AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0598250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0598250 MtrunA17_Chr4g0021031 96.260 508 15 3 1 508 1 504 0.0 991
Msa0598250 MtrunA17_Chr3g0090001 34.568 324 187 7 180 494 84 391 1.21e-41 154
Msa0598250 MtrunA17_Chr3g0145921 30.897 301 198 6 209 506 278 571 2.97e-40 153
Msa0598250 MtrunA17_Chr7g0264491 31.046 306 199 5 202 503 254 551 1.71e-35 139
Msa0598250 MtrunA17_Chr1g0180881 31.373 306 196 6 193 493 249 545 5.86e-35 137
Msa0598250 MtrunA17_Chr1g0146481 28.671 286 189 5 212 494 263 536 3.24e-24 106
Msa0598250 MtrunA17_Chr3g0126401 29.153 295 193 7 208 497 222 505 3.98e-22 99.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0598250 AT1G64860.1 67.704 514 148 6 1 508 1 502 0.0 681
Msa0598250 AT1G64860.2 66.042 480 145 6 1 474 1 468 0.0 620
Msa0598250 AT1G08540.1 33.871 310 191 7 202 506 269 569 4.99e-44 164
Msa0598250 AT5G13730.1 35.738 305 175 7 197 494 114 404 2.17e-39 148
Msa0598250 AT2G36990.1 31.373 306 198 5 193 494 235 532 9.93e-37 143
Msa0598250 AT5G24120.1 31.419 296 185 7 208 497 225 508 1.06e-24 107
Msa0598250 AT5G24120.3 31.419 296 185 7 208 497 225 508 1.06e-24 107
Msa0598250 AT5G24120.2 31.419 296 185 7 208 497 225 508 1.06e-24 107
Msa0598250 AT3G53920.1 30.508 236 147 7 265 493 332 557 3.22e-22 100
Msa0598250 AT3G53920.2 29.771 131 92 0 213 343 280 410 1.66e-13 72.8

Find 129 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCATGCATCATGTGATTT+TGG 0.161123 4_2:+32816477 Msa0598250:CDS
AGATTTCAACTTATGTTTAT+TGG 0.176571 4_2:+32818228 Msa0598250:CDS
GAAATTGTTCGTCTTTATTA+TGG 0.204119 4_2:+32819881 Msa0598250:CDS
AAACAGTCGCCTCATCATTT+TGG 0.205479 4_2:-32820936 None:intergenic
TGCTCAAAGATATGATAATA+TGG 0.212191 4_2:+32818023 Msa0598250:CDS
CCCTCTCTGAATGGTCTTCC+AGG 0.256681 4_2:+32819061 Msa0598250:CDS
CTTTCCTTTGAGACATATTA+AGG 0.259743 4_2:-32818883 None:intergenic
TATAGAGTGGAAGTTAAATT+TGG 0.261841 4_2:-32816014 None:intergenic
CCCCTGAAAATATTGTCTTT+TGG 0.264741 4_2:+32820853 Msa0598250:three_prime_UTR
GGGAAGTTTCTGAAAGAAAT+AGG 0.276382 4_2:+32816323 Msa0598250:five_prime_UTR
TTTCTATAGGGTGGCTTGAT+TGG 0.278153 4_2:+32818161 Msa0598250:intron
ATGGCTACTGCAGCAGTTAT+TGG 0.280817 4_2:+32816390 Msa0598250:CDS
TTTCTATAATATCTGAATAA+TGG 0.304580 4_2:-32816449 None:intergenic
TGATTCGGAACAATGGTTTC+AGG 0.310782 4_2:+32816650 Msa0598250:CDS
AAGGTATCTGTGACTTGTTC+TGG 0.322986 4_2:+32816831 Msa0598250:CDS
GTCATTGGTTGAAACAGATA+TGG 0.327428 4_2:-32815891 None:intergenic
AACTAATAATGAGAAGAAAA+AGG 0.346613 4_2:-32821121 None:intergenic
TGATAATATGGGTGCTGAAA+TGG 0.358343 4_2:+32818035 Msa0598250:CDS
TTCTGACATGGATTATTCAT+TGG 0.361813 4_2:+32816704 Msa0598250:CDS
GAGAAGTTTGATTCTTCAAA+AGG 0.365966 4_2:+32818200 Msa0598250:CDS
GGGGAATGCTTCCCTATCTA+AGG 0.388400 4_2:-32819041 None:intergenic
CAGTTTATTGATAGTATAGT+AGG 0.400561 4_2:+32816348 Msa0598250:five_prime_UTR
TAAAACATGCCGCAAGGAAG+AGG 0.406736 4_2:+32820673 Msa0598250:CDS
AGTGGAAGTTAAATTTGGTT+AGG 0.407779 4_2:-32816009 None:intergenic
CTTTAGATGAGCATAAATCT+AGG 0.414017 4_2:+32817057 Msa0598250:CDS
AAAATGAATAGATAAAGATA+TGG 0.414596 4_2:-32815925 None:intergenic
AGACGAAAGAGGACGATATG+AGG 0.422735 4_2:+32820810 Msa0598250:three_prime_UTR
AATGGAGTCTTTCATTTGAA+AGG 0.424190 4_2:+32816766 Msa0598250:CDS
TAGCGCAGTGCATGCTGATT+CGG 0.424289 4_2:+32816635 Msa0598250:CDS
TGAAATGGGTGACCTTGTTC+AGG 0.424346 4_2:+32818050 Msa0598250:CDS
AGCTGACTTACATCAATAGT+TGG 0.424691 4_2:-32818769 None:intergenic
ATACAATTCTAATGACTTTG+AGG 0.424774 4_2:+32816674 Msa0598250:CDS
TAGTATCACTTTGAGATGTT+AGG 0.430171 4_2:+32821063 Msa0598250:three_prime_UTR
GTGCAGCTGGATAGCTTATT+CGG 0.433130 4_2:+32816122 Msa0598250:five_prime_UTR
TGTTCGTCTTTATTATGGAT+TGG 0.438429 4_2:+32819886 Msa0598250:CDS
GATAATATGGGTGCTGAAAT+GGG 0.453441 4_2:+32818036 Msa0598250:CDS
AAAATTAAATTAAATAGAAA+AGG 0.456293 4_2:-32815951 None:intergenic
CTTTCAGATGGTGGAAAAGT+TGG 0.468943 4_2:-32816567 None:intergenic
TTTAGCAGCGATCTTCCTCT+TGG 0.471391 4_2:-32816883 None:intergenic
AATTTGGTTAGGAGAAAGAA+AGG 0.474659 4_2:-32815998 None:intergenic
ACTTATTCAAAACCGTTTGA+AGG 0.475324 4_2:+32816950 Msa0598250:CDS
GGCTTGATTGGACTACTTCG+TGG 0.478283 4_2:+32818173 Msa0598250:CDS
AAGTGTTGAGTGAGAATTCG+AGG 0.479531 4_2:+32816790 Msa0598250:CDS
TGTTTATTGGTGGATACGAC+AGG 0.480869 4_2:+32818241 Msa0598250:CDS
TTGCTTGAATTTCAGACTGA+AGG 0.481748 4_2:+32817858 Msa0598250:intron
TTTCAACTTATGTTTATTGG+TGG 0.482222 4_2:+32818231 Msa0598250:CDS
AGAAGTTTGATTCTTCAAAA+GGG 0.485509 4_2:+32818201 Msa0598250:CDS
TCATTGGTTGAAACAGATAT+GGG 0.486019 4_2:-32815890 None:intergenic
TTCAGACTGAAGGAAAGATT+AGG 0.487299 4_2:+32817868 Msa0598250:intron
GCTCAAAGATATGATAATAT+GGG 0.492997 4_2:+32818024 Msa0598250:CDS
CTTATTCAAAACCGTTTGAA+GGG 0.494758 4_2:+32816951 Msa0598250:CDS
AGTAGACGAGTGGGCTCTAA+AGG 0.498652 4_2:+32819278 Msa0598250:CDS
TGCCCGCTCATTTGCATGAG+AGG 0.499729 4_2:+32818695 Msa0598250:CDS
GTTTGTCGAGAGAAAGAGTA+AGG 0.499968 4_2:+32820622 Msa0598250:CDS
GATTCGGAACAATGGTTTCA+GGG 0.500906 4_2:+32816651 Msa0598250:CDS
TGATGAGGCGACTGTTTCCT+AGG 0.505152 4_2:+32820942 Msa0598250:three_prime_UTR
TGATTCTGCTGCCTTTCAGA+TGG 0.506025 4_2:-32816579 None:intergenic
CTTTCACATATCCCTTCAAA+CGG 0.507198 4_2:-32816962 None:intergenic
GCAAGTTGGACTTGTTGCAT+TGG 0.510251 4_2:+32820644 Msa0598250:CDS
ATATCAATGTTTCAAAAGCA+TGG 0.511850 4_2:-32820706 None:intergenic
CACTCGTCTACTCCATTCCA+TGG 0.516624 4_2:-32819267 None:intergenic
TCAGTCTATCAAGGCACTTA+AGG 0.517482 4_2:+32816599 Msa0598250:CDS
TTTGCTGCAGAAGTCGATGT+TGG 0.520203 4_2:+32816737 Msa0598250:CDS
ATTTATGCTCATCTAAAGAA+AGG 0.522664 4_2:-32817052 None:intergenic
CATGGGAAGACATTAGTAAA+CGG 0.524317 4_2:+32819924 Msa0598250:CDS
AGAGAAAGAGTAAGGCAAGT+TGG 0.524872 4_2:+32820630 Msa0598250:CDS
TTCTGCTGCCTTTCAGATGG+TGG 0.525613 4_2:-32816576 None:intergenic
GCTTGATTGGACTACTTCGT+GGG 0.528031 4_2:+32818174 Msa0598250:CDS
TATTTATTGTTGATATAGAG+TGG 0.529566 4_2:-32816027 None:intergenic
GAAGCATTCCCCTCTCTGAA+TGG 0.535106 4_2:+32819052 Msa0598250:CDS
ATTATCATATCTTTGAGCAA+TGG 0.535824 4_2:-32818019 None:intergenic
TGGATAAAGAATGTCTTACA+TGG 0.535990 4_2:+32819906 Msa0598250:CDS
AGTATAGTAGGAAAATTTGA+TGG 0.536272 4_2:+32816360 Msa0598250:five_prime_UTR
TTTCTCTCTCGCGTTCCACG+AGG 0.537137 4_2:-32819862 None:intergenic
ACGCTGTGATGAGTGTCTCC+TGG 0.542065 4_2:-32819079 None:intergenic
TGCTGAAGTTGTAAAGCTAT+CGG 0.542103 4_2:+32817013 Msa0598250:CDS
ATGGAAAGAAGAGATGTCAT+TGG 0.547029 4_2:-32815906 None:intergenic
AACCTCTCATGCAAATGAGC+GGG 0.548183 4_2:-32818697 None:intergenic
CTCTTGATACAAGTCTTCCT+AGG 0.550932 4_2:-32820959 None:intergenic
AGGAAGATCGCTGCTAAAAG+TGG 0.552288 4_2:+32816888 Msa0598250:CDS
TGCCGCAAGGAAGAGGGAGA+TGG 0.552494 4_2:+32820680 Msa0598250:CDS
ATTTGGTTAGGAGAAAGAAA+GGG 0.553867 4_2:-32815997 None:intergenic
AAAATTTGATGGTATAGTAA+TGG 0.555593 4_2:+32816371 Msa0598250:exon
GCAGCAGTTATTGGATTGAG+TGG 0.555881 4_2:+32816399 Msa0598250:CDS
GCAGCAGAATCAGTCTATCA+AGG 0.560868 4_2:+32816590 Msa0598250:CDS
TAGTAATAGCAGCAGCAAGA+AGG 0.561747 4_2:+32816088 Msa0598250:five_prime_UTR
AACAAAATGAGAACATCCCA+TGG 0.568183 4_2:+32819250 Msa0598250:CDS
AATGAGAACATCCCATGGAA+TGG 0.568965 4_2:+32819255 Msa0598250:CDS
TTCTCTCTCGCGTTCCACGA+GGG 0.570114 4_2:-32819861 None:intergenic
GTTCTGCAGTGATGCAGCTG+AGG 0.571648 4_2:+32816910 Msa0598250:CDS
TGCATGCTGATTCGGAACAA+TGG 0.575895 4_2:+32816643 Msa0598250:CDS
AAAACATGCCGCAAGGAAGA+GGG 0.578890 4_2:+32820674 Msa0598250:CDS
CTTGTTCTGGAGTGTCTGCA+AGG 0.578924 4_2:+32816844 Msa0598250:CDS
GTTGAAACAGATATGGGGAC+CGG 0.580658 4_2:-32815884 None:intergenic
CTATCGGAGAAAATTAAAGC+TGG 0.581933 4_2:+32817029 Msa0598250:CDS
CTAGGAAGACTTGTATCAAG+AGG 0.583578 4_2:+32820960 Msa0598250:three_prime_UTR
TGAGGTTGAAAGTTCTGACA+TGG 0.586396 4_2:+32816692 Msa0598250:CDS
GACGAAAGAGGACGATATGA+GGG 0.586530 4_2:+32820811 Msa0598250:three_prime_UTR
TAAGCTATCCAGCTGCACAC+TGG 0.586853 4_2:-32816117 None:intergenic
AAAGCCTTAATATGTCTCAA+AGG 0.587061 4_2:+32818879 Msa0598250:CDS
CGAAGTTGCAACTTGATCAT+CGG 0.587519 4_2:-32817902 None:intergenic
AGTCGATGTTGGAAAAGCAA+TGG 0.589446 4_2:+32816748 Msa0598250:CDS
CTTTCTATTCCAAAATGATG+AGG 0.591219 4_2:+32820927 Msa0598250:three_prime_UTR
GAGTATAGACTCGAAGAGAG+AGG 0.594019 4_2:+32818739 Msa0598250:CDS
CGTTTGAAGGGATATGTGAA+AGG 0.601034 4_2:+32816963 Msa0598250:CDS
TGTATATATACAGAACAGAA+AGG 0.601909 4_2:+32820750 Msa0598250:three_prime_UTR
TTCCATCTCCCTCTTCCTTG+CGG 0.603171 4_2:-32820682 None:intergenic
CCTGGAAGACCATTCAGAGA+GGG 0.620461 4_2:-32819061 None:intergenic
AAGTCACAGATACCTTCCTC+CGG 0.622152 4_2:-32816824 None:intergenic
ACTCGTCTACTCCATTCCAT+GGG 0.623846 4_2:-32819266 None:intergenic
GCAGTTATTGGATTGAGTGG+AGG 0.629684 4_2:+32816402 Msa0598250:CDS
TCTTTATAATCACCTGAACA+AGG 0.630384 4_2:-32818062 None:intergenic
GTTGCAACTTGATCATCGGA+AGG 0.630637 4_2:-32817898 None:intergenic
CATCACACACCACTCAACTC+CGG 0.634555 4_2:+32815865 Msa0598250:five_prime_UTR
CAGCTGGATAGCTTATTCGG+TGG 0.639966 4_2:+32816125 Msa0598250:five_prime_UTR
CTGGAAGACCATTCAGAGAG+GGG 0.641914 4_2:-32819060 None:intergenic
TAACCTCTCATGCAAATGAG+CGG 0.653968 4_2:-32818698 None:intergenic
GGATAAAGAATGTCTTACAT+GGG 0.654591 4_2:+32819907 Msa0598250:CDS
GAAAGTCAGAAATGCTACTG+AGG 0.657628 4_2:+32818901 Msa0598250:CDS
ATATGGGGACCGGAGTTGAG+TGG 0.658187 4_2:-32815874 None:intergenic
ATGGAATGGAGTAGACGAGT+GGG 0.658580 4_2:+32819269 Msa0598250:CDS
AGAAACTAAAACATGCCGCA+AGG 0.670521 4_2:+32820667 Msa0598250:CDS
ACTCATTAATGTGACCCTCG+TGG 0.676220 4_2:+32819847 Msa0598250:CDS
AAAGAAGAATGACAACCAAG+AGG 0.680979 4_2:+32816868 Msa0598250:CDS
TCCTGGAAGACCATTCAGAG+AGG 0.692795 4_2:-32819062 None:intergenic
CATGGAATGGAGTAGACGAG+TGG 0.696095 4_2:+32819268 Msa0598250:CDS
CATTGGTTGAAACAGATATG+GGG 0.702933 4_2:-32815889 None:intergenic
CGAGTCTATACTCTGCATTG+CGG 0.732447 4_2:-32818729 None:intergenic
AGGAGGAAGTTGATACTGTG+TGG 0.743332 4_2:-32816502 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTAAAGAAACTATTTT+AGG - chr4_2:32818367-32818386 None:intergenic 10.0%
!!! TTATATCAACATTATTATTT+TGG - chr4_2:32819729-32819748 None:intergenic 10.0%
!! AAAATGAATAGATAAAGATA+TGG - chr4_2:32815928-32815947 None:intergenic 15.0%
!! GATAAAAAATAGAAAATGAA+AGG - chr4_2:32815978-32815997 None:intergenic 15.0%
!! TTTCTATAATATCTGAATAA+TGG - chr4_2:32816452-32816471 None:intergenic 15.0%
!!! TAGTTTTCTTTTTTAGTTTA+TGG + chr4_2:32817443-32817462 Msa0598250:intron 15.0%
!! ATTATAAAATAGAAGCTATA+TGG - chr4_2:32818409-32818428 None:intergenic 15.0%
!! AAAACAAAAACAAGAAAAAA+TGG - chr4_2:32818527-32818546 None:intergenic 15.0%
!! ACAAATGGTATTAATATTTA+TGG - chr4_2:32819801-32819820 None:intergenic 15.0%
!!! TGTTAGACAATTTTTTAATT+TGG + chr4_2:32820064-32820083 Msa0598250:intron 15.0%
!!! AATTTAGTATTTGAAATTCT+AGG - chr4_2:32820401-32820420 None:intergenic 15.0%
!! TAGAATTTCAAATACTAAAT+TGG + chr4_2:32820400-32820419 Msa0598250:intron 15.0%
!! TATTTATTGTTGATATAGAG+TGG - chr4_2:32816030-32816049 None:intergenic 20.0%
!! AAAGCTAAAAACAAAGTAAA+TGG - chr4_2:32816229-32816248 None:intergenic 20.0%
!!! AAAATTTGATGGTATAGTAA+TGG + chr4_2:32816371-32816390 Msa0598250:exon 20.0%
!! ATTATTATCGTAAGTAAACA+AGG + chr4_2:32817328-32817347 Msa0598250:intron 20.0%
!! TTATTATCGTAAGTAAACAA+GGG + chr4_2:32817329-32817348 Msa0598250:intron 20.0%
!! ATAAGATACATAAAGTAACA+TGG - chr4_2:32817734-32817753 None:intergenic 20.0%
!! AGTCAATTTACAAAATTATC+TGG - chr4_2:32817776-32817795 None:intergenic 20.0%
!! AGATTTCAACTTATGTTTAT+TGG + chr4_2:32818228-32818247 Msa0598250:CDS 20.0%
!!! GTTTTTGTTTTCATTAGTTT+CGG + chr4_2:32818536-32818555 Msa0598250:intron 20.0%
!!! TATTTTTGGGAAAAATACAA+AGG - chr4_2:32819181-32819200 None:intergenic 20.0%
!!! ATGAGACAATTGATATTTTT+GGG - chr4_2:32819194-32819213 None:intergenic 20.0%
!!! AATGAGACAATTGATATTTT+TGG - chr4_2:32819195-32819214 None:intergenic 20.0%
!! AAAGGTAATAAGCAAAATAT+CGG + chr4_2:32819296-32819315 Msa0598250:intron 20.0%
!!! AATTATGTGCGTAAATTTTA+TGG + chr4_2:32819425-32819444 Msa0598250:intron 20.0%
!! AAAATTGATGTATTCGAAAT+GGG + chr4_2:32819485-32819504 Msa0598250:intron 20.0%
!! ATACAACAAAAAGTAATTAG+TGG - chr4_2:32819522-32819541 None:intergenic 20.0%
!!! TCAGCATTTTTCAATTTAAT+AGG - chr4_2:32819664-32819683 None:intergenic 20.0%
!! TACCATTTGTAAATATTTAC+AGG + chr4_2:32819811-32819830 Msa0598250:intron 20.0%
!! TTCCTGTAAATATTTACAAA+TGG - chr4_2:32819816-32819835 None:intergenic 20.0%
!!! TATCATCGTATAATTTTACT+CGG - chr4_2:32819997-32820016 None:intergenic 20.0%
!! AACAATTACATGGATAAAAT+TGG - chr4_2:32820042-32820061 None:intergenic 20.0%
!! TTCAAAATGATTCATGAAAT+TGG + chr4_2:32820103-32820122 Msa0598250:intron 20.0%
!! GAAATTAACGAAATTCTAAA+GGG - chr4_2:32820361-32820380 None:intergenic 20.0%
!! TGAAATTAACGAAATTCTAA+AGG - chr4_2:32820362-32820381 None:intergenic 20.0%
!! AGAATTTCGTTAATTTCATA+AGG + chr4_2:32820364-32820383 Msa0598250:intron 20.0%
!! TTACGTAAAAATTTATGCTA+TGG - chr4_2:32820454-32820473 None:intergenic 20.0%
!!! TGTTTTATCAAAAATGTTGA+AGG + chr4_2:32820884-32820903 Msa0598250:three_prime_UTR 20.0%
!! AACTAATAATGAGAAGAAAA+AGG - chr4_2:32821124-32821143 None:intergenic 20.0%
! TATAGAGTGGAAGTTAAATT+TGG - chr4_2:32816017-32816036 None:intergenic 25.0%
!!! TGCATAGTTGCAATTTTTTA+AGG + chr4_2:32816175-32816194 Msa0598250:five_prime_UTR 25.0%
!!! GTATATGATATTTTTGTGAG+TGG - chr4_2:32816207-32816226 None:intergenic 25.0%
!! CAGTTTATTGATAGTATAGT+AGG + chr4_2:32816348-32816367 Msa0598250:five_prime_UTR 25.0%
! AGTATAGTAGGAAAATTTGA+TGG + chr4_2:32816360-32816379 Msa0598250:five_prime_UTR 25.0%
! ATACAATTCTAATGACTTTG+AGG + chr4_2:32816674-32816693 Msa0598250:CDS 25.0%
! ATTTATGCTCATCTAAAGAA+AGG - chr4_2:32817055-32817074 None:intergenic 25.0%
! CTTCTACAATTACACAATTA+TGG - chr4_2:32817174-32817193 None:intergenic 25.0%
! TTCTTAAGTTAAGCAATCTT+TGG + chr4_2:32817207-32817226 Msa0598250:intron 25.0%
! GACAATGAAATAATTGCATT+AGG + chr4_2:32817607-32817626 Msa0598250:intron 25.0%
! TATGTATCTTATATCGTTTG+AGG + chr4_2:32817742-32817761 Msa0598250:intron 25.0%
! ATGTATCTTATATCGTTTGA+GGG + chr4_2:32817743-32817762 Msa0598250:intron 25.0%
! CAATTTACAAAATTATCTGG+CGG - chr4_2:32817773-32817792 None:intergenic 25.0%
!!! TAAATTGACTTCTTTTCTTG+TGG + chr4_2:32817786-32817805 Msa0598250:intron 25.0%
! ATTATCATATCTTTGAGCAA+TGG - chr4_2:32818022-32818041 None:intergenic 25.0%
! TGCTCAAAGATATGATAATA+TGG + chr4_2:32818023-32818042 Msa0598250:CDS 25.0%
! GCTCAAAGATATGATAATAT+GGG + chr4_2:32818024-32818043 Msa0598250:CDS 25.0%
! AGAAGTTTGATTCTTCAAAA+GGG + chr4_2:32818201-32818220 Msa0598250:CDS 25.0%
! TTTCAACTTATGTTTATTGG+TGG + chr4_2:32818231-32818250 Msa0598250:CDS 25.0%
! CTGATTTATTGCAGAAATTA+TGG - chr4_2:32818454-32818473 None:intergenic 25.0%
! TGCAATTCTCTACAAAATAA+GGG - chr4_2:32818858-32818877 None:intergenic 25.0%
! TTGCAATTCTCTACAAAATA+AGG - chr4_2:32818859-32818878 None:intergenic 25.0%
! GATATTACATTAAGTGTATG+TGG - chr4_2:32818954-32818973 None:intergenic 25.0%
!!! TTTTTTCTACAAATCCATCA+CGG + chr4_2:32819118-32819137 Msa0598250:intron 25.0%
! TTTACGCACATAATTAAAGA+AGG - chr4_2:32819420-32819439 None:intergenic 25.0%
! CAAAATTGATGTATTCGAAA+TGG + chr4_2:32819484-32819503 Msa0598250:intron 25.0%
!! TTTGTTGTATAAGAACAATC+AGG + chr4_2:32819532-32819551 Msa0598250:intron 25.0%
! ATAAAGTTCAGCTATGTATT+AGG - chr4_2:32819558-32819577 None:intergenic 25.0%
! TGCATATAATCAATATCACT+TGG + chr4_2:32819590-32819609 Msa0598250:intron 25.0%
!!! CAACATTATTATTTTGGTGT+AGG - chr4_2:32819723-32819742 None:intergenic 25.0%
! GAAATTGTTCGTCTTTATTA+TGG + chr4_2:32819881-32819900 Msa0598250:CDS 25.0%
! AAAGAAGTAACAAAATGTCA+CGG - chr4_2:32819959-32819978 None:intergenic 25.0%
!! TTGGAAATTTTCTTTTACTC+AGG + chr4_2:32820122-32820141 Msa0598250:intron 25.0%
! GATAATATCAAGGACTAAAT+TGG - chr4_2:32820150-32820169 None:intergenic 25.0%
! GTTTCTGTAAGATAATATCA+AGG - chr4_2:32820160-32820179 None:intergenic 25.0%
! TCTAAAGGGCAAAAAAAAAA+GGG - chr4_2:32820347-32820366 None:intergenic 25.0%
!! TTCTAAAGGGCAAAAAAAAA+AGG - chr4_2:32820348-32820367 None:intergenic 25.0%
! ATATCAATGTTTCAAAAGCA+TGG - chr4_2:32820709-32820728 None:intergenic 25.0%
! TGTATATATACAGAACAGAA+AGG + chr4_2:32820750-32820769 Msa0598250:three_prime_UTR 25.0%
!! TCCAAAAGACAATATTTTCA+GGG - chr4_2:32820857-32820876 None:intergenic 25.0%
! TCATTGGTTGAAACAGATAT+GGG - chr4_2:32815893-32815912 None:intergenic 30.0%
ATTTGGTTAGGAGAAAGAAA+GGG - chr4_2:32816000-32816019 None:intergenic 30.0%
AATTTGGTTAGGAGAAAGAA+AGG - chr4_2:32816001-32816020 None:intergenic 30.0%
AGTGGAAGTTAAATTTGGTT+AGG - chr4_2:32816012-32816031 None:intergenic 30.0%
!! CTTTTTGTTTATCAGAGCTT+GGG + chr4_2:32816303-32816322 Msa0598250:intron 30.0%
!! ACTATTACAGATTTTGAAGG+AGG - chr4_2:32816522-32816541 None:intergenic 30.0%
! GCAACTATTACAGATTTTGA+AGG - chr4_2:32816525-32816544 None:intergenic 30.0%
! TTCTGACATGGATTATTCAT+TGG + chr4_2:32816704-32816723 Msa0598250:CDS 30.0%
AATGGAGTCTTTCATTTGAA+AGG + chr4_2:32816766-32816785 Msa0598250:CDS 30.0%
!!! AAACGGTTTTGAATAAGTTC+GGG - chr4_2:32816948-32816967 None:intergenic 30.0%
!!! CAAACGGTTTTGAATAAGTT+CGG - chr4_2:32816949-32816968 None:intergenic 30.0%
ACTTATTCAAAACCGTTTGA+AGG + chr4_2:32816950-32816969 Msa0598250:CDS 30.0%
CTTATTCAAAACCGTTTGAA+GGG + chr4_2:32816951-32816970 Msa0598250:CDS 30.0%
CTTTAGATGAGCATAAATCT+AGG + chr4_2:32817057-32817076 Msa0598250:CDS 30.0%
TAATTAATTGCCTGCATTGT+TGG + chr4_2:32817080-32817099 Msa0598250:intron 30.0%
ATTAATCCTACAACTGAATG+AGG + chr4_2:32817289-32817308 Msa0598250:intron 30.0%
ATCAAATATTTGCCTCACAT+TGG + chr4_2:32817547-32817566 Msa0598250:intron 30.0%
GCAATATATTGTTGGAATGA+AGG - chr4_2:32817579-32817598 None:intergenic 30.0%
TCATTCCAACAATATATTGC+TGG + chr4_2:32817579-32817598 Msa0598250:intron 30.0%
ATTGCATTAGGATGTACTAT+AGG + chr4_2:32817619-32817638 Msa0598250:intron 30.0%
TTGCATTAGGATGTACTATA+GGG + chr4_2:32817620-32817639 Msa0598250:intron 30.0%
TCTTTATAATCACCTGAACA+AGG - chr4_2:32818065-32818084 None:intergenic 30.0%
GAAGATATGAGGTTAAAACA+TGG - chr4_2:32818091-32818110 None:intergenic 30.0%
AACAAAGCTAAGAAGATATG+AGG - chr4_2:32818102-32818121 None:intergenic 30.0%
!!! ACTCACATTGCTTTTTCTAT+AGG + chr4_2:32818148-32818167 Msa0598250:intron 30.0%
!!! CTCACATTGCTTTTTCTATA+GGG + chr4_2:32818149-32818168 Msa0598250:intron 30.0%
GAGAAGTTTGATTCTTCAAA+AGG + chr4_2:32818200-32818219 Msa0598250:CDS 30.0%
AATTGTCGTAAATTCACCAA+TGG + chr4_2:32818301-32818320 Msa0598250:intron 30.0%
TCAGCACAATTATTTAGTGA+CGG - chr4_2:32818629-32818648 None:intergenic 30.0%
! ACTAAATAATTGTGCTGACA+GGG + chr4_2:32818631-32818650 Msa0598250:intron 30.0%
AAAGCCTTAATATGTCTCAA+AGG + chr4_2:32818879-32818898 Msa0598250:CDS 30.0%
!! CTTTCCTTTGAGACATATTA+AGG - chr4_2:32818886-32818905 None:intergenic 30.0%
! CAAAGTTTTCTCCTTAGATA+GGG + chr4_2:32819030-32819049 Msa0598250:CDS 30.0%
TGGGAAAAATACAAAGGAAA+AGG - chr4_2:32819175-32819194 None:intergenic 30.0%
!! TTTGATATAAAGAGCATTGC+AGG - chr4_2:32819397-32819416 None:intergenic 30.0%
AAATGCTGAATGAGCAAAAA+AGG + chr4_2:32819675-32819694 Msa0598250:intron 30.0%
TGTTCGTCTTTATTATGGAT+TGG + chr4_2:32819886-32819905 Msa0598250:CDS 30.0%
TGGATAAAGAATGTCTTACA+TGG + chr4_2:32819906-32819925 Msa0598250:CDS 30.0%
GGATAAAGAATGTCTTACAT+GGG + chr4_2:32819907-32819926 Msa0598250:CDS 30.0%
ACGATGATACATCATCTTAT+TGG + chr4_2:32820008-32820027 Msa0598250:intron 30.0%
CGATGATACATCATCTTATT+GGG + chr4_2:32820009-32820028 Msa0598250:intron 30.0%
GTCTAACACTAACAATTACA+TGG - chr4_2:32820052-32820071 None:intergenic 30.0%
!!! CATTTTAGAATATCGTTACC+TGG + chr4_2:32820217-32820236 Msa0598250:intron 30.0%
!!! CTCTTTCGTCTATTTTTATC+AGG - chr4_2:32820801-32820820 None:intergenic 30.0%
CTGATAAAAATAGACGAAAG+AGG + chr4_2:32820799-32820818 Msa0598250:three_prime_UTR 30.0%
!! CAAAAGACAATATTTTCAGG+GGG - chr4_2:32820855-32820874 None:intergenic 30.0%
! CCAAAAGACAATATTTTCAG+GGG - chr4_2:32820856-32820875 None:intergenic 30.0%
! CTCCAAAAGACAATATTTTC+AGG - chr4_2:32820858-32820877 None:intergenic 30.0%
CTTTCTATTCCAAAATGATG+AGG + chr4_2:32820927-32820946 Msa0598250:three_prime_UTR 30.0%
!! TAGTATCACTTTGAGATGTT+AGG + chr4_2:32821063-32821082 Msa0598250:three_prime_UTR 30.0%
! CATTGGTTGAAACAGATATG+GGG - chr4_2:32815892-32815911 None:intergenic 35.0%
! GTCATTGGTTGAAACAGATA+TGG - chr4_2:32815894-32815913 None:intergenic 35.0%
ATGGAAAGAAGAGATGTCAT+TGG - chr4_2:32815909-32815928 None:intergenic 35.0%
!! GCTTTTTGTTTATCAGAGCT+TGG + chr4_2:32816302-32816321 Msa0598250:intron 35.0%
! GGGAAGTTTCTGAAAGAAAT+AGG + chr4_2:32816323-32816342 Msa0598250:five_prime_UTR 35.0%
! TCTCATGCATCATGTGATTT+TGG + chr4_2:32816477-32816496 Msa0598250:CDS 35.0%
ATTCGAGGAGAGAAAAAATC+CGG + chr4_2:32816805-32816824 Msa0598250:CDS 35.0%
AAAGAAGAATGACAACCAAG+AGG + chr4_2:32816868-32816887 Msa0598250:CDS 35.0%
CTTTCACATATCCCTTCAAA+CGG - chr4_2:32816965-32816984 None:intergenic 35.0%
TGCTGAAGTTGTAAAGCTAT+CGG + chr4_2:32817013-32817032 Msa0598250:CDS 35.0%
CTATCGGAGAAAATTAAAGC+TGG + chr4_2:32817029-32817048 Msa0598250:CDS 35.0%
ATTACGAAAACCAACAATGC+AGG - chr4_2:32817093-32817112 None:intergenic 35.0%
CACGTTTGAATGATCAATCA+TGG + chr4_2:32817264-32817283 Msa0598250:intron 35.0%
CTAATTCCTCATTCAGTTGT+AGG - chr4_2:32817298-32817317 None:intergenic 35.0%
AACAAGGGTTCTATCATTCT+CGG + chr4_2:32817344-32817363 Msa0598250:intron 35.0%
! AGTGAACTGAACATTTTTGC+AGG + chr4_2:32817473-32817492 Msa0598250:intron 35.0%
TTCCAACAATATATTGCTGG+TGG + chr4_2:32817582-32817601 Msa0598250:intron 35.0%
TACCACCAGCAATATATTGT+TGG - chr4_2:32817587-32817606 None:intergenic 35.0%
TTGCTTGAATTTCAGACTGA+AGG + chr4_2:32817858-32817877 Msa0598250:intron 35.0%
TTCAGACTGAAGGAAAGATT+AGG + chr4_2:32817868-32817887 Msa0598250:intron 35.0%
!! TGATAATATGGGTGCTGAAA+TGG + chr4_2:32818035-32818054 Msa0598250:CDS 35.0%
!! GATAATATGGGTGCTGAAAT+GGG + chr4_2:32818036-32818055 Msa0598250:CDS 35.0%
TAGAAAAAGCAATGTGAGTG+CGG - chr4_2:32818147-32818166 None:intergenic 35.0%
!!! ACATTGCTTTTTCTATAGGG+TGG + chr4_2:32818152-32818171 Msa0598250:intron 35.0%
TAAATTCACCAATGGATGCA+AGG + chr4_2:32818309-32818328 Msa0598250:intron 35.0%
GCAGAAATTATGGCTCAAAA+TGG - chr4_2:32818444-32818463 None:intergenic 35.0%
!!! TGTTTTGAGAAATCTGTGCA+AGG + chr4_2:32818574-32818593 Msa0598250:intron 35.0%
!!! GTTTTGAGAAATCTGTGCAA+GGG + chr4_2:32818575-32818594 Msa0598250:intron 35.0%
! CACTAAATAATTGTGCTGAC+AGG + chr4_2:32818630-32818649 Msa0598250:intron 35.0%
! AGCTGACTTACATCAATAGT+TGG - chr4_2:32818772-32818791 None:intergenic 35.0%
! GCAAAGTTTTCTCCTTAGAT+AGG + chr4_2:32819029-32819048 Msa0598250:CDS 35.0%
AACAAAATGAGAACATCCCA+TGG + chr4_2:32819250-32819269 Msa0598250:CDS 35.0%
TTATGCTTTGCAATCAAGAC+AGG - chr4_2:32819329-32819348 None:intergenic 35.0%
GTAGAGTATGTTATGACATC+AGG + chr4_2:32819447-32819466 Msa0598250:intron 35.0%
CAATTTAATAGGCTCTCTCA+TGG - chr4_2:32819653-32819672 None:intergenic 35.0%
CATGGGAAGACATTAGTAAA+CGG + chr4_2:32819924-32819943 Msa0598250:CDS 35.0%
! TCGTATAATTTTACTCGGCA+AGG - chr4_2:32819992-32820011 None:intergenic 35.0%
TACTAAATTGGCGATTCACT+AGG + chr4_2:32820412-32820431 Msa0598250:intron 35.0%
TGCTATGGATGAATCAGATA+AGG - chr4_2:32820439-32820458 None:intergenic 35.0%
TGTTCAGAACGTACATTTGA+TGG + chr4_2:32820480-32820499 Msa0598250:intron 35.0%
! TTGTGTTATTCCTACAGGAT+AGG + chr4_2:32820600-32820619 Msa0598250:intron 35.0%
! CCCCTGAAAATATTGTCTTT+TGG + chr4_2:32820853-32820872 Msa0598250:three_prime_UTR 35.0%
TAGTAATAGCAGCAGCAAGA+AGG + chr4_2:32816088-32816107 Msa0598250:five_prime_UTR 40.0%
!! CTTTCAGATGGTGGAAAAGT+TGG - chr4_2:32816570-32816589 None:intergenic 40.0%
! CAACTTTTCCACCATCTGAA+AGG + chr4_2:32816568-32816587 Msa0598250:CDS 40.0%
! TCAGTCTATCAAGGCACTTA+AGG + chr4_2:32816599-32816618 Msa0598250:CDS 40.0%
! TGATTCGGAACAATGGTTTC+AGG + chr4_2:32816650-32816669 Msa0598250:CDS 40.0%
GATTCGGAACAATGGTTTCA+GGG + chr4_2:32816651-32816670 Msa0598250:CDS 40.0%
! TGAGGTTGAAAGTTCTGACA+TGG + chr4_2:32816692-32816711 Msa0598250:CDS 40.0%
AGTCGATGTTGGAAAAGCAA+TGG + chr4_2:32816748-32816767 Msa0598250:CDS 40.0%
!! AAGTGTTGAGTGAGAATTCG+AGG + chr4_2:32816790-32816809 Msa0598250:CDS 40.0%
!! AAGGTATCTGTGACTTGTTC+TGG + chr4_2:32816831-32816850 Msa0598250:CDS 40.0%
CGTTTGAAGGGATATGTGAA+AGG + chr4_2:32816963-32816982 Msa0598250:CDS 40.0%
!! GTCTTCAACATTGACTTTCG+AGG - chr4_2:32817422-32817441 None:intergenic 40.0%
! GAACTGAACATTTTTGCAGG+TGG + chr4_2:32817476-32817495 Msa0598250:intron 40.0%
TGAAGGCTAAAACCAATGTG+AGG - chr4_2:32817562-32817581 None:intergenic 40.0%
CGAAGTTGCAACTTGATCAT+CGG - chr4_2:32817905-32817924 None:intergenic 40.0%
TTTCTATAGGGTGGCTTGAT+TGG + chr4_2:32818161-32818180 Msa0598250:intron 40.0%
! TGTTTATTGGTGGATACGAC+AGG + chr4_2:32818241-32818260 Msa0598250:CDS 40.0%
GCACAATTATTTAGTGACGG+TGG - chr4_2:32818626-32818645 None:intergenic 40.0%
TAACCTCTCATGCAAATGAG+CGG - chr4_2:32818701-32818720 None:intergenic 40.0%
GAAAGTCAGAAATGCTACTG+AGG + chr4_2:32818901-32818920 Msa0598250:CDS 40.0%
CGTGTGTATATTCGTATTGC+AGG + chr4_2:32819000-32819019 Msa0598250:intron 40.0%
AATCCATCACGGAAGATCAT+TGG + chr4_2:32819129-32819148 Msa0598250:intron 40.0%
AATCCAATGATCTTCCGTGA+TGG - chr4_2:32819135-32819154 None:intergenic 40.0%
AATGAGAACATCCCATGGAA+TGG + chr4_2:32819255-32819274 Msa0598250:CDS 40.0%
!! AAAGAGCATTGCAGGATAGA+AGG - chr4_2:32819389-32819408 None:intergenic 40.0%
! ATTTTACTCGGCAAGGACAT+TGG - chr4_2:32819985-32820004 None:intergenic 40.0%
AACAGCCTCTTGTGTAAAAC+AGG + chr4_2:32820241-32820260 Msa0598250:intron 40.0%
ACAGCCTCTTGTGTAAAACA+GGG + chr4_2:32820242-32820261 Msa0598250:intron 40.0%
! CTTACCCTGTTTTACACAAG+AGG - chr4_2:32820249-32820268 None:intergenic 40.0%
CTCTTGTGTAAAACAGGGTA+AGG + chr4_2:32820247-32820266 Msa0598250:intron 40.0%
CGTACAATACACCAAATGGT+GGG + chr4_2:32820273-32820292 Msa0598250:intron 40.0%
GCAAAAAAAAAAGGGCAACC+CGG - chr4_2:32820339-32820358 None:intergenic 40.0%
! GACTCTTGTGTTATTCCTAC+AGG + chr4_2:32820595-32820614 Msa0598250:intron 40.0%
GTTTGTCGAGAGAAAGAGTA+AGG + chr4_2:32820622-32820641 Msa0598250:CDS 40.0%
AGAGAAAGAGTAAGGCAAGT+TGG + chr4_2:32820630-32820649 Msa0598250:CDS 40.0%
AGAAACTAAAACATGCCGCA+AGG + chr4_2:32820667-32820686 Msa0598250:CDS 40.0%
! AAACAGTCGCCTCATCATTT+TGG - chr4_2:32820939-32820958 None:intergenic 40.0%
CTCTTGATACAAGTCTTCCT+AGG - chr4_2:32820962-32820981 None:intergenic 40.0%
CTAGGAAGACTTGTATCAAG+AGG + chr4_2:32820960-32820979 Msa0598250:three_prime_UTR 40.0%
GTTGAAACAGATATGGGGAC+CGG - chr4_2:32815887-32815906 None:intergenic 45.0%
GTGCAGCTGGATAGCTTATT+CGG + chr4_2:32816122-32816141 Msa0598250:five_prime_UTR 45.0%
ATGGCTACTGCAGCAGTTAT+TGG + chr4_2:32816390-32816409 Msa0598250:CDS 45.0%
GCAGCAGTTATTGGATTGAG+TGG + chr4_2:32816399-32816418 Msa0598250:CDS 45.0%
GCAGTTATTGGATTGAGTGG+AGG + chr4_2:32816402-32816421 Msa0598250:CDS 45.0%
!! AGGAGGAAGTTGATACTGTG+TGG - chr4_2:32816505-32816524 None:intergenic 45.0%
TGATTCTGCTGCCTTTCAGA+TGG - chr4_2:32816582-32816601 None:intergenic 45.0%
GCAGCAGAATCAGTCTATCA+AGG + chr4_2:32816590-32816609 Msa0598250:CDS 45.0%
!! TGCATGCTGATTCGGAACAA+TGG + chr4_2:32816643-32816662 Msa0598250:CDS 45.0%
TTTGCTGCAGAAGTCGATGT+TGG + chr4_2:32816737-32816756 Msa0598250:CDS 45.0%
GAGAGAAAAAATCCGGAGGA+AGG + chr4_2:32816812-32816831 Msa0598250:CDS 45.0%
AAGTCACAGATACCTTCCTC+CGG - chr4_2:32816827-32816846 None:intergenic 45.0%
TTTAGCAGCGATCTTCCTCT+TGG - chr4_2:32816886-32816905 None:intergenic 45.0%
AGGAAGATCGCTGCTAAAAG+TGG + chr4_2:32816888-32816907 Msa0598250:CDS 45.0%
GTTGCAACTTGATCATCGGA+AGG - chr4_2:32817901-32817920 None:intergenic 45.0%
TGAAATGGGTGACCTTGTTC+AGG + chr4_2:32818050-32818069 Msa0598250:CDS 45.0%
GCTTGATTGGACTACTTCGT+GGG + chr4_2:32818174-32818193 Msa0598250:CDS 45.0%
TCTACTGTCCTTGCATCCAT+TGG - chr4_2:32818320-32818339 None:intergenic 45.0%
ATGGATGCAAGGACAGTAGA+TGG + chr4_2:32818320-32818339 Msa0598250:intron 45.0%
TGGATGCAAGGACAGTAGAT+GGG + chr4_2:32818321-32818340 Msa0598250:intron 45.0%
AACCTCTCATGCAAATGAGC+GGG - chr4_2:32818700-32818719 None:intergenic 45.0%
CGAGTCTATACTCTGCATTG+CGG - chr4_2:32818732-32818751 None:intergenic 45.0%
GAGTATAGACTCGAAGAGAG+AGG + chr4_2:32818739-32818758 Msa0598250:CDS 45.0%
ACTCGTCTACTCCATTCCAT+GGG - chr4_2:32819269-32819288 None:intergenic 45.0%
ATGGAATGGAGTAGACGAGT+GGG + chr4_2:32819269-32819288 Msa0598250:CDS 45.0%
! TCACTTGGTGAGAGAAGACT+TGG + chr4_2:32819605-32819624 Msa0598250:intron 45.0%
ATAGGCTCTCTCATGGCTTT+AGG - chr4_2:32819646-32819665 None:intergenic 45.0%
ACTCATTAATGTGACCCTCG+TGG + chr4_2:32819847-32819866 Msa0598250:CDS 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - chr4_2:32820238-32820257 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG + chr4_2:32820269-32820288 Msa0598250:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr4_2:32820272-32820291 Msa0598250:intron 45.0%
TCTCGACAAACCTATCCTGT+AGG - chr4_2:32820613-32820632 None:intergenic 45.0%
!! GCAAGTTGGACTTGTTGCAT+TGG + chr4_2:32820644-32820663 Msa0598250:CDS 45.0%
TAAAACATGCCGCAAGGAAG+AGG + chr4_2:32820673-32820692 Msa0598250:CDS 45.0%
AAAACATGCCGCAAGGAAGA+GGG + chr4_2:32820674-32820693 Msa0598250:CDS 45.0%
AGACGAAAGAGGACGATATG+AGG + chr4_2:32820810-32820829 Msa0598250:three_prime_UTR 45.0%
GACGAAAGAGGACGATATGA+GGG + chr4_2:32820811-32820830 Msa0598250:three_prime_UTR 45.0%
!! AAAATTAAATTAAATAGAAA+AGG - chr4_2:32815954-32815973 None:intergenic 5.0%
CATCACACACCACTCAACTC+CGG + chr4_2:32815865-32815884 Msa0598250:five_prime_UTR 50.0%
!!! GGTTTTTTCCAGTGTGCAGC+TGG + chr4_2:32816109-32816128 Msa0598250:five_prime_UTR 50.0%
TAAGCTATCCAGCTGCACAC+TGG - chr4_2:32816120-32816139 None:intergenic 50.0%
CAGCTGGATAGCTTATTCGG+TGG + chr4_2:32816125-32816144 Msa0598250:five_prime_UTR 50.0%
TTCTGCTGCCTTTCAGATGG+TGG - chr4_2:32816579-32816598 None:intergenic 50.0%
! TAGCGCAGTGCATGCTGATT+CGG + chr4_2:32816635-32816654 Msa0598250:CDS 50.0%
CGAGGAGAGAAAAAATCCGG+AGG + chr4_2:32816808-32816827 Msa0598250:CDS 50.0%
!! CTTGTTCTGGAGTGTCTGCA+AGG + chr4_2:32816844-32816863 Msa0598250:CDS 50.0%
! TGCGGAGTGTTTGTCAACAG+AGG - chr4_2:32818129-32818148 None:intergenic 50.0%
GGCTTGATTGGACTACTTCG+TGG + chr4_2:32818173-32818192 Msa0598250:CDS 50.0%
! ATTGGTGGATACGACAGGTG+AGG + chr4_2:32818246-32818265 Msa0598250:intron 50.0%
GGGGAATGCTTCCCTATCTA+AGG - chr4_2:32819044-32819063 None:intergenic 50.0%
! GAAGCATTCCCCTCTCTGAA+TGG + chr4_2:32819052-32819071 Msa0598250:CDS 50.0%
CTGGAAGACCATTCAGAGAG+GGG - chr4_2:32819063-32819082 None:intergenic 50.0%
CCTGGAAGACCATTCAGAGA+GGG - chr4_2:32819064-32819083 None:intergenic 50.0%
TCCTGGAAGACCATTCAGAG+AGG - chr4_2:32819065-32819084 None:intergenic 50.0%
CACTCGTCTACTCCATTCCA+TGG - chr4_2:32819270-32819289 None:intergenic 50.0%
CATGGAATGGAGTAGACGAG+TGG + chr4_2:32819268-32819287 Msa0598250:CDS 50.0%
! AGTAGACGAGTGGGCTCTAA+AGG + chr4_2:32819278-32819297 Msa0598250:CDS 50.0%
TTCCATCTCCCTCTTCCTTG+CGG - chr4_2:32820685-32820704 None:intergenic 50.0%
TGATGAGGCGACTGTTTCCT+AGG + chr4_2:32820942-32820961 Msa0598250:three_prime_UTR 50.0%
ATATGGGGACCGGAGTTGAG+TGG - chr4_2:32815877-32815896 None:intergenic 55.0%
GTTCTGCAGTGATGCAGCTG+AGG + chr4_2:32816910-32816929 Msa0598250:CDS 55.0%
TGCCCGCTCATTTGCATGAG+AGG + chr4_2:32818695-32818714 Msa0598250:CDS 55.0%
CCCTCTCTGAATGGTCTTCC+AGG + chr4_2:32819061-32819080 Msa0598250:CDS 55.0%
ACGCTGTGATGAGTGTCTCC+TGG - chr4_2:32819082-32819101 None:intergenic 55.0%
TTCTCTCTCGCGTTCCACGA+GGG - chr4_2:32819864-32819883 None:intergenic 55.0%
TTTCTCTCTCGCGTTCCACG+AGG - chr4_2:32819865-32819884 None:intergenic 55.0%
CTAGAGCTCCCGCATATGCA+GGG - chr4_2:32820312-32820331 None:intergenic 55.0%
ACTAGAGCTCCCGCATATGC+AGG - chr4_2:32820313-32820332 None:intergenic 55.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr4_2:32820285-32820304 Msa0598250:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG - chr4_2:32820300-32820319 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG - chr4_2:32820301-32820320 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG + chr4_2:32820300-32820319 Msa0598250:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG + chr4_2:32820301-32820320 Msa0598250:intron 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG + chr4_2:32820317-32820336 Msa0598250:intron 60.0%
TGCCGCAAGGAAGAGGGAGA+TGG + chr4_2:32820680-32820699 Msa0598250:CDS 60.0%
CGGGAAGGGGTCCCACCATT+TGG - chr4_2:32820287-32820306 None:intergenic 65.0%
CGCATATGCAGGGTCCGGGA+AGG - chr4_2:32820302-32820321 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG - chr4_2:32820306-32820325 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG - chr4_2:32820307-32820326 None:intergenic 65.0%
! TGCGGGAGCTCTAGTGCACC+GGG + chr4_2:32820318-32820337 Msa0598250:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 32815850 32821150 32815850 ID=Msa0598250;Name=Msa0598250
chr4_2 mRNA 32815850 32821150 32815850 ID=Msa0598250-mRNA-1;Parent=Msa0598250;Name=Msa0598250-mRNA-1;_AED=0.04;_eAED=0.04;_QI=419|1|1|1|0.88|0.8|10|425|508
chr4_2 exon 32815850 32816196 32815850 ID=Msa0598250-mRNA-1:exon:7915;Parent=Msa0598250-mRNA-1
chr4_2 exon 32816318 32817078 32816318 ID=Msa0598250-mRNA-1:exon:7916;Parent=Msa0598250-mRNA-1
chr4_2 exon 32817873 32818071 32817873 ID=Msa0598250-mRNA-1:exon:7917;Parent=Msa0598250-mRNA-1
chr4_2 exon 32818170 32818262 32818170 ID=Msa0598250-mRNA-1:exon:7918;Parent=Msa0598250-mRNA-1
chr4_2 exon 32818652 32818780 32818652 ID=Msa0598250-mRNA-1:exon:7919;Parent=Msa0598250-mRNA-1
chr4_2 exon 32818869 32818922 32818869 ID=Msa0598250-mRNA-1:exon:7920;Parent=Msa0598250-mRNA-1
chr4_2 exon 32819022 32819099 32819022 ID=Msa0598250-mRNA-1:exon:7921;Parent=Msa0598250-mRNA-1
chr4_2 exon 32819237 32819299 32819237 ID=Msa0598250-mRNA-1:exon:7922;Parent=Msa0598250-mRNA-1
chr4_2 exon 32819833 32819945 32819833 ID=Msa0598250-mRNA-1:exon:7923;Parent=Msa0598250-mRNA-1
chr4_2 exon 32820617 32821150 32820617 ID=Msa0598250-mRNA-1:exon:7924;Parent=Msa0598250-mRNA-1
chr4_2 five_prime_UTR 32815850 32816196 32815850 ID=Msa0598250-mRNA-1:five_prime_utr;Parent=Msa0598250-mRNA-1
chr4_2 five_prime_UTR 32816318 32816389 32816318 ID=Msa0598250-mRNA-1:five_prime_utr;Parent=Msa0598250-mRNA-1
chr4_2 CDS 32816390 32817078 32816390 ID=Msa0598250-mRNA-1:cds;Parent=Msa0598250-mRNA-1
chr4_2 CDS 32817873 32818071 32817873 ID=Msa0598250-mRNA-1:cds;Parent=Msa0598250-mRNA-1
chr4_2 CDS 32818170 32818262 32818170 ID=Msa0598250-mRNA-1:cds;Parent=Msa0598250-mRNA-1
chr4_2 CDS 32818652 32818780 32818652 ID=Msa0598250-mRNA-1:cds;Parent=Msa0598250-mRNA-1
chr4_2 CDS 32818869 32818922 32818869 ID=Msa0598250-mRNA-1:cds;Parent=Msa0598250-mRNA-1
chr4_2 CDS 32819022 32819099 32819022 ID=Msa0598250-mRNA-1:cds;Parent=Msa0598250-mRNA-1
chr4_2 CDS 32819237 32819299 32819237 ID=Msa0598250-mRNA-1:cds;Parent=Msa0598250-mRNA-1
chr4_2 CDS 32819833 32819945 32819833 ID=Msa0598250-mRNA-1:cds;Parent=Msa0598250-mRNA-1
chr4_2 CDS 32820617 32820725 32820617 ID=Msa0598250-mRNA-1:cds;Parent=Msa0598250-mRNA-1
chr4_2 three_prime_UTR 32820726 32821150 32820726 ID=Msa0598250-mRNA-1:three_prime_utr;Parent=Msa0598250-mRNA-1
Gene Sequence

>Msa0598250

ATGGCTACTGCAGCAGTTATTGGATTGAGTGGAGGAAAGAGACTATTGAGTTCATCTTACCATTATTCAGATATTATAGAAAAGTTTTCTCATGCATCATGTGATTTTGGTTCCACACAGTATCAACTTCCTCCTTCAAAATCTGTAATAGTTGCAAAGAAATCATCAAAATACACTCCAACTTTTCCACCATCTGAAAGGCAGCAGAATCAGTCTATCAAGGCACTTAAGGAACACGTTGTCGATAGCGCAGTGCATGCTGATTCGGAACAATGGTTTCAGGGATACAATTCTAATGACTTTGAGGTTGAAAGTTCTGACATGGATTATTCATTGGACGCGCTTCTTTTGCTGCAGAAGTCGATGTTGGAAAAGCAATGGAGTCTTTCATTTGAAAGGAAAGTGTTGAGTGAGAATTCGAGGAGAGAAAAAATCCGGAGGAAGGTATCTGTGACTTGTTCTGGAGTGTCTGCAAGGCAAAGAAGAATGACAACCAAGAGGAAGATCGCTGCTAAAAGTGGTTCTGCAGTGATGCAGCTGAGGTCTACAATCAATCCCGAACTTATTCAAAACCGTTTGAAGGGATATGTGAAAGGTGTCGTGAGTGACGAATTGCTCTCTCATGCTGAAGTTGTAAAGCTATCGGAGAAAATTAAAGCTGGCCTTTCTTTAGATGAGCATAAATCTAGACTGAAGGAAAGATTAGGAAGTGAACCTTCCGATGATCAAGTTGCAACTTCGTTGAAGATTTCTCGAGCAGAACTACGAGCTAAAATAATAGAGTGCTCTTTAGCAAGAGAAAAGTTAACTATGAGCAATGTTCGCTTAGTTTTGTCCATTGCTCAAAGATATGATAATATGGGTGCTGAAATGGGTGACCTTGTTCAGGGTGGCTTGATTGGACTACTTCGTGGGATTGAGAAGTTTGATTCTTCAAAAGGGTTCAAGATTTCAACTTATGTTTATTGGTGGATACGACAGGGTGTTTCAAGAGCTCTAGTTGAGAATTCAAGAACATTAAGATTGCCCGCTCATTTGCATGAGAGGTTATCTCTGATCCGCAATGCAGAGTATAGACTCGAAGAGAGAGGCATCACTCCAACTATTGATAGAATTGCAAAAAGCCTTAATATGTCTCAAAGGAAAGTCAGAAATGCTACTGAGGCTATAAGCAAAGTTTTCTCCTTAGATAGGGAAGCATTCCCCTCTCTGAATGGTCTTCCAGGAGACACTCATCACAGCTTTATTGCAGATAAACAAAATGAGAACATCCCATGGAATGGAGTAGACGAGTGGGCTCTAAAGGAAGAAGTGAACAGACTCATTAATGTGACCCTCGTGGAACGCGAGAGAGAAATTGTTCGTCTTTATTATGGATTGGATAAAGAATGTCTTACATGGGAAGACATTAGTAAACGGATAGGTTTGTCGAGAGAAAGAGTAAGGCAAGTTGGACTTGTTGCATTGGAGAAACTAAAACATGCCGCAAGGAAGAGGGAGATGGAAGCCATGCTTTTGAAACATTGA

Protein sequence

>Msa0598250

MATAAVIGLSGGKRLLSSSYHYSDIIEKFSHASCDFGSTQYQLPPSKSVIVAKKSSKYTPTFPPSERQQNQSIKALKEHVVDSAVHADSEQWFQGYNSNDFEVESSDMDYSLDALLLLQKSMLEKQWSLSFERKVLSENSRREKIRRKVSVTCSGVSARQRRMTTKRKIAAKSGSAVMQLRSTINPELIQNRLKGYVKGVVSDELLSHAEVVKLSEKIKAGLSLDEHKSRLKERLGSEPSDDQVATSLKISRAELRAKIIECSLAREKLTMSNVRLVLSIAQRYDNMGAEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSLIRNAEYRLEERGITPTIDRIAKSLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGDTHHSFIADKQNENIPWNGVDEWALKEEVNRLINVTLVEREREIVRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEAMLLKH*