Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0976800 | XP_013451150.1 | 97.198 | 464 | 12 | 1 | 1 | 464 | 1 | 463 | 0.0 | 904 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0976800 | sp|Q9LI61|AVT6A_ARATH | 66.302 | 457 | 151 | 2 | 1 | 455 | 1 | 456 | 0.0 | 613 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0976800 | A0A072U611 | 97.198 | 464 | 12 | 1 | 1 | 464 | 1 | 463 | 0.0 | 904 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0722910 | Msa0976800 | 0.846563 | 2.007839e-59 | -8.615850e-47 |
| Msa0723120 | Msa0976800 | 0.815484 | 9.031455e-52 | -8.615850e-47 |
| Msa0875050 | Msa0976800 | 0.844247 | 8.509363e-59 | -8.615850e-47 |
| Msa0907390 | Msa0976800 | 0.882868 | 7.259424e-71 | -8.615850e-47 |
| Msa0940220 | Msa0976800 | 0.875321 | 3.377522e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0976800 | MtrunA17_Chr6g0455911 | 97.198 | 464 | 12 | 1 | 1 | 464 | 1 | 463 | 0.0 | 904 |
| Msa0976800 | MtrunA17_Chr6g0455981 | 83.991 | 456 | 72 | 1 | 1 | 455 | 1 | 456 | 0.0 | 759 |
| Msa0976800 | MtrunA17_Chr6g0455951 | 81.778 | 450 | 81 | 1 | 7 | 456 | 11 | 459 | 0.0 | 732 |
| Msa0976800 | MtrunA17_Chr6g0455941 | 84.944 | 445 | 67 | 0 | 12 | 456 | 18 | 462 | 0.0 | 727 |
| Msa0976800 | MtrunA17_Chr7g0220531 | 76.404 | 445 | 104 | 1 | 14 | 458 | 22 | 465 | 0.0 | 711 |
| Msa0976800 | MtrunA17_Chr8g0366021 | 59.052 | 464 | 177 | 4 | 8 | 460 | 4 | 465 | 0.0 | 547 |
| Msa0976800 | MtrunA17_Chr6g0459871 | 79.859 | 283 | 53 | 1 | 174 | 456 | 37 | 315 | 1.98e-148 | 426 |
| Msa0976800 | MtrunA17_Chr5g0437951 | 44.676 | 432 | 233 | 3 | 23 | 449 | 11 | 441 | 8.20e-130 | 383 |
| Msa0976800 | MtrunA17_Chr5g0437961 | 45.622 | 434 | 227 | 3 | 19 | 451 | 3 | 428 | 2.30e-128 | 379 |
| Msa0976800 | MtrunA17_Chr3g0114351 | 43.736 | 439 | 237 | 4 | 19 | 455 | 8 | 438 | 5.87e-121 | 360 |
| Msa0976800 | MtrunA17_Chr2g0333321 | 45.714 | 420 | 220 | 4 | 39 | 455 | 73 | 487 | 3.27e-120 | 360 |
| Msa0976800 | MtrunA17_Chr8g0366001 | 62.963 | 270 | 99 | 1 | 191 | 460 | 4 | 272 | 4.45e-120 | 352 |
| Msa0976800 | MtrunA17_Chr8g0365971 | 52.604 | 192 | 77 | 2 | 15 | 192 | 11 | 202 | 8.91e-59 | 192 |
| Msa0976800 | MtrunA17_Chr8g0365991 | 46.857 | 175 | 78 | 4 | 12 | 175 | 8 | 178 | 1.21e-37 | 135 |
| Msa0976800 | MtrunA17_Chr3g0114341 | 39.815 | 108 | 58 | 1 | 28 | 128 | 2 | 109 | 2.56e-19 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0976800 | AT3G30390.1 | 66.302 | 457 | 151 | 2 | 1 | 455 | 1 | 456 | 0.0 | 613 |
| Msa0976800 | AT3G30390.3 | 66.302 | 457 | 151 | 2 | 1 | 455 | 1 | 456 | 0.0 | 613 |
| Msa0976800 | AT3G30390.2 | 66.302 | 457 | 151 | 2 | 1 | 455 | 1 | 456 | 0.0 | 613 |
| Msa0976800 | AT5G38820.2 | 66.516 | 442 | 145 | 2 | 16 | 455 | 15 | 455 | 0.0 | 600 |
| Msa0976800 | AT5G38820.1 | 66.516 | 442 | 145 | 2 | 16 | 455 | 10 | 450 | 0.0 | 600 |
| Msa0976800 | AT5G38820.3 | 66.516 | 442 | 145 | 2 | 16 | 455 | 10 | 450 | 0.0 | 600 |
| Msa0976800 | AT3G56200.1 | 41.958 | 429 | 243 | 3 | 24 | 451 | 9 | 432 | 1.81e-113 | 341 |
| Msa0976800 | AT2G40420.1 | 43.488 | 430 | 239 | 4 | 21 | 449 | 6 | 432 | 1.23e-110 | 334 |
| Msa0976800 | AT1G80510.1 | 44.181 | 421 | 226 | 4 | 39 | 455 | 73 | 488 | 6.72e-106 | 323 |
| Msa0976800 | AT2G42005.1 | 21.522 | 460 | 286 | 14 | 6 | 447 | 4 | 406 | 1.26e-12 | 69.7 |
| Msa0976800 | AT2G41190.1 | 22.458 | 472 | 310 | 12 | 9 | 457 | 98 | 536 | 1.07e-11 | 67.4 |
| Msa0976800 | AT5G02180.1 | 24.208 | 442 | 294 | 16 | 23 | 454 | 137 | 547 | 3.89e-11 | 65.5 |
| Msa0976800 | AT5G02180.2 | 24.208 | 442 | 294 | 16 | 23 | 454 | 137 | 547 | 3.89e-11 | 65.5 |
Find 122 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCCTATGGAAGTCTTA+TGG | 0.192560 | 6_4:+11000206 | Msa0976800:CDS |
| ATTGTAGGTGATGTGGTTTC+TGG | 0.203431 | 6_4:+11000699 | Msa0976800:intron |
| TACTTACTGACAAGCTTCTT+TGG | 0.220453 | 6_4:+11002086 | Msa0976800:CDS |
| ATTGTCTACATGATTATTAT+TGG | 0.230979 | 6_4:+11000300 | Msa0976800:CDS |
| TCCAAGATTAGTATCGAAAT+TGG | 0.250594 | 6_4:-11002150 | None:intergenic |
| CTAGTCAGCTTTAAGCAAAT+TGG | 0.260064 | 6_4:+11000837 | Msa0976800:CDS |
| GTCGAGTTACATGAATTTAA+TGG | 0.261172 | 6_4:+11000000 | Msa0976800:CDS |
| TTCTTTGGGTTCCTCCTATT+CGG | 0.282122 | 6_4:+11002101 | Msa0976800:CDS |
| CACAAAACTGTATGTTTATA+CGG | 0.282955 | 6_4:+11003087 | Msa0976800:three_prime_UTR |
| CAAATTTCATACCTAGCATT+TGG | 0.283202 | 6_4:+11002375 | Msa0976800:CDS |
| AACAAGGTTGAACAAGTTTC+AGG | 0.294861 | 6_4:-11003002 | None:intergenic |
| GCAACTGCTGCTGTTTGTTT+AGG | 0.298977 | 6_4:+11002419 | Msa0976800:CDS |
| TCTTCCTATGGAAGTCTTAT+GGG | 0.299793 | 6_4:+11000207 | Msa0976800:CDS |
| GCCAATTTCGATACTAATCT+TGG | 0.305913 | 6_4:+11002149 | Msa0976800:CDS |
| ACTAATCTTGGAATTCCTTT+TGG | 0.308712 | 6_4:+11002161 | Msa0976800:CDS |
| GTTCCTTTCATCTGAATGTA+TGG | 0.327382 | 6_4:-11002869 | None:intergenic |
| GGACAAAATCTTGTCCGTTT+TGG | 0.330100 | 6_4:-11002717 | None:intergenic |
| AATTTATCGACAACAGTTAT+CGG | 0.330888 | 6_4:+11000048 | Msa0976800:CDS |
| ACTTACTGACAAGCTTCTTT+GGG | 0.334326 | 6_4:+11002087 | Msa0976800:CDS |
| GGGGATGCCTTTGGGAGATA+TGG | 0.338725 | 6_4:+11000228 | Msa0976800:CDS |
| TGTAATGACCGGGAAGAGTC+TGG | 0.344246 | 6_4:-11001373 | None:intergenic |
| TCAAGTGGAATTCACCATTC+TGG | 0.345896 | 6_4:+11000729 | Msa0976800:CDS |
| TCATTTATGTTGTATTTGTC+GGG | 0.349416 | 6_4:+11003139 | Msa0976800:three_prime_UTR |
| GTCCGTCTTTATGATAGTTC+TGG | 0.349655 | 6_4:+11002736 | Msa0976800:CDS |
| TTTGGTGTCCATTGGTGGAC+TGG | 0.358328 | 6_4:+11000768 | Msa0976800:CDS |
| ATCATTTATGTTGTATTTGT+CGG | 0.359609 | 6_4:+11003138 | Msa0976800:three_prime_UTR |
| TTCCCTTACTTTATGCTCTT+CGG | 0.362631 | 6_4:+11002061 | Msa0976800:CDS |
| CCTGCCTGTGTGAAGAAGTT+GGG | 0.363110 | 6_4:+11000090 | Msa0976800:CDS |
| TGGGATGCCCAGACTCTTCC+CGG | 0.371056 | 6_4:+11001365 | Msa0976800:CDS |
| AAATTTCATACCTAGCATTT+GGG | 0.394418 | 6_4:+11002376 | Msa0976800:CDS |
| CAATAGTAATCGACGCAAAT+CGG | 0.398764 | 6_4:-11002325 | None:intergenic |
| AGAGAGTATCGTCGCCGAAT+AGG | 0.399773 | 6_4:-11002115 | None:intergenic |
| CACCATTCTGGTATCCTTGA+AGG | 0.400665 | 6_4:+11000741 | Msa0976800:CDS |
| AATGTAAGAGAGGCATTTGT+TGG | 0.405056 | 6_4:+11003207 | Msa0976800:three_prime_UTR |
| CAGCAGTTGCTCCAGTGAAC+TGG | 0.416309 | 6_4:-11002406 | None:intergenic |
| ACATCGGTTTCTTGAGACTT+AGG | 0.416955 | 6_4:-10999979 | None:intergenic |
| TTGAATGTGCTCTATTTCCC+TGG | 0.423717 | 6_4:+11003168 | Msa0976800:three_prime_UTR |
| TTGGTGTCCATTGGTGGACT+GGG | 0.426711 | 6_4:+11000769 | Msa0976800:CDS |
| AGTTATCGGTGCTGGAATCA+TGG | 0.432344 | 6_4:+11000062 | Msa0976800:CDS |
| TCGATTACTATTGCGCTTGT+CGG | 0.435608 | 6_4:+11002335 | Msa0976800:CDS |
| GCAGGGAATCTTTCTTCCTA+TGG | 0.437556 | 6_4:+11000195 | Msa0976800:CDS |
| GGTATCCTTGAAGGATGGTT+TGG | 0.437844 | 6_4:+11000750 | Msa0976800:CDS |
| TTAATTGTACACAACATGTC+TGG | 0.441138 | 6_4:+11003040 | Msa0976800:three_prime_UTR |
| CTTCCTATGGAAGTCTTATG+GGG | 0.450418 | 6_4:+11000208 | Msa0976800:CDS |
| TACTTCAGAGTGACTGCAGC+TGG | 0.450710 | 6_4:-11002452 | None:intergenic |
| TTTATCGAAGAGATGAATCC+AGG | 0.456224 | 6_4:-11003186 | None:intergenic |
| TCGACAACAGTTATCGGTGC+TGG | 0.457161 | 6_4:+11000054 | Msa0976800:CDS |
| GCCTGCCTGTGTGAAGAAGT+TGG | 0.459159 | 6_4:+11000089 | Msa0976800:CDS |
| AAGGAAGAACAAGGAGGTTG+TGG | 0.463517 | 6_4:+10999936 | Msa0976800:CDS |
| AAGATTATAAGTGGTGGCAT+TGG | 0.464098 | 6_4:+11001345 | Msa0976800:CDS |
| AGATTATAAGTGGTGGCATT+GGG | 0.464351 | 6_4:+11001346 | Msa0976800:CDS |
| TTCACATCTGCATTATCAGT+TGG | 0.466970 | 6_4:+11001276 | Msa0976800:CDS |
| GCACTTGTCTGCATTATCAA+TGG | 0.473504 | 6_4:+11003229 | Msa0976800:three_prime_UTR |
| AAGGATGGTTTGGTGTCCAT+TGG | 0.478302 | 6_4:+11000760 | Msa0976800:CDS |
| GATGGTTTGGTGTCCATTGG+TGG | 0.485337 | 6_4:+11000763 | Msa0976800:CDS |
| TTCCTCATCAAGAAGGCCAT+TGG | 0.485732 | 6_4:+11002289 | Msa0976800:CDS |
| AAACCGAAGAGCATAAAGTA+AGG | 0.488976 | 6_4:-11002064 | None:intergenic |
| AAGAAGTTGGGGATGGTGCC+TGG | 0.489355 | 6_4:+11000102 | Msa0976800:CDS |
| GCTTGTCGGCATTATCTACA+TGG | 0.490533 | 6_4:+11002349 | Msa0976800:CDS |
| GTCTGCATTATCAATGGCTA+AGG | 0.491029 | 6_4:+11003235 | Msa0976800:three_prime_UTR |
| AGTCAGTTGAATTCATGCTC+AGG | 0.495549 | 6_4:+11000163 | Msa0976800:CDS |
| CAGAGAAGAAGAAGAAAACA+AGG | 0.497508 | 6_4:+10999917 | Msa0976800:CDS |
| CTCAATGCATAGAAAACTAC+AGG | 0.499017 | 6_4:-11002242 | None:intergenic |
| AGATCCCTACGGCAATGATA+AGG | 0.499574 | 6_4:-11001314 | None:intergenic |
| TCACAACATAGATAATGAAC+TGG | 0.502876 | 6_4:+11002004 | Msa0976800:CDS |
| CCCAACTTCTTCACACAGGC+AGG | 0.505095 | 6_4:-11000090 | None:intergenic |
| GAGTATCGTCGCCGAATAGG+AGG | 0.508983 | 6_4:-11002112 | None:intergenic |
| GCATTGAGGGTTAACATAGA+TGG | 0.509658 | 6_4:+11002257 | Msa0976800:CDS |
| TGCTGTTGTGTATGAAAGAA+TGG | 0.509869 | 6_4:+11003262 | Msa0976800:three_prime_UTR |
| GGACACCAAACCATCCTTCA+AGG | 0.515087 | 6_4:-11000755 | None:intergenic |
| GAAGCTGCGTCTGTAATGAC+CGG | 0.522323 | 6_4:-11001384 | None:intergenic |
| GAAAGGAACATAATTTGCTA+TGG | 0.523047 | 6_4:+11002883 | Msa0976800:three_prime_UTR |
| ATGAACTGGAGGACTCCTCA+TGG | 0.529674 | 6_4:+11002018 | Msa0976800:CDS |
| GTTATCGGTGCTGGAATCAT+GGG | 0.537356 | 6_4:+11000063 | Msa0976800:CDS |
| ATTCACTGTAGTTCCTGTGC+TGG | 0.540887 | 6_4:+11001419 | Msa0976800:CDS |
| AATCAACCCACCGAACCCTA+TGG | 0.540992 | 6_4:-11002926 | None:intergenic |
| TCAATTATCAAGATTATAAG+TGG | 0.544500 | 6_4:+11001336 | Msa0976800:CDS |
| TTTCCATACATTCAGATGAA+AGG | 0.546411 | 6_4:+11002866 | Msa0976800:three_prime_UTR |
| ATGTAAGCAGTCACCAGCAC+AGG | 0.549640 | 6_4:-11001432 | None:intergenic |
| AGGAAGAACAAGGAGGTTGT+GGG | 0.553210 | 6_4:+10999937 | Msa0976800:CDS |
| AAACACAGCAAGTGTTGTAA+AGG | 0.554610 | 6_4:-11000808 | None:intergenic |
| TGGAAAAGATCCCAAATGCT+AGG | 0.555841 | 6_4:-11002386 | None:intergenic |
| ACACAACATAGCAACCAAAA+CGG | 0.557113 | 6_4:+11002703 | Msa0976800:CDS |
| GAAGAAAACAAGGAAGAACA+AGG | 0.565028 | 6_4:+10999927 | Msa0976800:CDS |
| AACCAATGGCCTTCTTGATG+AGG | 0.567288 | 6_4:-11002291 | None:intergenic |
| ATTCTGGTATCCTTGAAGGA+TGG | 0.574553 | 6_4:+11000745 | Msa0976800:CDS |
| ATGTACGCCCAGTCCACCAA+TGG | 0.578995 | 6_4:-11000776 | None:intergenic |
| GATTTGATAGATCACAGTAC+AGG | 0.579930 | 6_4:+11002841 | Msa0976800:exon |
| TGTTCGTATTGTAGGTGATG+TGG | 0.580575 | 6_4:+11000692 | Msa0976800:intron |
| GGCAGTCTTGTCAAATGCCG+TGG | 0.581009 | 6_4:+11002757 | Msa0976800:CDS |
| GAGGACTCCTCATGGATGCA+TGG | 0.582116 | 6_4:+11002026 | Msa0976800:CDS |
| AACCGAAGAGCATAAAGTAA+GGG | 0.583529 | 6_4:-11002063 | None:intergenic |
| TTCCTATGGAAGTCTTATGG+GGG | 0.584352 | 6_4:+11000209 | Msa0976800:CDS |
| ATCCTTCAAGGATACCAGAA+TGG | 0.584684 | 6_4:-11000743 | None:intergenic |
| CTGCCTGTGTGAAGAAGTTG+GGG | 0.586666 | 6_4:+11000091 | Msa0976800:CDS |
| CATTTATGTTGTATTTGTCG+GGG | 0.592028 | 6_4:+11003140 | Msa0976800:three_prime_UTR |
| GTTTCTGGAACAACTTCAAG+TGG | 0.596954 | 6_4:+11000714 | Msa0976800:CDS |
| CTTGTCGGCATTATCTACAT+GGG | 0.607745 | 6_4:+11002350 | Msa0976800:CDS |
| CTCTTCGATAAATGTAAGAG+AGG | 0.607866 | 6_4:+11003197 | Msa0976800:three_prime_UTR |
| TCTTGAGACTTAGGTAACAA+AGG | 0.609991 | 6_4:-10999970 | None:intergenic |
| CGGAAGTTATCAACAACCAA+TGG | 0.611817 | 6_4:-11002305 | None:intergenic |
| AAATTCATGTAACTCGACAT+CGG | 0.612356 | 6_4:-10999995 | None:intergenic |
| TTGAAGAATATTTGTACACA+TGG | 0.614750 | 6_4:-11002967 | None:intergenic |
| CTGTGTGAAGAAGTTGGGGA+TGG | 0.616486 | 6_4:+11000095 | Msa0976800:CDS |
| TCATTGAGTGCAGAACCAAA+AGG | 0.617151 | 6_4:-11002176 | None:intergenic |
| AAGCTGCGTCTGTAATGACC+GGG | 0.621936 | 6_4:-11001383 | None:intergenic |
| TCTGCATTATCAATGGCTAA+GGG | 0.622627 | 6_4:+11003236 | Msa0976800:three_prime_UTR |
| TTATCGAAGAGATGAATCCA+GGG | 0.622804 | 6_4:-11003185 | None:intergenic |
| ATTATCAAGATTATAAGTGG+TGG | 0.624119 | 6_4:+11001339 | Msa0976800:CDS |
| TGCCAGAACTATCATAAAGA+CGG | 0.627082 | 6_4:-11002738 | None:intergenic |
| CAACATAGATAATGAACTGG+AGG | 0.629044 | 6_4:+11002007 | Msa0976800:CDS |
| AGCATCACTGTATATAGCCA+CGG | 0.632052 | 6_4:-11002774 | None:intergenic |
| GCTTACATCTGTCACTACAA+TGG | 0.634218 | 6_4:+11001447 | Msa0976800:CDS |
| ATATTCTTCAAAGTATGTGA+AGG | 0.639886 | 6_4:+11002979 | Msa0976800:three_prime_UTR |
| CTTGATAATTGAGATCCCTA+CGG | 0.641158 | 6_4:-11001325 | None:intergenic |
| TGTGTTGTTATCAATAACGT+TGG | 0.647856 | 6_4:+11000270 | Msa0976800:CDS |
| ATTTGCTTAAAGCTGACTAG+AGG | 0.659050 | 6_4:-11000834 | None:intergenic |
| CATCCCCAACTTCTTCACAC+AGG | 0.698282 | 6_4:-11000094 | None:intergenic |
| ACAGTACTCTAATACAAACA+AGG | 0.700951 | 6_4:-11003018 | None:intergenic |
| AGGACTATAGCAATAAGACC+AGG | 0.708838 | 6_4:-11000120 | None:intergenic |
| CACGACGCCATGCATCCATG+AGG | 0.731823 | 6_4:-11002033 | None:intergenic |
| GAAAACAAGGAAGAACAAGG+AGG | 0.744501 | 6_4:+10999930 | Msa0976800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAAAATAGTATTTATATT+AGG | + | chr6_4:11001133-11001152 | Msa0976800:intron | 10.0% |
| !! | ATAGTATTTATATTAGGATT+TGG | + | chr6_4:11001139-11001158 | Msa0976800:intron | 15.0% |
| !!! | CAAATTATTTTGTTTATTTC+TGG | + | chr6_4:11001603-11001622 | Msa0976800:intron | 15.0% |
| !!! | CAATTCATTTCATTTTATAA+TGG | + | chr6_4:11002487-11002506 | Msa0976800:intron | 15.0% |
| !!! | TTGTTTAGTTAAATTTTAGT+AGG | - | chr6_4:11002558-11002577 | None:intergenic | 15.0% |
| !! | TACTAAAATTTAACTAAACA+AGG | + | chr6_4:11002557-11002576 | Msa0976800:intron | 15.0% |
| !!! | ATTAAATTAATTTTCTCCAT+AGG | + | chr6_4:11002910-11002929 | Msa0976800:three_prime_UTR | 15.0% |
| !!! | TTAAATTAATTTTCTCCATA+GGG | + | chr6_4:11002911-11002930 | Msa0976800:three_prime_UTR | 15.0% |
| !! | ATTGTCTACATGATTATTAT+TGG | + | chr6_4:11000300-11000319 | Msa0976800:CDS | 20.0% |
| !!! | GTACTAGATTTTTAAGAATA+TGG | - | chr6_4:11000332-11000351 | None:intergenic | 20.0% |
| !! | CTTATAAAATTACAAGTTAC+TGG | + | chr6_4:11000925-11000944 | Msa0976800:intron | 20.0% |
| !! | TCAATTATCAAGATTATAAG+TGG | + | chr6_4:11001336-11001355 | Msa0976800:CDS | 20.0% |
| !! | ACAAAATAATTTGAAAAGAG+TGG | - | chr6_4:11001596-11001615 | None:intergenic | 20.0% |
| !! | ATCATTTATGTTGTATTTGT+CGG | + | chr6_4:11003138-11003157 | Msa0976800:three_prime_UTR | 20.0% |
| ! | CATACAAATCCAAATAGATT+TGG | - | chr6_4:10999667-10999686 | None:intergenic | 25.0% |
| ! | TGAAGAAAAGATTCAAACTT+TGG | - | chr6_4:10999800-10999819 | None:intergenic | 25.0% |
| ! | AATTTATCGACAACAGTTAT+CGG | + | chr6_4:11000048-11000067 | Msa0976800:CDS | 25.0% |
| !!! | TTTTGTTTTGTTCGTATTGT+AGG | + | chr6_4:11000684-11000703 | Msa0976800:intron | 25.0% |
| ! | ATAAATTAGATGACAGTGAT+AGG | + | chr6_4:11000950-11000969 | Msa0976800:intron | 25.0% |
| ! | ATTATCAAGATTATAAGTGG+TGG | + | chr6_4:11001339-11001358 | Msa0976800:CDS | 25.0% |
| ! | CAATAACCAATTCAGATTTA+CGG | - | chr6_4:11001543-11001562 | None:intergenic | 25.0% |
| ! | AATAATTTGAAAAGAGTGGT+CGG | - | chr6_4:11001592-11001611 | None:intergenic | 25.0% |
| ! | AAATTTCATACCTAGCATTT+GGG | + | chr6_4:11002376-11002395 | Msa0976800:CDS | 25.0% |
| ! | GTTTGTTTCAAACTAAAGAA+TGG | - | chr6_4:11002534-11002553 | None:intergenic | 25.0% |
| ! | AAATTTAACTAAACAAGGTG+AGG | + | chr6_4:11002562-11002581 | Msa0976800:intron | 25.0% |
| !!! | TAAGCATTTTGTTTTCTTAC+AGG | + | chr6_4:11002675-11002694 | Msa0976800:intron | 25.0% |
| !!! | AAGCATTTTGTTTTCTTACA+GGG | + | chr6_4:11002676-11002695 | Msa0976800:intron | 25.0% |
| ! | TTGAAGAATATTTGTACACA+TGG | - | chr6_4:11002970-11002989 | None:intergenic | 25.0% |
| ! | ATATTCTTCAAAGTATGTGA+AGG | + | chr6_4:11002979-11002998 | Msa0976800:three_prime_UTR | 25.0% |
| ! | CACAAAACTGTATGTTTATA+CGG | + | chr6_4:11003087-11003106 | Msa0976800:three_prime_UTR | 25.0% |
| ! | TCATTTATGTTGTATTTGTC+GGG | + | chr6_4:11003139-11003158 | Msa0976800:three_prime_UTR | 25.0% |
| ! | CAAATCCAAATAGATTTGGT+TGG | - | chr6_4:10999663-10999682 | None:intergenic | 30.0% |
| AAATTCATGTAACTCGACAT+CGG | - | chr6_4:10999998-11000017 | None:intergenic | 30.0% | |
| GTCGAGTTACATGAATTTAA+TGG | + | chr6_4:11000000-11000019 | Msa0976800:CDS | 30.0% | |
| ! | TTTAATGGAGCTTCATTTTC+AGG | + | chr6_4:11000015-11000034 | Msa0976800:CDS | 30.0% |
| ! | TGTGTTGTTATCAATAACGT+TGG | + | chr6_4:11000270-11000289 | Msa0976800:CDS | 30.0% |
| TTCTACTGTTATCATCAGTT+TGG | + | chr6_4:11000364-11000383 | Msa0976800:intron | 30.0% | |
| TCAACATGTCAATTTCAATG+AGG | + | chr6_4:11000464-11000483 | Msa0976800:intron | 30.0% | |
| AGCTACAAAGTGTATCTTTA+TGG | + | chr6_4:11000570-11000589 | Msa0976800:intron | 30.0% | |
| CTTGTCACTGAAGTATAAAT+TGG | + | chr6_4:11001005-11001024 | Msa0976800:intron | 30.0% | |
| ! | CCACAAAACATCTAAAACTA+AGG | - | chr6_4:11001189-11001208 | None:intergenic | 30.0% |
| !!! | CCTTAGTTTTAGATGTTTTG+TGG | + | chr6_4:11001186-11001205 | Msa0976800:intron | 30.0% |
| !! | GAGAAATTAGTTCTAGACAA+AGG | - | chr6_4:11001490-11001509 | None:intergenic | 30.0% |
| ACGGAAGTTATTAAGCATAA+GGG | - | chr6_4:11001524-11001543 | None:intergenic | 30.0% | |
| TACGGAAGTTATTAAGCATA+AGG | - | chr6_4:11001525-11001544 | None:intergenic | 30.0% | |
| TAACTTCCGTAAATCTGAAT+TGG | + | chr6_4:11001534-11001553 | Msa0976800:intron | 30.0% | |
| GATTTGCATTAAGAAGTTCA+AGG | + | chr6_4:11001562-11001581 | Msa0976800:intron | 30.0% | |
| ! | CAAAATGCAGGTAATCATTT+TGG | - | chr6_4:11001673-11001692 | None:intergenic | 30.0% |
| ! | AAATGATTACCTGCATTTTG+CGG | + | chr6_4:11001673-11001692 | Msa0976800:intron | 30.0% |
| !! | TGTAAGTACTGAATAGCATA+GGG | - | chr6_4:11001828-11001847 | None:intergenic | 30.0% |
| !! | TTGTAAGTACTGAATAGCAT+AGG | - | chr6_4:11001829-11001848 | None:intergenic | 30.0% |
| TGTGATCAAATAGTAGCTAT+AGG | + | chr6_4:11001851-11001870 | Msa0976800:intron | 30.0% | |
| GTGATCAAATAGTAGCTATA+GGG | + | chr6_4:11001852-11001871 | Msa0976800:intron | 30.0% | |
| TGATCAAATAGTAGCTATAG+GGG | + | chr6_4:11001853-11001872 | Msa0976800:intron | 30.0% | |
| TTATCCAATGTTGTCAATCT+CGG | - | chr6_4:11001895-11001914 | None:intergenic | 30.0% | |
| TCACAACATAGATAATGAAC+TGG | + | chr6_4:11002004-11002023 | Msa0976800:CDS | 30.0% | |
| ! | TCCAAGATTAGTATCGAAAT+TGG | - | chr6_4:11002153-11002172 | None:intergenic | 30.0% |
| ! | ACTAATCTTGGAATTCCTTT+TGG | + | chr6_4:11002161-11002180 | Msa0976800:CDS | 30.0% |
| ! | TGTAGTTTTCTATGCATTGA+GGG | + | chr6_4:11002244-11002263 | Msa0976800:CDS | 30.0% |
| ! | TGATATTTTCCTCATCAAGA+AGG | + | chr6_4:11002282-11002301 | Msa0976800:CDS | 30.0% |
| CAAATTTCATACCTAGCATT+TGG | + | chr6_4:11002375-11002394 | Msa0976800:CDS | 30.0% | |
| TTTCCATACATTCAGATGAA+AGG | + | chr6_4:11002866-11002885 | Msa0976800:three_prime_UTR | 30.0% | |
| !! | GAAAGGAACATAATTTGCTA+TGG | + | chr6_4:11002883-11002902 | Msa0976800:three_prime_UTR | 30.0% |
| ! | TTAATTTTCTCCATAGGGTT+CGG | + | chr6_4:11002916-11002935 | Msa0976800:three_prime_UTR | 30.0% |
| ACAGTACTCTAATACAAACA+AGG | - | chr6_4:11003021-11003040 | None:intergenic | 30.0% | |
| TTAATTGTACACAACATGTC+TGG | + | chr6_4:11003040-11003059 | Msa0976800:three_prime_UTR | 30.0% | |
| CATTTATGTTGTATTTGTCG+GGG | + | chr6_4:11003140-11003159 | Msa0976800:three_prime_UTR | 30.0% | |
| CTCAACCAACCAAATCTATT+TGG | + | chr6_4:10999655-10999674 | Msa0976800:intron | 35.0% | |
| CAGAGAAGAAGAAGAAAACA+AGG | + | chr6_4:10999917-10999936 | Msa0976800:CDS | 35.0% | |
| GAAGAAAACAAGGAAGAACA+AGG | + | chr6_4:10999927-10999946 | Msa0976800:CDS | 35.0% | |
| TCTTGAGACTTAGGTAACAA+AGG | - | chr6_4:10999973-10999992 | None:intergenic | 35.0% | |
| TCTCTGTCAAAAATGCTGTT+AGG | - | chr6_4:11000143-11000162 | None:intergenic | 35.0% | |
| ! | AATTCATGCTCAGGTTTTCA+AGG | + | chr6_4:11000172-11000191 | Msa0976800:CDS | 35.0% |
| ! | ATTCATGCTCAGGTTTTCAA+GGG | + | chr6_4:11000173-11000192 | Msa0976800:CDS | 35.0% |
| TTCTTCCTATGGAAGTCTTA+TGG | + | chr6_4:11000206-11000225 | Msa0976800:CDS | 35.0% | |
| ! | TCTTCCTATGGAAGTCTTAT+GGG | + | chr6_4:11000207-11000226 | Msa0976800:CDS | 35.0% |
| !!! | GTTTGGTTTTCGTGTATGTT+TGG | + | chr6_4:11000381-11000400 | Msa0976800:intron | 35.0% |
| TGACATGTTGACACATGTAT+CGG | - | chr6_4:11000455-11000474 | None:intergenic | 35.0% | |
| ! | GTCAATTTCAATGAGGTGTT+TGG | + | chr6_4:11000471-11000490 | Msa0976800:intron | 35.0% |
| TGTCTATGTCAGTGTTTCAT+TGG | + | chr6_4:11000494-11000513 | Msa0976800:intron | 35.0% | |
| ! | ATGTCAGTGTTTCATTGGTT+TGG | + | chr6_4:11000499-11000518 | Msa0976800:intron | 35.0% |
| GTTATCGTGATTTCACCAAA+CGG | - | chr6_4:11000534-11000553 | None:intergenic | 35.0% | |
| GTAGCTCAAACAAAATCACA+GGG | - | chr6_4:11000556-11000575 | None:intergenic | 35.0% | |
| TGTAGCTCAAACAAAATCAC+AGG | - | chr6_4:11000557-11000576 | None:intergenic | 35.0% | |
| ! | GATTAGCCATAAGTCTGTTT+AGG | + | chr6_4:11000635-11000654 | Msa0976800:intron | 35.0% |
| TTCTTGCCTAAACAGACTTA+TGG | - | chr6_4:11000644-11000663 | None:intergenic | 35.0% | |
| TCTGTTTAGGCAAGAACTTA+AGG | + | chr6_4:11000648-11000667 | Msa0976800:intron | 35.0% | |
| ! | AAACACAGCAAGTGTTGTAA+AGG | - | chr6_4:11000811-11000830 | None:intergenic | 35.0% |
| ATTTGCTTAAAGCTGACTAG+AGG | - | chr6_4:11000837-11000856 | None:intergenic | 35.0% | |
| !! | CTAGTCAGCTTTAAGCAAAT+TGG | + | chr6_4:11000837-11000856 | Msa0976800:CDS | 35.0% |
| TATACTTCAGTGACAAGCTA+TGG | - | chr6_4:11001002-11001021 | None:intergenic | 35.0% | |
| !!! | TACAATCGAGTTTTGTTGCT+AGG | + | chr6_4:11001036-11001055 | Msa0976800:intron | 35.0% |
| !!! | AGTTTTGTTGCTAGGTTGTT+TGG | + | chr6_4:11001044-11001063 | Msa0976800:intron | 35.0% |
| TTCACATCTGCATTATCAGT+TGG | + | chr6_4:11001276-11001295 | Msa0976800:CDS | 35.0% | |
| ! | TTTTCCTTATCATTGCCGTA+GGG | + | chr6_4:11001310-11001329 | Msa0976800:CDS | 35.0% |
| ! | CTTGATAATTGAGATCCCTA+CGG | - | chr6_4:11001328-11001347 | None:intergenic | 35.0% |
| AAGATTATAAGTGGTGGCAT+TGG | + | chr6_4:11001345-11001364 | Msa0976800:CDS | 35.0% | |
| AGATTATAAGTGGTGGCATT+GGG | + | chr6_4:11001346-11001365 | Msa0976800:CDS | 35.0% | |
| TATACATCTATGACGCAAAC+AGG | - | chr6_4:11001946-11001965 | None:intergenic | 35.0% | |
| CAACATAGATAATGAACTGG+AGG | + | chr6_4:11002007-11002026 | Msa0976800:CDS | 35.0% | |
| TTCCCTTACTTTATGCTCTT+CGG | + | chr6_4:11002061-11002080 | Msa0976800:CDS | 35.0% | |
| ! | AACCGAAGAGCATAAAGTAA+GGG | - | chr6_4:11002066-11002085 | None:intergenic | 35.0% |
| ! | AAACCGAAGAGCATAAAGTA+AGG | - | chr6_4:11002067-11002086 | None:intergenic | 35.0% |
| TACTTACTGACAAGCTTCTT+TGG | + | chr6_4:11002086-11002105 | Msa0976800:CDS | 35.0% | |
| ACTTACTGACAAGCTTCTTT+GGG | + | chr6_4:11002087-11002106 | Msa0976800:CDS | 35.0% | |
| GCCAATTTCGATACTAATCT+TGG | + | chr6_4:11002149-11002168 | Msa0976800:CDS | 35.0% | |
| CTCAATGCATAGAAAACTAC+AGG | - | chr6_4:11002245-11002264 | None:intergenic | 35.0% | |
| ! | CTGTAGTTTTCTATGCATTG+AGG | + | chr6_4:11002243-11002262 | Msa0976800:CDS | 35.0% |
| CAATAGTAATCGACGCAAAT+CGG | - | chr6_4:11002328-11002347 | None:intergenic | 35.0% | |
| AACTAAACAAGGTGAGGTAA+TGG | + | chr6_4:11002568-11002587 | Msa0976800:intron | 35.0% | |
| !! | TTTTGGTTGCTATGTTGTGT+CGG | - | chr6_4:11002703-11002722 | None:intergenic | 35.0% |
| ACACAACATAGCAACCAAAA+CGG | + | chr6_4:11002703-11002722 | Msa0976800:CDS | 35.0% | |
| TGCCAGAACTATCATAAAGA+CGG | - | chr6_4:11002741-11002760 | None:intergenic | 35.0% | |
| GATTTGATAGATCACAGTAC+AGG | + | chr6_4:11002841-11002860 | Msa0976800:exon | 35.0% | |
| GTTCCTTTCATCTGAATGTA+TGG | - | chr6_4:11002872-11002891 | None:intergenic | 35.0% | |
| AACAAGGTTGAACAAGTTTC+AGG | - | chr6_4:11003005-11003024 | None:intergenic | 35.0% | |
| TTATCGAAGAGATGAATCCA+GGG | - | chr6_4:11003188-11003207 | None:intergenic | 35.0% | |
| TTTATCGAAGAGATGAATCC+AGG | - | chr6_4:11003189-11003208 | None:intergenic | 35.0% | |
| CTCTTCGATAAATGTAAGAG+AGG | + | chr6_4:11003197-11003216 | Msa0976800:three_prime_UTR | 35.0% | |
| !! | AATGTAAGAGAGGCATTTGT+TGG | + | chr6_4:11003207-11003226 | Msa0976800:three_prime_UTR | 35.0% |
| TCTGCATTATCAATGGCTAA+GGG | + | chr6_4:11003236-11003255 | Msa0976800:three_prime_UTR | 35.0% | |
| TGCTGTTGTGTATGAAAGAA+TGG | + | chr6_4:11003262-11003281 | Msa0976800:three_prime_UTR | 35.0% | |
| GAAAACAAGGAAGAACAAGG+AGG | + | chr6_4:10999930-10999949 | Msa0976800:CDS | 40.0% | |
| !! | ACATCGGTTTCTTGAGACTT+AGG | - | chr6_4:10999982-11000001 | None:intergenic | 40.0% |
| AGGACTATAGCAATAAGACC+AGG | - | chr6_4:11000123-11000142 | None:intergenic | 40.0% | |
| AGTCAGTTGAATTCATGCTC+AGG | + | chr6_4:11000163-11000182 | Msa0976800:CDS | 40.0% | |
| ! | CTTCCTATGGAAGTCTTATG+GGG | + | chr6_4:11000208-11000227 | Msa0976800:CDS | 40.0% |
| ! | TTCCTATGGAAGTCTTATGG+GGG | + | chr6_4:11000209-11000228 | Msa0976800:CDS | 40.0% |
| ! | TGCTTTTCCATATCTCCCAA+AGG | - | chr6_4:11000238-11000257 | None:intergenic | 40.0% |
| ! | GTTTTCGTGTATGTTTGGAG+TGG | + | chr6_4:11000386-11000405 | Msa0976800:intron | 40.0% |
| ! | TATGTTTGGAGTGGTGTGAT+TGG | + | chr6_4:11000395-11000414 | Msa0976800:intron | 40.0% |
| !! | CAGTGTTTCATTGGTTTGGA+TGG | + | chr6_4:11000503-11000522 | Msa0976800:intron | 40.0% |
| !! | GTTTCATTGGTTTGGATGGA+TGG | + | chr6_4:11000507-11000526 | Msa0976800:intron | 40.0% |
| !! | TGGATTGGTGACGAGTTTAA+TGG | - | chr6_4:11000601-11000620 | None:intergenic | 40.0% |
| CTAATCAACGAGTGCATGTT+TGG | - | chr6_4:11000621-11000640 | None:intergenic | 40.0% | |
| TGTTCGTATTGTAGGTGATG+TGG | + | chr6_4:11000692-11000711 | Msa0976800:intron | 40.0% | |
| ATTGTAGGTGATGTGGTTTC+TGG | + | chr6_4:11000699-11000718 | Msa0976800:intron | 40.0% | |
| !! | GTTTCTGGAACAACTTCAAG+TGG | + | chr6_4:11000714-11000733 | Msa0976800:CDS | 40.0% |
| TCAAGTGGAATTCACCATTC+TGG | + | chr6_4:11000729-11000748 | Msa0976800:CDS | 40.0% | |
| ATCCTTCAAGGATACCAGAA+TGG | - | chr6_4:11000746-11000765 | None:intergenic | 40.0% | |
| ATTCTGGTATCCTTGAAGGA+TGG | + | chr6_4:11000745-11000764 | Msa0976800:CDS | 40.0% | |
| TATTGGTATAGGCAGTGTAC+AGG | - | chr6_4:11001216-11001235 | None:intergenic | 40.0% | |
| TACACTGCCTATACCAATAC+CGG | + | chr6_4:11001217-11001236 | Msa0976800:intron | 40.0% | |
| !! | ATGAGTACCGGTATTGGTAT+AGG | - | chr6_4:11001227-11001246 | None:intergenic | 40.0% |
| CAATGAATCTGCAACAACCA+CGG | - | chr6_4:11001253-11001272 | None:intergenic | 40.0% | |
| ! | GTTTTCCTTATCATTGCCGT+AGG | + | chr6_4:11001309-11001328 | Msa0976800:CDS | 40.0% |
| GCTTACATCTGTCACTACAA+TGG | + | chr6_4:11001447-11001466 | Msa0976800:CDS | 40.0% | |
| ! | TTACCTGCATTTTGCGGTTT+AGG | + | chr6_4:11001679-11001698 | Msa0976800:intron | 40.0% |
| !! | TCCCAAGTACTGATAAACAC+TGG | + | chr6_4:11001741-11001760 | Msa0976800:intron | 40.0% |
| GCCAGTGTTTATCAGTACTT+GGG | - | chr6_4:11001745-11001764 | None:intergenic | 40.0% | |
| TGCCAGTGTTTATCAGTACT+TGG | - | chr6_4:11001746-11001765 | None:intergenic | 40.0% | |
| TGATAAACACTGGCATCTAG+CGG | + | chr6_4:11001751-11001770 | Msa0976800:intron | 40.0% | |
| !! | AAGTACTGAATAGCATAGGG+CGG | - | chr6_4:11001825-11001844 | None:intergenic | 40.0% |
| ATGTTGTCAATCTCGGATGA+TGG | - | chr6_4:11001888-11001907 | None:intergenic | 40.0% | |
| TCATCCGAGATTGACAACAT+TGG | + | chr6_4:11001888-11001907 | Msa0976800:intron | 40.0% | |
| TGCGTCATAGATGTATAACC+TGG | + | chr6_4:11001949-11001968 | Msa0976800:intron | 40.0% | |
| GTCATAGATGTATAACCTGG+TGG | + | chr6_4:11001952-11001971 | Msa0976800:intron | 40.0% | |
| ! | TTCTTTGGGTTCCTCCTATT+CGG | + | chr6_4:11002101-11002120 | Msa0976800:CDS | 40.0% |
| TCATTGAGTGCAGAACCAAA+AGG | - | chr6_4:11002179-11002198 | None:intergenic | 40.0% | |
| GCATTGAGGGTTAACATAGA+TGG | + | chr6_4:11002257-11002276 | Msa0976800:CDS | 40.0% | |
| CGGAAGTTATCAACAACCAA+TGG | - | chr6_4:11002308-11002327 | None:intergenic | 40.0% | |
| TCGATTACTATTGCGCTTGT+CGG | + | chr6_4:11002335-11002354 | Msa0976800:CDS | 40.0% | |
| CTTGTCGGCATTATCTACAT+GGG | + | chr6_4:11002350-11002369 | Msa0976800:CDS | 40.0% | |
| TGGAAAAGATCCCAAATGCT+AGG | - | chr6_4:11002389-11002408 | None:intergenic | 40.0% | |
| ! | GGACAAAATCTTGTCCGTTT+TGG | - | chr6_4:11002720-11002739 | None:intergenic | 40.0% |
| GTCCGTCTTTATGATAGTTC+TGG | + | chr6_4:11002736-11002755 | Msa0976800:CDS | 40.0% | |
| AGCATCACTGTATATAGCCA+CGG | - | chr6_4:11002777-11002796 | None:intergenic | 40.0% | |
| TTGAATGTGCTCTATTTCCC+TGG | + | chr6_4:11003168-11003187 | Msa0976800:three_prime_UTR | 40.0% | |
| GCACTTGTCTGCATTATCAA+TGG | + | chr6_4:11003229-11003248 | Msa0976800:three_prime_UTR | 40.0% | |
| GTCTGCATTATCAATGGCTA+AGG | + | chr6_4:11003235-11003254 | Msa0976800:three_prime_UTR | 40.0% | |
| AAGGAAGAACAAGGAGGTTG+TGG | + | chr6_4:10999936-10999955 | Msa0976800:CDS | 45.0% | |
| AGGAAGAACAAGGAGGTTGT+GGG | + | chr6_4:10999937-10999956 | Msa0976800:CDS | 45.0% | |
| !! | AGTTATCGGTGCTGGAATCA+TGG | + | chr6_4:11000062-11000081 | Msa0976800:CDS | 45.0% |
| !! | GTTATCGGTGCTGGAATCAT+GGG | + | chr6_4:11000063-11000082 | Msa0976800:CDS | 45.0% |
| GCAGGGAATCTTTCTTCCTA+TGG | + | chr6_4:11000195-11000214 | Msa0976800:CDS | 45.0% | |
| ATCCCCCATAAGACTTCCAT+AGG | - | chr6_4:11000214-11000233 | None:intergenic | 45.0% | |
| CAACGAGTGCATGTTTGGAT+TGG | - | chr6_4:11000616-11000635 | None:intergenic | 45.0% | |
| CACCATTCTGGTATCCTTGA+AGG | + | chr6_4:11000741-11000760 | Msa0976800:CDS | 45.0% | |
| GGTATCCTTGAAGGATGGTT+TGG | + | chr6_4:11000750-11000769 | Msa0976800:CDS | 45.0% | |
| !! | AAGGATGGTTTGGTGTCCAT+TGG | + | chr6_4:11000760-11000779 | Msa0976800:CDS | 45.0% |
| AGATCCCTACGGCAATGATA+AGG | - | chr6_4:11001317-11001336 | None:intergenic | 45.0% | |
| ATTCACTGTAGTTCCTGTGC+TGG | + | chr6_4:11001419-11001438 | Msa0976800:CDS | 45.0% | |
| AAGCCTAAACCGCAAAATGC+AGG | - | chr6_4:11001685-11001704 | None:intergenic | 45.0% | |
| ! | TGCATTTTGCGGTTTAGGCT+TGG | + | chr6_4:11001684-11001703 | Msa0976800:intron | 45.0% |
| ! | TTAGGCTTGGTTGCTTGATG+TGG | + | chr6_4:11001697-11001716 | Msa0976800:intron | 45.0% |
| ACATCTATGACGCAAACAGG+TGG | - | chr6_4:11001943-11001962 | None:intergenic | 45.0% | |
| !! | TTTTAGCTATGCTGCGCATC+TGG | + | chr6_4:11002208-11002227 | Msa0976800:CDS | 45.0% |
| TTCCTCATCAAGAAGGCCAT+TGG | + | chr6_4:11002289-11002308 | Msa0976800:CDS | 45.0% | |
| AACCAATGGCCTTCTTGATG+AGG | - | chr6_4:11002294-11002313 | None:intergenic | 45.0% | |
| GCTTGTCGGCATTATCTACA+TGG | + | chr6_4:11002349-11002368 | Msa0976800:CDS | 45.0% | |
| ! | TGGGATCTTTTCCAGTTCAC+TGG | + | chr6_4:11002395-11002414 | Msa0976800:CDS | 45.0% |
| ! | GCAACTGCTGCTGTTTGTTT+AGG | + | chr6_4:11002419-11002438 | Msa0976800:CDS | 45.0% |
| ! | ATTTTCTCCATAGGGTTCGG+TGG | + | chr6_4:11002919-11002938 | Msa0976800:intron | 45.0% |
| !! | TTTTCTCCATAGGGTTCGGT+GGG | + | chr6_4:11002920-11002939 | Msa0976800:intron | 45.0% |
| TCGACAACAGTTATCGGTGC+TGG | + | chr6_4:11000054-11000073 | Msa0976800:CDS | 50.0% | |
| CCTGCCTGTGTGAAGAAGTT+GGG | + | chr6_4:11000090-11000109 | Msa0976800:CDS | 50.0% | |
| CTGCCTGTGTGAAGAAGTTG+GGG | + | chr6_4:11000091-11000110 | Msa0976800:CDS | 50.0% | |
| CATCCCCAACTTCTTCACAC+AGG | - | chr6_4:11000097-11000116 | None:intergenic | 50.0% | |
| CTGTGTGAAGAAGTTGGGGA+TGG | + | chr6_4:11000095-11000114 | Msa0976800:CDS | 50.0% | |
| !! | ATGCTCAGGTTTTCAAGGGC+AGG | + | chr6_4:11000177-11000196 | Msa0976800:CDS | 50.0% |
| !! | TGCTCAGGTTTTCAAGGGCA+GGG | + | chr6_4:11000178-11000197 | Msa0976800:CDS | 50.0% |
| ! | AGTCTTATGGGGGATGCCTT+TGG | + | chr6_4:11000219-11000238 | Msa0976800:CDS | 50.0% |
| GTCTTATGGGGGATGCCTTT+GGG | + | chr6_4:11000220-11000239 | Msa0976800:CDS | 50.0% | |
| GTTTGGATGGATGGTCCGTT+TGG | + | chr6_4:11000516-11000535 | Msa0976800:intron | 50.0% | |
| GGACACCAAACCATCCTTCA+AGG | - | chr6_4:11000758-11000777 | None:intergenic | 50.0% | |
| !! | GATGGTTTGGTGTCCATTGG+TGG | + | chr6_4:11000763-11000782 | Msa0976800:CDS | 50.0% |
| !! | TTTGGTGTCCATTGGTGGAC+TGG | + | chr6_4:11000768-11000787 | Msa0976800:CDS | 50.0% |
| !! | TTGGTGTCCATTGGTGGACT+GGG | + | chr6_4:11000769-11000788 | Msa0976800:CDS | 50.0% |
| !! | CGGAGAATGAGTACCGGTAT+TGG | - | chr6_4:11001233-11001252 | None:intergenic | 50.0% |
| ATACCGGTACTCATTCTCCG+TGG | + | chr6_4:11001233-11001252 | Msa0976800:intron | 50.0% | |
| CAACCACGGAGAATGAGTAC+CGG | - | chr6_4:11001239-11001258 | None:intergenic | 50.0% | |
| GTAATGACCGGGAAGAGTCT+GGG | - | chr6_4:11001375-11001394 | None:intergenic | 50.0% | |
| TGTAATGACCGGGAAGAGTC+TGG | - | chr6_4:11001376-11001395 | None:intergenic | 50.0% | |
| AAGCTGCGTCTGTAATGACC+GGG | - | chr6_4:11001386-11001405 | None:intergenic | 50.0% | |
| GAAGCTGCGTCTGTAATGAC+CGG | - | chr6_4:11001387-11001406 | None:intergenic | 50.0% | |
| ATGTAAGCAGTCACCAGCAC+AGG | - | chr6_4:11001435-11001454 | None:intergenic | 50.0% | |
| GTGTACCAGTCGTACGAACT+GGG | + | chr6_4:11001628-11001647 | Msa0976800:intron | 50.0% | |
| ATGAACTGGAGGACTCCTCA+TGG | + | chr6_4:11002018-11002037 | Msa0976800:CDS | 50.0% | |
| !! | AGAGAGTATCGTCGCCGAAT+AGG | - | chr6_4:11002118-11002137 | None:intergenic | 50.0% |
| TACTTCAGAGTGACTGCAGC+TGG | - | chr6_4:11002455-11002474 | None:intergenic | 50.0% | |
| AATCAACCCACCGAACCCTA+TGG | - | chr6_4:11002929-11002948 | None:intergenic | 50.0% | |
| GCCTGCCTGTGTGAAGAAGT+TGG | + | chr6_4:11000089-11000108 | Msa0976800:CDS | 55.0% | |
| CCCAACTTCTTCACACAGGC+AGG | - | chr6_4:11000093-11000112 | None:intergenic | 55.0% | |
| AAGAAGTTGGGGATGGTGCC+TGG | + | chr6_4:11000102-11000121 | Msa0976800:CDS | 55.0% | |
| ! | GGGGATGCCTTTGGGAGATA+TGG | + | chr6_4:11000228-11000247 | Msa0976800:CDS | 55.0% |
| ATGTACGCCCAGTCCACCAA+TGG | - | chr6_4:11000779-11000798 | None:intergenic | 55.0% | |
| CGTGTACCAGTCGTACGAAC+TGG | + | chr6_4:11001627-11001646 | Msa0976800:intron | 55.0% | |
| GTGTTCCCAGTTCGTACGAC+TGG | - | chr6_4:11001636-11001655 | None:intergenic | 55.0% | |
| GCGCACACAATAGAACCACC+AGG | - | chr6_4:11001970-11001989 | None:intergenic | 55.0% | |
| GAGGACTCCTCATGGATGCA+TGG | + | chr6_4:11002026-11002045 | Msa0976800:CDS | 55.0% | |
| ! | GAGTATCGTCGCCGAATAGG+AGG | - | chr6_4:11002115-11002134 | None:intergenic | 55.0% |
| CAGCAGTTGCTCCAGTGAAC+TGG | - | chr6_4:11002409-11002428 | None:intergenic | 55.0% | |
| ! | GGCAGTCTTGTCAAATGCCG+TGG | + | chr6_4:11002757-11002776 | Msa0976800:CDS | 55.0% |
| TGGGATGCCCAGACTCTTCC+CGG | + | chr6_4:11001365-11001384 | Msa0976800:CDS | 60.0% | |
| CACGACGCCATGCATCCATG+AGG | - | chr6_4:11002036-11002055 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 10999624 | 11003291 | 10999624 | ID=Msa0976800;Name=Msa0976800 |
| chr6_4 | mRNA | 10999624 | 11003291 | 10999624 | ID=Msa0976800-mRNA-1;Parent=Msa0976800;Name=Msa0976800-mRNA-1;_AED=0.12;_eAED=0.12;_QI=66|1|1|1|0.66|0.42|7|422|464 |
| chr6_4 | exon | 10999624 | 10999639 | 10999624 | ID=Msa0976800-mRNA-1:exon:3977;Parent=Msa0976800-mRNA-1 |
| chr6_4 | exon | 10999854 | 11000321 | 10999854 | ID=Msa0976800-mRNA-1:exon:3978;Parent=Msa0976800-mRNA-1 |
| chr6_4 | exon | 11000706 | 11000858 | 11000706 | ID=Msa0976800-mRNA-1:exon:3979;Parent=Msa0976800-mRNA-1 |
| chr6_4 | exon | 11001265 | 11001468 | 11001265 | ID=Msa0976800-mRNA-1:exon:3980;Parent=Msa0976800-mRNA-1 |
| chr6_4 | exon | 11002003 | 11002471 | 11002003 | ID=Msa0976800-mRNA-1:exon:3981;Parent=Msa0976800-mRNA-1 |
| chr6_4 | exon | 11002697 | 11002937 | 11002697 | ID=Msa0976800-mRNA-1:exon:3982;Parent=Msa0976800-mRNA-1 |
| chr6_4 | exon | 11002960 | 11003291 | 11002960 | ID=Msa0976800-mRNA-1:exon:3983;Parent=Msa0976800-mRNA-1 |
| chr6_4 | five_prime_UTR | 10999624 | 10999639 | 10999624 | ID=Msa0976800-mRNA-1:five_prime_utr;Parent=Msa0976800-mRNA-1 |
| chr6_4 | five_prime_UTR | 10999854 | 10999903 | 10999854 | ID=Msa0976800-mRNA-1:five_prime_utr;Parent=Msa0976800-mRNA-1 |
| chr6_4 | CDS | 10999904 | 11000321 | 10999904 | ID=Msa0976800-mRNA-1:cds;Parent=Msa0976800-mRNA-1 |
| chr6_4 | CDS | 11000706 | 11000858 | 11000706 | ID=Msa0976800-mRNA-1:cds;Parent=Msa0976800-mRNA-1 |
| chr6_4 | CDS | 11001265 | 11001468 | 11001265 | ID=Msa0976800-mRNA-1:cds;Parent=Msa0976800-mRNA-1 |
| chr6_4 | CDS | 11002003 | 11002471 | 11002003 | ID=Msa0976800-mRNA-1:cds;Parent=Msa0976800-mRNA-1 |
| chr6_4 | CDS | 11002697 | 11002847 | 11002697 | ID=Msa0976800-mRNA-1:cds;Parent=Msa0976800-mRNA-1 |
| chr6_4 | three_prime_UTR | 11002848 | 11002937 | 11002848 | ID=Msa0976800-mRNA-1:three_prime_utr;Parent=Msa0976800-mRNA-1 |
| chr6_4 | three_prime_UTR | 11002960 | 11003291 | 11002960 | ID=Msa0976800-mRNA-1:three_prime_utr;Parent=Msa0976800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
