AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0062750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0062750 MtrunA17_Chr1g0163521 89.552 268 2 2 1 242 1 268 1.57e-169 472
Msa0062750 MtrunA17_Chr5g0436571 44.082 245 83 6 21 242 19 232 3.09e-58 187
Msa0062750 MtrunA17_Chr8g0372531 35.338 133 66 5 25 157 29 141 2.12e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0062750 AT2G39970.1 48.361 244 74 6 21 241 19 233 1.32e-65 207
Msa0062750 AT5G66380.1 31.847 157 88 3 1 157 1 138 2.21e-12 65.9

Find 57 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATTGTGGCTGCTATTGC+AGG 0.200548 1_2:+22486469 Msa0062750:CDS
ATGACCCTTTATTAGGTTAT+TGG 0.201418 1_2:+22484689 Msa0062750:intron
GGTCTTAAGCCTTCTCTTCT+TGG 0.216302 1_2:+22484740 Msa0062750:CDS
AGGAAAAGAAAGAAGCTTTA+AGG 0.260649 1_2:+22487037 Msa0062750:CDS
ACTACTGCTTCTTCTTCTTC+TGG 0.290540 1_2:+22484577 Msa0062750:CDS
CGAGTCACGAGAACCCAAAT+TGG 0.304007 1_2:-22486612 None:intergenic
AGAGTTCATTAAAGCATCTA+AGG 0.312907 1_2:+22487759 Msa0062750:CDS
AACTCTCGTAAATCATAAAC+TGG 0.323668 1_2:-22487742 None:intergenic
CACGAGTGTAACTGCTTTAG+AGG 0.333460 1_2:+22487811 Msa0062750:CDS
TCTTGGAACTGCTGCTTCTC+AGG 0.346908 1_2:+22484757 Msa0062750:CDS
TAAGTGTTCTCTCAGTTTGT+TGG 0.348838 1_2:-22484519 None:intergenic
TCTACAAAGCCTAAACCATT+TGG 0.353256 1_2:+22487123 Msa0062750:CDS
TGTATAGTCCCAAATGGTTT+AGG 0.366586 1_2:-22487132 None:intergenic
GGTTATTGGAAATGAAGGTT+GGG 0.381820 1_2:+22484703 Msa0062750:intron
ACAAGTGGAAATCATGTGTT+AGG 0.404958 1_2:+22487852 Msa0062750:three_prime_UTR
GCGTCTGAGAGTAGCTTAAC+AGG 0.405111 1_2:+22487066 Msa0062750:CDS
CTACAAAGCCTAAACCATTT+GGG 0.407495 1_2:+22487124 Msa0062750:CDS
TTATGTGTTTGTTTGGTTCA+CGG 0.431969 1_2:-22484128 None:intergenic
GACGGTACTGTTGGAATGTT+CGG 0.436028 1_2:+22486442 Msa0062750:CDS
AGGTTATTGGAAATGAAGGT+TGG 0.438668 1_2:+22484702 Msa0062750:intron
AGAAGCAGTAGTTATTGTGT+TGG 0.439931 1_2:-22484566 None:intergenic
TTTGTTCACAAACCCAATTT+GGG 0.452158 1_2:+22486599 Msa0062750:CDS
TATTAGGTTATTGGAAATGA+AGG 0.455803 1_2:+22484698 Msa0062750:intron
GCCATAGCCAATGGTTTAGC+TGG 0.464563 1_2:+22484348 Msa0062750:CDS
GAGTCACGAGAACCCAAATT+GGG 0.469815 1_2:-22486611 None:intergenic
AAACTGAGAGAACACTTAAG+AGG 0.470485 1_2:+22484524 Msa0062750:CDS
GGTTCTCGTGACTCGAATGC+AGG 0.489190 1_2:+22486620 Msa0062750:CDS
TAGCTTAACAGGTTCAACTT+TGG 0.494662 1_2:+22487077 Msa0062750:CDS
GGTTGGGGTGGACTCTATAG+TGG 0.503801 1_2:+22484719 Msa0062750:CDS
GCCAATGGTTTAGCTGGAGC+TGG 0.509902 1_2:+22484354 Msa0062750:CDS
TAGTTGAATTGAAGTAAAAG+TGG 0.510530 1_2:-22484200 None:intergenic
AGTTGAATTGAAGTAAAAGT+GGG 0.530977 1_2:-22484199 None:intergenic
ACAGCATGTATAGTCCCAAA+TGG 0.535090 1_2:-22487138 None:intergenic
GGTTTAGCTGGAGCTGGTGG+TGG 0.545599 1_2:+22484360 Msa0062750:CDS
TCCAGCTAAACCATTGGCTA+TGG 0.546790 1_2:-22484349 None:intergenic
AACGCTCTGCTAAGAAGCAA+GGG 0.553222 1_2:+22487786 Msa0062750:CDS
TAAATCATAAACTGGATCGA+TGG 0.556216 1_2:-22487734 None:intergenic
GTACTGTTGGAATGTTCGGT+TGG 0.557910 1_2:+22486446 Msa0062750:CDS
AGAATACTTTAAAATACAAG+TGG 0.561728 1_2:+22487837 Msa0062750:exon
GCAGCAGTTCCAAGAAGAGA+AGG 0.561769 1_2:-22484749 None:intergenic
GTTATTGGAAATGAAGGTTG+GGG 0.562835 1_2:+22484704 Msa0062750:CDS
GGACATGGAGACGGTACTGT+TGG 0.566770 1_2:+22486433 Msa0062750:CDS
AAACGCTCTGCTAAGAAGCA+AGG 0.580328 1_2:+22487785 Msa0062750:CDS
ACCAGCTCCAGCTAAACCAT+TGG 0.585042 1_2:-22484355 None:intergenic
AAAGAAAGAAGCTTTAAGGA+AGG 0.587121 1_2:+22487041 Msa0062750:CDS
GCAAGGAAAGTCAAAGGACA+TGG 0.593446 1_2:+22486418 Msa0062750:CDS
CTGTGGCTATTGCAGCTGCA+AGG 0.598880 1_2:+22486401 Msa0062750:CDS
TGATGAAGTGAAACTGTGTA+TGG 0.605561 1_2:-22484311 None:intergenic
GAGTCAAACGCCATAGCCAA+TGG 0.611491 1_2:+22484339 Msa0062750:CDS
ATTGGAAATGAAGGTTGGGG+TGG 0.611702 1_2:+22484707 Msa0062750:CDS
TCATTGTGGCTGCTATTGCA+GGG 0.616121 1_2:+22486470 Msa0062750:CDS
GAGTTCATTAAAGCATCTAA+GGG 0.622809 1_2:+22487760 Msa0062750:CDS
GCAGCTGCAAGGAAAGTCAA+AGG 0.631757 1_2:+22486412 Msa0062750:CDS
AATGGTTTAGCTGGAGCTGG+TGG 0.648458 1_2:+22484357 Msa0062750:CDS
ACGCTCTGCTAAGAAGCAAG+GGG 0.664715 1_2:+22487787 Msa0062750:CDS
AAAGTCAAAGGACATGGAGA+CGG 0.675024 1_2:+22486424 Msa0062750:CDS
AATGTTCGGTTGGCTCATTG+TGG 0.696277 1_2:+22486456 Msa0062750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAAAAGATAAATACA+AGG - chr1_2:22485640-22485659 None:intergenic 10.0%
!! AATAAAAATATATATTACAC+TGG + chr1_2:22487261-22487280 Msa0062750:intron 10.0%
!! CATATCATCTTAATATTTAT+GGG - chr1_2:22484980-22484999 None:intergenic 15.0%
!! TCATATCATCTTAATATTTA+TGG - chr1_2:22484981-22485000 None:intergenic 15.0%
!!! TACTAAACGATTTTAAATTA+TGG - chr1_2:22486159-22486178 None:intergenic 15.0%
!!! TTGATAATTAAACATTTAAG+TGG - chr1_2:22486332-22486351 None:intergenic 15.0%
!!! TTTAATTATCAATGTTTTCA+GGG + chr1_2:22486340-22486359 Msa0062750:intron 15.0%
!!! ATCATTTTTATGTGTTTGTT+TGG - chr1_2:22484138-22484157 None:intergenic 20.0%
!!! CACATAAAAATGATTTTACA+AGG + chr1_2:22484144-22484163 Msa0062750:five_prime_UTR 20.0%
!! TTGAAGATAACTAAGAAAAA+AGG - chr1_2:22484440-22484459 None:intergenic 20.0%
!!! TTGTTTCATTTCTTTTTGAT+TGG + chr1_2:22484635-22484654 Msa0062750:intron 20.0%
!! ATTTCCAATAACCTAATAAA+GGG - chr1_2:22484696-22484715 None:intergenic 20.0%
!! TTAGATAAAAACACTTGAAA+TGG - chr1_2:22484787-22484806 None:intergenic 20.0%
!!! TCTTATAAGTTTGTTTTGTA+AGG + chr1_2:22485876-22485895 Msa0062750:intron 20.0%
!!! ATTATTTCTTCGATTTTTTG+AGG - chr1_2:22485916-22485935 None:intergenic 20.0%
!! CAAATAGATAAAGATATTAC+AGG - chr1_2:22485990-22486009 None:intergenic 20.0%
!!! TTTTAAATTATGGCAAAATG+CGG - chr1_2:22486149-22486168 None:intergenic 20.0%
!!! GTTTAATTATCAATGTTTTC+AGG + chr1_2:22486339-22486358 Msa0062750:intron 20.0%
!! TTCATATAATCTTATTATGC+AGG + chr1_2:22486565-22486584 Msa0062750:intron 20.0%
!!! TATGCTTGACATTTTATATT+TGG + chr1_2:22486976-22486995 Msa0062750:intron 20.0%
!!! GAAATTTTGATTTGATGAAA+AGG + chr1_2:22487377-22487396 Msa0062750:intron 20.0%
!!! AGAATACTTTAAAATACAAG+TGG + chr1_2:22487837-22487856 Msa0062750:exon 20.0%
! AGTTGAATTGAAGTAAAAGT+GGG - chr1_2:22484202-22484221 None:intergenic 25.0%
! TAGTTGAATTGAAGTAAAAG+TGG - chr1_2:22484203-22484222 None:intergenic 25.0%
! AGTTGAATTGAAGTAAAAGT+GGG - chr1_2:22484202-22484221 None:intergenic 25.0%
! TAGTTGAATTGAAGTAAAAG+TGG - chr1_2:22484203-22484222 None:intergenic 25.0%
!! AGAAAAAAGGAAGAGAATTT+TGG - chr1_2:22484427-22484446 None:intergenic 25.0%
!! CATTTTTCTTCAGATTTTTC+AGG + chr1_2:22484600-22484619 Msa0062750:CDS 25.0%
!!! TTTTGTTATGACCCTTTATT+AGG + chr1_2:22484682-22484701 Msa0062750:intron 25.0%
! CATTTCCAATAACCTAATAA+AGG - chr1_2:22484697-22484716 None:intergenic 25.0%
! TATTAGGTTATTGGAAATGA+AGG + chr1_2:22484698-22484717 Msa0062750:intron 25.0%
! ACGAAGATATGTTTATAAGT+GGG + chr1_2:22484906-22484925 Msa0062750:intron 25.0%
! CATCTTAATATTTATGGGTT+GGG - chr1_2:22484975-22484994 None:intergenic 25.0%
! TCATCTTAATATTTATGGGT+TGG - chr1_2:22484976-22484995 None:intergenic 25.0%
! TTAAGATGATATGATATGAG+TGG + chr1_2:22484987-22485006 Msa0062750:intron 25.0%
!! TCATTTATAAACACTTGTTG+AGG - chr1_2:22485136-22485155 None:intergenic 25.0%
! TCAACAAGTGTTTATAAATG+AGG + chr1_2:22485135-22485154 Msa0062750:intron 25.0%
! CAACAAGTGTTTATAAATGA+GGG + chr1_2:22485136-22485155 Msa0062750:intron 25.0%
! TGATACAATCTTAAAGTTTG+TGG - chr1_2:22485210-22485229 None:intergenic 25.0%
! AAGCCTATCAAAGATTAATT+TGG + chr1_2:22485230-22485249 Msa0062750:intron 25.0%
! ATGCCAAATTAATCTTTGAT+AGG - chr1_2:22485236-22485255 None:intergenic 25.0%
!! TATCAAAGATTAATTTGGCA+TGG + chr1_2:22485235-22485254 Msa0062750:intron 25.0%
!!! TTTTTTAGGCATGTACTTTA+TGG - chr1_2:22485333-22485352 None:intergenic 25.0%
!!! CTGGGCTATAATTTTTTTTT+AGG - chr1_2:22485347-22485366 None:intergenic 25.0%
!! TGTTTTATGCCTATTAGAAT+TGG + chr1_2:22485505-22485524 Msa0062750:intron 25.0%
!! GTTTTATGCCTATTAGAATT+GGG + chr1_2:22485506-22485525 Msa0062750:intron 25.0%
! TTTAAATTATGGCAAAATGC+GGG - chr1_2:22486148-22486167 None:intergenic 25.0%
!!! CTCGTATTATTTTTCGTTTA+AGG - chr1_2:22486236-22486255 None:intergenic 25.0%
!!! CTATCAAGTTTTTAAGAACA+AGG + chr1_2:22486378-22486397 Msa0062750:CDS 25.0%
! ATGAATGAACACATAGAATT+CGG - chr1_2:22486550-22486569 None:intergenic 25.0%
! TTCTCATATTTGTCATCTTT+CGG + chr1_2:22486650-22486669 Msa0062750:intron 25.0%
! CTCTTATTCACTTATATAGA+GGG - chr1_2:22486846-22486865 None:intergenic 25.0%
! ACTCTTATTCACTTATATAG+AGG - chr1_2:22486847-22486866 None:intergenic 25.0%
!! TTTTAAGCATTCGAAGTTTA+TGG - chr1_2:22486885-22486904 None:intergenic 25.0%
!! TATATAGTTTGTGGTAACAT+CGG - chr1_2:22486932-22486951 None:intergenic 25.0%
! AATTTCAACATGAAAGATCA+TGG - chr1_2:22487224-22487243 None:intergenic 25.0%
! GAACATATCAATAAGAAGAT+TGG - chr1_2:22487481-22487500 None:intergenic 25.0%
! ATACCTATCATGAAAATTCT+CGG - chr1_2:22487709-22487728 None:intergenic 25.0%
! TTATGTGTTTGTTTGGTTCA+CGG - chr1_2:22484131-22484150 None:intergenic 30.0%
CTGAGATATGAATATTGCAA+TGG - chr1_2:22484488-22484507 None:intergenic 30.0%
CATTGCAATATTCATATCTC+AGG + chr1_2:22484486-22484505 Msa0062750:intron 30.0%
ATGACCCTTTATTAGGTTAT+TGG + chr1_2:22484689-22484708 Msa0062750:intron 30.0%
TAAAGCCTAAAGCAACTATT+GGG - chr1_2:22484816-22484835 None:intergenic 30.0%
ATAAAGCCTAAAGCAACTAT+TGG - chr1_2:22484817-22484836 None:intergenic 30.0%
TATTACTAGTATGAGACAGA+GGG - chr1_2:22484849-22484868 None:intergenic 30.0%
TTATTACTAGTATGAGACAG+AGG - chr1_2:22484850-22484869 None:intergenic 30.0%
CACGAAGATATGTTTATAAG+TGG + chr1_2:22484905-22484924 Msa0062750:intron 30.0%
CGAAGATATGTTTATAAGTG+GGG + chr1_2:22484907-22484926 Msa0062750:intron 30.0%
CCTTACAAAATCTACTTCTA+AGG - chr1_2:22484942-22484961 None:intergenic 30.0%
! CCTTAGAAGTAGATTTTGTA+AGG + chr1_2:22484939-22484958 Msa0062750:intron 30.0%
!!! GTTCCACATTTTTAGTGATA+TGG + chr1_2:22485110-22485129 Msa0062750:intron 30.0%
CAATCTTAAAGTTTGTGGTT+GGG - chr1_2:22485205-22485224 None:intergenic 30.0%
ACAATCTTAAAGTTTGTGGT+TGG - chr1_2:22485206-22485225 None:intergenic 30.0%
TAGTACTTAGTAGTACTACT+GGG - chr1_2:22485365-22485384 None:intergenic 30.0%
TTAGTACTTAGTAGTACTAC+TGG - chr1_2:22485366-22485385 None:intergenic 30.0%
ATAAAACAAGACAACAGAAG+AGG - chr1_2:22485493-22485512 None:intergenic 30.0%
! ATGCTCTAGATGTTTAGTTA+TGG + chr1_2:22485777-22485796 Msa0062750:intron 30.0%
! TGCTCTAGATGTTTAGTTAT+GGG + chr1_2:22485778-22485797 Msa0062750:intron 30.0%
CAAAACAAACTTATAAGACG+AGG - chr1_2:22485874-22485893 None:intergenic 30.0%
!!! TTTCTTCGATTTTTTGAGGT+GGG - chr1_2:22485912-22485931 None:intergenic 30.0%
!!! ATTTCTTCGATTTTTTGAGG+TGG - chr1_2:22485913-22485932 None:intergenic 30.0%
ACTATGGTAGTAATATACGA+TGG - chr1_2:22486021-22486040 None:intergenic 30.0%
CGGACAGTAAATTAAAACTA+TGG - chr1_2:22486037-22486056 None:intergenic 30.0%
!! GTATGATGTGCTTTTTGTTT+TGG + chr1_2:22486295-22486314 Msa0062750:intron 30.0%
!!! TGCTTTTTGTTTTGGATTTC+AGG + chr1_2:22486303-22486322 Msa0062750:intron 30.0%
TATAGAGTGTAACACTTCAA+AGG - chr1_2:22486514-22486533 None:intergenic 30.0%
TGAATGAACACATAGAATTC+GGG - chr1_2:22486549-22486568 None:intergenic 30.0%
! TTTTGTTCACAAACCCAATT+TGG + chr1_2:22486598-22486617 Msa0062750:CDS 30.0%
TTTGTTCACAAACCCAATTT+GGG + chr1_2:22486599-22486618 Msa0062750:CDS 30.0%
TTCTTATGTAGTCTACTTAC+TGG - chr1_2:22486710-22486729 None:intergenic 30.0%
AAGCATGGATATATAGTTTG+TGG - chr1_2:22486941-22486960 None:intergenic 30.0%
TCAAGCAGAAAGAAAAATCT+TGG + chr1_2:22487014-22487033 Msa0062750:CDS 30.0%
AGGAAAAGAAAGAAGCTTTA+AGG + chr1_2:22487037-22487056 Msa0062750:CDS 30.0%
!! AAAGAAAGAAGCTTTAAGGA+AGG + chr1_2:22487041-22487060 Msa0062750:CDS 30.0%
ATCATGGATGTTATTGAAAG+AGG - chr1_2:22487208-22487227 None:intergenic 30.0%
AAATGTGAATCGACAATCTT+TGG - chr1_2:22487317-22487336 None:intergenic 30.0%
!! GATTTCCTTCACTTTTATCA+AGG + chr1_2:22487347-22487366 Msa0062750:intron 30.0%
!! ATTAGCCTTGATAAAAGTGA+AGG - chr1_2:22487355-22487374 None:intergenic 30.0%
AATGAAGTATATAACGAAGC+CGG + chr1_2:22487402-22487421 Msa0062750:intron 30.0%
TTTCCAAAATCCAACTATAC+CGG - chr1_2:22487424-22487443 None:intergenic 30.0%
AACTAACCATAATTAGAGCA+GGG - chr1_2:22487455-22487474 None:intergenic 30.0%
AAACTAACCATAATTAGAGC+AGG - chr1_2:22487456-22487475 None:intergenic 30.0%
TAGTACAAAATCTTGCCAAA+TGG - chr1_2:22487564-22487583 None:intergenic 30.0%
! AAACCGAGAATTTTCATGAT+AGG + chr1_2:22487703-22487722 Msa0062750:intron 30.0%
TAAATCATAAACTGGATCGA+TGG - chr1_2:22487737-22487756 None:intergenic 30.0%
AACTCTCGTAAATCATAAAC+TGG - chr1_2:22487745-22487764 None:intergenic 30.0%
! AGAGTTCATTAAAGCATCTA+AGG + chr1_2:22487759-22487778 Msa0062750:CDS 30.0%
! GAGTTCATTAAAGCATCTAA+GGG + chr1_2:22487760-22487779 Msa0062750:CDS 30.0%
TGATGAAGTGAAACTGTGTA+TGG - chr1_2:22484314-22484333 None:intergenic 35.0%
!!! ATTTTGGTTACAGCTTGAAG+TGG - chr1_2:22484411-22484430 None:intergenic 35.0%
TAAGTGTTCTCTCAGTTTGT+TGG - chr1_2:22484522-22484541 None:intergenic 35.0%
AAACTGAGAGAACACTTAAG+AGG + chr1_2:22484524-22484543 Msa0062750:CDS 35.0%
AGAAGCAGTAGTTATTGTGT+TGG - chr1_2:22484569-22484588 None:intergenic 35.0%
AGGTTATTGGAAATGAAGGT+TGG + chr1_2:22484702-22484721 Msa0062750:intron 35.0%
GGTTATTGGAAATGAAGGTT+GGG + chr1_2:22484703-22484722 Msa0062750:intron 35.0%
GTTATTGGAAATGAAGGTTG+GGG + chr1_2:22484704-22484723 Msa0062750:CDS 35.0%
!! CAAAATCTACTTCTAAGGTG+AGG - chr1_2:22484937-22484956 None:intergenic 35.0%
TCCTAATAAGTTTCCGCTAT+CGG + chr1_2:22485034-22485053 Msa0062750:intron 35.0%
AGGCCATATCACTAAAAATG+TGG - chr1_2:22485116-22485135 None:intergenic 35.0%
TAACACAACCACACAAAAAG+CGG - chr1_2:22485180-22485199 None:intergenic 35.0%
TTTAGGCATGTACTTTATGG+AGG - chr1_2:22485330-22485349 None:intergenic 35.0%
GTGGTATCAGAAAGACAATA+AGG - chr1_2:22485407-22485426 None:intergenic 35.0%
AGAAGAAAAGGAAAGTCTGA+TGG - chr1_2:22485449-22485468 None:intergenic 35.0%
AGAGGAAAAGGAAATCAAAC+CGG - chr1_2:22485475-22485494 None:intergenic 35.0%
!!! TGTTAGGTGGGTGTTTTTTT+GGG + chr1_2:22485544-22485563 Msa0062750:intron 35.0%
AAATCACTACCATATGCATG+AGG - chr1_2:22485586-22485605 None:intergenic 35.0%
!! ATGGTAGTGATTTTCACCTT+TGG + chr1_2:22485593-22485612 Msa0062750:intron 35.0%
!! TGGTAGTGATTTTCACCTTT+GGG + chr1_2:22485594-22485613 Msa0062750:intron 35.0%
ATGTTTAGTTATGGGTGTGA+GGG + chr1_2:22485786-22485805 Msa0062750:intron 35.0%
TTACAGTTGTAATGTCGTTG+TGG - chr1_2:22486101-22486120 None:intergenic 35.0%
!! AGTTTTTAAGAACAAGGCTG+TGG + chr1_2:22486384-22486403 Msa0062750:CDS 35.0%
!!! GCTGCAGTTGTTTTTCTATT+AGG + chr1_2:22486787-22486806 Msa0062750:intron 35.0%
ATGTCAAGCATAACCAACAA+TGG - chr1_2:22486968-22486987 None:intergenic 35.0%
AGCAGAAAGAAAAATCTTGG+AGG + chr1_2:22487017-22487036 Msa0062750:CDS 35.0%
TAGCTTAACAGGTTCAACTT+TGG + chr1_2:22487077-22487096 Msa0062750:CDS 35.0%
TCTACAAAGCCTAAACCATT+TGG + chr1_2:22487123-22487142 Msa0062750:CDS 35.0%
CTACAAAGCCTAAACCATTT+GGG + chr1_2:22487124-22487143 Msa0062750:CDS 35.0%
TGTATAGTCCCAAATGGTTT+AGG - chr1_2:22487135-22487154 None:intergenic 35.0%
!! GGTATAGTTGGATTTTGGAA+AGG + chr1_2:22487423-22487442 Msa0062750:intron 35.0%
TACAAAATCTTGCCAAATGG+AGG - chr1_2:22487561-22487580 None:intergenic 35.0%
ACAAGTGGAAATCATGTGTT+AGG + chr1_2:22487852-22487871 Msa0062750:three_prime_UTR 35.0%
ACTACTGCTTCTTCTTCTTC+TGG + chr1_2:22484577-22484596 Msa0062750:CDS 40.0%
GTGTCATCTCTCATCTAATG+CGG - chr1_2:22484888-22484907 None:intergenic 40.0%
AGTGGATATCCAAGAACTGT+TGG + chr1_2:22485005-22485024 Msa0062750:intron 40.0%
!! GATAGCGGAAACTTATTAGG+AGG - chr1_2:22485035-22485054 None:intergenic 40.0%
CCTAATAAGTTTCCGCTATC+GGG + chr1_2:22485035-22485054 Msa0062750:intron 40.0%
TTAACATACCCTTCAAGCAC+AGG - chr1_2:22485088-22485107 None:intergenic 40.0%
! ACTTTCCTTTTCTTCTTCCC+CGG + chr1_2:22485453-22485472 Msa0062750:intron 40.0%
AGGAAAAGGAAATCAAACCG+GGG - chr1_2:22485473-22485492 None:intergenic 40.0%
GAGGAAAAGGAAATCAAACC+GGG - chr1_2:22485474-22485493 None:intergenic 40.0%
CAAGACAACAGAAGAGGAAA+AGG - chr1_2:22485487-22485506 None:intergenic 40.0%
CAAGAGGACCCAATTCTAAT+AGG - chr1_2:22485517-22485536 None:intergenic 40.0%
!!! TCTTGCTTTTGGTGTTAGGT+GGG + chr1_2:22485532-22485551 Msa0062750:intron 40.0%
!!! GTGTTAGGTGGGTGTTTTTT+TGG + chr1_2:22485543-22485562 Msa0062750:intron 40.0%
! TTTGAGGTTCCTCATGCATA+TGG + chr1_2:22485574-22485593 Msa0062750:intron 40.0%
TATATGTGCAATACGCCCAA+AGG - chr1_2:22485612-22485631 None:intergenic 40.0%
TTTGGGCGTATTGCACATAT+AGG + chr1_2:22485611-22485630 Msa0062750:intron 40.0%
TTGGGCGTATTGCACATATA+GGG + chr1_2:22485612-22485631 Msa0062750:intron 40.0%
GATGTTTAGTTATGGGTGTG+AGG + chr1_2:22485785-22485804 Msa0062750:intron 40.0%
TGTTTAGTTATGGGTGTGAG+GGG + chr1_2:22485787-22485806 Msa0062750:intron 40.0%
CATCGTTTATCCAATGTGGT+GGG - chr1_2:22485827-22485846 None:intergenic 40.0%
! GAGTATTCGTTTCTAAGAGC+CGG + chr1_2:22486264-22486283 Msa0062750:intron 40.0%
! GCACATCATACTGTGTTTTC+CGG - chr1_2:22486286-22486305 None:intergenic 40.0%
AAAGTCAAAGGACATGGAGA+CGG + chr1_2:22486424-22486443 Msa0062750:CDS 40.0%
TTATGTACCCGACAATACAG+TGG + chr1_2:22486765-22486784 Msa0062750:intron 40.0%
ACATCGGCAAAAGCAGATTA+TGG - chr1_2:22486916-22486935 None:intergenic 40.0%
TCCATGCTTAAGTCCATTGT+TGG + chr1_2:22486952-22486971 Msa0062750:intron 40.0%
! ACCAACAATGGACTTAAGCA+TGG - chr1_2:22486956-22486975 None:intergenic 40.0%
ACAGCATGTATAGTCCCAAA+TGG - chr1_2:22487141-22487160 None:intergenic 40.0%
TATAACGAAGCCGGTATAGT+TGG + chr1_2:22487411-22487430 Msa0062750:intron 40.0%
! AAGCCGGTATAGTTGGATTT+TGG + chr1_2:22487418-22487437 Msa0062750:intron 40.0%
TGTCATCCCTGCTCTAATTA+TGG + chr1_2:22487446-22487465 Msa0062750:intron 40.0%
!! TAGCGTAGCAGAGTTTGTTA+TGG - chr1_2:22487517-22487536 None:intergenic 40.0%
! TCCAGCTAAACCATTGGCTA+TGG - chr1_2:22484352-22484371 None:intergenic 45.0%
ATTGGAAATGAAGGTTGGGG+TGG + chr1_2:22484707-22484726 Msa0062750:CDS 45.0%
GGTCTTAAGCCTTCTCTTCT+TGG + chr1_2:22484740-22484759 Msa0062750:CDS 45.0%
! CTGCACCCAATAGTTGCTTT+AGG + chr1_2:22484808-22484827 Msa0062750:intron 45.0%
!! CCCGATAGCGGAAACTTATT+AGG - chr1_2:22485038-22485057 None:intergenic 45.0%
ATGTCCATTCCTGTGCTTGA+AGG + chr1_2:22485076-22485095 Msa0062750:intron 45.0%
TGTCCATTCCTGTGCTTGAA+GGG + chr1_2:22485077-22485096 Msa0062750:intron 45.0%
ATACCCTTCAAGCACAGGAA+TGG - chr1_2:22485083-22485102 None:intergenic 45.0%
AAAAAGCGGCTTATGAGGTG+AGG - chr1_2:22485166-22485185 None:intergenic 45.0%
CACACAAAAAGCGGCTTATG+AGG - chr1_2:22485171-22485190 None:intergenic 45.0%
!!! CTCATAAGCCGCTTTTTGTG+TGG + chr1_2:22485169-22485188 Msa0062750:intron 45.0%
GCATGGTATCAGAGCTTATC+AGG + chr1_2:22485252-22485271 Msa0062750:intron 45.0%
GCTTATCAGGTTTCTGCTCA+AGG + chr1_2:22485265-22485284 Msa0062750:intron 45.0%
TGCAAAGAGCTCAATGGAAC+TGG + chr1_2:22485303-22485322 Msa0062750:intron 45.0%
GCAAAGAGCTCAATGGAACT+GGG + chr1_2:22485304-22485323 Msa0062750:intron 45.0%
! AGTGATAGTGATGGAACGTG+TGG - chr1_2:22485426-22485445 None:intergenic 45.0%
! GTCTGATGGAGTGATAGTGA+TGG - chr1_2:22485435-22485454 None:intergenic 45.0%
TCAAACCGGGGAAGAAGAAA+AGG - chr1_2:22485461-22485480 None:intergenic 45.0%
! GAATTGGGTCCTCTTGCTTT+TGG + chr1_2:22485521-22485540 Msa0062750:intron 45.0%
!!! GTCCTCTTGCTTTTGGTGTT+AGG + chr1_2:22485528-22485547 Msa0062750:intron 45.0%
CACCTAACACCAAAAGCAAG+AGG - chr1_2:22485533-22485552 None:intergenic 45.0%
!!! CTCTTGCTTTTGGTGTTAGG+TGG + chr1_2:22485531-22485550 Msa0062750:intron 45.0%
!!! TAGGTGGGTGTTTTTTTGGG+AGG + chr1_2:22485547-22485566 Msa0062750:intron 45.0%
!!! AGGTGGGTGTTTTTTTGGGA+GGG + chr1_2:22485548-22485567 Msa0062750:intron 45.0%
!!! TTTTTTGGGAGGGTGGTTTG+AGG + chr1_2:22485558-22485577 Msa0062750:intron 45.0%
GCATGACAGATAGCAGAACA+GGG - chr1_2:22485761-22485780 None:intergenic 45.0%
AGCATGACAGATAGCAGAAC+AGG - chr1_2:22485762-22485781 None:intergenic 45.0%
TGTTAAGAGTCCCACCACAT+TGG + chr1_2:22485814-22485833 Msa0062750:intron 45.0%
CCATCGTTTATCCAATGTGG+TGG - chr1_2:22485828-22485847 None:intergenic 45.0%
CCACCACATTGGATAAACGA+TGG + chr1_2:22485825-22485844 Msa0062750:intron 45.0%
GAGCCATCGTTTATCCAATG+TGG - chr1_2:22485831-22485850 None:intergenic 45.0%
ACTGTCCGCAACCATAATTG+CGG + chr1_2:22486049-22486068 Msa0062750:intron 45.0%
TTGCATCGTGACCGCAATTA+TGG - chr1_2:22486063-22486082 None:intergenic 45.0%
TAATTGCGGTCACGATGCAA+AGG + chr1_2:22486063-22486082 Msa0062750:intron 45.0%
! GGTCACGATGCAAAGGTTTT+TGG + chr1_2:22486070-22486089 Msa0062750:intron 45.0%
GCGGGAAAATGTTGTCAATG+TGG - chr1_2:22486130-22486149 None:intergenic 45.0%
ACAGCAGCCAATGTGAATCA+GGG - chr1_2:22486186-22486205 None:intergenic 45.0%
AACAGCAGCCAATGTGAATC+AGG - chr1_2:22486187-22486206 None:intergenic 45.0%
GCAAGGAAAGTCAAAGGACA+TGG + chr1_2:22486418-22486437 Msa0062750:CDS 45.0%
GACGGTACTGTTGGAATGTT+CGG + chr1_2:22486442-22486461 Msa0062750:CDS 45.0%
GTACTGTTGGAATGTTCGGT+TGG + chr1_2:22486446-22486465 Msa0062750:CDS 45.0%
! AATGTTCGGTTGGCTCATTG+TGG + chr1_2:22486456-22486475 Msa0062750:CDS 45.0%
TCATTGTGGCTGCTATTGCA+GGG + chr1_2:22486470-22486489 Msa0062750:CDS 45.0%
GAGTCACGAGAACCCAAATT+GGG - chr1_2:22486614-22486633 None:intergenic 45.0%
GTCGGGTACATAAGAACGAT+TGG - chr1_2:22486758-22486777 None:intergenic 45.0%
AACTGCAGCCACTGTATTGT+CGG - chr1_2:22486776-22486795 None:intergenic 45.0%
! CTTGCCAAATGGAGGCATAA+CGG - chr1_2:22487553-22487572 None:intergenic 45.0%
AAACGCTCTGCTAAGAAGCA+AGG + chr1_2:22487785-22487804 Msa0062750:CDS 45.0%
AACGCTCTGCTAAGAAGCAA+GGG + chr1_2:22487786-22487805 Msa0062750:CDS 45.0%
CACGAGTGTAACTGCTTTAG+AGG + chr1_2:22487811-22487830 Msa0062750:CDS 45.0%
!!! AATATATATTTTTATTACAA+TGG - chr1_2:22487257-22487276 None:intergenic 5.0%
GAGTCAAACGCCATAGCCAA+TGG + chr1_2:22484339-22484358 Msa0062750:CDS 50.0%
GCCATAGCCAATGGTTTAGC+TGG + chr1_2:22484348-22484367 Msa0062750:CDS 50.0%
ACCAGCTCCAGCTAAACCAT+TGG - chr1_2:22484358-22484377 None:intergenic 50.0%
AATGGTTTAGCTGGAGCTGG+TGG + chr1_2:22484357-22484376 Msa0062750:CDS 50.0%
GCAGCAGTTCCAAGAAGAGA+AGG - chr1_2:22484752-22484771 None:intergenic 50.0%
! TCTTGGAACTGCTGCTTCTC+AGG + chr1_2:22484757-22484776 Msa0062750:CDS 50.0%
GGAGGTGATCCAACAGTTCT+TGG - chr1_2:22485017-22485036 None:intergenic 50.0%
ATCAGGTTTCTGCTCAAGGC+CGG + chr1_2:22485269-22485288 Msa0062750:intron 50.0%
!!! TGGGTGTTTTTTTGGGAGGG+TGG + chr1_2:22485551-22485570 Msa0062750:intron 50.0%
CGTGACCGCAATTATGGTTG+CGG - chr1_2:22486057-22486076 None:intergenic 50.0%
GTACTCCCCCTGATTCACAT+TGG + chr1_2:22486176-22486195 Msa0062750:intron 50.0%
AGCAGCCAATGTGAATCAGG+GGG - chr1_2:22486184-22486203 None:intergenic 50.0%
CAGCAGCCAATGTGAATCAG+GGG - chr1_2:22486185-22486204 None:intergenic 50.0%
GCAGCTGCAAGGAAAGTCAA+AGG + chr1_2:22486412-22486431 Msa0062750:CDS 50.0%
CTCATTGTGGCTGCTATTGC+AGG + chr1_2:22486469-22486488 Msa0062750:CDS 50.0%
CGAGTCACGAGAACCCAAAT+TGG - chr1_2:22486615-22486634 None:intergenic 50.0%
ACTGCAGCCACTGTATTGTC+GGG - chr1_2:22486775-22486794 None:intergenic 50.0%
AGATGCTCGAGCAGAGCATA+GGG - chr1_2:22486822-22486841 None:intergenic 50.0%
AAGATGCTCGAGCAGAGCAT+AGG - chr1_2:22486823-22486842 None:intergenic 50.0%
GCGTCTGAGAGTAGCTTAAC+AGG + chr1_2:22487066-22487085 Msa0062750:CDS 50.0%
! AGTGCCGTTATGCCTCCATT+TGG + chr1_2:22487546-22487565 Msa0062750:intron 50.0%
ACGCTCTGCTAAGAAGCAAG+GGG + chr1_2:22487787-22487806 Msa0062750:CDS 50.0%
GCCAATGGTTTAGCTGGAGC+TGG + chr1_2:22484354-22484373 Msa0062750:CDS 55.0%
! GGTTGGGGTGGACTCTATAG+TGG + chr1_2:22484719-22484738 Msa0062750:CDS 55.0%
CGTGTCAAGTGACCCGATAG+CGG - chr1_2:22485050-22485069 None:intergenic 55.0%
TCTTTGCACACCCCAAGGTC+CGG - chr1_2:22485291-22485310 None:intergenic 55.0%
TGAGCTCTTTGCACACCCCA+AGG - chr1_2:22485296-22485315 None:intergenic 55.0%
GGGGTGTGCAAAGAGCTCAA+TGG + chr1_2:22485297-22485316 Msa0062750:intron 55.0%
CACTTACAGAGCAGAGCCTC+CGG + chr1_2:22485721-22485740 Msa0062750:intron 55.0%
AGCCTCCGGATTCGTAGGAA+CGG + chr1_2:22485735-22485754 Msa0062750:intron 55.0%
CTGTGGCTATTGCAGCTGCA+AGG + chr1_2:22486401-22486420 Msa0062750:CDS 55.0%
GGACATGGAGACGGTACTGT+TGG + chr1_2:22486433-22486452 Msa0062750:CDS 55.0%
GGTTCTCGTGACTCGAATGC+AGG + chr1_2:22486620-22486639 Msa0062750:CDS 55.0%
GGTTTAGCTGGAGCTGGTGG+TGG + chr1_2:22484360-22484379 Msa0062750:CDS 60.0%
TTCTGCTCAAGGCCGGACCT+TGG + chr1_2:22485276-22485295 Msa0062750:intron 60.0%
TCTGCTCAAGGCCGGACCTT+GGG + chr1_2:22485277-22485296 Msa0062750:intron 60.0%
AGCAGAGCCTCCGGATTCGT+AGG + chr1_2:22485730-22485749 Msa0062750:intron 60.0%
CAGGGCCGTTCCTACGAATC+CGG - chr1_2:22485743-22485762 None:intergenic 60.0%
CCTGCAGAGCTACAGCGTAG+TGG - chr1_2:22487625-22487644 None:intergenic 60.0%
! CCACTACGCTGTAGCTCTGC+AGG + chr1_2:22487622-22487641 Msa0062750:intron 60.0%
CTGCTCAAGGCCGGACCTTG+GGG + chr1_2:22485278-22485297 Msa0062750:intron 65.0%
GGCCGTTCCTACGAATCCGG+AGG - chr1_2:22485740-22485759 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 22484125 22487938 22484125 ID=Msa0062750;Name=Msa0062750
chr1_2 mRNA 22484125 22487938 22484125 ID=Msa0062750-mRNA-1;Parent=Msa0062750;Name=Msa0062750-mRNA-1;_AED=0.15;_eAED=0.15;_QI=140|0.85|1|1|0.85|0.75|8|100|242
chr1_2 exon 22484125 22484209 22484125 ID=Msa0062750-mRNA-1:exon:8248;Parent=Msa0062750-mRNA-1
chr1_2 exon 22484278 22484419 22484278 ID=Msa0062750-mRNA-1:exon:8249;Parent=Msa0062750-mRNA-1
chr1_2 exon 22484508 22484621 22484508 ID=Msa0062750-mRNA-1:exon:8250;Parent=Msa0062750-mRNA-1
chr1_2 exon 22484704 22484778 22484704 ID=Msa0062750-mRNA-1:exon:8251;Parent=Msa0062750-mRNA-1
chr1_2 exon 22486361 22486491 22486361 ID=Msa0062750-mRNA-1:exon:8252;Parent=Msa0062750-mRNA-1
chr1_2 exon 22486587 22486641 22486587 ID=Msa0062750-mRNA-1:exon:8253;Parent=Msa0062750-mRNA-1
chr1_2 exon 22487006 22487158 22487006 ID=Msa0062750-mRNA-1:exon:8254;Parent=Msa0062750-mRNA-1
chr1_2 exon 22487725 22487938 22487725 ID=Msa0062750-mRNA-1:exon:8255;Parent=Msa0062750-mRNA-1
chr1_2 five_prime_UTR 22484125 22484209 22484125 ID=Msa0062750-mRNA-1:five_prime_utr;Parent=Msa0062750-mRNA-1
chr1_2 five_prime_UTR 22484278 22484332 22484278 ID=Msa0062750-mRNA-1:five_prime_utr;Parent=Msa0062750-mRNA-1
chr1_2 CDS 22484333 22484419 22484333 ID=Msa0062750-mRNA-1:cds;Parent=Msa0062750-mRNA-1
chr1_2 CDS 22484508 22484621 22484508 ID=Msa0062750-mRNA-1:cds;Parent=Msa0062750-mRNA-1
chr1_2 CDS 22484704 22484778 22484704 ID=Msa0062750-mRNA-1:cds;Parent=Msa0062750-mRNA-1
chr1_2 CDS 22486361 22486491 22486361 ID=Msa0062750-mRNA-1:cds;Parent=Msa0062750-mRNA-1
chr1_2 CDS 22486587 22486641 22486587 ID=Msa0062750-mRNA-1:cds;Parent=Msa0062750-mRNA-1
chr1_2 CDS 22487006 22487158 22487006 ID=Msa0062750-mRNA-1:cds;Parent=Msa0062750-mRNA-1
chr1_2 CDS 22487725 22487838 22487725 ID=Msa0062750-mRNA-1:cds;Parent=Msa0062750-mRNA-1
chr1_2 three_prime_UTR 22487839 22487938 22487839 ID=Msa0062750-mRNA-1:three_prime_utr;Parent=Msa0062750-mRNA-1
Gene Sequence

>Msa0062750

ATGTCAGAGTCAAACGCCATAGCCAATGGTTTAGCTGGAGCTGGTGGTGGAATCATTGCTCAAATATTAACTTATCCACTTCAAGCTGTAAACACACGCCAACAAACTGAGAGAACACTTAAGAGGAACAAGCAAAGTTCTTCTTCCAACACAATAACTACTGCTTCTTCTTCTTCTGGCATTTTTCTTCAGATTTTTCAGGTTATTGGAAATGAAGGTTGGGGTGGACTCTATAGTGGTCTTAAGCCTTCTCTTCTTGGAACTGCTGCTTCTCAGGGAATTTACTACTTCTTCTATCAAGTTTTTAAGAACAAGGCTGTGGCTATTGCAGCTGCAAGGAAAGTCAAAGGACATGGAGACGGTACTGTTGGAATGTTCGGTTGGCTCATTGTGGCTGCTATTGCAGGGTCATTGAATGTTTTGTTCACAAACCCAATTTGGGTTCTCGTGACTCGAATGCAGACACATACTCAAGCAGAAAGAAAAATCTTGGAGGAAAAGAAAGAAGCTTTAAGGAAGGCTGCGTCTGAGAGTAGCTTAACAGGTTCAACTTTGGAAGAAAAGCTAGAAAAACTGAATTCTACAAAGCCTAAACCATTTGGGACTATACATGCTGTATGCAATCCATCGATCCAGTTTATGATTTACGAGAGTTCATTAAAGCATCTAAGGGCAAAACGCTCTGCTAAGAAGCAAGGGGACACGAGTGTAACTGCTTTAGAGGTATAG

Protein sequence

>Msa0062750

MSESNAIANGLAGAGGGIIAQILTYPLQAVNTRQQTERTLKRNKQSSSSNTITTASSSSGIFLQIFQVIGNEGWGGLYSGLKPSLLGTAASQGIYYFFYQVFKNKAVAIAAARKVKGHGDGTVGMFGWLIVAAIAGSLNVLFTNPIWVLVTRMQTHTQAERKILEEKKEALRKAASESSLTGSTLEEKLEKLNSTKPKPFGTIHAVCNPSIQFMIYESSLKHLRAKRSAKKQGDTSVTALEV*