AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0723120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0723120 MtrunA17_Chr5g0413951 92.275 233 13 2 7 234 118 350 2.01e-141 399
Msa0723120 MtrunA17_Chr5g0413941 85.408 233 29 2 7 234 118 350 7.48e-133 378
Msa0723120 MtrunA17_Chr5g0413931 71.552 232 61 2 7 233 117 348 1.39e-114 331
Msa0723120 MtrunA17_Chr5g0413921 72.368 228 55 2 7 230 118 341 2.89e-112 325
Msa0723120 MtrunA17_Chr4g0059311 43.478 230 123 2 7 229 123 352 1.63e-53 176
Msa0723120 MtrunA17_Chr7g0227921 41.026 234 130 3 7 233 122 354 1.18e-48 163
Msa0723120 MtrunA17_Chr3g0126101 38.362 232 137 3 7 234 116 345 1.95e-46 157
Msa0723120 MtrunA17_Chr6g0451211 40.948 232 124 5 8 230 126 353 1.04e-44 153
Msa0723120 MtrunA17_Chr6g0451191 37.281 228 131 4 10 229 1 224 3.05e-44 148
Msa0723120 MtrunA17_Chr5g0413961 40.343 233 125 5 7 230 124 351 3.97e-44 151
Msa0723120 MtrunA17_Chr6g0451201 41.525 236 126 4 6 233 120 351 4.59e-44 151
Msa0723120 MtrunA17_Chr1g0150151 35.270 241 127 4 7 227 123 354 1.18e-43 150
Msa0723120 MtrunA17_Chr6g0451251 43.154 241 109 6 8 231 125 354 1.24e-41 145
Msa0723120 MtrunA17_Chr7g0255561 37.209 215 121 4 7 210 125 336 4.77e-39 139
Msa0723120 MtrunA17_Chr7g0255581 37.209 215 121 4 7 210 125 336 4.77e-39 139
Msa0723120 MtrunA17_Chr6g0451171 38.261 230 130 4 8 229 124 349 5.26e-38 135
Msa0723120 MtrunA17_Chr6g0451261 39.286 196 111 4 1 191 118 310 9.64e-38 139
Msa0723120 MtrunA17_Chr3g0114731 35.455 220 136 3 7 222 129 346 1.04e-34 127
Msa0723120 MtrunA17_Chr3g0126091 33.333 219 137 4 7 217 125 342 1.38e-34 126
Msa0723120 MtrunA17_Chr3g0081511 33.482 224 130 5 1 211 121 338 1.72e-34 127
Msa0723120 MtrunA17_Chr3g0081421 32.618 233 141 7 4 226 127 353 1.03e-33 125
Msa0723120 MtrunA17_Chr6g0483401 30.932 236 145 6 9 233 123 351 1.27e-33 124
Msa0723120 MtrunA17_Chr8g0354121 31.390 223 139 6 1 211 117 337 2.26e-31 119
Msa0723120 MtrunA17_Chr3g0114691 30.435 230 154 2 8 231 132 361 5.63e-31 117
Msa0723120 MtrunA17_Chr8g0383731 32.258 217 133 3 7 211 116 330 7.14e-31 116
Msa0723120 MtrunA17_Chr2g0290611 32.536 209 135 2 8 210 124 332 7.76e-30 114
Msa0723120 MtrunA17_Chr1g0160171 32.075 212 140 1 7 214 127 338 1.31e-29 114
Msa0723120 MtrunA17_Chr3g0129601 31.111 225 147 3 7 223 140 364 3.69e-29 112
Msa0723120 MtrunA17_Chr1g0164831 30.275 218 142 3 10 217 115 332 7.97e-29 110
Msa0723120 MtrunA17_Chr4g0073241 31.250 240 148 3 7 231 122 359 8.26e-29 111
Msa0723120 MtrunA17_Chr4g0050881 32.400 250 124 8 8 228 120 353 3.34e-28 109
Msa0723120 MtrunA17_Chr1g0186571 31.019 216 128 4 8 211 125 331 9.71e-28 108
Msa0723120 MtrunA17_Chr2g0278551 30.631 222 146 3 8 223 124 343 1.30e-27 108
Msa0723120 MtrunA17_Chr1g0186641 30.516 213 135 5 7 211 124 331 4.32e-27 106
Msa0723120 MtrunA17_Chr1g0184221 27.778 216 147 3 8 218 142 353 1.05e-26 105
Msa0723120 MtrunA17_Chr3g0114711 27.675 271 150 6 7 234 125 392 1.93e-26 105
Msa0723120 MtrunA17_Chr1g0160181 31.507 219 129 5 7 211 129 340 2.30e-26 105
Msa0723120 MtrunA17_Chr3g0142131 28.631 241 152 5 7 229 131 369 2.86e-26 105
Msa0723120 MtrunA17_Chr4g0051021 30.357 224 142 5 8 221 126 345 7.37e-26 103
Msa0723120 MtrunA17_Chr1g0171301 31.925 213 132 5 9 212 129 337 7.66e-26 103
Msa0723120 MtrunA17_Chr1g0155761 27.083 240 151 4 7 223 132 370 8.24e-26 103
Msa0723120 MtrunA17_Chr7g0271561 29.767 215 140 3 7 210 118 332 8.27e-26 103
Msa0723120 MtrunA17_Chr2g0278561 28.571 231 140 4 10 225 129 349 8.72e-26 103
Msa0723120 MtrunA17_Chr4g0050891 31.401 207 133 3 8 205 125 331 1.25e-25 102
Msa0723120 MtrunA17_Chr1g0160111 31.628 215 135 4 7 210 118 331 1.44e-25 102
Msa0723120 MtrunA17_Chr7g0263101 30.876 217 139 5 7 215 124 337 1.76e-25 102
Msa0723120 MtrunA17_Chr1g0186611 28.302 212 139 5 9 212 129 335 3.01e-25 101
Msa0723120 MtrunA17_Chr1g0182291 28.696 230 153 5 7 229 126 351 3.19e-25 101
Msa0723120 MtrunA17_Chr2g0284261 28.708 209 139 3 8 210 120 324 4.11e-25 101
Msa0723120 MtrunA17_Chr8g0334761 29.808 208 138 3 9 210 124 329 4.24e-25 101
Msa0723120 MtrunA17_Chr2g0310441 28.641 206 140 3 10 210 126 329 4.42e-25 101
Msa0723120 MtrunA17_Chr6g0463971 30.806 211 139 3 7 210 126 336 6.68e-25 100
Msa0723120 MtrunA17_Chr4g0050941 30.000 250 146 7 9 231 126 373 1.09e-24 100
Msa0723120 MtrunA17_Chr2g0332001 30.769 247 143 6 8 234 150 388 1.49e-24 100
Msa0723120 MtrunA17_Chr5g0404811 28.111 217 144 4 9 216 6 219 1.63e-24 97.8
Msa0723120 MtrunA17_Chr1g0186601 28.821 229 142 4 9 225 129 348 5.65e-24 98.2
Msa0723120 MtrunA17_Chr1g0186561 31.280 211 133 4 9 211 129 335 6.99e-24 97.8
Msa0723120 MtrunA17_Chr8g0334751 27.350 234 157 4 10 231 126 358 1.20e-23 97.4
Msa0723120 MtrunA17_Chr3g0129571 28.829 222 146 4 7 218 120 339 2.74e-23 96.3
Msa0723120 MtrunA17_Chr6g0451241 50.000 94 44 1 139 229 8 101 4.68e-23 90.1
Msa0723120 MtrunA17_Chr5g0408031 27.511 229 144 5 7 214 121 348 2.36e-22 94.0
Msa0723120 MtrunA17_Chr4g0050931 28.571 217 140 6 7 210 84 298 2.42e-22 93.2
Msa0723120 MtrunA17_Chr5g0408041 29.555 247 152 6 7 231 122 368 4.61e-22 93.2
Msa0723120 MtrunA17_Chr2g0278021 29.333 225 148 3 10 223 1 225 6.03e-22 91.7
Msa0723120 MtrunA17_Chr8g0369841 27.706 231 149 4 11 223 124 354 9.00e-22 92.4
Msa0723120 MtrunA17_Chr5g0407991 27.236 246 157 5 7 231 120 364 1.56e-21 91.7
Msa0723120 MtrunA17_Chr3g0129591 29.630 216 136 4 7 210 118 329 2.41e-21 90.9
Msa0723120 MtrunA17_Chr3g0114701 31.797 217 129 5 7 210 120 330 5.09e-21 90.5
Msa0723120 MtrunA17_Chr8g0334771 28.972 214 144 4 10 217 125 336 5.20e-21 90.1
Msa0723120 MtrunA17_Chr5g0407971 27.193 228 144 6 7 214 122 347 7.25e-21 90.1
Msa0723120 MtrunA17_Chr2g0278541 26.291 213 143 3 11 210 127 338 9.07e-21 89.7
Msa0723120 MtrunA17_Chr3g0084091 27.907 215 148 3 1 210 37 249 3.37e-20 87.0
Msa0723120 MtrunA17_Chr5g0408001 27.049 244 152 6 7 227 121 361 9.15e-20 87.0
Msa0723120 MtrunA17_Chr5g0441761 24.664 223 159 2 7 225 125 342 2.78e-19 85.1
Msa0723120 MtrunA17_Chr5g0428881 27.488 211 146 3 7 210 129 339 1.30e-18 83.6
Msa0723120 MtrunA17_Chr8g0334721 31.655 139 79 2 107 229 2 140 2.56e-18 79.0
Msa0723120 MtrunA17_Chr5g0429001 26.577 222 146 4 1 210 58 274 1.87e-17 79.7
Msa0723120 MtrunA17_Chr3g0129581 27.570 214 143 4 7 210 118 329 9.62e-17 78.2
Msa0723120 MtrunA17_Chr5g0399281 26.840 231 156 7 8 227 120 348 2.35e-15 73.9
Msa0723120 MtrunA17_Chr4g0051001 28.877 187 126 3 9 188 144 330 1.58e-14 71.6
Msa0723120 MtrunA17_Chr4g0056081 25.114 219 156 5 7 217 126 344 2.32e-14 71.2
Msa0723120 MtrunA17_Chr1g0177231 29.213 89 63 0 129 217 19 107 6.94e-14 66.2
Msa0723120 MtrunA17_Chr1g0211801 32.061 131 88 1 8 137 121 251 7.78e-14 68.9
Msa0723120 MtrunA17_Chr1g0172891 32.432 74 50 0 138 211 6 79 9.04e-14 65.9
Msa0723120 MtrunA17_Chr1g0177221 28.058 139 98 2 7 144 129 266 3.60e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0723120 AT3G28050.1 41.200 250 117 7 7 233 122 364 9.47e-54 177
Msa0723120 AT5G40230.1 40.000 240 131 4 3 233 127 362 9.39e-51 169
Msa0723120 AT5G40240.1 39.831 236 125 4 3 227 126 355 1.61e-50 169
Msa0723120 AT5G40240.3 39.831 236 125 4 3 227 126 355 1.61e-50 169
Msa0723120 AT5G40240.2 39.831 236 125 4 3 227 140 369 3.14e-50 168
Msa0723120 AT3G28070.2 38.430 242 124 6 7 233 35 266 1.57e-44 150
Msa0723120 AT3G28080.5 35.537 242 134 4 6 233 34 267 6.86e-44 149
Msa0723120 AT3G28080.7 35.537 242 134 4 6 233 34 267 6.86e-44 149
Msa0723120 AT3G28080.8 35.537 242 134 4 6 233 34 267 6.86e-44 149
Msa0723120 AT3G28080.6 35.537 242 134 4 6 233 34 267 6.86e-44 149
Msa0723120 AT3G28070.1 38.430 242 124 6 7 233 127 358 1.39e-43 150
Msa0723120 AT3G28080.2 35.537 242 134 4 6 233 115 348 6.38e-43 148
Msa0723120 AT3G28080.1 35.537 242 134 4 6 233 123 356 8.54e-43 148
Msa0723120 AT5G40210.1 39.130 230 117 4 7 229 123 336 1.32e-42 147
Msa0723120 AT3G28070.5 37.657 239 124 6 10 233 1 229 3.34e-42 143
Msa0723120 AT3G28080.9 34.874 238 133 4 10 233 1 230 9.97e-42 142
Msa0723120 AT3G28100.1 37.447 235 129 4 7 229 124 352 1.49e-40 142
Msa0723120 AT4G15540.1 42.925 212 107 3 8 215 128 329 2.45e-40 142
Msa0723120 AT4G15540.2 42.925 212 107 3 8 215 128 329 2.45e-40 142
Msa0723120 AT3G28130.5 36.325 234 139 5 7 233 37 267 4.14e-39 136
Msa0723120 AT3G28130.1 36.325 234 139 5 7 233 37 267 4.14e-39 136
Msa0723120 AT3G28130.2 36.325 234 139 5 7 233 123 353 2.81e-38 136
Msa0723120 AT3G28130.3 35.498 231 139 5 10 233 1 228 6.23e-37 129
Msa0723120 AT4G08300.1 31.915 235 152 4 7 234 121 354 1.86e-34 127
Msa0723120 AT1G21890.1 31.416 226 138 4 7 217 121 344 5.71e-34 125
Msa0723120 AT2G39510.1 35.909 220 124 5 7 215 118 331 1.60e-33 124
Msa0723120 AT1G44800.1 32.227 211 135 4 7 211 121 329 7.01e-33 122
Msa0723120 AT3G28070.3 37.629 194 103 4 7 188 127 314 1.43e-32 120
Msa0723120 AT5G07050.1 32.273 220 137 4 7 214 128 347 1.39e-31 119
Msa0723120 AT3G18200.1 29.358 218 144 3 6 217 14 227 1.44e-30 114
Msa0723120 AT5G13670.1 28.505 214 144 4 6 211 117 329 1.85e-30 116
Msa0723120 AT4G28040.1 30.415 217 134 4 7 218 120 324 5.17e-30 114
Msa0723120 AT4G28040.5 30.415 217 134 4 7 218 120 324 5.17e-30 114
Msa0723120 AT4G28040.3 30.415 217 134 4 7 218 120 324 5.17e-30 114
Msa0723120 AT4G28040.4 30.415 217 134 4 7 218 120 324 5.17e-30 114
Msa0723120 AT4G28040.2 30.415 217 134 4 7 218 120 324 5.17e-30 114
Msa0723120 AT3G18200.2 30.942 223 134 6 6 217 144 357 1.67e-29 114
Msa0723120 AT3G30340.1 30.986 213 136 3 7 211 121 330 7.24e-29 112
Msa0723120 AT3G28080.4 31.092 238 96 3 6 233 34 213 7.37e-29 108
Msa0723120 AT3G28080.3 31.092 238 96 3 6 233 123 302 6.20e-28 108
Msa0723120 AT4G08290.1 28.390 236 159 4 7 233 123 357 1.31e-27 108
Msa0723120 AT1G09380.1 31.925 213 129 5 7 207 118 326 2.47e-27 107
Msa0723120 AT2G40900.1 29.817 218 141 4 7 217 121 333 5.45e-27 107
Msa0723120 AT1G70260.1 30.000 220 134 5 13 217 131 345 3.26e-26 104
Msa0723120 AT4G30420.1 29.268 205 139 3 11 210 116 319 4.54e-26 104
Msa0723120 AT4G30420.2 29.268 205 139 3 11 210 126 329 6.03e-26 104
Msa0723120 AT1G43650.1 29.524 210 141 3 7 212 117 323 3.56e-25 101
Msa0723120 AT2G37460.1 29.825 228 152 5 7 228 125 350 6.65e-25 101
Msa0723120 AT4G01440.5 26.728 217 155 1 7 219 12 228 8.10e-25 99.0
Msa0723120 AT4G01440.2 26.728 217 155 1 7 219 12 228 8.10e-25 99.0
Msa0723120 AT5G64700.1 26.577 222 152 2 7 217 118 339 4.30e-24 99.0
Msa0723120 AT4G01440.1 26.728 217 155 1 7 219 120 336 4.80e-24 99.0
Msa0723120 AT1G21890.2 31.472 197 118 4 7 188 121 315 4.94e-24 98.6
Msa0723120 AT1G75500.1 26.606 218 147 4 6 211 129 345 6.20e-23 96.3
Msa0723120 AT1G75500.2 26.606 218 147 4 6 211 129 345 6.20e-23 96.3
Msa0723120 AT1G25270.1 28.692 237 155 4 7 234 113 344 9.88e-23 95.1
Msa0723120 AT5G45370.1 29.032 217 141 3 11 223 134 341 1.08e-22 95.1
Msa0723120 AT5G45370.6 28.017 232 148 5 11 223 32 263 3.38e-22 92.4
Msa0723120 AT5G45370.5 28.017 232 148 5 11 223 32 263 3.38e-22 92.4
Msa0723120 AT5G45370.3 27.917 240 152 6 5 223 66 305 4.81e-22 92.8
Msa0723120 AT3G53210.2 26.201 229 149 4 10 224 66 288 7.09e-22 92.0
Msa0723120 AT5G45370.2 28.017 232 148 5 11 223 134 365 1.01e-21 92.8
Msa0723120 AT5G45370.4 28.017 232 148 5 11 223 134 365 1.01e-21 92.8
Msa0723120 AT3G53210.1 26.201 229 149 4 10 224 123 345 1.97e-21 91.7
Msa0723120 AT4G19185.2 26.016 246 159 4 11 233 57 302 2.78e-21 90.5
Msa0723120 AT3G45870.5 27.907 215 141 4 5 205 45 259 5.63e-21 89.7
Msa0723120 AT3G56620.1 28.846 208 134 4 7 207 121 321 5.92e-21 90.5
Msa0723120 AT4G19185.1 26.016 246 159 4 11 233 135 380 6.14e-21 90.5
Msa0723120 AT2G37450.3 29.310 232 157 3 7 233 26 255 1.24e-19 85.1
Msa0723120 AT5G47470.1 28.085 235 139 6 10 228 144 364 1.48e-19 86.7
Msa0723120 AT5G47470.2 28.085 235 139 6 10 228 172 392 1.59e-19 86.7
Msa0723120 AT1G68170.2 27.869 244 149 4 6 234 122 353 1.88e-19 86.3
Msa0723120 AT1G68170.1 27.869 244 149 4 6 234 112 343 2.04e-19 85.9
Msa0723120 AT4G01440.3 27.513 189 133 1 7 191 120 308 3.31e-19 85.1
Msa0723120 AT2G37450.2 29.310 232 157 3 7 233 98 327 3.51e-19 85.1
Msa0723120 AT1G01070.2 28.319 226 144 6 7 221 79 297 4.47e-19 84.7
Msa0723120 AT3G45870.1 27.700 213 140 4 7 205 122 334 6.08e-19 85.1
Msa0723120 AT1G01070.1 28.319 226 144 6 7 221 126 344 9.25e-19 84.3
Msa0723120 AT4G01430.1 25.991 227 156 6 7 223 119 343 1.53e-18 83.6
Msa0723120 AT5G47470.3 26.906 223 135 5 10 218 172 380 4.15e-18 82.4
Msa0723120 AT2G37450.1 28.824 170 116 2 69 233 119 288 4.20e-18 81.6
Msa0723120 AT3G28060.1 35.897 117 59 3 82 188 44 154 8.03e-17 75.5
Msa0723120 AT1G60050.1 24.762 210 146 3 13 211 133 341 4.45e-16 76.6
Msa0723120 AT4G01430.3 24.638 207 145 5 25 222 1 205 1.26e-15 73.6
Msa0723120 AT4G08290.2 30.405 148 99 2 7 151 123 269 4.62e-15 73.2
Msa0723120 AT1G11450.1 23.923 209 153 3 7 210 34 241 1.02e-14 71.6
Msa0723120 AT3G45870.6 26.396 197 131 4 6 188 46 242 1.06e-14 71.6
Msa0723120 AT3G45870.7 26.396 197 131 4 6 188 46 242 1.06e-14 71.6
Msa0723120 AT3G30340.2 33.333 147 89 3 7 149 121 262 1.39e-14 71.6
Msa0723120 AT1G11450.2 24.171 211 150 4 7 210 75 282 2.63e-14 71.2
Msa0723120 AT1G11450.5 24.171 211 150 4 7 210 82 289 2.82e-14 71.2
Msa0723120 AT1G11450.3 24.171 211 150 4 7 210 126 333 3.68e-14 71.2
Msa0723120 AT1G11460.1 22.967 209 156 2 7 210 126 334 7.02e-14 70.1
Msa0723120 AT3G45870.8 26.042 192 128 4 11 188 126 317 5.06e-13 67.8
Msa0723120 AT3G45870.2 27.703 148 104 2 61 205 36 183 6.07e-13 66.6
Msa0723120 AT3G28100.3 33.333 141 79 3 7 138 124 258 1.73e-12 65.5
Msa0723120 AT3G28130.4 31.343 134 89 2 7 137 123 256 1.11e-11 63.2
Msa0723120 AT4G01440.4 28.058 139 100 0 7 145 120 258 5.19e-11 61.6

Find 37 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAAATCAGATTGGATAAT+TGG 0.197562 5_1:+20744859 Msa0723120:CDS
ACTTATTGGTGCAGCATTAT+TGG 0.203191 5_1:+20746130 Msa0723120:intron
GTGTTTATCACTAGCTCTTC+TGG 0.211473 5_1:-20745344 None:intergenic
TCCAATCTGATTTCCCTAAA+AGG 0.218236 5_1:-20744852 None:intergenic
GGAGCTGCTATCATAGTTAT+TGG 0.234600 5_1:+20746151 Msa0723120:CDS
AGTGCAATGACCACTCTTAA+AGG 0.236929 5_1:-20745970 None:intergenic
GGCACAGTGGTCTCTATTGC+AGG 0.308068 5_1:+20744745 Msa0723120:CDS
AGCAGCCAGGCAAAAGTTAT+TGG 0.314638 5_1:+20744724 Msa0723120:CDS
TTGAACATAGCTACATATAT+TGG 0.334507 5_1:-20745946 None:intergenic
AAACAAAAGCATGGATATAT+AGG 0.382758 5_1:+20746261 Msa0723120:CDS
TTGGGAGACAATCTTTATCT+TGG 0.387204 5_1:+20746012 Msa0723120:CDS
ATATACAGACTTGGATTGTC+AGG 0.424821 5_1:+20745315 Msa0723120:intron
ACAGATAGCAACTCTTTATC+AGG 0.429389 5_1:-20745449 None:intergenic
CAGAGGGAAATTCAAATGCT+TGG 0.454003 5_1:+20745417 Msa0723120:CDS
TTAATGGCATCATTAATCAA+TGG 0.480091 5_1:-20744799 None:intergenic
TACCACAAAACAGCAACAAA+TGG 0.500109 5_1:-20745366 None:intergenic
AGTGGTCATTGCACTTAGCA+TGG 0.527230 5_1:+20745978 Msa0723120:CDS
AATATAGAAATGGGAGCAAG+TGG 0.531385 5_1:+20744823 Msa0723120:CDS
GAGACAATCTTTATCTTGGA+AGG 0.532255 5_1:+20746016 Msa0723120:CDS
GTGGTCATTGCACTTAGCAT+GGG 0.547313 5_1:+20745979 Msa0723120:CDS
CTCTGCAATGAGAGCTACAA+TGG 0.554415 5_1:-20745399 None:intergenic
TCTATTGTCAAACAAAAGCA+TGG 0.559816 5_1:+20746252 Msa0723120:CDS
ACATGGGCATGTCGTAAGAA+AGG 0.565963 5_1:+20745922 Msa0723120:CDS
GCACAGTGGTCTCTATTGCA+GGG 0.571242 5_1:+20744746 Msa0723120:CDS
CACAGTGGTCTCTATTGCAG+GGG 0.584216 5_1:+20744747 Msa0723120:CDS
CAAAAGCATGGATATATAGG+AGG 0.592000 5_1:+20746264 Msa0723120:exon
TATGTTCAAACCTTTAAGAG+TGG 0.597273 5_1:+20745960 Msa0723120:CDS
AGCATGGATATATAGGAGGA+TGG 0.603612 5_1:+20746268 Msa0723120:exon
TGAAGAATGTTATACTCACA+TGG 0.605157 5_1:+20745905 Msa0723120:CDS
ATTGTAGCTCTCATTGCAGA+GGG 0.608307 5_1:+20745401 Msa0723120:CDS
GATATGGGCACAAGCTCAAG+AGG 0.617122 5_1:+20746186 Msa0723120:CDS
TGGTCATTGCACTTAGCATG+GGG 0.620952 5_1:+20745980 Msa0723120:CDS
TATACAGACTTGGATTGTCA+GGG 0.626722 5_1:+20745316 Msa0723120:intron
CATTGTAGCTCTCATTGCAG+AGG 0.632723 5_1:+20745400 Msa0723120:CDS
GAAGAATGTTATACTCACAT+GGG 0.641061 5_1:+20745906 Msa0723120:CDS
GGCAAAAGTTATTGGCACAG+TGG 0.705210 5_1:+20744732 Msa0723120:CDS
GGTCATTGCACTTAGCATGG+GGG 0.733530 5_1:+20745981 Msa0723120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTTTATAATTAAAAA+TGG + chr5_1:20746103-20746122 Msa0723120:intron 0.0%
!!! TTAATTTTTATAATTAAAAA+TGG + chr5_1:20746103-20746122 Msa0723120:intron 0.0%
!!! ATAATATTTCTAAAACTAAA+AGG - chr5_1:20745796-20745815 None:intergenic 10.0%
!! TAAAAATTAATCAATAATCT+TGG - chr5_1:20746093-20746112 None:intergenic 10.0%
!! GAAAAAAAATTGTATATTAA+TGG + chr5_1:20746395-20746414 Msa0723120:three_prime_UTR 10.0%
!!! ATAATATTTCTAAAACTAAA+AGG - chr5_1:20745796-20745815 None:intergenic 10.0%
!! TAAAAATTAATCAATAATCT+TGG - chr5_1:20746093-20746112 None:intergenic 10.0%
!! GAAAAAAAATTGTATATTAA+TGG + chr5_1:20746395-20746414 Msa0723120:three_prime_UTR 10.0%
!!! GATTTGTTATTCTTATTATT+AGG + chr5_1:20745492-20745511 Msa0723120:intron 15.0%
!!! ATAATTTTTCACAAATTTGT+TGG - chr5_1:20746054-20746073 None:intergenic 15.0%
!!! TTAAAAATGGTTTAACTTAT+TGG + chr5_1:20746116-20746135 Msa0723120:intron 15.0%
!!! CATATATTTTCTTATCATAA+AGG + chr5_1:20746373-20746392 Msa0723120:three_prime_UTR 15.0%
!!! GATTTGTTATTCTTATTATT+AGG + chr5_1:20745492-20745511 Msa0723120:intron 15.0%
!!! ATAATTTTTCACAAATTTGT+TGG - chr5_1:20746054-20746073 None:intergenic 15.0%
!!! TTAAAAATGGTTTAACTTAT+TGG + chr5_1:20746116-20746135 Msa0723120:intron 15.0%
!!! CATATATTTTCTTATCATAA+AGG + chr5_1:20746373-20746392 Msa0723120:three_prime_UTR 15.0%
!!! TATTTTTTCTTGTATTTGCA+AGG - chr5_1:20744643-20744662 None:intergenic 20.0%
!!! TTAGTTGTGACATTTTATAA+AGG + chr5_1:20744772-20744791 Msa0723120:CDS 20.0%
!!! TAGTTGTGACATTTTATAAA+GGG + chr5_1:20744773-20744792 Msa0723120:CDS 20.0%
!! TGCCATTAAAAATATAGAAA+TGG + chr5_1:20744813-20744832 Msa0723120:CDS 20.0%
!! GCCATTAAAAATATAGAAAT+GGG + chr5_1:20744814-20744833 Msa0723120:CDS 20.0%
!!! TCCCATTTCTATATTTTTAA+TGG - chr5_1:20744818-20744837 None:intergenic 20.0%
!!! ATATTAATAGTTTGTTTACC+TGG - chr5_1:20744936-20744955 None:intergenic 20.0%
!!! AATTGTAGCTGTTTAAATTT+TGG + chr5_1:20745817-20745836 Msa0723120:intron 20.0%
!!! TATTTTTTCTTGTATTTGCA+AGG - chr5_1:20744643-20744662 None:intergenic 20.0%
!!! TTAGTTGTGACATTTTATAA+AGG + chr5_1:20744772-20744791 Msa0723120:CDS 20.0%
!!! TAGTTGTGACATTTTATAAA+GGG + chr5_1:20744773-20744792 Msa0723120:CDS 20.0%
!! TGCCATTAAAAATATAGAAA+TGG + chr5_1:20744813-20744832 Msa0723120:CDS 20.0%
!! GCCATTAAAAATATAGAAAT+GGG + chr5_1:20744814-20744833 Msa0723120:CDS 20.0%
!!! TCCCATTTCTATATTTTTAA+TGG - chr5_1:20744818-20744837 None:intergenic 20.0%
!!! ATATTAATAGTTTGTTTACC+TGG - chr5_1:20744936-20744955 None:intergenic 20.0%
!!! AATTGTAGCTGTTTAAATTT+TGG + chr5_1:20745817-20745836 Msa0723120:intron 20.0%
! TTAATGGCATCATTAATCAA+TGG - chr5_1:20744802-20744821 None:intergenic 25.0%
!! GATATGATAAAGCATGTTTT+CGG - chr5_1:20745259-20745278 None:intergenic 25.0%
!!! TTTTTTGTCAAGTAGTTTAG+TGG - chr5_1:20745668-20745687 None:intergenic 25.0%
!!! CTGTTTAAATTTTGGTTTTG+TGG + chr5_1:20745825-20745844 Msa0723120:intron 25.0%
! TGTGGTTATTCATTTAATCA+TGG + chr5_1:20745843-20745862 Msa0723120:intron 25.0%
! AGTTGCCTATAAATGATTAA+AGG - chr5_1:20745872-20745891 None:intergenic 25.0%
! TTGAACATAGCTACATATAT+TGG - chr5_1:20745949-20745968 None:intergenic 25.0%
!! AAACAAAAGCATGGATATAT+AGG + chr5_1:20746261-20746280 Msa0723120:CDS 25.0%
! TTAATGGCATCATTAATCAA+TGG - chr5_1:20744802-20744821 None:intergenic 25.0%
!! GATATGATAAAGCATGTTTT+CGG - chr5_1:20745259-20745278 None:intergenic 25.0%
!!! TTTTTTGTCAAGTAGTTTAG+TGG - chr5_1:20745668-20745687 None:intergenic 25.0%
!!! CTGTTTAAATTTTGGTTTTG+TGG + chr5_1:20745825-20745844 Msa0723120:intron 25.0%
! TGTGGTTATTCATTTAATCA+TGG + chr5_1:20745843-20745862 Msa0723120:intron 25.0%
! AGTTGCCTATAAATGATTAA+AGG - chr5_1:20745872-20745891 None:intergenic 25.0%
! TTGAACATAGCTACATATAT+TGG - chr5_1:20745949-20745968 None:intergenic 25.0%
!! AAACAAAAGCATGGATATAT+AGG + chr5_1:20746261-20746280 Msa0723120:CDS 25.0%
! CAAGTGGAATTTTCCTTTTA+GGG + chr5_1:20744839-20744858 Msa0723120:CDS 30.0%
!! TTCTCTTTTGTTTATTGTCC+AGG + chr5_1:20744915-20744934 Msa0723120:CDS 30.0%
TCTACGACCATAATTAAATC+CGG - chr5_1:20745034-20745053 None:intergenic 30.0%
ACATGCTTTATCATATCGAT+AGG + chr5_1:20745262-20745281 Msa0723120:intron 30.0%
CATGCTTTATCATATCGATA+GGG + chr5_1:20745263-20745282 Msa0723120:intron 30.0%
ATGCTTTATCATATCGATAG+GGG + chr5_1:20745264-20745283 Msa0723120:intron 30.0%
CAAGTCTGTATATACATAGA+TGG - chr5_1:20745308-20745327 None:intergenic 30.0%
CATCTATGTATATACAGACT+TGG + chr5_1:20745306-20745325 Msa0723120:intron 30.0%
TAAGCTAACGTAGACATTTA+AGG + chr5_1:20745766-20745785 Msa0723120:intron 30.0%
AAGCTAACGTAGACATTTAA+GGG + chr5_1:20745767-20745786 Msa0723120:intron 30.0%
! TCATTTATAGGCAACTTTTG+TGG + chr5_1:20745876-20745895 Msa0723120:intron 30.0%
TGAAGAATGTTATACTCACA+TGG + chr5_1:20745905-20745924 Msa0723120:CDS 30.0%
GAAGAATGTTATACTCACAT+GGG + chr5_1:20745906-20745925 Msa0723120:CDS 30.0%
! TATGTTCAAACCTTTAAGAG+TGG + chr5_1:20745960-20745979 Msa0723120:CDS 30.0%
! TTGGATTTTATGCTGTGATA+TGG + chr5_1:20746170-20746189 Msa0723120:CDS 30.0%
! TGGATTTTATGCTGTGATAT+GGG + chr5_1:20746171-20746190 Msa0723120:CDS 30.0%
!! TGCTTTTGTTTGACAATAGA+GGG - chr5_1:20746252-20746271 None:intergenic 30.0%
!! ATGCTTTTGTTTGACAATAG+AGG - chr5_1:20746253-20746272 None:intergenic 30.0%
TCTATTGTCAAACAAAAGCA+TGG + chr5_1:20746252-20746271 Msa0723120:CDS 30.0%
! CAAGTGGAATTTTCCTTTTA+GGG + chr5_1:20744839-20744858 Msa0723120:CDS 30.0%
!! TTCTCTTTTGTTTATTGTCC+AGG + chr5_1:20744915-20744934 Msa0723120:CDS 30.0%
TCTACGACCATAATTAAATC+CGG - chr5_1:20745034-20745053 None:intergenic 30.0%
ACATGCTTTATCATATCGAT+AGG + chr5_1:20745262-20745281 Msa0723120:intron 30.0%
CATGCTTTATCATATCGATA+GGG + chr5_1:20745263-20745282 Msa0723120:intron 30.0%
ATGCTTTATCATATCGATAG+GGG + chr5_1:20745264-20745283 Msa0723120:intron 30.0%
CAAGTCTGTATATACATAGA+TGG - chr5_1:20745308-20745327 None:intergenic 30.0%
CATCTATGTATATACAGACT+TGG + chr5_1:20745306-20745325 Msa0723120:intron 30.0%
TAAGCTAACGTAGACATTTA+AGG + chr5_1:20745766-20745785 Msa0723120:intron 30.0%
AAGCTAACGTAGACATTTAA+GGG + chr5_1:20745767-20745786 Msa0723120:intron 30.0%
! TCATTTATAGGCAACTTTTG+TGG + chr5_1:20745876-20745895 Msa0723120:intron 30.0%
TGAAGAATGTTATACTCACA+TGG + chr5_1:20745905-20745924 Msa0723120:CDS 30.0%
GAAGAATGTTATACTCACAT+GGG + chr5_1:20745906-20745925 Msa0723120:CDS 30.0%
! TATGTTCAAACCTTTAAGAG+TGG + chr5_1:20745960-20745979 Msa0723120:CDS 30.0%
! TTGGATTTTATGCTGTGATA+TGG + chr5_1:20746170-20746189 Msa0723120:CDS 30.0%
! TGGATTTTATGCTGTGATAT+GGG + chr5_1:20746171-20746190 Msa0723120:CDS 30.0%
!! TGCTTTTGTTTGACAATAGA+GGG - chr5_1:20746252-20746271 None:intergenic 30.0%
!! ATGCTTTTGTTTGACAATAG+AGG - chr5_1:20746253-20746272 None:intergenic 30.0%
TCTATTGTCAAACAAAAGCA+TGG + chr5_1:20746252-20746271 Msa0723120:CDS 30.0%
! ATACTGTGATGTGCATTTTC+AGG + chr5_1:20744674-20744693 Msa0723120:CDS 35.0%
AATATAGAAATGGGAGCAAG+TGG + chr5_1:20744823-20744842 Msa0723120:CDS 35.0%
! GCAAGTGGAATTTTCCTTTT+AGG + chr5_1:20744838-20744857 Msa0723120:CDS 35.0%
!! TCCTTTTAGGGAAATCAGAT+TGG + chr5_1:20744851-20744870 Msa0723120:CDS 35.0%
TCCAATCTGATTTCCCTAAA+AGG - chr5_1:20744855-20744874 None:intergenic 35.0%
GGGAAATCAGATTGGATAAT+TGG + chr5_1:20744859-20744878 Msa0723120:CDS 35.0%
GACCATAATTAAATCCGGAT+CGG - chr5_1:20745029-20745048 None:intergenic 35.0%
CAAAATCGTAGTTGCAATTG+TGG + chr5_1:20745091-20745110 Msa0723120:intron 35.0%
TGAATGTTGCCACAATACAA+TGG + chr5_1:20745201-20745220 Msa0723120:intron 35.0%
ATATACAGACTTGGATTGTC+AGG + chr5_1:20745315-20745334 Msa0723120:intron 35.0%
TATACAGACTTGGATTGTCA+GGG + chr5_1:20745316-20745335 Msa0723120:intron 35.0%
TACCACAAAACAGCAACAAA+TGG - chr5_1:20745369-20745388 None:intergenic 35.0%
ACAGATAGCAACTCTTTATC+AGG - chr5_1:20745452-20745471 None:intergenic 35.0%
GACGTTGCATATTATATGCA+AGG + chr5_1:20745585-20745604 Msa0723120:intron 35.0%
TGCATATTATATGCAAGGAC+CGG + chr5_1:20745590-20745609 Msa0723120:intron 35.0%
CATTTAAATGTGGAGAAGTG+AGG - chr5_1:20745633-20745652 None:intergenic 35.0%
AGAGCTCACACATTTAAATG+TGG - chr5_1:20745643-20745662 None:intergenic 35.0%
GGCTGCCTTTAATCATTTAT+AGG + chr5_1:20745864-20745883 Msa0723120:intron 35.0%
! TAGCATGGGGGTAATATTTT+TGG + chr5_1:20745993-20746012 Msa0723120:CDS 35.0%
! AGCATGGGGGTAATATTTTT+GGG + chr5_1:20745994-20746013 Msa0723120:CDS 35.0%
TTGGGAGACAATCTTTATCT+TGG + chr5_1:20746012-20746031 Msa0723120:CDS 35.0%
GAGACAATCTTTATCTTGGA+AGG + chr5_1:20746016-20746035 Msa0723120:CDS 35.0%
ACTTATTGGTGCAGCATTAT+TGG + chr5_1:20746130-20746149 Msa0723120:intron 35.0%
!! GCTTTTGTTTGACAATAGAG+GGG - chr5_1:20746251-20746270 None:intergenic 35.0%
! CAAAAGCATGGATATATAGG+AGG + chr5_1:20746264-20746283 Msa0723120:exon 35.0%
!!! CTTTTCTAAGGTGGTAAACA+TGG + chr5_1:20746299-20746318 Msa0723120:three_prime_UTR 35.0%
! ATACTGTGATGTGCATTTTC+AGG + chr5_1:20744674-20744693 Msa0723120:CDS 35.0%
AATATAGAAATGGGAGCAAG+TGG + chr5_1:20744823-20744842 Msa0723120:CDS 35.0%
! GCAAGTGGAATTTTCCTTTT+AGG + chr5_1:20744838-20744857 Msa0723120:CDS 35.0%
!! TCCTTTTAGGGAAATCAGAT+TGG + chr5_1:20744851-20744870 Msa0723120:CDS 35.0%
TCCAATCTGATTTCCCTAAA+AGG - chr5_1:20744855-20744874 None:intergenic 35.0%
GGGAAATCAGATTGGATAAT+TGG + chr5_1:20744859-20744878 Msa0723120:CDS 35.0%
GACCATAATTAAATCCGGAT+CGG - chr5_1:20745029-20745048 None:intergenic 35.0%
CAAAATCGTAGTTGCAATTG+TGG + chr5_1:20745091-20745110 Msa0723120:intron 35.0%
TGAATGTTGCCACAATACAA+TGG + chr5_1:20745201-20745220 Msa0723120:intron 35.0%
ATATACAGACTTGGATTGTC+AGG + chr5_1:20745315-20745334 Msa0723120:intron 35.0%
TATACAGACTTGGATTGTCA+GGG + chr5_1:20745316-20745335 Msa0723120:intron 35.0%
TACCACAAAACAGCAACAAA+TGG - chr5_1:20745369-20745388 None:intergenic 35.0%
ACAGATAGCAACTCTTTATC+AGG - chr5_1:20745452-20745471 None:intergenic 35.0%
GACGTTGCATATTATATGCA+AGG + chr5_1:20745585-20745604 Msa0723120:intron 35.0%
TGCATATTATATGCAAGGAC+CGG + chr5_1:20745590-20745609 Msa0723120:intron 35.0%
CATTTAAATGTGGAGAAGTG+AGG - chr5_1:20745633-20745652 None:intergenic 35.0%
AGAGCTCACACATTTAAATG+TGG - chr5_1:20745643-20745662 None:intergenic 35.0%
GGCTGCCTTTAATCATTTAT+AGG + chr5_1:20745864-20745883 Msa0723120:intron 35.0%
! TAGCATGGGGGTAATATTTT+TGG + chr5_1:20745993-20746012 Msa0723120:CDS 35.0%
! AGCATGGGGGTAATATTTTT+GGG + chr5_1:20745994-20746013 Msa0723120:CDS 35.0%
TTGGGAGACAATCTTTATCT+TGG + chr5_1:20746012-20746031 Msa0723120:CDS 35.0%
GAGACAATCTTTATCTTGGA+AGG + chr5_1:20746016-20746035 Msa0723120:CDS 35.0%
ACTTATTGGTGCAGCATTAT+TGG + chr5_1:20746130-20746149 Msa0723120:intron 35.0%
!! GCTTTTGTTTGACAATAGAG+GGG - chr5_1:20746251-20746270 None:intergenic 35.0%
! CAAAAGCATGGATATATAGG+AGG + chr5_1:20746264-20746283 Msa0723120:exon 35.0%
!!! CTTTTCTAAGGTGGTAAACA+TGG + chr5_1:20746299-20746318 Msa0723120:three_prime_UTR 35.0%
!! TGTGATGTGCATTTTCAGGA+TGG + chr5_1:20744678-20744697 Msa0723120:CDS 40.0%
! TATGAAAAAGCATAGCAGCC+AGG + chr5_1:20744711-20744730 Msa0723120:CDS 40.0%
GAGAACCACACAAGTAAATG+TGG + chr5_1:20745003-20745022 Msa0723120:intron 40.0%
GCAATTGTGGCGCAATATAA+AGG + chr5_1:20745104-20745123 Msa0723120:intron 40.0%
AACCGTAATAGCTGTTGCAT+TGG + chr5_1:20745167-20745186 Msa0723120:intron 40.0%
AGCCAATGCAACAGCTATTA+CGG - chr5_1:20745172-20745191 None:intergenic 40.0%
TGTTGCGAACCATTGTATTG+TGG - chr5_1:20745213-20745232 None:intergenic 40.0%
! GTGTTTATCACTAGCTCTTC+TGG - chr5_1:20745347-20745366 None:intergenic 40.0%
!!! CACCATTTGTTGCTGTTTTG+TGG + chr5_1:20745364-20745383 Msa0723120:CDS 40.0%
ATTGTAGCTCTCATTGCAGA+GGG + chr5_1:20745401-20745420 Msa0723120:CDS 40.0%
CAGAGGGAAATTCAAATGCT+TGG + chr5_1:20745417-20745436 Msa0723120:CDS 40.0%
TACCAACTAAGCTAAGCTCA+CGG - chr5_1:20745563-20745582 None:intergenic 40.0%
! TGAGCTTAGCTTAGTTGGTA+GGG + chr5_1:20745563-20745582 Msa0723120:intron 40.0%
AGTGCAATGACCACTCTTAA+AGG - chr5_1:20745973-20745992 None:intergenic 40.0%
GGAGCTGCTATCATAGTTAT+TGG + chr5_1:20746151-20746170 Msa0723120:CDS 40.0%
AGCATGGATATATAGGAGGA+TGG + chr5_1:20746268-20746287 Msa0723120:exon 40.0%
!! ATGGAGACTCTGCTTTTCTA+AGG + chr5_1:20746287-20746306 Msa0723120:three_prime_UTR 40.0%
!! TGTGATGTGCATTTTCAGGA+TGG + chr5_1:20744678-20744697 Msa0723120:CDS 40.0%
! TATGAAAAAGCATAGCAGCC+AGG + chr5_1:20744711-20744730 Msa0723120:CDS 40.0%
GAGAACCACACAAGTAAATG+TGG + chr5_1:20745003-20745022 Msa0723120:intron 40.0%
GCAATTGTGGCGCAATATAA+AGG + chr5_1:20745104-20745123 Msa0723120:intron 40.0%
AACCGTAATAGCTGTTGCAT+TGG + chr5_1:20745167-20745186 Msa0723120:intron 40.0%
AGCCAATGCAACAGCTATTA+CGG - chr5_1:20745172-20745191 None:intergenic 40.0%
TGTTGCGAACCATTGTATTG+TGG - chr5_1:20745213-20745232 None:intergenic 40.0%
! GTGTTTATCACTAGCTCTTC+TGG - chr5_1:20745347-20745366 None:intergenic 40.0%
!!! CACCATTTGTTGCTGTTTTG+TGG + chr5_1:20745364-20745383 Msa0723120:CDS 40.0%
ATTGTAGCTCTCATTGCAGA+GGG + chr5_1:20745401-20745420 Msa0723120:CDS 40.0%
CAGAGGGAAATTCAAATGCT+TGG + chr5_1:20745417-20745436 Msa0723120:CDS 40.0%
TACCAACTAAGCTAAGCTCA+CGG - chr5_1:20745563-20745582 None:intergenic 40.0%
! TGAGCTTAGCTTAGTTGGTA+GGG + chr5_1:20745563-20745582 Msa0723120:intron 40.0%
AGTGCAATGACCACTCTTAA+AGG - chr5_1:20745973-20745992 None:intergenic 40.0%
GGAGCTGCTATCATAGTTAT+TGG + chr5_1:20746151-20746170 Msa0723120:CDS 40.0%
AGCATGGATATATAGGAGGA+TGG + chr5_1:20746268-20746287 Msa0723120:exon 40.0%
!! ATGGAGACTCTGCTTTTCTA+AGG + chr5_1:20746287-20746306 Msa0723120:three_prime_UTR 40.0%
AGCAGCCAGGCAAAAGTTAT+TGG + chr5_1:20744724-20744743 Msa0723120:CDS 45.0%
! CTGTGCCAATAACTTTTGCC+TGG - chr5_1:20744732-20744751 None:intergenic 45.0%
GGCAAAAGTTATTGGCACAG+TGG + chr5_1:20744732-20744751 Msa0723120:CDS 45.0%
ATCGGCCACATTTACTTGTG+TGG - chr5_1:20745011-20745030 None:intergenic 45.0%
ACAAGTAAATGTGGCCGATC+CGG + chr5_1:20745012-20745031 Msa0723120:intron 45.0%
GGCCGATCCGGATTTAATTA+TGG + chr5_1:20745024-20745043 Msa0723120:intron 45.0%
CTCTGCAATGAGAGCTACAA+TGG - chr5_1:20745402-20745421 None:intergenic 45.0%
CATTGTAGCTCTCATTGCAG+AGG + chr5_1:20745400-20745419 Msa0723120:CDS 45.0%
ACCAACTAAGCTAAGCTCAC+GGG - chr5_1:20745562-20745581 None:intergenic 45.0%
GTGAGCTTAGCTTAGTTGGT+AGG + chr5_1:20745562-20745581 Msa0723120:intron 45.0%
ACATGGGCATGTCGTAAGAA+AGG + chr5_1:20745922-20745941 Msa0723120:CDS 45.0%
AGTGGTCATTGCACTTAGCA+TGG + chr5_1:20745978-20745997 Msa0723120:CDS 45.0%
GTGGTCATTGCACTTAGCAT+GGG + chr5_1:20745979-20745998 Msa0723120:CDS 45.0%
TGGTCATTGCACTTAGCATG+GGG + chr5_1:20745980-20745999 Msa0723120:CDS 45.0%
!! GAGACTCTGCTTTTCTAAGG+TGG + chr5_1:20746290-20746309 Msa0723120:three_prime_UTR 45.0%
AGCAGCCAGGCAAAAGTTAT+TGG + chr5_1:20744724-20744743 Msa0723120:CDS 45.0%
! CTGTGCCAATAACTTTTGCC+TGG - chr5_1:20744732-20744751 None:intergenic 45.0%
GGCAAAAGTTATTGGCACAG+TGG + chr5_1:20744732-20744751 Msa0723120:CDS 45.0%
ATCGGCCACATTTACTTGTG+TGG - chr5_1:20745011-20745030 None:intergenic 45.0%
ACAAGTAAATGTGGCCGATC+CGG + chr5_1:20745012-20745031 Msa0723120:intron 45.0%
GGCCGATCCGGATTTAATTA+TGG + chr5_1:20745024-20745043 Msa0723120:intron 45.0%
CTCTGCAATGAGAGCTACAA+TGG - chr5_1:20745402-20745421 None:intergenic 45.0%
CATTGTAGCTCTCATTGCAG+AGG + chr5_1:20745400-20745419 Msa0723120:CDS 45.0%
ACCAACTAAGCTAAGCTCAC+GGG - chr5_1:20745562-20745581 None:intergenic 45.0%
GTGAGCTTAGCTTAGTTGGT+AGG + chr5_1:20745562-20745581 Msa0723120:intron 45.0%
ACATGGGCATGTCGTAAGAA+AGG + chr5_1:20745922-20745941 Msa0723120:CDS 45.0%
AGTGGTCATTGCACTTAGCA+TGG + chr5_1:20745978-20745997 Msa0723120:CDS 45.0%
GTGGTCATTGCACTTAGCAT+GGG + chr5_1:20745979-20745998 Msa0723120:CDS 45.0%
TGGTCATTGCACTTAGCATG+GGG + chr5_1:20745980-20745999 Msa0723120:CDS 45.0%
!! GAGACTCTGCTTTTCTAAGG+TGG + chr5_1:20746290-20746309 Msa0723120:three_prime_UTR 45.0%
GCACAGTGGTCTCTATTGCA+GGG + chr5_1:20744746-20744765 Msa0723120:CDS 50.0%
CACAGTGGTCTCTATTGCAG+GGG + chr5_1:20744747-20744766 Msa0723120:CDS 50.0%
TCCCGTGAGCTTAGCTTAGT+TGG + chr5_1:20745558-20745577 Msa0723120:intron 50.0%
AAGGACCGGTGTTTGAACTC+CGG + chr5_1:20745604-20745623 Msa0723120:intron 50.0%
! ATGTGGAGAAGTGAGGTGTC+CGG - chr5_1:20745626-20745645 None:intergenic 50.0%
GGTCATTGCACTTAGCATGG+GGG + chr5_1:20745981-20746000 Msa0723120:CDS 50.0%
GATATGGGCACAAGCTCAAG+AGG + chr5_1:20746186-20746205 Msa0723120:CDS 50.0%
GCACAGTGGTCTCTATTGCA+GGG + chr5_1:20744746-20744765 Msa0723120:CDS 50.0%
CACAGTGGTCTCTATTGCAG+GGG + chr5_1:20744747-20744766 Msa0723120:CDS 50.0%
TCCCGTGAGCTTAGCTTAGT+TGG + chr5_1:20745558-20745577 Msa0723120:intron 50.0%
AAGGACCGGTGTTTGAACTC+CGG + chr5_1:20745604-20745623 Msa0723120:intron 50.0%
! ATGTGGAGAAGTGAGGTGTC+CGG - chr5_1:20745626-20745645 None:intergenic 50.0%
GGTCATTGCACTTAGCATGG+GGG + chr5_1:20745981-20746000 Msa0723120:CDS 50.0%
GATATGGGCACAAGCTCAAG+AGG + chr5_1:20746186-20746205 Msa0723120:CDS 50.0%
GGCACAGTGGTCTCTATTGC+AGG + chr5_1:20744745-20744764 Msa0723120:CDS 55.0%
GGTGTCCGGAGTTCAAACAC+CGG - chr5_1:20745612-20745631 None:intergenic 55.0%
GGCACAGTGGTCTCTATTGC+AGG + chr5_1:20744745-20744764 Msa0723120:CDS 55.0%
GGTGTCCGGAGTTCAAACAC+CGG - chr5_1:20745612-20745631 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 20744621 20746429 20744621 ID=Msa0723120;Name=Msa0723120
chr5_1 mRNA 20744621 20746429 20744621 ID=Msa0723120-mRNA-1;Parent=Msa0723120;Name=Msa0723120-mRNA-1;_AED=0.34;_eAED=0.34;_QI=49|0.66|0.5|1|0.66|0.75|4|147|234
chr5_1 exon 20744621 20744936 20744621 ID=Msa0723120-mRNA-1:exon:7900;Parent=Msa0723120-mRNA-1
chr5_1 exon 20745323 20745469 20745323 ID=Msa0723120-mRNA-1:exon:7901;Parent=Msa0723120-mRNA-1
chr5_1 exon 20745886 20746037 20745886 ID=Msa0723120-mRNA-1:exon:7902;Parent=Msa0723120-mRNA-1
chr5_1 exon 20746144 20746429 20746144 ID=Msa0723120-mRNA-1:exon:7903;Parent=Msa0723120-mRNA-1
chr5_1 five_prime_UTR 20744621 20744669 20744621 ID=Msa0723120-mRNA-1:five_prime_utr;Parent=Msa0723120-mRNA-1
chr5_1 CDS 20744670 20744936 20744670 ID=Msa0723120-mRNA-1:cds;Parent=Msa0723120-mRNA-1
chr5_1 CDS 20745323 20745469 20745323 ID=Msa0723120-mRNA-1:cds;Parent=Msa0723120-mRNA-1
chr5_1 CDS 20745886 20746037 20745886 ID=Msa0723120-mRNA-1:cds;Parent=Msa0723120-mRNA-1
chr5_1 CDS 20746144 20746282 20746144 ID=Msa0723120-mRNA-1:cds;Parent=Msa0723120-mRNA-1
chr5_1 three_prime_UTR 20746283 20746429 20746283 ID=Msa0723120-mRNA-1:three_prime_utr;Parent=Msa0723120-mRNA-1
Gene Sequence

>Msa0723120

ATGAATACTGTGATGTGCATTTTCAGGATGGAAGTTCTAAATATGAAAAAGCATAGCAGCCAGGCAAAAGTTATTGGCACAGTGGTCTCTATTGCAGGGGCATTAGTTGTGACATTTTATAAAGGGATACCATTGATTAATGATGCCATTAAAAATATAGAAATGGGAGCAAGTGGAATTTTCCTTTTAGGGAAATCAGATTGGATAATTGGTGCTTTTCTTCTTGCACTTAGTAGTTTTTGTCTTTCTCTTTTGTTTATTGTCCAGACTTGGATTGTCAGGGATAATCCAGAAGAGCTAGTGATAAACACCATTTGTTGCTGTTTTGTGGTAATCATATCTACCATTGTAGCTCTCATTGCAGAGGGAAATTCAAATGCTTGGAGACTCAGACCTGATAAAGAGTTGCTATCTGCAACTTTTGTGGAATCAGTGAAGAATGTTATACTCACATGGGCATGTCGTAAGAAAGGACCAATATATGTAGCTATGTTCAAACCTTTAAGAGTGGTCATTGCACTTAGCATGGGGGTAATATTTTTGGGAGACAATCTTTATCTTGGAAGCATTATTGGAGCTGCTATCATAGTTATTGGATTTTATGCTGTGATATGGGCACAAGCTCAAGAGGAACACACAACAAGTGAAAACTTGTTGTCATCTTCTTCAGCCCCTCTATTGTCAAACAAAAGCATGGATATATAG
Protein sequence

>Msa0723120

MNTVMCIFRMEVLNMKKHSSQAKVIGTVVSIAGALVVTFYKGIPLINDAIKNIEMGASGIFLLGKSDWIIGAFLLALSSFCLSLLFIVQTWIVRDNPEELVINTICCCFVVIISTIVALIAEGNSNAWRLRPDKELLSATFVESVKNVILTWACRKKGPIYVAMFKPLRVVIALSMGVIFLGDNLYLGSIIGAAIIVIGFYAVIWAQAQEEHTTSENLLSSSSAPLLSNKSMDI*