AlfalfaGEDB | Msa0097950

M. sativa cultivar zhongmu-4 / Msa0097950

KEGG: K02703|K03243
GO: GO:0000166 GO:0001882 GO:0001883 GO:0002181 GO:0002183 GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019538 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0033290 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0070993 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF03144.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0097950	XP_024642096.1	92.195	410	0	4	1	378	932	1341	0.0	747

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0097950	sp\|Q10251\|IF2P_SCHPO	53.461	419	146	9	1	377	667	1078	2.19e-133	410

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0097950	A0A396JVW8	92.195	410	0	4	1	378	932	1341	0.0	747

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa0097950	0.851395	9.124397e-61	-8.615850e-47
Msa0002680	Msa0097950	0.820638	6.170188e-53	-8.615850e-47
Msa0002710	Msa0097950	0.803157	3.985856e-49	-8.615850e-47
Msa0003220	Msa0097950	0.855310	6.874998e-62	-8.615850e-47
Msa0003270	Msa0097950	0.834784	2.452633e-56	-8.615850e-47
Msa0003630	Msa0097950	0.820388	7.041667e-53	-8.615850e-47
Msa0004060	Msa0097950	0.809273	2.052963e-50	-8.615850e-47
Msa0004540	Msa0097950	0.832733	7.985736e-56	-8.615850e-47
Msa0006880	Msa0097950	0.843172	1.649861e-58	-8.615850e-47
Msa0007850	Msa0097950	0.864953	8.385599e-65	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0097950	MtrunA17_Chr1g0202021	92.195	410	0	4	1	378	932	1341	0.0	747
Msa0097950	MtrunA17_Chr1g0201991	82.927	410	38	4	1	378	417	826	0.0	665
Msa0097950	MtrunA17_Chr4g0000991	82.036	167	25	1	1	162	222	388	4.23e-90	276
Msa0097950	MtrunA17_Chr4g0000221	67.886	246	51	9	1	231	203	435	6.57e-90	278
Msa0097950	MtrunA17_Chr4g0004141	57.371	251	59	6	123	357	212	430	4.36e-78	247
Msa0097950	MtrunA17_Chr4g0004141	78.049	41	9	0	2	42	168	208	3.96e-14	73.6
Msa0097950	MtrunA17_Chr7g0263861	67.669	133	34	2	168	294	144	273	1.42e-51	173
Msa0097950	MtrunA17_Chr7g0264901	61.379	145	50	1	1	139	214	358	4.07e-50	173
Msa0097950	MtrunA17_Chr7g0264471	67.123	73	24	0	3	75	232	304	1.35e-26	108
Msa0097950	MtrunA17_Chr4g0038951	85.714	49	6	1	50	98	33	80	2.77e-19	81.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0097950	AT1G76810.1	78.293	410	56	5	1	378	886	1294	0.0	619
Msa0097950	AT1G76720.1	75.067	373	66	6	1	357	809	1170	3.41e-180	532
Msa0097950	AT1G76720.2	75.067	373	66	6	1	357	842	1203	1.22e-179	532
Msa0097950	AT1G21160.1	64.183	416	110	7	1	378	678	1092	1.33e-172	510
Msa0097950	AT2G27700.1	70.342	263	62	4	1	247	216	478	1.31e-115	345
Msa0097950	AT2G27700.2	70.076	264	62	5	1	247	216	479	6.74e-114	340

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Find 131 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAGAATCTGCGGATG+AGG	0.496199	1_3:-3832679	Msa0097950:CDS
AAAGAAATCAAAGCTGCTAT+GGG	0.542406	1_3:-3833275	Msa0097950:CDS
AAAGGCAGCTTTGGAAGACG+TGG	0.608385	1_3:-3833045	Msa0097950:CDS
AAATTGTGTCTTCAACAAGA+AGG	0.623805	1_3:-3832625	Msa0097950:CDS
AACAGCAGAAAATGTTCGGG+AGG	0.628525	1_3:-3831675	Msa0097950:CDS
AAGAACAGCAGAAAATGTTC+GGG	0.470152	1_3:-3831678	Msa0097950:CDS
AATAACCTTGACTTCCAAAA+CGG	0.496574	1_3:+3833888	None:intergenic
AATGAAGGAACTTCGTGTTA+AGG	0.444264	1_3:-3833663	Msa0097950:intron
AATTCAAGCACATACCTTAA+TGG	0.180909	1_3:+3832040	None:intergenic
AATTCACTAAAAGTAATTTA+GGG	0.339278	1_3:-3830236	Msa0097950:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATACAATGCTACACAAAAG+AGG	+	chr1_3:3830362-3830381	None:intergenic	30.0%
GTGTAGCATTGTATTACAAA+AGG	-	chr1_3:3830367-3830386	Msa0097950:three_prime_UTR	30.0%
GTAGGCATCTTAAAAAATGT+AGG	+	chr1_3:3830636-3830655	None:intergenic	30.0%
AGACAAGTTAGACACAATTT+GGG	+	chr1_3:3830808-3830827	None:intergenic	30.0%
TCATCCAAAGGATGATAATT+TGG	-	chr1_3:3830843-3830862	Msa0097950:three_prime_UTR	30.0%
TAATCTGCTGAATACTTTGT+CGG	-	chr1_3:3830930-3830949	Msa0097950:intron	30.0%
AATAACCTTGACTTCCAAAA+CGG	+	chr1_3:3831184-3831203	None:intergenic	30.0%
TTAATGGTGTTCTTCATGAA+GGG	-	chr1_3:3831238-3831257	Msa0097950:intron	30.0%
TAGAAATTTGAATGGGTCAA+TGG	-	chr1_3:3831490-3831509	Msa0097950:intron	30.0%
AAATAACGTGTTAGAAGCTT+AGG	-	chr1_3:3831524-3831543	Msa0097950:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	3830228	3834863	3830228	ID=Msa0097950;Name=Msa0097950
chr1_3	mRNA	3830228	3834863	3830228	ID=Msa0097950-mRNA-1;Parent=Msa0097950;Name=Msa0097950-mRNA-1;_AED=0.09;_eAED=0.09;_QI=62\|0.6\|0.45\|1\|0.8\|0.72\|11\|639\|378
chr1_3	exon	3830228	3830932	3830228	ID=Msa0097950-mRNA-1:exon:1261;Parent=Msa0097950-mRNA-1
chr1_3	exon	3831651	3831719	3831651	ID=Msa0097950-mRNA-1:exon:1260;Parent=Msa0097950-mRNA-1
chr1_3	exon	3832055	3832174	3832055	ID=Msa0097950-mRNA-1:exon:1259;Parent=Msa0097950-mRNA-1
chr1_3	exon	3832581	3832765	3832581	ID=Msa0097950-mRNA-1:exon:1258;Parent=Msa0097950-mRNA-1
chr1_3	exon	3832784	3832994	3832784	ID=Msa0097950-mRNA-1:exon:1257;Parent=Msa0097950-mRNA-1
chr1_3	exon	3833007	3833138	3833007	ID=Msa0097950-mRNA-1:exon:1256;Parent=Msa0097950-mRNA-1
chr1_3	exon	3833256	3833315	3833256	ID=Msa0097950-mRNA-1:exon:1255;Parent=Msa0097950-mRNA-1
chr1_3	exon	3833664	3833729	3833664	ID=Msa0097950-mRNA-1:exon:1254;Parent=Msa0097950-mRNA-1
chr1_3	exon	3833819	3833914	3833819	ID=Msa0097950-mRNA-1:exon:1253;Parent=Msa0097950-mRNA-1
chr1_3	exon	3834011	3834101	3834011	ID=Msa0097950-mRNA-1:exon:1252;Parent=Msa0097950-mRNA-1
chr1_3	exon	3834761	3834863	3834761	ID=Msa0097950-mRNA-1:exon:1251;Parent=Msa0097950-mRNA-1
chr1_3	five_prime_UTR	3834802	3834863	3834802	ID=Msa0097950-mRNA-1:five_prime_utr;Parent=Msa0097950-mRNA-1
chr1_3	CDS	3834761	3834801	3834761	ID=Msa0097950-mRNA-1:cds;Parent=Msa0097950-mRNA-1
chr1_3	CDS	3834011	3834101	3834011	ID=Msa0097950-mRNA-1:cds;Parent=Msa0097950-mRNA-1
chr1_3	CDS	3833819	3833914	3833819	ID=Msa0097950-mRNA-1:cds;Parent=Msa0097950-mRNA-1
chr1_3	CDS	3833664	3833729	3833664	ID=Msa0097950-mRNA-1:cds;Parent=Msa0097950-mRNA-1
chr1_3	CDS	3833256	3833315	3833256	ID=Msa0097950-mRNA-1:cds;Parent=Msa0097950-mRNA-1
chr1_3	CDS	3833007	3833138	3833007	ID=Msa0097950-mRNA-1:cds;Parent=Msa0097950-mRNA-1
chr1_3	CDS	3832784	3832994	3832784	ID=Msa0097950-mRNA-1:cds;Parent=Msa0097950-mRNA-1
chr1_3	CDS	3832581	3832765	3832581	ID=Msa0097950-mRNA-1:cds;Parent=Msa0097950-mRNA-1
chr1_3	CDS	3832055	3832174	3832055	ID=Msa0097950-mRNA-1:cds;Parent=Msa0097950-mRNA-1
chr1_3	CDS	3831651	3831719	3831651	ID=Msa0097950-mRNA-1:cds;Parent=Msa0097950-mRNA-1
chr1_3	CDS	3830867	3830932	3830867	ID=Msa0097950-mRNA-1:cds;Parent=Msa0097950-mRNA-1
chr1_3	three_prime_UTR	3830228	3830866	3830228	ID=Msa0097950-mRNA-1:three_prime_utr;Parent=Msa0097950-mRNA-1

Gene Sequence

>Msa0097950

ATGGGCGAGACATTCAGCATTGTGCCTACAAGTGCAATAAGTGGTGAAGGAATCCCGGATATGTTATTACTATTAGTTCAGTGGACCCAAAAGACCATGACCGAGAAGCTTACATACAGCGAAGAAGTGCAGTGTACCGTTTTGGAAGTCAAGGTTATTGAAGGCCATGGAACTACTATTGATGTTGTTTTAGTTAATGGTGTTCTTCATGAAGGGGATCAAATAGTTGGTCCAATTGTTACCACAATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTTCGTGTTAAGGGATCATATATCCATCACAAAGAAATCAAAGCTGCTATGGGAATCAAGATCACTGCCCAGGGGCTTGAACATGCTATTGCTGGAGCTAGTTTATATGTGGTAAAGCCTGATGATGATTTGGAATATATTAAAAAGGCAGCTTTGGAAGACGTGGAGTCGGTCTTGAGCAGGATTGACAGGAGTGGTGAGGGCGCATCTACCCTTGGCTCATTGGAAGCATTATTGGAGTTTCTGAAAACTCCAGAAGTGAATATTCCTGTTAGTGCTATAAACATAGGCCCTGTACACAAGAAGGATGTGATGAAGGCCAGTGTAATGCTTGAAAAGAAACGAGAGTATGCTACTATATTGGCATTTGATGTCAAAGTCACCCCTGAAGCTAGGGATCTTGCAGAAGAATTGGCGGATATCATTTATCATCTATTTGATCAATTTAAGGCTTACATGGACAACATTAAGGAGGAGAAAAAGAAAGAATCTGCGGATGAGGCAGTCTTCCCATGTGTTCTGAAGATCTTACCAAATTGTGTCTTCAACAAGAAGGATCCGATTGTTTTGGGAGTTGATATCCTTGAAGGCATTTTAAAGATTGGAACTCCAATTTGTATCCCTTCCCAAGAGTTCATTGATATTGGTCGCATTGCCTCCATTGAGAATAACCATAAACCGGTTGATTATGCGAAGAAAGGGCAGAAAGTAGCCATTAAGATTGTTGGCAGCAATTCTGAAGAACAGCAGAAAATGTTCGGGAGGCATTTTGAGATTGATGATGAACTTGATGATCTGACTATGGAGGAATGGAAGCTGGTGGTTAAATTGAAGACTTTGTTCAAGATACAATAA

Protein sequence

>Msa0097950

MGETFSIVPTSAISGEGIPDMLLLLVQWTQKTMTEKLTYSEEVQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVGPIVTTIRALLTPHPMKELRVKGSYIHHKEIKAAMGIKITAQGLEHAIAGASLYVVKPDDDLEYIKKAALEDVESVLSRIDRSGEGASTLGSLEALLEFLKTPEVNIPVSAINIGPVHKKDVMKASVMLEKKREYATILAFDVKVTPEARDLAEELADIIYHLFDQFKAYMDNIKEEKKKESADEAVFPCVLKILPNCVFNKKDPIVLGVDILEGILKIGTPICIPSQEFIDIGRIASIENNHKPVDYAKKGQKVAIKIVGSNSEEQQKMFGRHFEIDDELDDLTMEEWKLVVKLKTLFKIQ*