCAGCTTATG+AGG - chr1_3:17922251-17922270 None:intergenic 40.0%
!!! CTCATAAGCTGCTTTTTGTG+TGG + chr1_3:17922249-17922268 Msa0107460:intron 40.0%
TTAGGCCCATACTTTATGGA+GGG - chr1_3:17922408-17922427 None:intergenic 40.0%
TTTAGGCCCATACTTTATGG+AGG - chr1_3:17922409-17922428 None:intergenic 40.0%
TAGAATTGCGTCTTCTGTTG+AGG + chr1_3:17922602-17922621 Msa0107460:intron 40.0%
AGAATTGCGTCTTCTGTTGA+GGG + chr1_3:17922603-17922622 Msa0107460:intron 40.0%
TGTAAAGAGCTCAATGGAAC+CGG + chr1_3:17922641-17922660 Msa0107460:intron 40.0%
AGAGGAAAAGGAAAGTCTGA+TGG - chr1_3:17922791-17922810 None:intergenic 40.0%
TCAAATCGGGTAAGAGGAAA+AGG - chr1_3:17922803-17922822 None:intergenic 40.0%
AGGAAATCAAATCGGGTAAG+AGG - chr1_3:17922809-17922828 None:intergenic 40.0%
! GAATTGGGTCTTCTTGCTTT+TGG + chr1_3:17922863-17922882 Msa0107460:intron 40.0%
!!! GTCTTCTTGCTTTTGGTGTT+AGG + chr1_3:17922870-17922889 Msa0107460:intron 40.0%
!!! TTCTTGCTTTTGGTGTTAGG+TGG + chr1_3:17922873-17922892 Msa0107460:intron 40.0%
!!! TCTTGCTTTTGGTGTTAGGT+GGG + chr1_3:17922874-17922893 Msa0107460:intron 40.0%
!!! GGTGTTAGGTGGGTTTTTTT+TGG + chr1_3:17922884-17922903 Msa0107460:intron 40.0%
!!! TTAGGTGGGTTTTTTTTGGG+AGG + chr1_3:17922888-17922907 Msa0107460:intron 40.0%
!!! TAGGTGGGTTTTTTTTGGGA+GGG + chr1_3:17922889-17922908 Msa0107460:intron 40.0%
TTGAGGTTCCTCATGTATAC+GGG + chr1_3:17922916-17922935 Msa0107460:intron 40.0%
AAATCACTCCCGTATACATG+AGG - chr1_3:17922927-17922946 None:intergenic 40.0%
TATATATGCGATACGCCCAA+AGG - chr1_3:17922953-17922972 None:intergenic 40.0%
TTTGGGCGTATCGCATATAT+AGG + chr1_3:17922952-17922971 Msa0107460:intron 40.0%
TTGGGCGTATCGCATATATA+GGG + chr1_3:17922953-17922972 Msa0107460:intron 40.0%
! TCGGCTTTGTAAGTGAAAAG+AGG - chr1_3:17923055-17923074 None:intergenic 40.0%
GATGTTTAGTTATGGGTGTG+AGG + chr1_3:17923125-17923144 Msa0107460:intron 40.0%
TGTTTAGTTATGGGTGTGAG+GGG + chr1_3:17923127-17923146 Msa0107460:intron 40.0%
CATCGTTTATCCAATGTGGT+GGG - chr1_3:17923167-17923186 None:intergenic 40.0%
AAGCCATCGTTTATCCAATG+TGG - chr1_3:17923171-17923190 None:intergenic 40.0%
ACTGTCTGCAACCATAATTG+CGG + chr1_3:17923392-17923411 Msa0107460:intron 40.0%
AGCAGTCAATATGAATCAGG+GGG - chr1_3:17923563-17923582 None:intergenic 40.0%
!! AGTTTTCAAGAACAAGGCTG+TGG + chr1_3:17923764-17923783 Msa0107460:CDS 40.0%
AAAGTCAAAGGACATGGAGA+TGG + chr1_3:17923804-17923823 Msa0107460:CDS 40.0%
GATGGTACTGTTGGAATGTT+CGG + chr1_3:17923822-17923841 Msa0107460:CDS 40.0%
GAGCATGGATATATGGTTTG+TGG - chr1_3:17924328-17924347 None:intergenic 40.0%
ACTGCATGTATAGTCCCAAA+TGG - chr1_3:17924528-17924547 None:intergenic 40.0%
TATAACGAAGCCGGTATAGT+TGG + chr1_3:17924803-17924822 Msa0107460:CDS 40.0%
! AAGCCGGTATAGTTGGATTT+TGG + chr1_3:17924810-17924829 Msa0107460:CDS 40.0%
! TGTCATCCCAGCTCTAATTA+TGG + chr1_3:17924838-17924857 Msa0107460:CDS 40.0%
ATACCCATTGCTAGTTGTCA+AGG + chr1_3:17925257-17925276 Msa0107460:three_prime_UTR 40.0%
CTTACCTTGACAACTAGCAA+TGG - chr1_3:17925264-17925283 None:intergenic 40.0%
! TACTTCATGTTTTGCAGTCG+AGG + chr1_3:17925770-17925789 Msa0107460:intron 40.0%
CTTCAAGCAAAACAGGAGAT+TGG + chr1_3:17925793-17925812 Msa0107460:three_prime_UTR 40.0%
TGCTTTATCACGTCCAATGT+GGG - chr1_3:17926183-17926202 None:intergenic 40.0%
ATGCTTTATCACGTCCAATG+TGG - chr1_3:17926184-17926203 None:intergenic 40.0%
TCAAAGAGGAAAGGATCAAG+TGG + chr1_3:17926518-17926537 Msa0107460:intron 40.0%
GAAAAAACTTGACCAGTAGC+AGG - chr1_3:17926586-17926605 None:intergenic 40.0%
!!! AAGTTTTTTCCTCCTTTCCC+TGG + chr1_3:17926596-17926615 Msa0107460:intron 40.0%
AATTTGAATCCAGGGAAAGG+AGG - chr1_3:17926608-17926627 None:intergenic 40.0%
GCTGGCTGTAAACCTATTAA+AGG - chr1_3:17926799-17926818 None:intergenic 40.0%
GAAACACATGAAAAAGGGAG+CGG - chr1_3:17926944-17926963 None:intergenic 40.0%
TGGATCTCAGTAATCTCAAG+GGG - chr1_3:17927213-17927232 None:intergenic 40.0%
GGGTATTAAAAAATGCTCCG+CGG - chr1_3:17927245-17927264 None:intergenic 40.0%
! GACTCCCAGGCTTTTATAAA+GGG + chr1_3:17927513-17927532 Msa0107460:three_prime_UTR 40.0%
CTCATCCCTTTATAAAAGCC+TGG - chr1_3:17927521-17927540 None:intergenic 40.0%
! TACGTGAGGTGTTAGTTTAG+TGG + chr1_3:17927709-17927728 Msa0107460:three_prime_UTR 40.0%
! TTTGGTTCACGGATAAGAGG+AGG - chr1_3:17921243-17921262 None:intergenic 45.0%
GAGTCAAACGCCATAGCAAA+TGG + chr1_3:17921415-17921434 Msa0107460:CDS 45.0%
GCCATAGCAAATGGTTTAGC+TGG + chr1_3:17921424-17921443 Msa0107460:CDS 45.0%
ATTGGAAATGAAGGTTGGGG+TGG + chr1_3:17921793-17921812 Msa0107460:CDS 45.0%
GGTCTTAAGCCTTCTCTTCT+TGG + chr1_3:17921826-17921845 Msa0107460:CDS 45.0%
! CTGCACCCAATAGTTGCTTT+AGG + chr1_3:17921894-17921913 Msa0107460:intron 45.0%
ATGTCCATTCCTGTGCTTGA+AGG + chr1_3:17922155-17922174 Msa0107460:intron 45.0%
TGTCCATTCCTGTGCTTGAA+GGG + chr1_3:17922156-17922175 Msa0107460:intron 45.0%
TAACATACCCCTTCAAGCAC+AGG - chr1_3:17922167-17922186 None:intergenic 45.0%
GTTAGTGATATGGCCTCAAC+GGG + chr1_3:17922200-17922219 Msa0107460:intron 45.0%
AACTGGCCCTCCATAAAGTA+TGG + chr1_3:17922399-17922418 Msa0107460:intron 45.0%
ACTGGCCCTCCATAAAGTAT+GGG + chr1_3:17922400-17922419 Msa0107460:intron 45.0%
AGGAAAGTCTGATGGAGTGA+TGG - chr1_3:17922524-17922543 None:intergenic 45.0%
TCTTTACACACCCCAAGGTT+CGG - chr1_3:17922629-17922648 None:intergenic 45.0%
GTAAAGAGCTCAATGGAACC+GGG + chr1_3:17922642-17922661 Msa0107460:intron 45.0%
TTGAGGCCCATACTTTATCG+AGG - chr1_3:17922668-17922687 None:intergenic 45.0%
AGGAAAGTCTGATGGAGTGA+TGG - chr1_3:17922524-17922543 None:intergenic 45.0%
!!! TTTTTTGGGAGGGTGGTTTG+AGG + chr1_3:17922899-17922918 Msa0107460:intron 45.0%
! ACGGGAGTGATTTTCACCTT+TGG + chr1_3:17922934-17922953 Msa0107460:intron 45.0%
! CGGGAGTGATTTTCACCTTT+GGG + chr1_3:17922935-17922954 Msa0107460:intron 45.0%
TGTTAAGAGTCCCACCACAT+TGG + chr1_3:17923154-17923173 Msa0107460:intron 45.0%
CCATCGTTTATCCAATGTGG+TGG - chr1_3:17923168-17923187 None:intergenic 45.0%
CCACCACATTGGATAAACGA+TGG + chr1_3:17923165-17923184 Msa0107460:intron 45.0%
TTGCGTTGTGACCGCAATTA+TGG - chr1_3:17923406-17923425 None:intergenic 45.0%
TAATTGCGGTCACAACGCAA+TGG + chr1_3:17923406-17923425 Msa0107460:intron 45.0%
! GGTCACAACGCAATGGTTTT+TGG + chr1_3:17923413-17923432 Msa0107460:intron 45.0%
!! GAATCAGGGGGAGTACTAAA+TGG - chr1_3:17923551-17923570 None:intergenic 45.0%
GCAAGGAAAGTCAAAGGACA+TGG + chr1_3:17923798-17923817 Msa0107460:CDS 45.0%
GTACTGTTGGAATGTTCGGT+TGG + chr1_3:17923826-17923845 Msa0107460:CDS 45.0%
CTCATTGTAGCTGCTATTGC+CGG + chr1_3:17923849-17923868 Msa0107460:CDS 45.0%
TCATTGTAGCTGCTATTGCC+GGG + chr1_3:17923850-17923869 Msa0107460:CDS 45.0%
GAGTCACGAGAACCCATATT+GGG - chr1_3:17924001-17924020 None:intergenic 45.0%
TGGACTCGAGCATGGATATA+TGG - chr1_3:17924335-17924354 None:intergenic 45.0%
ATTGACATTGGACTCGAGCA+TGG - chr1_3:17924343-17924362 None:intergenic 45.0%
! GCTTCTGAGAGTAGCTTAGT+AGG + chr1_3:17924453-17924472 Msa0107460:CDS 45.0%
AAACGCTCTGCTAAGAAGCA+AGG + chr1_3:17925034-17925053 Msa0107460:CDS 45.0%
AACGCTCTGCTAAGAAGCAA+GGG + chr1_3:17925035-17925054 Msa0107460:CDS 45.0%
CACGAGTGTAACTGCTTTAG+AGG + chr1_3:17925060-17925079 Msa0107460:CDS 45.0%
CTAGCATACGTGAGAGTTGA+CGG - chr1_3:17925739-17925758 None:intergenic 45.0%
CAAGCAAAACAGGAGATTGG+TGG + chr1_3:17925796-17925815 Msa0107460:three_prime_UTR 45.0%
ACAATCTTCGCCTTAGAAGC+CGG + chr1_3:17926227-17926246 Msa0107460:intron 45.0%
CCTTACATATCCGGCTTCTA+AGG - chr1_3:17926240-17926259 None:intergenic 45.0%
CCTTAGAAGCCGGATATGTA+AGG + chr1_3:17926237-17926256 Msa0107460:intron 45.0%
ACTTTCAAGGCTTCACACCA+GGG - chr1_3:17926333-17926352 None:intergenic 45.0%
TACTTTCAAGGCTTCACACC+AGG - chr1_3:17926334-17926353 None:intergenic 45.0%
AGGAAAGGATCAAGTGGTCA+AGG + chr1_3:17926524-17926543 Msa0107460:intron 45.0%
GTTCTCAAGGACGTTGTCTA+GGG - chr1_3:17926727-17926746 None:intergenic 45.0%
! GGACTCCCAGGCTTTTATAA+AGG + chr1_3:17927512-17927531 Msa0107460:three_prime_UTR 45.0%
!! GGTAAAGGAGGAGCTTGTTA+AGG + chr1_3:17927586-17927605 Msa0107460:three_prime_UTR 45.0%
!!! TTAATAAAAAATATTTTACA+AGG + chr1_3:17921270-17921289 Msa0107460:five_prime_UTR 5.0%
!! AATAAATTAAAAAAAAATTC+AGG - chr1_3:17926094-17926113 None:intergenic 5.0%
TTCACGGATAAGAGGAGGAG+AGG - chr1_3:17921238-17921257 None:intergenic 50.0%
GCAAATGGTTTAGCTGGTGC+TGG + chr1_3:17921430-17921449 Msa0107460:CDS 50.0%
! AATGGTTTAGCTGGTGCTGG+TGG + chr1_3:17921433-17921452 Msa0107460:CDS 50.0%
GCAGCAGTTCCAAGAAGAGA+AGG - chr1_3:17921838-17921857 None:intergenic 50.0%
! TCTTGGAACTGCTGCTTCTC+AGG + chr1_3:17921843-17921862 Msa0107460:CDS 50.0%
GGAGGTGATCCAACAGTTCT+TGG - chr1_3:17922096-17922115 None:intergenic 50.0%
CGTGTCAAGTGACCTGATAG+CGG - chr1_3:17922129-17922148 None:intergenic 50.0%
GTCCATTCCTGTGCTTGAAG+GGG + chr1_3:17922157-17922176 Msa0107460:intron 50.0%
TACCCCTTCAAGCACAGGAA+TGG - chr1_3:17922162-17922181 None:intergenic 50.0%
GCATGGAATCAGAGCCTATC+AGG + chr1_3:17922331-17922350 Msa0107460:intron 50.0%
AGCCTATCAGGTTTCTGCTC+AGG + chr1_3:17922343-17922362 Msa0107460:intron 50.0%
GCCTATCAGGTTTCTGCTCA+GGG + chr1_3:17922344-17922363 Msa0107460:intron 50.0%
TCTTTGCACACCCCAAGGTT+TGG - chr1_3:17922370-17922389 None:intergenic 50.0%
TGCAAAGAGCTCAAGGGAAC+TGG + chr1_3:17922382-17922401 Msa0107460:intron 50.0%
! GTCTGATGGAGTGATGGTGA+TGG - chr1_3:17922518-17922537 None:intergenic 50.0%
TGAGCTCTTTACACACCCCA+AGG - chr1_3:17922634-17922653 None:intergenic 50.0%
GGGGTGTGTAAAGAGCTCAA+TGG + chr1_3:17922635-17922654 Msa0107460:intron 50.0%
AACCGGGCCTCGATAAAGTA+TGG + chr1_3:17922658-17922677 Msa0107460:intron 50.0%
ACCGGGCCTCGATAAAGTAT+GGG + chr1_3:17922659-17922678 Msa0107460:intron 50.0%
! GTCTGATGGAGTGATGGTGA+TGG - chr1_3:17922518-17922537 None:intergenic 50.0%
!!! GTGGGTTTTTTTTGGGAGGG+TGG + chr1_3:17922892-17922911 Msa0107460:intron 50.0%
TAGGACCGTTCCTACGAATC+CGG - chr1_3:17923082-17923101 None:intergenic 50.0%
GCAGCTGCAAGGAAAGTCAA+AGG + chr1_3:17923792-17923811 Msa0107460:CDS 50.0%
GGACATGGAGATGGTACTGT+TGG + chr1_3:17923813-17923832 Msa0107460:CDS 50.0%
CGAGTCACGAGAACCCATAT+TGG - chr1_3:17924002-17924021 None:intergenic 50.0%
ACGCTCTGCTAAGAAGCAAG+GGG + chr1_3:17925036-17925055 Msa0107460:CDS 50.0%
GTCGAGGCTTCAAGCAAAAC+AGG + chr1_3:17925786-17925805 Msa0107460:intron 50.0%
! TGCTCTAGATATCCTGTCCC+TGG + chr1_3:17926313-17926332 Msa0107460:intron 50.0%
AGTGATCCTAGTCCTGCTAC+TGG + chr1_3:17926571-17926590 Msa0107460:intron 50.0%
ACTTGACCAGTAGCAGGACT+AGG - chr1_3:17926580-17926599 None:intergenic 50.0%
GGTTCTCAAGGACGTTGTCT+AGG - chr1_3:17926728-17926747 None:intergenic 50.0%
TTAGTCTCAGCAGTTACGCG+CGG - chr1_3:17927189-17927208 None:intergenic 50.0%
GAGATCCATTTATGGAGCCG+CGG + chr1_3:17927225-17927244 Msa0107460:intron 50.0%
ATCCGTTATGAAGGACTCCC+AGG + chr1_3:17927500-17927519 Msa0107460:three_prime_UTR 50.0%
AGCCTGGGAGTCCTTCATAA+CGG - chr1_3:17927505-17927524 None:intergenic 50.0%
GCCCTGAGCAGAAACCTGAT+AGG - chr1_3:17922348-17922367 None:intergenic 55.0%
TTCTGCTCAGGGCCAAACCT+TGG + chr1_3:17922355-17922374 Msa0107460:intron 55.0%
TCTGCTCAGGGCCAAACCTT+GGG + chr1_3:17922356-17922375 Msa0107460:intron 55.0%
TGAGCTCTTTGCACACCCCA+AGG - chr1_3:17922375-17922394 None:intergenic 55.0%
TGGGGTGTGCAAAGAGCTCA+AGG + chr1_3:17922375-17922394 Msa0107460:intron 55.0%
GGGGTGTGCAAAGAGCTCAA+GGG + chr1_3:17922376-17922395 Msa0107460:intron 55.0%
TTCTGTTGAGGGCCGAACCT+TGG + chr1_3:17922614-17922633 Msa0107460:intron 55.0%
TCTGTTGAGGGCCGAACCTT+GGG + chr1_3:17922615-17922634 Msa0107460:intron 55.0%
GCCCATACTTTATCGAGGCC+CGG - chr1_3:17922663-17922682 None:intergenic 55.0%
!! AGTGATGGTGATGGAGAGCG+TGG - chr1_3:17922768-17922787 None:intergenic 55.0%
CACTTACAAAGCCGAGCGTC+CGG + chr1_3:17923060-17923079 Msa0107460:intron 55.0%
TTCCTACGAATCCGGACGCT+CGG - chr1_3:17923074-17923093 None:intergenic 55.0%
AGCGTCCGGATTCGTAGGAA+CGG + chr1_3:17923074-17923093 Msa0107460:intron 55.0%
CTGTGGCTATTGCAGCTGCA+AGG + chr1_3:17923781-17923800 Msa0107460:CDS 55.0%
GGTTCTCGTGACTCGAATGC+AGG + chr1_3:17924007-17924026 Msa0107460:CDS 55.0%
AGATGCTCGAGCGGAGCATA+GGG - chr1_3:17924209-17924228 None:intergenic 55.0%
!! ATAGTGGGCAGATGCTCGAG+CGG - chr1_3:17924218-17924237 None:intergenic 55.0%
ATGCTCCGCGGCTCCATAAA+TGG - chr1_3:17927233-17927252 None:intergenic 55.0%
!! GGTTTAGCTGGTGCTGGTGG+TGG + chr1_3:17921436-17921455 Msa0107460:CDS 60.0%
! GGTTGGGGTGGACTCTACAG+TGG + chr1_3:17921805-17921824 Msa0107460:CDS 60.0%
CTGCTCAGGGCCAAACCTTG+GGG + chr1_3:17922357-17922376 Msa0107460:intron 60.0%
CTGTTGAGGGCCGAACCTTG+GGG + chr1_3:17922616-17922635 Msa0107460:intron 60.0%
CAGATGCTCGAGCGGAGCAT+AGG - chr1_3:17924210-17924229 None:intergenic 60.0%
CAAGGCTTCACACCAGGGAC+AGG - chr1_3:17926328-17926347 None:intergenic 60.0%
AGCCGAGCGTCCGGATTCGT+AGG + chr1_3:17923069-17923088 Msa0107460:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 17921221 17927828 17921221 ID=Msa0107460;Name=Msa0107460
chr1_3 mRNA 17921221 17927828 17921221 ID=Msa0107460-mRNA-1;Parent=Msa0107460;Name=Msa0107460-mRNA-1;_AED=0.16;_eAED=0.16;_QI=188|1|1|1|1|0.9|10|601|265
chr1_3 exon 17921221 17921495 17921221 ID=Msa0107460-mRNA-1:exon:6676;Parent=Msa0107460-mRNA-1
chr1_3 exon 17921597 17921710 17921597 ID=Msa0107460-mRNA-1:exon:6677;Parent=Msa0107460-mRNA-1
chr1_3 exon 17921790 17921864 17921790 ID=Msa0107460-mRNA-1:exon:6678;Parent=Msa0107460-mRNA-1
chr1_3 exon 17923741 17923871 17923741 ID=Msa0107460-mRNA-1:exon:6679;Parent=Msa0107460-mRNA-1
chr1_3 exon 17923974 17924028 17923974 ID=Msa0107460-mRNA-1:exon:6680;Parent=Msa0107460-mRNA-1
chr1_3 exon 17924393 17924545 17924393 ID=Msa0107460-mRNA-1:exon:6681;Parent=Msa0107460-mRNA-1
chr1_3 exon 17924791 17924859 17924791 ID=Msa0107460-mRNA-1:exon:6682;Parent=Msa0107460-mRNA-1
chr1_3 exon 17924974 17925278 17924974 ID=Msa0107460-mRNA-1:exon:6683;Parent=Msa0107460-mRNA-1
chr1_3 exon 17925787 17925841 17925787 ID=Msa0107460-mRNA-1:exon:6684;Parent=Msa0107460-mRNA-1
chr1_3 exon 17927474 17927828 17927474 ID=Msa0107460-mRNA-1:exon:6685;Parent=Msa0107460-mRNA-1
chr1_3 five_prime_UTR 17921221 17921408 17921221 ID=Msa0107460-mRNA-1:five_prime_utr;Parent=Msa0107460-mRNA-1
chr1_3 CDS 17921409 17921495 17921409 ID=Msa0107460-mRNA-1:cds;Parent=Msa0107460-mRNA-1
chr1_3 CDS 17921597 17921710 17921597 ID=Msa0107460-mRNA-1:cds;Parent=Msa0107460-mRNA-1
chr1_3 CDS 17921790 17921864 17921790 ID=Msa0107460-mRNA-1:cds;Parent=Msa0107460-mRNA-1
chr1_3 CDS 17923741 17923871 17923741 ID=Msa0107460-mRNA-1:cds;Parent=Msa0107460-mRNA-1
chr1_3 CDS 17923974 17924028 17923974 ID=Msa0107460-mRNA-1:cds;Parent=Msa0107460-mRNA-1
chr1_3 CDS 17924393 17924545 17924393 ID=Msa0107460-mRNA-1:cds;Parent=Msa0107460-mRNA-1
chr1_3 CDS 17924791 17924859 17924791 ID=Msa0107460-mRNA-1:cds;Parent=Msa0107460-mRNA-1
chr1_3 CDS 17924974 17925087 17924974 ID=Msa0107460-mRNA-1:cds;Parent=Msa0107460-mRNA-1
chr1_3 three_prime_UTR 17925088 17925278 17925088 ID=Msa0107460-mRNA-1:three_prime_utr;Parent=Msa0107460-mRNA-1
chr1_3 three_prime_UTR 17925787 17925841 17925787 ID=Msa0107460-mRNA-1:three_prime_utr;Parent=Msa0107460-mRNA-1
chr1_3 three_prime_UTR 17927474 17927828 17927474 ID=Msa0107460-mRNA-1:three_prime_utr;Parent=Msa0107460-mRNA-1
Gene Sequence

>Msa0107460

ATGTCAGAGTCAAACGCCATAGCAAATGGTTTAGCTGGTGCTGGTGGTGGAATCATTGCTCAAATATTAACTTATCCACTTCAAGCTGTAAACACACGACAACAAACTGAGAGAACACTTAAGAGGAACAAGCAAAGTTCTTCTTCCAACACAATAACTACTGCTTCTTCTTCTTCTGGCATTTTTCTTCAGATTTTTCAGGTTATTGGAAATGAAGGTTGGGGTGGACTCTACAGTGGTCTTAAGCCTTCTCTTCTTGGAACTGCTGCTTCTCAGGGAATTTACTACTTCTTCTATCAAGTTTTCAAGAACAAGGCTGTGGCTATTGCAGCTGCAAGGAAAGTCAAAGGACATGGAGATGGTACTGTTGGAATGTTCGGTTGGCTCATTGTAGCTGCTATTGCCGGGTCCTTGAATGTTTTGTTCACAAACCCAATATGGGTTCTCGTGACTCGAATGCAGACACATACTCAAGCAGAAAGAAAAATCTTGGAGGAAAAGAAAGAAGCTTTAAGGAAGGCTGCTTCTGAGAGTAGCTTAGTAGGTTCAACATTGGAAGAAAAGTTGGAAAAACTGAATTCTACAAAGCCTAAACCATTTGGGACTATACATGCAGTTAATGAAGTATATAACGAAGCCGGTATAGTTGGATTTTGGAAAGGTGTCATCCCAGCTCTAATTATGGTATGCAATCCATCGATACAGTTTATGATTTACGAGAGTTCATTAAAGCATCTACGGGCAAAACGCTCTGCTAAGAAGCAAGGGGACACGAGTGTAACTGCTTTAGAGGTATAG

Protein sequence

>Msa0107460

MSESNAIANGLAGAGGGIIAQILTYPLQAVNTRQQTERTLKRNKQSSSSNTITTASSSSGIFLQIFQVIGNEGWGGLYSGLKPSLLGTAASQGIYYFFYQVFKNKAVAIAAARKVKGHGDGTVGMFGWLIVAAIAGSLNVLFTNPIWVLVTRMQTHTQAERKILEEKKEALRKAASESSLVGSTLEEKLEKLNSTKPKPFGTIHAVNEVYNEAGIVGFWKGVIPALIMVCNPSIQFMIYESSLKHLRAKRSAKKQGDTSVTALEV*