AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0097950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097950 MtrunA17_Chr1g0202021 92.195 410 0 4 1 378 932 1341 0.0 747
Msa0097950 MtrunA17_Chr1g0201991 82.927 410 38 4 1 378 417 826 0.0 665
Msa0097950 MtrunA17_Chr4g0000991 82.036 167 25 1 1 162 222 388 4.23e-90 276
Msa0097950 MtrunA17_Chr4g0000221 67.886 246 51 9 1 231 203 435 6.57e-90 278
Msa0097950 MtrunA17_Chr4g0004141 57.371 251 59 6 123 357 212 430 4.36e-78 247
Msa0097950 MtrunA17_Chr4g0004141 78.049 41 9 0 2 42 168 208 3.96e-14 73.6
Msa0097950 MtrunA17_Chr7g0263861 67.669 133 34 2 168 294 144 273 1.42e-51 173
Msa0097950 MtrunA17_Chr7g0264901 61.379 145 50 1 1 139 214 358 4.07e-50 173
Msa0097950 MtrunA17_Chr7g0264471 67.123 73 24 0 3 75 232 304 1.35e-26 108
Msa0097950 MtrunA17_Chr4g0038951 85.714 49 6 1 50 98 33 80 2.77e-19 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097950 AT1G76810.1 78.293 410 56 5 1 378 886 1294 0.0 619
Msa0097950 AT1G76720.1 75.067 373 66 6 1 357 809 1170 3.41e-180 532
Msa0097950 AT1G76720.2 75.067 373 66 6 1 357 842 1203 1.22e-179 532
Msa0097950 AT1G21160.1 64.183 416 110 7 1 378 678 1092 1.33e-172 510
Msa0097950 AT2G27700.1 70.342 263 62 4 1 247 216 478 1.31e-115 345
Msa0097950 AT2G27700.2 70.076 264 62 5 1 247 216 479 6.74e-114 340

Find 131 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCTATTTGATCAATTTA+AGG 0.120606 1_3:-3832730 Msa0097950:CDS
GAATTCACTAAAAGTAATTT+AGG 0.146710 1_3:-3830237 Msa0097950:three_prime_UTR
AATTCAAGCACATACCTTAA+TGG 0.180909 1_3:+3832040 None:intergenic
TCGCATAATCAACCGGTTTA+TGG 0.181960 1_3:+3832081 None:intergenic
GTGTTCCATGCTTTGCATTT+TGG 0.208952 1_3:-3830437 Msa0097950:three_prime_UTR
GCTTCTCGGTCATGGTCTTT+TGG 0.220651 1_3:+3834034 None:intergenic
TGGCTCATTGGAAGCATTAT+TGG 0.222532 1_3:-3832961 Msa0097950:CDS
CAAGAAGGATCCGATTGTTT+TGG 0.225158 1_3:-3832610 Msa0097950:CDS
TTCTTGTTGAAGACACAATT+TGG 0.236922 1_3:+3832627 None:intergenic
GTATAGTAAATCACAAAATT+TGG 0.265554 1_3:+3830602 None:intergenic
TTTAGTGAATTCAAACTATC+AGG 0.303132 1_3:+3830248 None:intergenic
CATAGGTATGCATGCTTGTT+TGG 0.310986 1_3:-3830401 Msa0097950:three_prime_UTR
TGATTTGGAATATATTAAAA+AGG 0.312978 1_3:-3833063 Msa0097950:CDS
AGGGCAGAAAGTAGCCATTA+AGG 0.323078 1_3:-3832054 Msa0097950:intron
GTCCTTGACAGTTACCCTTT+TGG 0.324115 1_3:+3830631 None:intergenic
TCTTGGGAAGGGATACAAAT+TGG 0.327465 1_3:+3832143 None:intergenic
GGCTTACATGGACAACATTA+AGG 0.327960 1_3:-3832709 Msa0097950:CDS
TCCCAAGAGTTCATTGATAT+TGG 0.331197 1_3:-3832128 Msa0097950:CDS
TAGGGATCTTGCAGAAGAAT+TGG 0.335361 1_3:-3832784 Msa0097950:CDS
TCTGCAAGATCCCTAGCTTC+AGG 0.339277 1_3:+3832792 None:intergenic
AATTCACTAAAAGTAATTTA+GGG 0.339278 1_3:-3830236 Msa0097950:three_prime_UTR
GGCATCTACCCTTGGCTCAT+TGG 0.352679 1_3:-3832973 Msa0097950:CDS
CTCCTGCAGCTTGGATCCTC+TGG 0.358186 1_3:-3830654 Msa0097950:three_prime_UTR
ATCACATCCTTCTTGTGTAC+AGG 0.364120 1_3:+3832885 None:intergenic
TTAACACGAAGTTCCTTCAT+TGG 0.364194 1_3:+3833665 None:intergenic
GGGCTTGAACATGCTATTGC+TGG 0.370042 1_3:-3833116 Msa0097950:CDS
CGGTTTATGGTTATTCTCAA+TGG 0.370182 1_3:+3832094 None:intergenic
CGGTATAATGCCGGACTTTG+AGG 0.371562 1_3:-3830777 Msa0097950:three_prime_UTR
TTCGCTGTATGTAAGCTTCT+CGG 0.376770 1_3:+3834020 None:intergenic
ATACCTTTAAAATGCCTTCA+AGG 0.381890 1_3:+3832577 None:intergenic
AGTTACCTTATTGCACTTGT+AGG 0.383336 1_3:+3834755 None:intergenic
CAACTTCGTTTGCAGATTGT+TGG 0.386207 1_3:-3831712 Msa0097950:intron
TGGCTACCAGTGTACCGTTT+TGG 0.388026 1_3:-3833902 Msa0097950:intron
ACGAGAGTATGCTACTATAT+TGG 0.389206 1_3:-3832835 Msa0097950:CDS
GACCAATATCAATGAACTCT+TGG 0.397471 1_3:+3832126 None:intergenic
GCTCGAATTGTGGTAACAAT+TGG 0.397760 1_3:+3833704 None:intergenic
CTAACAGGAATATTCACTTC+TGG 0.399897 1_3:+3832924 None:intergenic
CCTATGTTTATAGCACTAAC+AGG 0.407601 1_3:+3832909 None:intergenic
CTGCAAGATCCCTAGCTTCA+GGG 0.408159 1_3:+3832793 None:intergenic
ACTAATAGTAATAACATATC+CGG 0.410722 1_3:+3834066 None:intergenic
GAAGAACAGCAGAAAATGTT+CGG 0.414887 1_3:-3831679 Msa0097950:CDS
ATATATTCCAAATCATCATC+AGG 0.422912 1_3:+3833071 None:intergenic
GGTAAAGCCTGATGATGATT+TGG 0.424032 1_3:-3833078 Msa0097950:CDS
CCTTTCTTCGCATAATCAAC+CGG 0.430053 1_3:+3832074 None:intergenic
GAACACCAAATGTATACAAA+TGG 0.432746 1_3:+3830454 None:intergenic
TTGTGCCTACAAGTGCAATA+AGG 0.435172 1_3:-3834760 Msa0097950:intron
GCTTGGATCCTCTGGCCAAA+AGG 0.439197 1_3:-3830646 Msa0097950:three_prime_UTR
CAGCTTTGATTTCTTTGTGA+TGG 0.440327 1_3:+3833282 None:intergenic
AGGACAGAAATTGTCATCAT+TGG 0.442816 1_3:+3830268 None:intergenic
AATGAAGGAACTTCGTGTTA+AGG 0.444264 1_3:-3833663 Msa0097950:intron
GTTAATGGTGTTCTTCATGA+AGG 0.449872 1_3:-3833832 Msa0097950:CDS
GACATAGGATGATCTGACTA+TGG 0.460108 1_3:-3830917 Msa0097950:intron
CAAAGAAATCAAAGCTGCTA+TGG 0.462455 1_3:-3833276 Msa0097950:CDS
TTGGAAGTCAAGGTTATTGA+AGG 0.462841 1_3:-3833883 Msa0097950:CDS
TGATCAATTTAAGGCTTACA+TGG 0.463950 1_3:-3832721 Msa0097950:CDS
TTGGGAGTTGATATCCTTGA+AGG 0.466103 1_3:-3832591 Msa0097950:CDS
AAGAACAGCAGAAAATGTTC+GGG 0.470152 1_3:-3831678 Msa0097950:CDS
GATGCAATGATGCAGATAGA+AGG 0.470608 1_3:-3830719 Msa0097950:three_prime_UTR
GGTATAATGCCGGACTTTGA+GGG 0.472480 1_3:-3830776 Msa0097950:three_prime_UTR
CGGTCTTGAGCAGGATTGAC+AGG 0.472577 1_3:-3833019 Msa0097950:CDS
ACCAATATCAATGAACTCTT+GGG 0.480786 1_3:+3832127 None:intergenic
TGTGTCCAGGCATCTACCCT+TGG 0.481656 1_3:-3832981 Msa0097950:intron
AGGGATCTTGCAGAAGAATT+GGG 0.486944 1_3:-3832783 Msa0097950:intron
TCAAAGTCACCCCTGAAGCT+AGG 0.492751 1_3:-3832803 Msa0097950:CDS
CCGGTTGATTATGCGAAGAA+AGG 0.495046 1_3:-3832074 Msa0097950:CDS
AAAGAAAGAATCTGCGGATG+AGG 0.496199 1_3:-3832679 Msa0097950:CDS
AATAACCTTGACTTCCAAAA+CGG 0.496574 1_3:+3833888 None:intergenic
CATTGAGAATAACCATAAAC+CGG 0.497395 1_3:-3832093 Msa0097950:CDS
GTATGTAAGCTTCTCGGTCA+TGG 0.499658 1_3:+3834026 None:intergenic
CTTGGATCCTCTGGCCAAAA+GGG 0.500718 1_3:-3830645 Msa0097950:three_prime_UTR
ATTTAATATTTCAGTGGTGA+AGG 0.501321 1_3:-3834093 Msa0097950:intron
CGGTTGATTATGCGAAGAAA+GGG 0.505603 1_3:-3832073 Msa0097950:CDS
ATTGGACGATTTCTGTTCAA+AGG 0.509473 1_3:+3830286 None:intergenic
CGAAGTTCCTTCATTGGATG+AGG 0.509629 1_3:+3833671 None:intergenic
ATACACATCTGTGGTATACA+TGG 0.512971 1_3:-3830583 Msa0097950:three_prime_UTR
ACGTGGAGTCGGTCTTGAGC+AGG 0.513755 1_3:-3833028 Msa0097950:CDS
ATATCAACTCCCAAAACAAT+CGG 0.514889 1_3:+3832600 None:intergenic
GGCCAGAGGATCCAAGCTGC+AGG 0.515164 1_3:+3830652 None:intergenic
ACTTCTATGCTCCTGCAGCT+TGG 0.517762 1_3:-3830663 Msa0097950:three_prime_UTR
CGTCTGTGTAGTGTGAGAGC+TGG 0.518847 1_3:-3830318 Msa0097950:three_prime_UTR
TGCTGGAGCTAGTTTATATG+TGG 0.519781 1_3:-3833099 Msa0097950:CDS
GTCACTCAGTTCAAGGAACA+AGG 0.521657 1_3:-3834836 Msa0097950:five_prime_UTR
CCTGTTAGTGCTATAAACAT+AGG 0.522577 1_3:-3832909 Msa0097950:CDS
ATTGACACCTCATCCAATGA+AGG 0.523422 1_3:-3833678 Msa0097950:CDS
TACATACAGCGAAGAAGTGC+AGG 0.526176 1_3:-3834010 Msa0097950:intron
CAAAGTCACCCCTGAAGCTA+GGG 0.528771 1_3:-3832802 Msa0097950:CDS
TTAATGGTGTTCTTCATGAA+GGG 0.534561 1_3:-3833831 Msa0097950:CDS
GACTATGGAGGAATGGAAGC+TGG 0.535656 1_3:-3830902 Msa0097950:CDS
TGAGAGAAAGCAAATATTCA+CGG 0.537618 1_3:-3830527 Msa0097950:three_prime_UTR
GTCAAGGTTATTGAAGGCCA+TGG 0.537843 1_3:-3833877 Msa0097950:CDS
TCACATCCTTCTTGTGTACA+GGG 0.538962 1_3:+3832886 None:intergenic
AAAGAAATCAAAGCTGCTAT+GGG 0.542406 1_3:-3833275 Msa0097950:CDS
GGGAATCAAGATCACTGCCC+AGG 0.545100 1_3:-3833255 Msa0097950:intron
ATGATCTGACTATGGAGGAA+TGG 0.553038 1_3:-3830909 Msa0097950:CDS
CTAATAGTAATAACATATCC+GGG 0.555274 1_3:+3834067 None:intergenic
CAACATCAATAGTAGTTCCA+TGG 0.556648 1_3:+3833860 None:intergenic
TGTTATTACTATTAGTTCAG+TGG 0.560033 1_3:-3834059 Msa0097950:CDS
CATAGGCCCTGTACACAAGA+AGG 0.561171 1_3:-3832892 Msa0097950:CDS
TTTCAGTGGTGAAGGAATCC+CGG 0.561971 1_3:-3834085 Msa0097950:intron
TGCTTTCTCTCATCGAACAA+AGG 0.562604 1_3:+3830538 None:intergenic
CAAAACCAAAATGCAAAGCA+TGG 0.562929 1_3:+3830432 None:intergenic
TGAAATGTTCGGTATAATGC+CGG 0.564900 1_3:-3830786 Msa0097950:three_prime_UTR
GGTAAGATCTTCAGAACACA+TGG 0.572020 1_3:+3832648 None:intergenic
ACACAAGAAGGATGTGATGA+AGG 0.572047 1_3:-3832880 Msa0097950:CDS
ATATCAATGAACTCTTGGGA+AGG 0.576746 1_3:+3832131 None:intergenic
TATCAATGAACTCTTGGGAA+GGG 0.579843 1_3:+3832132 None:intergenic
GGCCAAAAGGGTAACTGTCA+AGG 0.582961 1_3:-3830633 Msa0097950:three_prime_UTR
AGGATTGACAGGAGTGGTGA+GGG 0.584013 1_3:-3833008 Msa0097950:CDS
TGATTTACTATACACATCTG+TGG 0.586356 1_3:-3830592 Msa0097950:three_prime_UTR
TAATGGTGTTCTTCATGAAG+GGG 0.587624 1_3:-3833830 Msa0097950:CDS
TTTATGGTTATTCTCAATGG+AGG 0.590292 1_3:+3832097 None:intergenic
TGCAAGATCCCTAGCTTCAG+GGG 0.591230 1_3:+3832794 None:intergenic
AGCTTTGGAAGACGTGGAGT+CGG 0.591536 1_3:-3833039 Msa0097950:CDS
GAGAGAAAGCAAATATTCAC+GGG 0.592615 1_3:-3830526 Msa0097950:three_prime_UTR
TCTGCATCATTGCATCTACA+AGG 0.602418 1_3:+3830726 None:intergenic
CAGGATTGACAGGAGTGGTG+AGG 0.604875 1_3:-3833009 Msa0097950:CDS
AAAGGCAGCTTTGGAAGACG+TGG 0.608385 1_3:-3833045 Msa0097950:CDS
ATAATGCTTCCAATGAGCCA+AGG 0.611270 1_3:+3832964 None:intergenic
GTTTCTTGTACAAGTCACTC+TGG 0.621796 1_3:+3830684 None:intergenic
AAATTGTGTCTTCAACAAGA+AGG 0.623805 1_3:-3832625 Msa0097950:CDS
AACAGCAGAAAATGTTCGGG+AGG 0.628525 1_3:-3831675 Msa0097950:CDS
TAATGCTTCCAATGAGCCAA+GGG 0.629489 1_3:+3832965 None:intergenic
TGTCAATAAAGCTCGAATTG+TGG 0.631490 1_3:+3833694 None:intergenic
ATAGGATGATCTGACTATGG+AGG 0.643473 1_3:-3830914 Msa0097950:intron
GTATTCATTAAAGATAAACA+AGG 0.654702 1_3:-3830816 Msa0097950:three_prime_UTR
AGGGTAACTGTCAAGGACGA+AGG 0.664505 1_3:-3830626 Msa0097950:three_prime_UTR
TTGAGCAGGATTGACAGGAG+TGG 0.672991 1_3:-3833014 Msa0097950:CDS
TCACTCAGTTCAAGGAACAA+GGG 0.682333 1_3:-3834835 Msa0097950:five_prime_UTR
TTACATGGACAACATTAAGG+AGG 0.709891 1_3:-3832706 Msa0097950:CDS
GTAAGATCTTCAGAACACAT+GGG 0.723306 1_3:+3832649 None:intergenic
TATGGAGGAATGGAAGCTGG+TGG 0.758669 1_3:-3830899 Msa0097950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAATAAAGTTTATAATAT+AGG - chr1_3:3831340-3831359 Msa0097950:intron 10.0%
!! CTAATAAAGTTTATAATATA+GGG - chr1_3:3831341-3831360 Msa0097950:intron 10.0%
!!! AATTAGCAATTTTATATTTA+TGG - chr1_3:3832665-3832684 Msa0097950:CDS 10.0%
!!! CATACATATTTTTTTTAATA+TGG - chr1_3:3833668-3833687 Msa0097950:CDS 10.0%
!!! TTAATAATATACATTTTTTG+TGG - chr1_3:3833893-3833912 Msa0097950:CDS 10.0%
!! TATTACAAAAACAAAGAAAT+GGG - chr1_3:3830272-3830291 Msa0097950:three_prime_UTR 15.0%
!! AAATAATTGATGTAAAATGT+AGG + chr1_3:3830654-3830673 None:intergenic 15.0%
!!! TTTTACATCAATTATTTTGT+TGG - chr1_3:3830657-3830676 Msa0097950:three_prime_UTR 15.0%
!! TATATGTAATACTATAGTTA+TGG + chr1_3:3830912-3830931 None:intergenic 15.0%
!! TTTAGTATTTAATATTTCAG+TGG - chr1_3:3830970-3830989 Msa0097950:intron 15.0%
!!! TGATTTGGAATATATTAAAA+AGG - chr1_3:3832006-3832025 Msa0097950:intron 15.0%
!! AAAGAAATAAAAATGTATAG+AGG - chr1_3:3833306-3833325 Msa0097950:intron 15.0%
!! ATATTCTCAAAACTAATTAT+CGG - chr1_3:3833469-3833488 Msa0097950:intron 15.0%
!!! TATTTTTTTTAATATGGATG+AGG - chr1_3:3833674-3833693 Msa0097950:CDS 15.0%
!! ATTACTCATTTAACTATTAT+TGG - chr1_3:3834086-3834105 Msa0097950:intron 15.0%
!! AATTCACTAAAAGTAATTTA+GGG - chr1_3:3834833-3834852 Msa0097950:five_prime_UTR 15.0%
!! GTATTACAAAAACAAAGAAA+TGG - chr1_3:3830271-3830290 Msa0097950:three_prime_UTR 20.0%
!! ACTAATAGTAATAACATATC+CGG + chr1_3:3831006-3831025 None:intergenic 20.0%
!!! ATTGATGTTGTTTTAGTTAA+TGG - chr1_3:3831222-3831241 Msa0097950:intron 20.0%
!!! ATTTATTTTAAAGCTGGTTT+GGG - chr1_3:3831452-3831471 Msa0097950:intron 20.0%
!! TCATCTATTTGATCAATTTA+AGG - chr1_3:3832339-3832358 Msa0097950:intron 20.0%
!!! AATTTTATATTTATGGCCTA+TGG - chr1_3:3832672-3832691 Msa0097950:CDS 20.0%
!! TATTCTCAAAACTAATTATC+GGG - chr1_3:3833470-3833489 Msa0097950:intron 20.0%
!! TTGAAACTATGTAAAATAAG+TGG + chr1_3:3833839-3833858 None:intergenic 20.0%
!! TGTATATTATTAACCACTTT+CGG + chr1_3:3833886-3833905 None:intergenic 20.0%
!! TAAAAAATTGACCCAAAAAA+GGG - chr1_3:3834002-3834021 Msa0097950:intron 20.0%
!!! TAACTATTATTGGATTTTGT+TGG - chr1_3:3834096-3834115 Msa0097950:intron 20.0%
!! GTATTCATTAAAGATAAACA+AGG - chr1_3:3834253-3834272 Msa0097950:intron 20.0%
!! GTATAGTAAATCACAAAATT+TGG + chr1_3:3834470-3834489 None:intergenic 20.0%
!!! ATTTTCCATTTGTATACATT+TGG - chr1_3:3834610-3834629 Msa0097950:intron 20.0%
!! GAATTCACTAAAAGTAATTT+AGG - chr1_3:3834832-3834851 Msa0097950:five_prime_UTR 20.0%
! TGTAGCATTGTATTACAAAA+GGG - chr1_3:3830368-3830387 Msa0097950:three_prime_UTR 25.0%
!!! AATAGTGTTGACGATAATAT+AGG - chr1_3:3830592-3830611 Msa0097950:three_prime_UTR 25.0%
!!! TCAATTATTTTGTTGGTAAC+AGG - chr1_3:3830664-3830683 Msa0097950:three_prime_UTR 25.0%
!! TTTTCACTATCATTAGAAAG+AGG - chr1_3:3830720-3830739 Msa0097950:three_prime_UTR 25.0%
! ATTTAATATTTCAGTGGTGA+AGG - chr1_3:3830976-3830995 Msa0097950:intron 25.0%
! CTAATAGTAATAACATATCC+GGG + chr1_3:3831005-3831024 None:intergenic 25.0%
! TGTTATTACTATTAGTTCAG+TGG - chr1_3:3831010-3831029 Msa0097950:intron 25.0%
! CAAATAACAGTTAAACAGTT+AGG + chr1_3:3831143-3831162 None:intergenic 25.0%
! AAAGCAAGTATTAATACATG+TGG + chr1_3:3831311-3831330 None:intergenic 25.0%
! ATCGAATGCAAAAGATATAA+TGG + chr1_3:3831434-3831453 None:intergenic 25.0%
!!! CATTCGATTTATTTTAAAGC+TGG - chr1_3:3831446-3831465 Msa0097950:intron 25.0%
!!! GATTTATTTTAAAGCTGGTT+TGG - chr1_3:3831451-3831470 Msa0097950:intron 25.0%
! AAGGGATTTAGAAATTTGAA+TGG - chr1_3:3831482-3831501 Msa0097950:intron 25.0%
! AGGGATTTAGAAATTTGAAT+GGG - chr1_3:3831483-3831502 Msa0097950:intron 25.0%
! TTATGAGATGTTTAACATGA+AGG - chr1_3:3831553-3831572 Msa0097950:intron 25.0%
!! ATTTTTCCATCATTGGAATT+TGG - chr1_3:3831636-3831655 Msa0097950:intron 25.0%
!! AATTTGGAATATGTCAATTG+AGG - chr1_3:3831652-3831671 Msa0097950:CDS 25.0%
!! ATTTGGAATATGTCAATTGA+GGG - chr1_3:3831653-3831672 Msa0097950:CDS 25.0%
! ATCAATATCATTAAGTACCT+GGG + chr1_3:3831834-3831853 None:intergenic 25.0%
! AAAACCATAGTTATATAGAC+TGG + chr1_3:3831869-3831888 None:intergenic 25.0%
!!! ATATGATTTCTTGCTATTTC+AGG - chr1_3:3831931-3831950 Msa0097950:intron 25.0%
!!! TATGATTTCTTGCTATTTCA+GGG - chr1_3:3831932-3831951 Msa0097950:intron 25.0%
! ATATATTCCAAATCATCATC+AGG + chr1_3:3832001-3832020 None:intergenic 25.0%
! ATATATTAAAAAGGCAGCTT+TGG - chr1_3:3832015-3832034 Msa0097950:intron 25.0%
! CAACTAATGAATTTATACCA+AGG + chr1_3:3832607-3832626 None:intergenic 25.0%
!! AAATGAGGAGATAGAAATTT+TGG - chr1_3:3832718-3832737 Msa0097950:CDS 25.0%
!! AACATTTTTACTGTATCAGA+AGG + chr1_3:3832760-3832779 None:intergenic 25.0%
! TATCTCAAACTTCGTTTAAT+GGG + chr1_3:3833101-3833120 None:intergenic 25.0%
! ATATCTCAAACTTCGTTTAA+TGG + chr1_3:3833102-3833121 None:intergenic 25.0%
!! ATTAAACGAAGTTTGAGATA+TGG - chr1_3:3833101-3833120 Msa0097950:CDS 25.0%
! TGAAATTTATGTTCCAAAAG+TGG + chr1_3:3833773-3833792 None:intergenic 25.0%
!! AAAAAATTCACAGAAGTACA+TGG - chr1_3:3833857-3833876 Msa0097950:CDS 25.0%
!! AAAATACTCCTCTTTTTCTT+AGG - chr1_3:3833966-3833985 Msa0097950:intron 25.0%
!! AAATACTCCTCTTTTTCTTA+GGG - chr1_3:3833967-3833986 Msa0097950:intron 25.0%
!!! TTTTTTTCCCTAAGAAAAAG+AGG + chr1_3:3833977-3833996 None:intergenic 25.0%
! GTAAAAAATTGACCCAAAAA+AGG - chr1_3:3834001-3834020 Msa0097950:intron 25.0%
! GTTAAATGAGTAATGATAAC+TGG + chr1_3:3834080-3834099 None:intergenic 25.0%
! TACCATTGAATTATTGACAT+AGG - chr1_3:3834137-3834156 Msa0097950:intron 25.0%
! ATCCTATGTCAATAATTCAA+TGG + chr1_3:3834142-3834161 None:intergenic 25.0%
! TTTAGTGAATTCAAACTATC+AGG + chr1_3:3834824-3834843 None:intergenic 25.0%
AATACAATGCTACACAAAAG+AGG + chr1_3:3830362-3830381 None:intergenic 30.0%
GTGTAGCATTGTATTACAAA+AGG - chr1_3:3830367-3830386 Msa0097950:three_prime_UTR 30.0%
GTAGGCATCTTAAAAAATGT+AGG + chr1_3:3830636-3830655 None:intergenic 30.0%
AGACAAGTTAGACACAATTT+GGG + chr1_3:3830808-3830827 None:intergenic 30.0%
TCATCCAAAGGATGATAATT+TGG - chr1_3:3830843-3830862 Msa0097950:three_prime_UTR 30.0%
! TGAATGCCAAATCTTTGTTT+CGG - chr1_3:3830879-3830898 Msa0097950:CDS 30.0%
TAATCTGCTGAATACTTTGT+CGG - chr1_3:3830930-3830949 Msa0097950:intron 30.0%
! GTTTAACTGTTATTTGACTG+TGG - chr1_3:3831147-3831166 Msa0097950:intron 30.0%
AATAACCTTGACTTCCAAAA+CGG + chr1_3:3831184-3831203 None:intergenic 30.0%
TTAATGGTGTTCTTCATGAA+GGG - chr1_3:3831238-3831257 Msa0097950:intron 30.0%
TAGAAATTTGAATGGGTCAA+TGG - chr1_3:3831490-3831509 Msa0097950:intron 30.0%
AAATAACGTGTTAGAAGCTT+AGG - chr1_3:3831524-3831543 Msa0097950:intron 30.0%
!! CAACTATACTTGCTATAACT+TGG + chr1_3:3831581-3831600 None:intergenic 30.0%
CATATTCCAAATTCCAATGA+TGG + chr1_3:3831645-3831664 None:intergenic 30.0%
! TTTGGAATATGTCAATTGAG+GGG - chr1_3:3831654-3831673 Msa0097950:CDS 30.0%
AAATATAGCTCCTCTGTTAA+AGG + chr1_3:3831709-3831728 None:intergenic 30.0%
AGTAATGGTTGTCTAATTTC+AGG - chr1_3:3831754-3831773 Msa0097950:intron 30.0%
GTAATGGTTGTCTAATTTCA+GGG - chr1_3:3831755-3831774 Msa0097950:intron 30.0%
AAAGAAATCAAAGCTGCTAT+GGG - chr1_3:3831794-3831813 Msa0097950:intron 30.0%
GATCAATATCATTAAGTACC+TGG + chr1_3:3831835-3831854 None:intergenic 30.0%
TATGCCAGTCTATATAACTA+TGG - chr1_3:3831862-3831881 Msa0097950:intron 30.0%
!! ATGATTTCTTGCTATTTCAG+GGG - chr1_3:3831933-3831952 Msa0097950:intron 30.0%
!! TTTCTTTTCAAGCATTACAC+TGG + chr1_3:3832215-3832234 None:intergenic 30.0%
! GGGTGTGAAAATTTTTATAG+CGG - chr1_3:3832306-3832325 Msa0097950:intron 30.0%
! TGATCAATTTAAGGCTTACA+TGG - chr1_3:3832348-3832367 Msa0097950:intron 30.0%
TTCTTGTTGAAGACACAATT+TGG + chr1_3:3832445-3832464 None:intergenic 30.0%
AAATTGTGTCTTCAACAAGA+AGG - chr1_3:3832444-3832463 Msa0097950:intron 30.0%
ATATCAACTCCCAAAACAAT+CGG + chr1_3:3832472-3832491 None:intergenic 30.0%
!!! TATCCTTGAAGGCATTTTAA+AGG - chr1_3:3832489-3832508 Msa0097950:intron 30.0%
!! ATACCTTTAAAATGCCTTCA+AGG + chr1_3:3832495-3832514 None:intergenic 30.0%
CTTGCATCTGTATTTGAAAA+AGG - chr1_3:3832642-3832661 Msa0097950:CDS 30.0%
! TGTTCAATGCACAATTTGTT+TGG - chr1_3:3832856-3832875 Msa0097950:CDS 30.0%
TCTGTCAAGTAGACAATATT+AGG + chr1_3:3832898-3832917 None:intergenic 30.0%
ATATTGTCTACTTGACAGAT+TGG - chr1_3:3832899-3832918 Msa0097950:CDS 30.0%
ACCAATATCAATGAACTCTT+GGG + chr1_3:3832945-3832964 None:intergenic 30.0%
TTTATGGTTATTCTCAATGG+AGG + chr1_3:3832975-3832994 None:intergenic 30.0%
CATTGAGAATAACCATAAAC+CGG - chr1_3:3832976-3832995 Msa0097950:intron 30.0%
AATTCAAGCACATACCTTAA+TGG + chr1_3:3833032-3833051 None:intergenic 30.0%
ATCTCAAACTTCGTTTAATG+GGG + chr1_3:3833100-3833119 None:intergenic 30.0%
!!! ATCCATTTTCACTGATTTAC+AGG - chr1_3:3833255-3833274 Msa0097950:intron 30.0%
AACTTGTAAGCCATATTTCA+CGG - chr1_3:3833436-3833455 Msa0097950:intron 30.0%
!!! ACGGTAACAGTACAATTTTT+TGG - chr1_3:3833620-3833639 Msa0097950:intron 30.0%
! TGGTTATGCTTTGCATTTTT+CGG + chr1_3:3833819-3833838 None:intergenic 30.0%
ACATATACCACACCTTTATA+CGG + chr1_3:3834037-3834056 None:intergenic 30.0%
! AAGGTTTTCAGTGAAATGTT+CGG - chr1_3:3834272-3834291 Msa0097950:intron 30.0%
TGATTTACTATACACATCTG+TGG - chr1_3:3834477-3834496 Msa0097950:intron 30.0%
TGAGAGAAAGCAAATATTCA+CGG - chr1_3:3834542-3834561 Msa0097950:intron 30.0%
GAACACCAAATGTATACAAA+TGG + chr1_3:3834618-3834637 None:intergenic 30.0%
!!! ATGCTTTGCATTTTGGTTTT+GGG - chr1_3:3834639-3834658 Msa0097950:intron 30.0%
AGTTACCTTATTGCACTTGT+AGG + chr1_3:3830317-3830336 None:intergenic 35.0%
!! AAAGAGGTATTATGGCTACA+AGG + chr1_3:3830346-3830365 None:intergenic 35.0%
!! GCTACACAAAAGAGGTATTA+TGG + chr1_3:3830354-3830373 None:intergenic 35.0%
ACCATATTGATGTTCCAGAT+GGG - chr1_3:3830424-3830443 Msa0097950:three_prime_UTR 35.0%
TTCATGTGACTAAAAAGCTG+TGG + chr1_3:3830482-3830501 None:intergenic 35.0%
TACATATGTAATCGCCTCAA+CGG + chr1_3:3830517-3830536 None:intergenic 35.0%
ACAATTCAACATCCTAGCAT+TGG + chr1_3:3830553-3830572 None:intergenic 35.0%
ACAAGTTAGACACAATTTGG+GGG + chr1_3:3830806-3830825 None:intergenic 35.0%
GACAAGTTAGACACAATTTG+GGG + chr1_3:3830807-3830826 None:intergenic 35.0%
CAGACAAGTTAGACACAATT+TGG + chr1_3:3830809-3830828 None:intergenic 35.0%
CCTACCAAATTATCATCCTT+TGG + chr1_3:3830850-3830869 None:intergenic 35.0%
CCAAAGGATGATAATTTGGT+AGG - chr1_3:3830847-3830866 Msa0097950:three_prime_UTR 35.0%
! GAATGCCAAATCTTTGTTTC+GGG - chr1_3:3830880-3830899 Msa0097950:CDS 35.0%
! TTTTGCCCGAAACAAAGATT+TGG + chr1_3:3830888-3830907 None:intergenic 35.0%
TTGGAAGTCAAGGTTATTGA+AGG - chr1_3:3831186-3831205 Msa0097950:intron 35.0%
CAACATCAATAGTAGTTCCA+TGG + chr1_3:3831212-3831231 None:intergenic 35.0%
GTTAATGGTGTTCTTCATGA+AGG - chr1_3:3831237-3831256 Msa0097950:intron 35.0%
TAATGGTGTTCTTCATGAAG+GGG - chr1_3:3831239-3831258 Msa0097950:intron 35.0%
! AATAGTTGTATCTGGAATGC+AGG - chr1_3:3831266-3831285 Msa0097950:intron 35.0%
TGTCAATAAAGCTCGAATTG+TGG + chr1_3:3831378-3831397 None:intergenic 35.0%
TTAACACGAAGTTCCTTCAT+TGG + chr1_3:3831407-3831426 None:intergenic 35.0%
AATGAAGGAACTTCGTGTTA+AGG - chr1_3:3831406-3831425 Msa0097950:intron 35.0%
!!! ATTTTAAAGCTGGTTTGGGT+AGG - chr1_3:3831456-3831475 Msa0097950:intron 35.0%
AAATTTGAATGGGTCAATGG+AGG - chr1_3:3831493-3831512 Msa0097950:intron 35.0%
CTCATATTGTTATGCTGAAG+AGG - chr1_3:3831608-3831627 Msa0097950:intron 35.0%
ATATTGTTATGCTGAAGAGG+TGG - chr1_3:3831611-3831630 Msa0097950:intron 35.0%
AATATGTCAATTGAGGGGAT+GGG - chr1_3:3831659-3831678 Msa0097950:CDS 35.0%
AAACATCCTCTTTAGTCTGA+GGG - chr1_3:3831682-3831701 Msa0097950:CDS 35.0%
TATGTCTTCCAGCTAAGTAA+TGG - chr1_3:3831739-3831758 Msa0097950:intron 35.0%
TTAGACAACCATTACTTAGC+TGG + chr1_3:3831750-3831769 None:intergenic 35.0%
! CAGCTTTGATTTCTTTGTGA+TGG + chr1_3:3831790-3831809 None:intergenic 35.0%
CAAAGAAATCAAAGCTGCTA+TGG - chr1_3:3831793-3831812 Msa0097950:intron 35.0%
CTAACAGGAATATTCACTTC+TGG + chr1_3:3832148-3832167 None:intergenic 35.0%
CCTATGTTTATAGCACTAAC+AGG + chr1_3:3832163-3832182 None:intergenic 35.0%
CCTGTTAGTGCTATAAACAT+AGG - chr1_3:3832160-3832179 Msa0097950:intron 35.0%
! ACGAGAGTATGCTACTATAT+TGG - chr1_3:3832234-3832253 Msa0097950:intron 35.0%
TTACATGGACAACATTAAGG+AGG - chr1_3:3832363-3832382 Msa0097950:intron 35.0%
GGAGAAAAAGAAAGAATCTG+CGG - chr1_3:3832384-3832403 Msa0097950:intron 35.0%
GTAAGATCTTCAGAACACAT+GGG + chr1_3:3832423-3832442 None:intergenic 35.0%
! AAGAAGGATCCGATTGTTTT+GGG - chr1_3:3832460-3832479 Msa0097950:intron 35.0%
! CAGATGAACTTGTTTCAATG+TGG - chr1_3:3832529-3832548 Msa0097950:intron 35.0%
TAAGATTGTATTGCTTGCCT+TGG - chr1_3:3832587-3832606 Msa0097950:CDS 35.0%
TATGGCCTATGGATAAGTTT+AGG - chr1_3:3832683-3832702 Msa0097950:CDS 35.0%
TGTGCATTGAACACATAACA+GGG + chr1_3:3832849-3832868 None:intergenic 35.0%
TTGTGCATTGAACACATAAC+AGG + chr1_3:3832850-3832869 None:intergenic 35.0%
TATCAATGAACTCTTGGGAA+GGG + chr1_3:3832940-3832959 None:intergenic 35.0%
ATATCAATGAACTCTTGGGA+AGG + chr1_3:3832941-3832960 None:intergenic 35.0%
TCCCAAGAGTTCATTGATAT+TGG - chr1_3:3832941-3832960 Msa0097950:CDS 35.0%
GACCAATATCAATGAACTCT+TGG + chr1_3:3832946-3832965 None:intergenic 35.0%
CGGTTTATGGTTATTCTCAA+TGG + chr1_3:3832978-3832997 None:intergenic 35.0%
!! AACTAACTTGTTTACACCGA+TGG - chr1_3:3833223-3833242 Msa0097950:intron 35.0%
!!! AATGGATGTCACTTTTCCAT+CGG + chr1_3:3833242-3833261 None:intergenic 35.0%
CACCTGTAAATCAGTGAAAA+TGG + chr1_3:3833260-3833279 None:intergenic 35.0%
!!! CATTTTCACTGATTTACAGG+TGG - chr1_3:3833258-3833277 Msa0097950:CDS 35.0%
GAAGAACAGCAGAAAATGTT+CGG - chr1_3:3833390-3833409 Msa0097950:intron 35.0%
AAGAACAGCAGAAAATGTTC+GGG - chr1_3:3833391-3833410 Msa0097950:intron 35.0%
CAATAGATCTCCGTGAAATA+TGG + chr1_3:3833449-3833468 None:intergenic 35.0%
GTGTTGAGTTATCATTACTC+TGG + chr1_3:3833552-3833571 None:intergenic 35.0%
CCTTAATGCAGTAGTGAAAT+TGG + chr1_3:3833730-3833749 None:intergenic 35.0%
CCAATTTCACTACTGCATTA+AGG - chr1_3:3833727-3833746 Msa0097950:intron 35.0%
TCGGGTTAATATAGTCAAAG+TGG + chr1_3:3833800-3833819 None:intergenic 35.0%
! GGTTATGCTTTGCATTTTTC+GGG + chr1_3:3833818-3833837 None:intergenic 35.0%
TGAAATGTTCGGTATAATGC+CGG - chr1_3:3834283-3834302 Msa0097950:intron 35.0%
ATACACATCTGTGGTATACA+TGG - chr1_3:3834486-3834505 Msa0097950:intron 35.0%
GAGAGAAAGCAAATATTCAC+GGG - chr1_3:3834543-3834562 Msa0097950:intron 35.0%
CAAAACCAAAATGCAAAGCA+TGG + chr1_3:3834640-3834659 None:intergenic 35.0%
!!! CATGCTTTGCATTTTGGTTT+TGG - chr1_3:3834638-3834657 Msa0097950:intron 35.0%
!!! TTGCATTTTGGTTTTGGGAA+CGG - chr1_3:3834644-3834663 Msa0097950:intron 35.0%
! TGCAGCATATACTTTTCACA+TGG - chr1_3:3834714-3834733 Msa0097950:intron 35.0%
ATTGGACGATTTCTGTTCAA+AGG + chr1_3:3834786-3834805 None:intergenic 35.0%
AGGACAGAAATTGTCATCAT+TGG + chr1_3:3834804-3834823 None:intergenic 35.0%
TCACTCAGTTCAAGGAACAA+GGG - chr1_3:3830234-3830253 Msa0097950:three_prime_UTR 40.0%
TTGTGCCTACAAGTGCAATA+AGG - chr1_3:3830309-3830328 Msa0097950:three_prime_UTR 40.0%
!! ATCAATATGGTGGTTGGTAG+GGG + chr1_3:3830415-3830434 None:intergenic 40.0%
! CATCAATATGGTGGTTGGTA+GGG + chr1_3:3830416-3830435 None:intergenic 40.0%
ACATCAATATGGTGGTTGGT+AGG + chr1_3:3830417-3830436 None:intergenic 40.0%
TGGAACATCAATATGGTGGT+TGG + chr1_3:3830421-3830440 None:intergenic 40.0%
! CATCTGGAACATCAATATGG+TGG + chr1_3:3830425-3830444 None:intergenic 40.0%
CACCATATTGATGTTCCAGA+TGG - chr1_3:3830423-3830442 Msa0097950:three_prime_UTR 40.0%
! TCCCATCTGGAACATCAATA+TGG + chr1_3:3830428-3830447 None:intergenic 40.0%
GGAAAACAAAATCTCCCATC+TGG + chr1_3:3830441-3830460 None:intergenic 40.0%
AAAGCTGTGGATTTGAGTCT+TGG + chr1_3:3830469-3830488 None:intergenic 40.0%
! TCTTTTGTAGTGCCAATGCT+AGG - chr1_3:3830538-3830557 Msa0097950:three_prime_UTR 40.0%
!! CAGAACATCTCAGCTTTGTT+TGG - chr1_3:3830777-3830796 Msa0097950:three_prime_UTR 40.0%
CTCTACGTGAAATCATCCAA+AGG - chr1_3:3830831-3830850 Msa0097950:three_prime_UTR 40.0%
TGATAATTTGGTAGGAGCAG+AGG - chr1_3:3830855-3830874 Msa0097950:exon 40.0%
TTCGCTGTATGTAAGCTTCT+CGG + chr1_3:3831052-3831071 None:intergenic 40.0%
ACCACTTCAACATCAAGTGA+TGG + chr1_3:3831089-3831108 None:intergenic 40.0%
GGGGATCAAATAGTTGTATC+TGG - chr1_3:3831258-3831277 Msa0097950:intron 40.0%
GCTCGAATTGTGGTAACAAT+TGG + chr1_3:3831368-3831387 None:intergenic 40.0%
ATTGACACCTCATCCAATGA+AGG - chr1_3:3831391-3831410 Msa0097950:intron 40.0%
!!! GGTGGTCATTTTTCCATCAT+TGG - chr1_3:3831629-3831648 Msa0097950:intron 40.0%
GAATATGTCAATTGAGGGGA+TGG - chr1_3:3831658-3831677 Msa0097950:CDS 40.0%
GAAACATCCTCTTTAGTCTG+AGG - chr1_3:3831681-3831700 Msa0097950:CDS 40.0%
AACATCCTCTTTAGTCTGAG+GGG - chr1_3:3831683-3831702 Msa0097950:CDS 40.0%
! TGCTGGAGCTAGTTTATATG+TGG - chr1_3:3831970-3831989 Msa0097950:intron 40.0%
! GGTAAAGCCTGATGATGATT+TGG - chr1_3:3831991-3832010 Msa0097950:intron 40.0%
TAATGCTTCCAATGAGCCAA+GGG + chr1_3:3832107-3832126 None:intergenic 40.0%
ATAATGCTTCCAATGAGCCA+AGG + chr1_3:3832108-3832127 None:intergenic 40.0%
!! TGGCTCATTGGAAGCATTAT+TGG - chr1_3:3832108-3832127 Msa0097950:CDS 40.0%
TCACATCCTTCTTGTGTACA+GGG + chr1_3:3832186-3832205 None:intergenic 40.0%
ATCACATCCTTCTTGTGTAC+AGG + chr1_3:3832187-3832206 None:intergenic 40.0%
ACACAAGAAGGATGTGATGA+AGG - chr1_3:3832189-3832208 Msa0097950:intron 40.0%
TAGGGATCTTGCAGAAGAAT+TGG - chr1_3:3832285-3832304 Msa0097950:intron 40.0%
AGGGATCTTGCAGAAGAATT+GGG - chr1_3:3832286-3832305 Msa0097950:intron 40.0%
GGCTTACATGGACAACATTA+AGG - chr1_3:3832360-3832379 Msa0097950:intron 40.0%
AAAGAAAGAATCTGCGGATG+AGG - chr1_3:3832390-3832409 Msa0097950:intron 40.0%
GGTAAGATCTTCAGAACACA+TGG + chr1_3:3832424-3832443 None:intergenic 40.0%
! CAAGAAGGATCCGATTGTTT+TGG - chr1_3:3832459-3832478 Msa0097950:intron 40.0%
!! TTGGGAGTTGATATCCTTGA+AGG - chr1_3:3832478-3832497 Msa0097950:intron 40.0%
AGCAGCCTAAACTTATCCAT+AGG + chr1_3:3832691-3832710 None:intergenic 40.0%
TCTTGGGAAGGGATACAAAT+TGG + chr1_3:3832929-3832948 None:intergenic 40.0%
! TCGCATAATCAACCGGTTTA+TGG + chr1_3:3832991-3833010 None:intergenic 40.0%
CCTTTCTTCGCATAATCAAC+CGG + chr1_3:3832998-3833017 None:intergenic 40.0%
CGGTTGATTATGCGAAGAAA+GGG - chr1_3:3832996-3833015 Msa0097950:intron 40.0%
GTACTATGATTGAGCGATGT+TGG - chr1_3:3833142-3833161 Msa0097950:intron 40.0%
ATGATTGAGCGATGTTGGAA+AGG - chr1_3:3833147-3833166 Msa0097950:intron 40.0%
AGGTGGTCTATCTTTAGACT+TGG - chr1_3:3833275-3833294 Msa0097950:CDS 40.0%
CAACTTCGTTTGCAGATTGT+TGG - chr1_3:3833357-3833376 Msa0097950:intron 40.0%
TAAGCATGGTGAACAGTCAT+TGG + chr1_3:3833599-3833618 None:intergenic 40.0%
GACTGTTCACCATGCTTATA+CGG - chr1_3:3833601-3833620 Msa0097950:intron 40.0%
GTACTGTTACCGTATAAGCA+TGG + chr1_3:3833613-3833632 None:intergenic 40.0%
AAGTACATGGATTCCGAAAG+TGG - chr1_3:3833870-3833889 Msa0097950:CDS 40.0%
GGTTAATGAAGTCGCGAAAT+TGG - chr1_3:3833914-3833933 Msa0097950:intron 40.0%
!!! GGTGAACAGTACCCTTTTTT+GGG + chr1_3:3834016-3834035 None:intergenic 40.0%
GACATAGGATGATCTGACTA+TGG - chr1_3:3834152-3834171 Msa0097950:intron 40.0%
ATAGGATGATCTGACTATGG+AGG - chr1_3:3834155-3834174 Msa0097950:intron 40.0%
ATGATCTGACTATGGAGGAA+TGG - chr1_3:3834160-3834179 Msa0097950:intron 40.0%
CACAAAAATCCCTCAAAGTC+CGG + chr1_3:3834305-3834324 None:intergenic 40.0%
!! GACTTTGAGGGATTTTTGTG+AGG - chr1_3:3834305-3834324 Msa0097950:intron 40.0%
! ATTTTTGTGAGGATGCGGTT+GGG - chr1_3:3834316-3834335 Msa0097950:intron 40.0%
TCTGCATCATTGCATCTACA+AGG + chr1_3:3834346-3834365 None:intergenic 40.0%
GATGCAATGATGCAGATAGA+AGG - chr1_3:3834350-3834369 Msa0097950:intron 40.0%
GTTTCTTGTACAAGTCACTC+TGG + chr1_3:3834388-3834407 None:intergenic 40.0%
TGCTTTCTCTCATCGAACAA+AGG + chr1_3:3834534-3834553 None:intergenic 40.0%
! GTGTTCCATGCTTTGCATTT+TGG - chr1_3:3834632-3834651 Msa0097950:intron 40.0%
!!! TGCATTTTGGTTTTGGGAAC+GGG - chr1_3:3834645-3834664 Msa0097950:intron 40.0%
CATAGGTATGCATGCTTGTT+TGG - chr1_3:3834668-3834687 Msa0097950:intron 40.0%
GTCACTCAGTTCAAGGAACA+AGG - chr1_3:3830233-3830252 Msa0097950:three_prime_UTR 45.0%
TTGGTAGGGGTAAAATGGAG+GGG + chr1_3:3830402-3830421 None:intergenic 45.0%
! GTTGGTAGGGGTAAAATGGA+GGG + chr1_3:3830403-3830422 None:intergenic 45.0%
TGGATTTGAGTCTTGGATGC+AGG + chr1_3:3830462-3830481 None:intergenic 45.0%
TTTCAGTGGTGAAGGAATCC+CGG - chr1_3:3830984-3831003 Msa0097950:intron 45.0%
! CTTCTCGGTCATGGTCTTTT+GGG + chr1_3:3831037-3831056 None:intergenic 45.0%
GTATGTAAGCTTCTCGGTCA+TGG + chr1_3:3831046-3831065 None:intergenic 45.0%
! TACATACAGCGAAGAAGTGC+AGG - chr1_3:3831059-3831078 Msa0097950:intron 45.0%
GCCATCACTTGATGTTGAAG+TGG - chr1_3:3831085-3831104 Msa0097950:intron 45.0%
TGACTTCCAAAACGGTACAC+TGG + chr1_3:3831176-3831195 None:intergenic 45.0%
!!! GTGTACCGTTTTGGAAGTCA+AGG - chr1_3:3831176-3831195 Msa0097950:intron 45.0%
GTCAAGGTTATTGAAGGCCA+TGG - chr1_3:3831192-3831211 Msa0097950:intron 45.0%
CGAAGTTCCTTCATTGGATG+AGG + chr1_3:3831401-3831420 None:intergenic 45.0%
!! AGCTGGTTTGGGTAGGAAAA+AGG - chr1_3:3831463-3831482 Msa0097950:intron 45.0%
!! GCTGGTTTGGGTAGGAAAAA+GGG - chr1_3:3831464-3831483 Msa0097950:intron 45.0%
TGGATAAGTTTAGGCTGCTG+CGG - chr1_3:3832692-3832711 Msa0097950:CDS 45.0%
CCGGTTGATTATGCGAAGAA+AGG - chr1_3:3832995-3833014 Msa0097950:intron 45.0%
AGGGCAGAAAGTAGCCATTA+AGG - chr1_3:3833015-3833034 Msa0097950:CDS 45.0%
AACAGCAGAAAATGTTCGGG+AGG - chr1_3:3833394-3833413 Msa0097950:intron 45.0%
! TGTACGCTGTTGACCACTTT+TGG - chr1_3:3833757-3833776 Msa0097950:intron 45.0%
!!! CGGTGAACAGTACCCTTTTT+TGG + chr1_3:3834017-3834036 None:intergenic 45.0%
! GGGTACTGTTCACCGTATAA+AGG - chr1_3:3834022-3834041 Msa0097950:CDS 45.0%
CTGTTCACCGTATAAAGGTG+TGG - chr1_3:3834027-3834046 Msa0097950:CDS 45.0%
GGTATAATGCCGGACTTTGA+GGG - chr1_3:3834293-3834312 Msa0097950:intron 45.0%
! GAGGGATTTTTGTGAGGATG+CGG - chr1_3:3834311-3834330 Msa0097950:intron 45.0%
! GATTTTTGTGAGGATGCGGT+TGG - chr1_3:3834315-3834334 Msa0097950:intron 45.0%
! GTCCTTGACAGTTACCCTTT+TGG + chr1_3:3834441-3834460 None:intergenic 45.0%
!! GGTTGGTAGGGGTAAAATGG+AGG + chr1_3:3830404-3830423 None:intergenic 50.0%
!! GGTGGTTGGTAGGGGTAAAA+TGG + chr1_3:3830407-3830426 None:intergenic 50.0%
AAAACAACCCCAAGCCGTTG+AGG - chr1_3:3830500-3830519 Msa0097950:three_prime_UTR 50.0%
TGTAATCGCCTCAACGGCTT+GGG + chr1_3:3830511-3830530 None:intergenic 50.0%
ATGTAATCGCCTCAACGGCT+TGG + chr1_3:3830512-3830531 None:intergenic 50.0%
! GCTTCTCGGTCATGGTCTTT+TGG + chr1_3:3831038-3831057 None:intergenic 50.0%
! TGGCTACCAGTGTACCGTTT+TGG - chr1_3:3831167-3831186 Msa0097950:intron 50.0%
AAAGGCCCCTCAGACTAAAG+AGG + chr1_3:3831691-3831710 None:intergenic 50.0%
GGGCTTGAACATGCTATTGC+TGG - chr1_3:3831953-3831972 Msa0097950:intron 50.0%
!! AAAGGCAGCTTTGGAAGACG+TGG - chr1_3:3832024-3832043 Msa0097950:intron 50.0%
!! AGCTTTGGAAGACGTGGAGT+CGG - chr1_3:3832030-3832049 Msa0097950:intron 50.0%
TTGAGCAGGATTGACAGGAG+TGG - chr1_3:3832055-3832074 Msa0097950:CDS 50.0%
AGGATTGACAGGAGTGGTGA+GGG - chr1_3:3832061-3832080 Msa0097950:CDS 50.0%
CATAGGCCCTGTACACAAGA+AGG - chr1_3:3832177-3832196 Msa0097950:intron 50.0%
TCAAAGTCACCCCTGAAGCT+AGG - chr1_3:3832266-3832285 Msa0097950:intron 50.0%
CAAAGTCACCCCTGAAGCTA+GGG - chr1_3:3832267-3832286 Msa0097950:intron 50.0%
TGCAAGATCCCTAGCTTCAG+GGG + chr1_3:3832278-3832297 None:intergenic 50.0%
CTGCAAGATCCCTAGCTTCA+GGG + chr1_3:3832279-3832298 None:intergenic 50.0%
TCTGCAAGATCCCTAGCTTC+AGG + chr1_3:3832280-3832299 None:intergenic 50.0%
AGGCTGCTGCGGTTAAAATG+AGG - chr1_3:3832703-3832722 Msa0097950:CDS 50.0%
GACTATGGAGGAATGGAAGC+TGG - chr1_3:3834167-3834186 Msa0097950:intron 50.0%
TATGGAGGAATGGAAGCTGG+TGG - chr1_3:3834170-3834189 Msa0097950:intron 50.0%
CGGTATAATGCCGGACTTTG+AGG - chr1_3:3834292-3834311 Msa0097950:intron 50.0%
ACTTCTATGCTCCTGCAGCT+TGG - chr1_3:3834406-3834425 Msa0097950:intron 50.0%
CTTGGATCCTCTGGCCAAAA+GGG - chr1_3:3834424-3834443 Msa0097950:intron 50.0%
! ACAGTTACCCTTTTGGCCAG+AGG + chr1_3:3834434-3834453 None:intergenic 50.0%
GGCCAAAAGGGTAACTGTCA+AGG - chr1_3:3834436-3834455 Msa0097950:intron 50.0%
AGGGTAACTGTCAAGGACGA+AGG - chr1_3:3834443-3834462 Msa0097950:intron 50.0%
!!! TTGGTTTTGGGAACGGGCAT+AGG - chr1_3:3834651-3834670 Msa0097950:intron 50.0%
GTAATCGCCTCAACGGCTTG+GGG + chr1_3:3830510-3830529 None:intergenic 55.0%
GTCTGAGGGGCCTTTAACAG+AGG - chr1_3:3831696-3831715 Msa0097950:CDS 55.0%
GGGAATCAAGATCACTGCCC+AGG - chr1_3:3831814-3831833 Msa0097950:intron 55.0%
CGGTCTTGAGCAGGATTGAC+AGG - chr1_3:3832050-3832069 Msa0097950:intron 55.0%
CAGGATTGACAGGAGTGGTG+AGG - chr1_3:3832060-3832079 Msa0097950:CDS 55.0%
TGTGTCCAGGCATCTACCCT+TGG - chr1_3:3832088-3832107 Msa0097950:CDS 55.0%
ATGAGCCAAGGGTAGATGCC+TGG + chr1_3:3832096-3832115 None:intergenic 55.0%
GGCATCTACCCTTGGCTCAT+TGG - chr1_3:3832096-3832115 Msa0097950:CDS 55.0%
GCTTGGATCCTCTGGCCAAA+AGG - chr1_3:3834423-3834442 Msa0097950:intron 55.0%
CGTCTGTGTAGTGTGAGAGC+TGG - chr1_3:3834751-3834770 Msa0097950:intron 55.0%
ACGTGGAGTCGGTCTTGAGC+AGG - chr1_3:3832041-3832060 Msa0097950:intron 60.0%
!! TGGTGAGGGCGTTTGTGTCC+AGG - chr1_3:3832075-3832094 Msa0097950:CDS 60.0%
CTCCTGCAGCTTGGATCCTC+TGG - chr1_3:3834415-3834434 Msa0097950:intron 60.0%
GGCCAGAGGATCCAAGCTGC+AGG + chr1_3:3834420-3834439 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 3830228 3834863 3830228 ID=Msa0097950;Name=Msa0097950
chr1_3 mRNA 3830228 3834863 3830228 ID=Msa0097950-mRNA-1;Parent=Msa0097950;Name=Msa0097950-mRNA-1;_AED=0.09;_eAED=0.09;_QI=62|0.6|0.45|1|0.8|0.72|11|639|378
chr1_3 exon 3830228 3830932 3830228 ID=Msa0097950-mRNA-1:exon:1261;Parent=Msa0097950-mRNA-1
chr1_3 exon 3831651 3831719 3831651 ID=Msa0097950-mRNA-1:exon:1260;Parent=Msa0097950-mRNA-1
chr1_3 exon 3832055 3832174 3832055 ID=Msa0097950-mRNA-1:exon:1259;Parent=Msa0097950-mRNA-1
chr1_3 exon 3832581 3832765 3832581 ID=Msa0097950-mRNA-1:exon:1258;Parent=Msa0097950-mRNA-1
chr1_3 exon 3832784 3832994 3832784 ID=Msa0097950-mRNA-1:exon:1257;Parent=Msa0097950-mRNA-1
chr1_3 exon 3833007 3833138 3833007 ID=Msa0097950-mRNA-1:exon:1256;Parent=Msa0097950-mRNA-1
chr1_3 exon 3833256 3833315 3833256 ID=Msa0097950-mRNA-1:exon:1255;Parent=Msa0097950-mRNA-1
chr1_3 exon 3833664 3833729 3833664 ID=Msa0097950-mRNA-1:exon:1254;Parent=Msa0097950-mRNA-1
chr1_3 exon 3833819 3833914 3833819 ID=Msa0097950-mRNA-1:exon:1253;Parent=Msa0097950-mRNA-1
chr1_3 exon 3834011 3834101 3834011 ID=Msa0097950-mRNA-1:exon:1252;Parent=Msa0097950-mRNA-1
chr1_3 exon 3834761 3834863 3834761 ID=Msa0097950-mRNA-1:exon:1251;Parent=Msa0097950-mRNA-1
chr1_3 five_prime_UTR 3834802 3834863 3834802 ID=Msa0097950-mRNA-1:five_prime_utr;Parent=Msa0097950-mRNA-1
chr1_3 CDS 3834761 3834801 3834761 ID=Msa0097950-mRNA-1:cds;Parent=Msa0097950-mRNA-1
chr1_3 CDS 3834011 3834101 3834011 ID=Msa0097950-mRNA-1:cds;Parent=Msa0097950-mRNA-1
chr1_3 CDS 3833819 3833914 3833819 ID=Msa0097950-mRNA-1:cds;Parent=Msa0097950-mRNA-1
chr1_3 CDS 3833664 3833729 3833664 ID=Msa0097950-mRNA-1:cds;Parent=Msa0097950-mRNA-1
chr1_3 CDS 3833256 3833315 3833256 ID=Msa0097950-mRNA-1:cds;Parent=Msa0097950-mRNA-1
chr1_3 CDS 3833007 3833138 3833007 ID=Msa0097950-mRNA-1:cds;Parent=Msa0097950-mRNA-1
chr1_3 CDS 3832784 3832994 3832784 ID=Msa0097950-mRNA-1:cds;Parent=Msa0097950-mRNA-1
chr1_3 CDS 3832581 3832765 3832581 ID=Msa0097950-mRNA-1:cds;Parent=Msa0097950-mRNA-1
chr1_3 CDS 3832055 3832174 3832055 ID=Msa0097950-mRNA-1:cds;Parent=Msa0097950-mRNA-1
chr1_3 CDS 3831651 3831719 3831651 ID=Msa0097950-mRNA-1:cds;Parent=Msa0097950-mRNA-1
chr1_3 CDS 3830867 3830932 3830867 ID=Msa0097950-mRNA-1:cds;Parent=Msa0097950-mRNA-1
chr1_3 three_prime_UTR 3830228 3830866 3830228 ID=Msa0097950-mRNA-1:three_prime_utr;Parent=Msa0097950-mRNA-1
Gene Sequence

>Msa0097950

ATGGGCGAGACATTCAGCATTGTGCCTACAAGTGCAATAAGTGGTGAAGGAATCCCGGATATGTTATTACTATTAGTTCAGTGGACCCAAAAGACCATGACCGAGAAGCTTACATACAGCGAAGAAGTGCAGTGTACCGTTTTGGAAGTCAAGGTTATTGAAGGCCATGGAACTACTATTGATGTTGTTTTAGTTAATGGTGTTCTTCATGAAGGGGATCAAATAGTTGGTCCAATTGTTACCACAATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTTCGTGTTAAGGGATCATATATCCATCACAAAGAAATCAAAGCTGCTATGGGAATCAAGATCACTGCCCAGGGGCTTGAACATGCTATTGCTGGAGCTAGTTTATATGTGGTAAAGCCTGATGATGATTTGGAATATATTAAAAAGGCAGCTTTGGAAGACGTGGAGTCGGTCTTGAGCAGGATTGACAGGAGTGGTGAGGGCGCATCTACCCTTGGCTCATTGGAAGCATTATTGGAGTTTCTGAAAACTCCAGAAGTGAATATTCCTGTTAGTGCTATAAACATAGGCCCTGTACACAAGAAGGATGTGATGAAGGCCAGTGTAATGCTTGAAAAGAAACGAGAGTATGCTACTATATTGGCATTTGATGTCAAAGTCACCCCTGAAGCTAGGGATCTTGCAGAAGAATTGGCGGATATCATTTATCATCTATTTGATCAATTTAAGGCTTACATGGACAACATTAAGGAGGAGAAAAAGAAAGAATCTGCGGATGAGGCAGTCTTCCCATGTGTTCTGAAGATCTTACCAAATTGTGTCTTCAACAAGAAGGATCCGATTGTTTTGGGAGTTGATATCCTTGAAGGCATTTTAAAGATTGGAACTCCAATTTGTATCCCTTCCCAAGAGTTCATTGATATTGGTCGCATTGCCTCCATTGAGAATAACCATAAACCGGTTGATTATGCGAAGAAAGGGCAGAAAGTAGCCATTAAGATTGTTGGCAGCAATTCTGAAGAACAGCAGAAAATGTTCGGGAGGCATTTTGAGATTGATGATGAACTTGATGATCTGACTATGGAGGAATGGAAGCTGGTGGTTAAATTGAAGACTTTGTTCAAGATACAATAA

Protein sequence

>Msa0097950

MGETFSIVPTSAISGEGIPDMLLLLVQWTQKTMTEKLTYSEEVQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVGPIVTTIRALLTPHPMKELRVKGSYIHHKEIKAAMGIKITAQGLEHAIAGASLYVVKPDDDLEYIKKAALEDVESVLSRIDRSGEGASTLGSLEALLEFLKTPEVNIPVSAINIGPVHKKDVMKASVMLEKKREYATILAFDVKVTPEARDLAEELADIIYHLFDQFKAYMDNIKEEKKKESADEAVFPCVLKILPNCVFNKKDPIVLGVDILEGILKIGTPICIPSQEFIDIGRIASIENNHKPVDYAKKGQKVAIKIVGSNSEEQQKMFGRHFEIDDELDDLTMEEWKLVVKLKTLFKIQ*