Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980860 | XP_024625614.1 | 86.154 | 65 | 9 | 0 | 100 | 164 | 19 | 83 | 2.52e-32 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980860 | I3S9Y7 | 86.154 | 65 | 9 | 0 | 100 | 164 | 19 | 83 | 1.21e-32 | 120 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0814870 | Msa0980860 | -0.817399 | 3.364422e-52 | -8.615850e-47 |
| Msa0980860 | Msa1241130 | 0.819219 | 1.302980e-52 | -8.615850e-47 |
| Msa0901020 | Msa0980860 | -0.833361 | 5.573675e-56 | -8.615850e-47 |
| Msa0966770 | Msa0980860 | -0.802670 | 5.024088e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980860 | MtrunA17_Chr7g0268771 | 86.154 | 65 | 9 | 0 | 100 | 164 | 19 | 83 | 2.32e-36 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980860 | AT3G62920.1 | 61.538 | 65 | 24 | 1 | 100 | 164 | 17 | 80 | 4.45e-23 | 87.4 |
Find 66 sgRNAs with CRISPR-Local
Find 393 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTAAGAAGGCTTCACAATT+AGG | 0.220663 | 6_4:+19426629 | None:intergenic |
| ACTTCCAGGAATTCAATTTC+TGG | 0.278777 | 6_4:-19423097 | Msa0980860:CDS |
| TTGCTAAAGTAGTAGCTAAT+TGG | 0.309848 | 6_4:-19420644 | Msa0980860:CDS |
| AATTCACGGAAGAACGATTC+TGG | 0.319335 | 6_4:-19423070 | Msa0980860:CDS |
| TGTCCACAACAGACCTTTGC+AGG | 0.343311 | 6_4:+19424795 | None:intergenic |
| AGATGTCGAAACTGTGATTA+AGG | 0.348227 | 6_4:-19420742 | Msa0980860:CDS |
| TGAACCAGAAATTGAATTCC+TGG | 0.351878 | 6_4:+19423093 | None:intergenic |
| GTGCTGCAGCCTGGACCATT+AGG | 0.369826 | 6_4:-19420720 | Msa0980860:CDS |
| GTTACCTCTATAACGTTTGT+CGG | 0.405310 | 6_4:+19423034 | None:intergenic |
| GCCGAGTTCACCGCCGGTGA+AGG | 0.410161 | 6_4:+19427676 | None:intergenic |
| CCCTTCACCGGCGGTGAACT+CGG | 0.422442 | 6_4:-19427677 | Msa0980860:five_prime_UTR |
| TTATGCTCTATGATTCCTAA+TGG | 0.438145 | 6_4:+19420705 | None:intergenic |
| CAATTTCTGGTTCAAATTCA+CGG | 0.439712 | 6_4:-19423084 | Msa0980860:CDS |
| GCCGGTGAAGGGAGGGGATG+AGG | 0.441136 | 6_4:+19427688 | None:intergenic |
| ATAACCCTATGTGTTGTGTT+AGG | 0.454244 | 6_4:+19427612 | None:intergenic |
| CGGAAGAACGATTCTGGCTA+TGG | 0.468543 | 6_4:-19423064 | Msa0980860:CDS |
| GTGATTAAGGTGCTGCAGCC+TGG | 0.468735 | 6_4:-19420729 | Msa0980860:CDS |
| GCTACAATGTCAAATAGCTA+TGG | 0.477805 | 6_4:-19426463 | Msa0980860:CDS |
| TGAACTCGGCGGCAGGTCCA+TGG | 0.479481 | 6_4:-19427663 | Msa0980860:five_prime_UTR |
| CCGGCGGTGAACTCGGCGGC+AGG | 0.481243 | 6_4:-19427670 | Msa0980860:five_prime_UTR |
| TGTAGTTGTGGCGGCAGTTG+CGG | 0.482759 | 6_4:+19427528 | None:intergenic |
| TCCTCATCCCCTCCCTTCAC+CGG | 0.487697 | 6_4:-19427689 | Msa0980860:five_prime_UTR |
| ATCAGCCTCACTAAACTCTT+CGG | 0.499321 | 6_4:+19420674 | None:intergenic |
| TGTGGCGGCAGTTGCGGAGT+CGG | 0.504378 | 6_4:+19427534 | None:intergenic |
| ACGAAGGTCATTTGTAGTTG+TGG | 0.508783 | 6_4:+19427516 | None:intergenic |
| TCTTGGTGTGCAATGTAGCC+TGG | 0.510476 | 6_4:-19424846 | Msa0980860:CDS |
| CCGAGTTCACCGCCGGTGAA+GGG | 0.510818 | 6_4:+19427677 | None:intergenic |
| ATGGAAGGGTAAATAAAAGA+TGG | 0.512667 | 6_4:+19427750 | None:intergenic |
| CTACAATGTCAAATAGCTAT+GGG | 0.512852 | 6_4:-19426462 | Msa0980860:intron |
| TTATTCTTCGCACATCCCGC+TGG | 0.514511 | 6_4:-19427593 | Msa0980860:five_prime_UTR |
| TTCACCGCCGGTGAAGGGAG+GGG | 0.515249 | 6_4:+19427682 | None:intergenic |
| AGTTGTTAACAGCACCCTCC+AGG | 0.529761 | 6_4:+19424828 | None:intergenic |
| ACTTCTGTTTGTTCCTGCAA+AGG | 0.532169 | 6_4:-19424808 | Msa0980860:CDS |
| TTTCCCTTCAGAGAGTGCAT+TGG | 0.538107 | 6_4:-19426656 | Msa0980860:intron |
| CGATTCGGTTTCCTCCATTG+AGG | 0.538643 | 6_4:-19426599 | Msa0980860:intron |
| ATGAGGAAGGAAGAAGAGAG+AGG | 0.545508 | 6_4:+19427705 | None:intergenic |
| GTTCACCGCCGGTGAAGGGA+GGG | 0.547153 | 6_4:+19427681 | None:intergenic |
| AAAATTCAGAGAAAGACAGA+TGG | 0.547368 | 6_4:+19427731 | None:intergenic |
| AAGACTATATTCACAAGTGA+AGG | 0.550024 | 6_4:-19420578 | None:intergenic |
| GCAACCGACAAACGTTATAG+AGG | 0.554784 | 6_4:-19423038 | Msa0980860:intron |
| GTGAAGGGAGGGGATGAGGA+AGG | 0.560861 | 6_4:+19427692 | None:intergenic |
| TCTATGATTCCTAATGGTCC+AGG | 0.562116 | 6_4:+19420711 | None:intergenic |
| ATGACCTTCGTAACTGTCAC+CGG | 0.566185 | 6_4:-19427504 | Msa0980860:intron |
| GTTCCTGCAAAGGTCTGTTG+TGG | 0.571468 | 6_4:-19424798 | Msa0980860:CDS |
| TCGGCGAGATGTGCGTGGAT+CGG | 0.580720 | 6_4:+19427553 | None:intergenic |
| TTCAGAGAAAGACAGATGGA+AGG | 0.585621 | 6_4:+19427735 | None:intergenic |
| AGTTCACCGCCGGTGAAGGG+AGG | 0.586447 | 6_4:+19427680 | None:intergenic |
| GCAAAGAAATGCAACGCTTG+AGG | 0.592623 | 6_4:-19420622 | Msa0980860:CDS |
| GAATCGTCAGAAAAGTAAGA+AGG | 0.593294 | 6_4:+19426616 | None:intergenic |
| TCAGAGAAAGACAGATGGAA+GGG | 0.595171 | 6_4:+19427736 | None:intergenic |
| CCTGCCGCCGAGTTCACCGC+CGG | 0.598711 | 6_4:+19427670 | None:intergenic |
| CGGAGTCGGCGAGATGTGCG+TGG | 0.602009 | 6_4:+19427548 | None:intergenic |
| AGGACCTAACACAACACATA+GGG | 0.603430 | 6_4:-19427616 | Msa0980860:five_prime_UTR |
| TCATCCCCTCCCTTCACCGG+CGG | 0.604236 | 6_4:-19427686 | Msa0980860:five_prime_UTR |
| ACATCTAAGACTTACCTCAA+TGG | 0.613959 | 6_4:+19426585 | None:intergenic |
| GAGGACCTAACACAACACAT+AGG | 0.616752 | 6_4:-19427617 | Msa0980860:five_prime_UTR |
| AAGGTCATTTGTAGTTGTGG+CGG | 0.618036 | 6_4:+19427519 | None:intergenic |
| AGGTCTGTTGTGGACAACCC+AGG | 0.620556 | 6_4:-19424788 | Msa0980860:intron |
| GGTGTGCAATGTAGCCTGGA+GGG | 0.622480 | 6_4:-19424842 | Msa0980860:CDS |
| AACGTCGAGACTCAGAGCCA+TGG | 0.636555 | 6_4:+19427646 | None:intergenic |
| TTCTGCCGAAGAGTTTAGTG+AGG | 0.640814 | 6_4:-19420679 | Msa0980860:CDS |
| TGGTGTGCAATGTAGCCTGG+AGG | 0.652367 | 6_4:-19424843 | Msa0980860:CDS |
| GAGTCTCGACGTTTGTAACG+AGG | 0.655583 | 6_4:-19427636 | Msa0980860:five_prime_UTR |
| TCTAAGACTTACCTCAATGG+AGG | 0.655726 | 6_4:+19426588 | None:intergenic |
| TTCACCGGCGGTGAACTCGG+CGG | 0.715464 | 6_4:-19427674 | Msa0980860:five_prime_UTR |
| GTTACCGGTGACAGTTACGA+AGG | 0.729320 | 6_4:+19427500 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTAAATAATTTCAAAAAAA+AGG | + | chr6_4:19421249-19421268 | None:intergenic | 10.0% |
| !!! | ATATATTGATAATTGATATA+AGG | - | chr6_4:19422910-19422929 | Msa0980860:intron | 10.0% |
| !! | TTATGAAATAAAGAAAAATA+AGG | - | chr6_4:19424104-19424123 | Msa0980860:intron | 10.0% |
| !!! | AGATTATTTTCTTTTTTTAT+TGG | + | chr6_4:19426153-19426172 | None:intergenic | 10.0% |
| !!! | TGTAATTAAGATTTTTTTTA+TGG | - | chr6_4:19426863-19426882 | Msa0980860:intron | 10.0% |
| !! | TAATTTCAAATTTGACATTA+GGG | - | chr6_4:19420912-19420931 | Msa0980860:intron | 15.0% |
| !!! | AATATTAAACAATTCTGAAA+TGG | + | chr6_4:19422139-19422158 | None:intergenic | 15.0% |
| !! | AAGACTATATAAAAAGAAAT+TGG | + | chr6_4:19423479-19423498 | None:intergenic | 15.0% |
| !!! | AATTTCTTTTTATATAGTCT+TGG | - | chr6_4:19423478-19423497 | Msa0980860:intron | 15.0% |
| !! | TAGAATCAACATTATATAAT+TGG | + | chr6_4:19423699-19423718 | None:intergenic | 15.0% |
| !!! | CCATTTTCTTAAATTATTAT+CGG | + | chr6_4:19424197-19424216 | None:intergenic | 15.0% |
| !!! | TTCTATTTTTTGGTTTTATT+TGG | - | chr6_4:19425102-19425121 | Msa0980860:intron | 15.0% |
| !! | TACAAATATTAGGATTAAAT+AGG | + | chr6_4:19425734-19425753 | None:intergenic | 15.0% |
| !! | TTAATCCTAATATTTGTAAT+TGG | - | chr6_4:19425736-19425755 | Msa0980860:intron | 15.0% |
| !!! | ATTTTTTTTCTCTGTTTTAA+TGG | - | chr6_4:19425793-19425812 | Msa0980860:intron | 15.0% |
| !!! | GTTTTTTCATGATAAAAAAT+TGG | + | chr6_4:19425946-19425965 | None:intergenic | 15.0% |
| !! | TCATGAAAAAACTTATAAAT+TGG | - | chr6_4:19425954-19425973 | Msa0980860:intron | 15.0% |
| !!! | CATTCTATAATTTGTTATTA+TGG | - | chr6_4:19426266-19426285 | Msa0980860:intron | 15.0% |
| !!! | AAGAAGTTGAATTTATTTTT+TGG | - | chr6_4:19426319-19426338 | Msa0980860:intron | 15.0% |
| !! | ATATCTTCATAAAGTTAAAT+AGG | + | chr6_4:19426595-19426614 | None:intergenic | 15.0% |
| !! | CTAATTTCAAATTTGACATT+AGG | - | chr6_4:19420911-19420930 | Msa0980860:intron | 20.0% |
| !! | ATTTAAATGAAAATTGCACA+GGG | + | chr6_4:19421089-19421108 | None:intergenic | 20.0% |
| !! | AATTTAAATGAAAATTGCAC+AGG | + | chr6_4:19421090-19421109 | None:intergenic | 20.0% |
| !!! | ATTTAAGTTTTTCGAATAGT+AGG | - | chr6_4:19421274-19421293 | Msa0980860:intron | 20.0% |
| !! | TGTGAAATTATCAAATTTGA+AGG | - | chr6_4:19421856-19421875 | Msa0980860:intron | 20.0% |
| !!! | AGTTTTTAGAAAATGACTTA+CGG | + | chr6_4:19421915-19421934 | None:intergenic | 20.0% |
| !!! | GTCATTTGAGTTAAAATATT+TGG | - | chr6_4:19422016-19422035 | Msa0980860:intron | 20.0% |
| !! | TAAATGCACTAAGTTAATAT+TGG | - | chr6_4:19422066-19422085 | Msa0980860:intron | 20.0% |
| !! | TGTATTTCCTTCAATTTAAT+AGG | - | chr6_4:19422206-19422225 | Msa0980860:intron | 20.0% |
| !! | ATAACTAATCAAAGTTTGAT+CGG | + | chr6_4:19422460-19422479 | None:intergenic | 20.0% |
| !!! | TTTTTTTCATGAATTGACTT+TGG | - | chr6_4:19422704-19422723 | Msa0980860:intron | 20.0% |
| !!! | TTTTTAAAAATTGCAGATGT+AGG | - | chr6_4:19422791-19422810 | Msa0980860:intron | 20.0% |
| !! | CATATTAAAATTACTACCAA+TGG | + | chr6_4:19423789-19423808 | None:intergenic | 20.0% |
| !!! | GTAGTAATTTTAATATGTGA+AGG | - | chr6_4:19423792-19423811 | Msa0980860:intron | 20.0% |
| !!! | AATTTTAATATGTGAAGGAT+TGG | - | chr6_4:19423797-19423816 | Msa0980860:intron | 20.0% |
| !! | AAAATATTTAGACAGTGAAA+GGG | + | chr6_4:19423839-19423858 | None:intergenic | 20.0% |
| !! | AAAAATATTTAGACAGTGAA+AGG | + | chr6_4:19423840-19423859 | None:intergenic | 20.0% |
| !! | AATAATAAAGATGTAGAAGA+TGG | + | chr6_4:19423901-19423920 | None:intergenic | 20.0% |
| !!! | CAGTGTTTTTGATAATATAT+AGG | + | chr6_4:19424153-19424172 | None:intergenic | 20.0% |
| !! | CCGATAATAATTTAAGAAAA+TGG | - | chr6_4:19424194-19424213 | Msa0980860:intron | 20.0% |
| !!! | AATTGAAAGACAACTTTTAT+TGG | + | chr6_4:19424555-19424574 | None:intergenic | 20.0% |
| !!! | ATTTTAAATCACAATTGCAT+TGG | - | chr6_4:19424572-19424591 | Msa0980860:intron | 20.0% |
| !! | GGAAACTTAGAATTAATTAA+AGG | + | chr6_4:19424609-19424628 | None:intergenic | 20.0% |
| !! | TAATTAATTCTAAGTTTCCA+AGG | - | chr6_4:19424610-19424629 | Msa0980860:intron | 20.0% |
| !!! | CTTTTTTTAGAAAAGTAAGT+GGG | + | chr6_4:19424641-19424660 | None:intergenic | 20.0% |
| !!! | TCTTTTTTTAGAAAAGTAAG+TGG | + | chr6_4:19424642-19424661 | None:intergenic | 20.0% |
| !! | GAAACAAATAAAATGGAATA+AGG | + | chr6_4:19424830-19424849 | None:intergenic | 20.0% |
| !! | AGAATGAGAAACAAATAAAA+TGG | + | chr6_4:19424837-19424856 | None:intergenic | 20.0% |
| !!! | AATAAAGCTATGTTTTTTGA+CGG | - | chr6_4:19425217-19425236 | Msa0980860:intron | 20.0% |
| !!! | TTTTAACATCATAAAAAGTG+TGG | - | chr6_4:19425553-19425572 | Msa0980860:intron | 20.0% |
| !! | TTGACAAAACTTATGTTTAT+TGG | - | chr6_4:19425601-19425620 | Msa0980860:intron | 20.0% |
| !! | AATTGCCAATTACAAATATT+AGG | + | chr6_4:19425744-19425763 | None:intergenic | 20.0% |
| !! | TATCATCAGTTGAAAATTTA+AGG | + | chr6_4:19425828-19425847 | None:intergenic | 20.0% |
| !!! | GATTTTAATGATTAAGATTG+TGG | - | chr6_4:19425996-19426015 | Msa0980860:intron | 20.0% |
| !!! | ACTCTTTATCATTTCTTTTT+GGG | + | chr6_4:19426757-19426776 | None:intergenic | 20.0% |
| !!! | TGTAGAGTAATTTTGTTAAA+AGG | - | chr6_4:19426814-19426833 | Msa0980860:intron | 20.0% |
| !! | CCTTAAATCATAAATTTATG+AGG | + | chr6_4:19427184-19427203 | None:intergenic | 20.0% |
| !! | CCTCATAAATTTATGATTTA+AGG | - | chr6_4:19427181-19427200 | Msa0980860:intron | 20.0% |
| !! | AACTTCTCTAAATATATGAT+AGG | - | chr6_4:19427407-19427426 | Msa0980860:intron | 20.0% |
| !!! | GGTTAGTTTTAGTGAAAAAA+GGG | + | chr6_4:19421119-19421138 | None:intergenic | 25.0% |
| ! | CTCAAACAAGATGATAAAAA+AGG | - | chr6_4:19421302-19421321 | Msa0980860:intron | 25.0% |
| ! | TTGGTAGAGTGAATTAAAAA+GGG | + | chr6_4:19421364-19421383 | None:intergenic | 25.0% |
| !!! | AATCAGAAAGTATTGTAGTT+TGG | - | chr6_4:19421451-19421470 | Msa0980860:intron | 25.0% |
| !!! | CAAACTAACAAAACTTTTTC+TGG | + | chr6_4:19421588-19421607 | None:intergenic | 25.0% |
| !!! | CAGAAAAAGTTTTGTTAGTT+TGG | - | chr6_4:19421586-19421605 | Msa0980860:intron | 25.0% |
| !! | GCTTAAAGCTTTTAAATAGA+TGG | - | chr6_4:19421629-19421648 | Msa0980860:intron | 25.0% |
| ! | TCCTTCAATTTAATAGGATT+TGG | - | chr6_4:19422212-19422231 | Msa0980860:intron | 25.0% |
| ! | AAAACTGAAGGAAGTAAATT+AGG | + | chr6_4:19422309-19422328 | None:intergenic | 25.0% |
| !! | TAATTTACTTCCTTCAGTTT+TGG | - | chr6_4:19422308-19422327 | Msa0980860:intron | 25.0% |
| !! | ATTTTCAATGCAAATCAAGA+TGG | + | chr6_4:19422527-19422546 | None:intergenic | 25.0% |
| !! | GATTTTCAATATTTGCTTTG+TGG | - | chr6_4:19422576-19422595 | Msa0980860:intron | 25.0% |
| ! | TGCTATCATATAATTTGATG+AGG | + | chr6_4:19422676-19422695 | None:intergenic | 25.0% |
| ! | AAAATGGCATAATTACATCT+TGG | - | chr6_4:19422817-19422836 | Msa0980860:intron | 25.0% |
| ! | TGATAATTGATATAAGGTGT+TGG | - | chr6_4:19422916-19422935 | Msa0980860:intron | 25.0% |
| !! | GATAATTGATATAAGGTGTT+GGG | - | chr6_4:19422917-19422936 | Msa0980860:intron | 25.0% |
| ! | CCTATTTGAATACAAACTTT+GGG | + | chr6_4:19422945-19422964 | None:intergenic | 25.0% |
| ! | CCAAAGTTTGTATTCAAATA+GGG | - | chr6_4:19422943-19422962 | Msa0980860:intron | 25.0% |
| ! | GAGAAATCATATAGACTTAA+TGG | - | chr6_4:19423203-19423222 | Msa0980860:intron | 25.0% |
| ! | TCTAAGAGATAACAGAATAA+GGG | + | chr6_4:19423274-19423293 | None:intergenic | 25.0% |
| ! | ATCTAAGAGATAACAGAATA+AGG | + | chr6_4:19423275-19423294 | None:intergenic | 25.0% |
| ! | TGCAATTTCTTATCAATTGA+TGG | - | chr6_4:19423333-19423352 | Msa0980860:intron | 25.0% |
| ! | ATTTAGTGTAGTTACAGTAA+AGG | - | chr6_4:19423375-19423394 | Msa0980860:intron | 25.0% |
| ! | TTTAGTGTAGTTACAGTAAA+GGG | - | chr6_4:19423376-19423395 | Msa0980860:intron | 25.0% |
| !! | TGTAGTTACAGTAAGATTTT+GGG | - | chr6_4:19423424-19423443 | Msa0980860:intron | 25.0% |
| !!! | GAGGAATGTATATTGATTTT+TGG | - | chr6_4:19423958-19423977 | Msa0980860:intron | 25.0% |
| !!! | ATATTGATTTTTGGATATGC+AGG | - | chr6_4:19423967-19423986 | Msa0980860:intron | 25.0% |
| !!! | TATTGATTTTTGGATATGCA+GGG | - | chr6_4:19423968-19423987 | Msa0980860:intron | 25.0% |
| !!! | AATATATAGGCCTTATTTAC+CGG | + | chr6_4:19424140-19424159 | None:intergenic | 25.0% |
| ! | GTATTTGTCAAAAAAAGAAG+AGG | + | chr6_4:19424355-19424374 | None:intergenic | 25.0% |
| !! | AAAGTATCAATCACTAATTG+GGG | + | chr6_4:19424793-19424812 | None:intergenic | 25.0% |
| !!! | GAAAGTATCAATCACTAATT+GGG | + | chr6_4:19424794-19424813 | None:intergenic | 25.0% |
| !!! | TGAAAGTATCAATCACTAAT+TGG | + | chr6_4:19424795-19424814 | None:intergenic | 25.0% |
| !! | GTGTTGTTAAGAATGATAAA+CGG | - | chr6_4:19425134-19425153 | Msa0980860:intron | 25.0% |
| ! | TGATCAAAAACAATTGCTAA+AGG | - | chr6_4:19425180-19425199 | Msa0980860:intron | 25.0% |
| ! | AAGAGAAAATGTTAGATATG+TGG | + | chr6_4:19425392-19425411 | None:intergenic | 25.0% |
| !! | TTAATTGTTGGTGAAAACTA+AGG | - | chr6_4:19425687-19425706 | Msa0980860:intron | 25.0% |
| !! | TAATTGTTGGTGAAAACTAA+GGG | - | chr6_4:19425688-19425707 | Msa0980860:intron | 25.0% |
| ! | TATTAGGATTAAATAGGTTG+TGG | + | chr6_4:19425728-19425747 | None:intergenic | 25.0% |
| ! | ATACTCTTATCTCATTGTAA+AGG | + | chr6_4:19425887-19425906 | None:intergenic | 25.0% |
| ! | TTTACAATGAGATAAGAGTA+TGG | - | chr6_4:19425886-19425905 | Msa0980860:intron | 25.0% |
| !!! | TTTTTTTATTGGTTGCTTGT+GGG | + | chr6_4:19426142-19426161 | None:intergenic | 25.0% |
| ! | AAATAATCTTCCATGCATAT+TGG | - | chr6_4:19426164-19426183 | Msa0980860:intron | 25.0% |
| !! | TAGCAGGATTTATATTTTGT+TGG | - | chr6_4:19426205-19426224 | Msa0980860:intron | 25.0% |
| ! | AACTTCTTACTTCGTATTAT+TGG | + | chr6_4:19426307-19426326 | None:intergenic | 25.0% |
| !!! | TTTTTGGTGTATATTACATG+TGG | - | chr6_4:19426335-19426354 | Msa0980860:intron | 25.0% |
| !! | GATTTGAGATCTAAAAAGAA+AGG | + | chr6_4:19426367-19426386 | None:intergenic | 25.0% |
| !!! | AGTTCTGAAATCAATTTAGA+GGG | + | chr6_4:19426389-19426408 | None:intergenic | 25.0% |
| ! | GAAAAAAAAATGCTCATTGT+TGG | - | chr6_4:19426642-19426661 | Msa0980860:CDS | 25.0% |
| !! | CACTCTTTATCATTTCTTTT+TGG | + | chr6_4:19426758-19426777 | None:intergenic | 25.0% |
| ! | AAGCAATAATAAACTTTCTC+AGG | + | chr6_4:19426842-19426861 | None:intergenic | 25.0% |
| ! | TTATGCTATATGATTCCTAA+TGG | + | chr6_4:19426941-19426960 | None:intergenic | 25.0% |
| ! | TGAGGACAATAATAATCATA+TGG | - | chr6_4:19427039-19427058 | Msa0980860:intron | 25.0% |
| ATGGAAGGGTAAATAAAAGA+TGG | + | chr6_4:19420594-19420613 | None:intergenic | 30.0% | |
| AAAATTCAGAGAAAGACAGA+TGG | + | chr6_4:19420613-19420632 | None:intergenic | 30.0% | |
| CAATCGATATGAACATGAAT+CGG | + | chr6_4:19420880-19420899 | None:intergenic | 30.0% | |
| !!! | CGGTTAGTTTTAGTGAAAAA+AGG | + | chr6_4:19421120-19421139 | None:intergenic | 30.0% |
| GAGTGAATTAAAAAGGGAAA+AGG | + | chr6_4:19421358-19421377 | None:intergenic | 30.0% | |
| CTTGGTAGAGTGAATTAAAA+AGG | + | chr6_4:19421365-19421384 | None:intergenic | 30.0% | |
| !! | CTATTTAAAAGCTTTAAGCC+AGG | + | chr6_4:19421628-19421647 | None:intergenic | 30.0% |
| !! | TTCTTACTTTTCTGACGATT+CGG | - | chr6_4:19421727-19421746 | Msa0980860:intron | 30.0% |
| !! | GATTTTGAGAGCAACTAAAT+AGG | - | chr6_4:19421810-19421829 | Msa0980860:intron | 30.0% |
| CTACAATGTCAAATAGCTAT+GGG | - | chr6_4:19421879-19421898 | Msa0980860:intron | 30.0% | |
| CTATCAATCTCTTATTGTAG+AGG | - | chr6_4:19421933-19421952 | Msa0980860:intron | 30.0% | |
| GCCAAATCCTATTAAATTGA+AGG | + | chr6_4:19422216-19422235 | None:intergenic | 30.0% | |
| AATTTATAACCACTTTGAGC+AGG | + | chr6_4:19422429-19422448 | None:intergenic | 30.0% | |
| TTGCAGATGTAGGAATAAAA+TGG | - | chr6_4:19422801-19422820 | Msa0980860:intron | 30.0% | |
| ACAAATATAACCGTCACATA+GGG | - | chr6_4:19422886-19422905 | Msa0980860:intron | 30.0% | |
| CCCAAAGTTTGTATTCAAAT+AGG | - | chr6_4:19422942-19422961 | Msa0980860:intron | 30.0% | |
| CCCTATTTGAATACAAACTT+TGG | + | chr6_4:19422946-19422965 | None:intergenic | 30.0% | |
| AGTTTGTATTCAAATAGGGT+AGG | - | chr6_4:19422947-19422966 | Msa0980860:intron | 30.0% | |
| CTAAGAGATAACAGAATAAG+GGG | + | chr6_4:19423273-19423292 | None:intergenic | 30.0% | |
| ! | GTGTAGTTACAGTAAGATTT+TGG | - | chr6_4:19423423-19423442 | Msa0980860:intron | 30.0% |
| ! | GTAGTTACAGTAAGATTTTG+GGG | - | chr6_4:19423425-19423444 | Msa0980860:intron | 30.0% |
| ! | TAGTTACAGTAAGATTTTGG+GGG | - | chr6_4:19423426-19423445 | Msa0980860:intron | 30.0% |
| GAAGAGAACCAATTGTAATT+TGG | - | chr6_4:19423761-19423780 | Msa0980860:intron | 30.0% | |
| CAATGGTTCCAAATTACAAT+TGG | + | chr6_4:19423772-19423791 | None:intergenic | 30.0% | |
| ! | CAATTGTAATTTGGAACCAT+TGG | - | chr6_4:19423770-19423789 | Msa0980860:intron | 30.0% |
| TCACTGTTATAAGTATGTTG+AGG | - | chr6_4:19423939-19423958 | Msa0980860:intron | 30.0% | |
| !! | ATTGATTTTTGGATATGCAG+GGG | - | chr6_4:19423969-19423988 | Msa0980860:intron | 30.0% |
| ACATGATACATATCTGACAT+TGG | - | chr6_4:19424262-19424281 | Msa0980860:intron | 30.0% | |
| CATGATACATATCTGACATT+GGG | - | chr6_4:19424263-19424282 | Msa0980860:intron | 30.0% | |
| GCACAAATACTTCTCATATT+TGG | + | chr6_4:19424294-19424313 | None:intergenic | 30.0% | |
| ATCTAACGGTTATAACAGTT+TGG | + | chr6_4:19424497-19424516 | None:intergenic | 30.0% | |
| ! | CAACTTTTATTGGAAACAGA+TGG | + | chr6_4:19424545-19424564 | None:intergenic | 30.0% |
| ATAGCAAATTGATTGTCTTC+CGG | + | chr6_4:19425011-19425030 | None:intergenic | 30.0% | |
| ATGATAAACGGTAAAATGAG+TGG | - | chr6_4:19425146-19425165 | Msa0980860:intron | 30.0% | |
| TGATAAACGGTAAAATGAGT+GGG | - | chr6_4:19425147-19425166 | Msa0980860:intron | 30.0% | |
| !! | CAATTTCTGGTTCAAATTCA+CGG | - | chr6_4:19425257-19425276 | Msa0980860:intron | 30.0% |
| AAGACTTTCTTCCTTTGATA+TGG | - | chr6_4:19425362-19425381 | Msa0980860:intron | 30.0% | |
| ! | TATGTGGATTACCATATCAA+AGG | + | chr6_4:19425376-19425395 | None:intergenic | 30.0% |
| AAAATCAGCATGTACTTTGA+TGG | - | chr6_4:19425430-19425449 | Msa0980860:intron | 30.0% | |
| ATCAGAACCAAGTTAATTGT+TGG | - | chr6_4:19425675-19425694 | Msa0980860:intron | 30.0% | |
| ! | GTTTTCACCAACAATTAACT+TGG | + | chr6_4:19425685-19425704 | None:intergenic | 30.0% |
| TTAAGATTGTGGTATGAATG+TGG | - | chr6_4:19426007-19426026 | Msa0980860:intron | 30.0% | |
| CTACTCAAAATCTTAGATCA+TGG | - | chr6_4:19426059-19426078 | Msa0980860:intron | 30.0% | |
| TCAAAATCTTAGATCATGGA+GGG | - | chr6_4:19426063-19426082 | Msa0980860:intron | 30.0% | |
| !!! | CTTTTTTTATTGGTTGCTTG+TGG | + | chr6_4:19426143-19426162 | None:intergenic | 30.0% |
| ACTAACTTGAATGAACTTGA+AGG | + | chr6_4:19426241-19426260 | None:intergenic | 30.0% | |
| !! | CAGTTCTGAAATCAATTTAG+AGG | + | chr6_4:19426390-19426409 | None:intergenic | 30.0% |
| CTCATAATTGAATCACATTG+AGG | - | chr6_4:19426494-19426513 | Msa0980860:intron | 30.0% | |
| ! | AAGGATTTTCATCTCATTGT+GGG | + | chr6_4:19426694-19426713 | None:intergenic | 30.0% |
| ! | AAAGGATTTTCATCTCATTG+TGG | + | chr6_4:19426695-19426714 | None:intergenic | 30.0% |
| ATTATCCCTACTAATCTCTT+TGG | + | chr6_4:19426972-19426991 | None:intergenic | 30.0% | |
| !!! | TGGTTTTGGTTTGTTTTCTT+TGG | - | chr6_4:19427081-19427100 | Msa0980860:intron | 30.0% |
| !!! | GGTTTTGGTTTGTTTTCTTT+GGG | - | chr6_4:19427082-19427101 | Msa0980860:intron | 30.0% |
| !!! | GTTTTGGTTTGTTTTCTTTG+GGG | - | chr6_4:19427083-19427102 | Msa0980860:intron | 30.0% |
| !! | TTGTTTTGCAAATGCAGTAA+AGG | + | chr6_4:19427146-19427165 | None:intergenic | 30.0% |
| ATACAATGTACCTCTTAAGA+AGG | + | chr6_4:19427231-19427250 | None:intergenic | 30.0% | |
| AACTCAGCTGAACAAAATTT+AGG | + | chr6_4:19427364-19427383 | None:intergenic | 30.0% | |
| TAATATACCGAATCATACCT+TGG | + | chr6_4:19427482-19427501 | None:intergenic | 30.0% | |
| !! | TGATTCGGTATATTAGAATG+TGG | - | chr6_4:19427487-19427506 | Msa0980860:intron | 30.0% |
| GTATATTAGAATGTGGAATG+TGG | - | chr6_4:19427494-19427513 | Msa0980860:intron | 30.0% | |
| ! | TGTGGAGTAATTTTGTTGAA+AGG | - | chr6_4:19427512-19427531 | Msa0980860:exon | 30.0% |
| ! | GTGGAGTAATTTTGTTGAAA+GGG | - | chr6_4:19427513-19427532 | Msa0980860:exon | 30.0% |
| TTATGCTCTATGATTCCTAA+TGG | + | chr6_4:19427639-19427658 | None:intergenic | 30.0% | |
| TTGCTAAAGTAGTAGCTAAT+TGG | - | chr6_4:19427697-19427716 | Msa0980860:five_prime_UTR | 30.0% | |
| ATAACCCTATGTGTTGTGTT+AGG | + | chr6_4:19420732-19420751 | None:intergenic | 35.0% | |
| ! | AGAGAAATAGATTTTCCAGC+GGG | + | chr6_4:19420766-19420785 | None:intergenic | 35.0% |
| ! | GAGAGAAATAGATTTTCCAG+CGG | + | chr6_4:19420767-19420786 | None:intergenic | 35.0% |
| CAAAACAAAAGCTTGAAGCT+TGG | + | chr6_4:19421383-19421402 | None:intergenic | 35.0% | |
| !!! | AGCTTCAAGCTTTTGTTTTG+TGG | - | chr6_4:19421383-19421402 | Msa0980860:intron | 35.0% |
| !! | AGCTGTGATCTTTGAGTTTT+AGG | - | chr6_4:19421413-19421432 | Msa0980860:intron | 35.0% |
| !! | GCTGTGATCTTTGAGTTTTA+GGG | - | chr6_4:19421414-19421433 | Msa0980860:intron | 35.0% |
| !! | CTGTGATCTTTGAGTTTTAG+GGG | - | chr6_4:19421415-19421434 | Msa0980860:intron | 35.0% |
| GAGAGAATAGTAAATTCACC+TGG | + | chr6_4:19421566-19421585 | None:intergenic | 35.0% | |
| GGATAGATAAATTAGACTCC+TGG | - | chr6_4:19421607-19421626 | Msa0980860:intron | 35.0% | |
| AGTAAGAAGGCTTCACAATT+AGG | + | chr6_4:19421715-19421734 | None:intergenic | 35.0% | |
| GAATCGTCAGAAAAGTAAGA+AGG | + | chr6_4:19421728-19421747 | None:intergenic | 35.0% | |
| ! | ACATCTAAGACTTACCTCAA+TGG | + | chr6_4:19421759-19421778 | None:intergenic | 35.0% |
| TCTTAGATGTGCTTATCGTA+TGG | - | chr6_4:19421769-19421788 | Msa0980860:intron | 35.0% | |
| GCTACAATGTCAAATAGCTA+TGG | - | chr6_4:19421878-19421897 | Msa0980860:intron | 35.0% | |
| TGCTTATGATCACACAAATG+CGG | + | chr6_4:19422093-19422112 | None:intergenic | 35.0% | |
| !!! | TTCCTTCAGTTTTGGTTGTT+GGG | - | chr6_4:19422316-19422335 | Msa0980860:intron | 35.0% |
| ATATTCTTCACTCTCTCCAT+AGG | + | chr6_4:19422353-19422372 | None:intergenic | 35.0% | |
| AAATTGAATCCTGCTCAAAG+TGG | - | chr6_4:19422417-19422436 | Msa0980860:intron | 35.0% | |
| GAATGCTTGCAAGAACAAAA+TGG | + | chr6_4:19422491-19422510 | None:intergenic | 35.0% | |
| CAACAGAAGCAAACAATACA+TGG | + | chr6_4:19422557-19422576 | None:intergenic | 35.0% | |
| AACCCACATAACATACATCT+TGG | - | chr6_4:19422749-19422768 | Msa0980860:intron | 35.0% | |
| CTCCAAGATGTATGTTATGT+GGG | + | chr6_4:19422754-19422773 | None:intergenic | 35.0% | |
| ACTCCAAGATGTATGTTATG+TGG | + | chr6_4:19422755-19422774 | None:intergenic | 35.0% | |
| CACAAATATAACCGTCACAT+AGG | - | chr6_4:19422885-19422904 | Msa0980860:intron | 35.0% | |
| TCAATATATGCCCTATGTGA+CGG | + | chr6_4:19422899-19422918 | None:intergenic | 35.0% | |
| TTCAAATAGGGTAGGTTATG+TGG | - | chr6_4:19422955-19422974 | Msa0980860:intron | 35.0% | |
| ! | TAGGTTATGTGGTCTTTTGT+GGG | - | chr6_4:19422966-19422985 | Msa0980860:intron | 35.0% |
| TGACACAATAACAGAAATGC+AGG | + | chr6_4:19423038-19423057 | None:intergenic | 35.0% | |
| AAATATTGCAAGATAGCCAC+AGG | + | chr6_4:19423096-19423115 | None:intergenic | 35.0% | |
| GGTATGAATATGAACTAGCA+TGG | - | chr6_4:19423397-19423416 | Msa0980860:intron | 35.0% | |
| AAAACCATCAGAATTAGGGT+TGG | + | chr6_4:19424470-19424489 | None:intergenic | 35.0% | |
| ! | AACCCTAATTCTGATGGTTT+TGG | - | chr6_4:19424469-19424488 | Msa0980860:intron | 35.0% |
| AGCCAAAACCATCAGAATTA+GGG | + | chr6_4:19424474-19424493 | None:intergenic | 35.0% | |
| ATCAACACAGATGCATCTAA+CGG | + | chr6_4:19424511-19424530 | None:intergenic | 35.0% | |
| ATTGTAGAAGCAAATGAGAG+AGG | + | chr6_4:19424736-19424755 | None:intergenic | 35.0% | |
| ATATGAAGAGAAACTGAGAG+AGG | + | chr6_4:19424890-19424909 | None:intergenic | 35.0% | |
| GAATTGATTGTCGTTCAATG+AGG | + | chr6_4:19424914-19424933 | None:intergenic | 35.0% | |
| GATAAACGGTAAAATGAGTG+GGG | - | chr6_4:19425148-19425167 | Msa0980860:intron | 35.0% | |
| ATAAACGGTAAAATGAGTGG+GGG | - | chr6_4:19425149-19425168 | Msa0980860:intron | 35.0% | |
| ACTTCCAGGAATTCAATTTC+TGG | - | chr6_4:19425244-19425263 | Msa0980860:intron | 35.0% | |
| TGAACCAGAAATTGAATTCC+TGG | + | chr6_4:19425251-19425270 | None:intergenic | 35.0% | |
| GTTACCTCTATAACGTTTGT+CGG | + | chr6_4:19425310-19425329 | None:intergenic | 35.0% | |
| TAGGATTAAATAGGTTGTGG+TGG | + | chr6_4:19425725-19425744 | None:intergenic | 35.0% | |
| CTCAAAATCTTAGATCATGG+AGG | - | chr6_4:19426062-19426081 | Msa0980860:intron | 35.0% | |
| AGCAAATGTAGTAAGTTGTG+TGG | - | chr6_4:19426098-19426117 | Msa0980860:intron | 35.0% | |
| TAATCTTCCATGCATATTGG+TGG | - | chr6_4:19426167-19426186 | Msa0980860:intron | 35.0% | |
| TATTAACCAGCATCAGATGT+TGG | + | chr6_4:19426542-19426561 | None:intergenic | 35.0% | |
| TATACCGAACCATACTCAAA+GGG | + | chr6_4:19426781-19426800 | None:intergenic | 35.0% | |
| ATATACCGAACCATACTCAA+AGG | + | chr6_4:19426782-19426801 | None:intergenic | 35.0% | |
| TATATGATTCCTAATGGTCC+AGG | + | chr6_4:19426935-19426954 | None:intergenic | 35.0% | |
| TTTCTGCCAAAGAGATTAGT+AGG | - | chr6_4:19426963-19426982 | Msa0980860:intron | 35.0% | |
| TTCTGCCAAAGAGATTAGTA+GGG | - | chr6_4:19426964-19426983 | Msa0980860:intron | 35.0% | |
| TTGCTAAAGCAGTAGCTAAT+TGG | - | chr6_4:19426999-19427018 | Msa0980860:intron | 35.0% | |
| ATCATATGGTTTAACCCTTC+AGG | - | chr6_4:19427053-19427072 | Msa0980860:intron | 35.0% | |
| ACATACCTTACCTTCTTAAG+AGG | - | chr6_4:19427218-19427237 | Msa0980860:intron | 35.0% | |
| ATGTACCTCTTAAGAAGGTA+AGG | + | chr6_4:19427226-19427245 | None:intergenic | 35.0% | |
| GAAGACACTTTAAGCAAGAT+TGG | + | chr6_4:19427313-19427332 | None:intergenic | 35.0% | |
| AGATGTCGAAACTGTGATTA+AGG | - | chr6_4:19427599-19427618 | Msa0980860:five_prime_UTR | 35.0% | |
| TCAGAGAAAGACAGATGGAA+GGG | + | chr6_4:19420608-19420627 | None:intergenic | 40.0% | |
| TTCAGAGAAAGACAGATGGA+AGG | + | chr6_4:19420609-19420628 | None:intergenic | 40.0% | |
| AGGACCTAACACAACACATA+GGG | - | chr6_4:19420725-19420744 | Msa0980860:CDS | 40.0% | |
| AAGGTCATTTGTAGTTGTGG+CGG | + | chr6_4:19420825-19420844 | None:intergenic | 40.0% | |
| ACGAAGGTCATTTGTAGTTG+TGG | + | chr6_4:19420828-19420847 | None:intergenic | 40.0% | |
| CGATATGAACATGAATCGGT+GGG | + | chr6_4:19420876-19420895 | None:intergenic | 40.0% | |
| TCGATATGAACATGAATCGG+TGG | + | chr6_4:19420877-19420896 | None:intergenic | 40.0% | |
| !!! | CTGCTGCTATTGTTTTTGCA+CGG | + | chr6_4:19421140-19421159 | None:intergenic | 40.0% |
| CAGCAGTTGCAATTTAACAC+AGG | - | chr6_4:19421154-19421173 | Msa0980860:intron | 40.0% | |
| TAGTTTGGATTGAGTGCAGA+GGG | - | chr6_4:19421466-19421485 | Msa0980860:intron | 40.0% | |
| TTTCCAATGCACTCTCTGAA+GGG | + | chr6_4:19421691-19421710 | None:intergenic | 40.0% | |
| ! | TTTTCCAATGCACTCTCTGA+AGG | + | chr6_4:19421692-19421711 | None:intergenic | 40.0% |
| ! | TCTAAGACTTACCTCAATGG+AGG | + | chr6_4:19421756-19421775 | None:intergenic | 40.0% |
| GTAGAGGTTGAATAGCTTCA+AGG | - | chr6_4:19421949-19421968 | Msa0980860:intron | 40.0% | |
| !!! | CTTCCTTCAGTTTTGGTTGT+TGG | - | chr6_4:19422315-19422334 | Msa0980860:intron | 40.0% |
| AACCCAACAACCAAAACTGA+AGG | + | chr6_4:19422321-19422340 | None:intergenic | 40.0% | |
| TTGGGTTAATCTACAGCCTA+TGG | - | chr6_4:19422334-19422353 | Msa0980860:intron | 40.0% | |
| CATACATCTTGGAGTTAGTG+TGG | - | chr6_4:19422760-19422779 | Msa0980860:intron | 40.0% | |
| ! | GTAGGTTATGTGGTCTTTTG+TGG | - | chr6_4:19422965-19422984 | Msa0980860:intron | 40.0% |
| ! | AGGTTATGTGGTCTTTTGTG+GGG | - | chr6_4:19422967-19422986 | Msa0980860:intron | 40.0% |
| ! | CTCTGAAAACTTCTAGCAGA+TGG | - | chr6_4:19423156-19423175 | Msa0980860:intron | 40.0% |
| ACTTCTGTTTGTTCCTGCAA+AGG | - | chr6_4:19423533-19423552 | Msa0980860:intron | 40.0% | |
| AGTAGGTGATGTTCATGGTT+GGG | - | chr6_4:19423608-19423627 | Msa0980860:intron | 40.0% | |
| TAACAACAATACACCCCCAA+TGG | + | chr6_4:19423659-19423678 | None:intergenic | 40.0% | |
| ! | TGGGGGTGTATTGTTGTTAA+TGG | - | chr6_4:19423660-19423679 | Msa0980860:intron | 40.0% |
| TTATTTCACTATGTCGCACG+TGG | + | chr6_4:19424038-19424057 | None:intergenic | 40.0% | |
| AAAATAAGGCCTACACATGC+CGG | - | chr6_4:19424118-19424137 | Msa0980860:intron | 40.0% | |
| ! | TGTCGATGTCGTGTTGATAT+CGG | - | chr6_4:19424239-19424258 | Msa0980860:intron | 40.0% |
| TATAGTCAAAATGACCCGTG+CGG | - | chr6_4:19424389-19424408 | Msa0980860:intron | 40.0% | |
| GAGCCAAAACCATCAGAATT+AGG | + | chr6_4:19424475-19424494 | None:intergenic | 40.0% | |
| !! | TTGGAAACAGATGGATTGTG+TGG | + | chr6_4:19424536-19424555 | None:intergenic | 40.0% |
| GTATCAATCACTAATTGGGG+AGG | + | chr6_4:19424790-19424809 | None:intergenic | 40.0% | |
| ! | TTTTTGACGGAAACACTTCC+AGG | - | chr6_4:19425230-19425249 | Msa0980860:intron | 40.0% |
| AATTCACGGAAGAACGATTC+TGG | - | chr6_4:19425271-19425290 | Msa0980860:intron | 40.0% | |
| GCTATGTCTTCAACATCATG+TGG | - | chr6_4:19425764-19425783 | Msa0980860:intron | 40.0% | |
| ATTAGACCAACATCTGATGC+TGG | - | chr6_4:19426533-19426552 | Msa0980860:intron | 40.0% | |
| !! | TAAAGAGTGCCCTTTGAGTA+TGG | - | chr6_4:19426769-19426788 | Msa0980860:intron | 40.0% |
| !! | TGGTTCGGTATATTAGAACG+TGG | - | chr6_4:19426789-19426808 | Msa0980860:intron | 40.0% |
| CAGAGAACTTGAGAAAGATG+CGG | - | chr6_4:19426886-19426905 | Msa0980860:intron | 40.0% | |
| AGATGCGGAAACTGTGATTA+AGG | - | chr6_4:19426901-19426920 | Msa0980860:intron | 40.0% | |
| GTTTAACCCTTCAGGATAGT+TGG | - | chr6_4:19427061-19427080 | Msa0980860:intron | 40.0% | |
| CCAAAACCAACTATCCTGAA+GGG | + | chr6_4:19427070-19427089 | None:intergenic | 40.0% | |
| ACCAAAACCAACTATCCTGA+AGG | + | chr6_4:19427071-19427090 | None:intergenic | 40.0% | |
| !!! | TTGGTTTGTTTTCTTTGGGG+TGG | - | chr6_4:19427086-19427105 | Msa0980860:intron | 40.0% |
| CAATAGCACTGTTAGAACAC+AGG | + | chr6_4:19427272-19427291 | None:intergenic | 40.0% | |
| ! | TTGCTTTCTTTTTCCAGCCA+AGG | - | chr6_4:19427462-19427481 | Msa0980860:intron | 40.0% |
| TTTCCAGCCAAGGTATGATT+CGG | - | chr6_4:19427472-19427491 | Msa0980860:intron | 40.0% | |
| TCTATGATTCCTAATGGTCC+AGG | + | chr6_4:19427633-19427652 | None:intergenic | 40.0% | |
| ATCAGCCTCACTAAACTCTT+CGG | + | chr6_4:19427670-19427689 | None:intergenic | 40.0% | |
| ATGAGGAAGGAAGAAGAGAG+AGG | + | chr6_4:19420639-19420658 | None:intergenic | 45.0% | |
| GAGGACCTAACACAACACAT+AGG | - | chr6_4:19420724-19420743 | Msa0980860:CDS | 45.0% | |
| ATGACCTTCGTAACTGTCAC+CGG | - | chr6_4:19420837-19420856 | Msa0980860:intron | 45.0% | |
| ACTCAAAGATCACAGCTGTC+AGG | + | chr6_4:19421410-19421429 | None:intergenic | 45.0% | |
| GTAGTTTGGATTGAGTGCAG+AGG | - | chr6_4:19421465-19421484 | Msa0980860:intron | 45.0% | |
| ! | CAGAGGGATGCTTTTCATGT+TGG | - | chr6_4:19421482-19421501 | Msa0980860:intron | 45.0% |
| ! | GGGATGCTTTTCATGTTGGA+CGG | - | chr6_4:19421486-19421505 | Msa0980860:intron | 45.0% |
| ! | TTTCCCTTCAGAGAGTGCAT+TGG | - | chr6_4:19421685-19421704 | Msa0980860:intron | 45.0% |
| ! | GTCTTTTGTGGGGTTTGTCT+CGG | - | chr6_4:19422977-19422996 | Msa0980860:intron | 45.0% |
| ! | ACCAGTTTTGCTGCTATGTG+TGG | - | chr6_4:19423064-19423083 | Msa0980860:CDS | 45.0% |
| ACCACACATAGCAGCAAAAC+TGG | + | chr6_4:19423068-19423087 | None:intergenic | 45.0% | |
| TTTGCTGCTATGTGTGGTCA+TGG | - | chr6_4:19423070-19423089 | Msa0980860:CDS | 45.0% | |
| GAGTAGGTGATGTTCATGGT+TGG | - | chr6_4:19423607-19423626 | Msa0980860:intron | 45.0% | |
| ! | CCTTATTTACCGGCATGTGT+AGG | + | chr6_4:19424130-19424149 | None:intergenic | 45.0% |
| CCTACACATGCCGGTAAATA+AGG | - | chr6_4:19424127-19424146 | Msa0980860:intron | 45.0% | |
| TGTGCCAACCCTAATTCTGA+TGG | - | chr6_4:19424463-19424482 | Msa0980860:intron | 45.0% | |
| AAAGTAAGTGGGTAGTGCCT+TGG | + | chr6_4:19424630-19424649 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAGAGAGTA+CGG | + | chr6_4:19424695-19424714 | None:intergenic | 45.0% | |
| AGAGGAGAATAGCAGCGATT+GGG | + | chr6_4:19424872-19424891 | None:intergenic | 45.0% | |
| ATCCTCATCGAGTCAGATTC+CGG | - | chr6_4:19424934-19424953 | Msa0980860:intron | 45.0% | |
| ACAGCTCTCACAGTGGTTTA+CGG | + | chr6_4:19424968-19424987 | None:intergenic | 45.0% | |
| GCTGTGAGATTGAGAGTGAA+CGG | - | chr6_4:19424983-19425002 | Msa0980860:intron | 45.0% | |
| AGATTGAGAGTGAACGGTTC+CGG | - | chr6_4:19424989-19425008 | Msa0980860:intron | 45.0% | |
| GCAACCGACAAACGTTATAG+AGG | - | chr6_4:19425303-19425322 | Msa0980860:intron | 45.0% | |
| TCAAGCACATGCTTTGTCTG+AGG | + | chr6_4:19425585-19425604 | None:intergenic | 45.0% | |
| ! | TCCATGCATATTGGTGGTAG+TGG | - | chr6_4:19426173-19426192 | Msa0980860:intron | 45.0% |
| GTAGTGGCAAACAAGTTAGC+AGG | - | chr6_4:19426189-19426208 | Msa0980860:intron | 45.0% | |
| AGTGCCCTTTGAGTATGGTT+CGG | - | chr6_4:19426774-19426793 | Msa0980860:intron | 45.0% | |
| !! | CCCTTCAGGATAGTTGGTTT+TGG | - | chr6_4:19427067-19427086 | Msa0980860:intron | 45.0% |
| ATACCGAATCATACCTTGGC+TGG | + | chr6_4:19427478-19427497 | None:intergenic | 45.0% | |
| TTCTGCCGAAGAGTTTAGTG+AGG | - | chr6_4:19427662-19427681 | Msa0980860:five_prime_UTR | 45.0% | |
| GCAAAGAAATGCAACGCTTG+AGG | - | chr6_4:19427719-19427738 | Msa0980860:five_prime_UTR | 45.0% | |
| !!! | ATTTAAATTTTTCTATTTTT+TGG | - | chr6_4:19425092-19425111 | Msa0980860:intron | 5.0% |
| !! | TTAAAATAAATATTACAAAA+AGG | + | chr6_4:19426713-19426732 | None:intergenic | 5.0% |
| GAGTCTCGACGTTTGTAACG+AGG | - | chr6_4:19420705-19420724 | Msa0980860:CDS | 50.0% | |
| TTATTCTTCGCACATCCCGC+TGG | - | chr6_4:19420748-19420767 | Msa0980860:CDS | 50.0% | |
| GTTACCGGTGACAGTTACGA+AGG | + | chr6_4:19420844-19420863 | None:intergenic | 50.0% | |
| GGTGGGAGAAAGTGAGTTAC+CGG | + | chr6_4:19420859-19420878 | None:intergenic | 50.0% | |
| ! | CTGGCTCTCATATTGCTGTC+AGG | + | chr6_4:19421547-19421566 | None:intergenic | 50.0% |
| CTGACAGCAATATGAGAGCC+AGG | - | chr6_4:19421545-19421564 | Msa0980860:intron | 50.0% | |
| !! | CGATTCGGTTTCCTCCATTG+AGG | - | chr6_4:19421742-19421761 | Msa0980860:intron | 50.0% |
| ! | TCTTGGTGTGCAATGTAGCC+TGG | - | chr6_4:19423495-19423514 | Msa0980860:intron | 50.0% |
| AGTTGTTAACAGCACCCTCC+AGG | + | chr6_4:19423516-19423535 | None:intergenic | 50.0% | |
| GTTCCTGCAAAGGTCTGTTG+TGG | - | chr6_4:19423543-19423562 | Msa0980860:intron | 50.0% | |
| TGTCCACAACAGACCTTTGC+AGG | + | chr6_4:19423549-19423568 | None:intergenic | 50.0% | |
| AGAGTACGGTGGAGAGTGAT+GGG | + | chr6_4:19424681-19424700 | None:intergenic | 50.0% | |
| AGAATAGCAGCGATTGGGAG+AGG | + | chr6_4:19424867-19424886 | None:intergenic | 50.0% | |
| GAGAGGAGAATAGCAGCGAT+TGG | + | chr6_4:19424873-19424892 | None:intergenic | 50.0% | |
| TCTCACAGTGGTTTACGGTG+AGG | + | chr6_4:19424963-19424982 | None:intergenic | 50.0% | |
| CAATCTCACAGCTCTCACAG+TGG | + | chr6_4:19424975-19424994 | None:intergenic | 50.0% | |
| ! | CGGAAGAACGATTCTGGCTA+TGG | - | chr6_4:19425277-19425296 | Msa0980860:intron | 50.0% |
| GGTAACAAACAGCGAGTGTC+AGG | - | chr6_4:19425324-19425343 | Msa0980860:intron | 50.0% | |
| GCCACTACCACCAATATGCA+TGG | + | chr6_4:19426177-19426196 | None:intergenic | 50.0% | |
| GTGATTAAGGTTCTGCAGCC+TGG | - | chr6_4:19426914-19426933 | Msa0980860:intron | 50.0% | |
| GCGAAGAAATGCAACGCTTG+AGG | - | chr6_4:19427021-19427040 | Msa0980860:intron | 50.0% | |
| GCACTGTTAGAACACAGGTG+TGG | + | chr6_4:19427267-19427286 | None:intergenic | 50.0% | |
| AACGTCGAGACTCAGAGCCA+TGG | + | chr6_4:19420698-19420717 | None:intergenic | 55.0% | |
| TGTAGTTGTGGCGGCAGTTG+CGG | + | chr6_4:19420816-19420835 | None:intergenic | 55.0% | |
| TTGCACAGGGCTCTTGCACA+CGG | + | chr6_4:19421076-19421095 | None:intergenic | 55.0% | |
| TGGGGTTTGTCTCGGCTGTT+TGG | - | chr6_4:19422985-19423004 | Msa0980860:intron | 55.0% | |
| GGGGTTTGTCTCGGCTGTTT+GGG | - | chr6_4:19422986-19423005 | Msa0980860:intron | 55.0% | |
| CTATGTGTGGTCATGGCCTG+TGG | - | chr6_4:19423077-19423096 | Msa0980860:CDS | 55.0% | |
| TGGTGTGCAATGTAGCCTGG+AGG | - | chr6_4:19423498-19423517 | Msa0980860:intron | 55.0% | |
| GGTGTGCAATGTAGCCTGGA+GGG | - | chr6_4:19423499-19423518 | Msa0980860:intron | 55.0% | |
| AGGTCTGTTGTGGACAACCC+AGG | - | chr6_4:19423553-19423572 | Msa0980860:intron | 55.0% | |
| GGTTGCGCTAACACAGACCT+GGG | + | chr6_4:19423573-19423592 | None:intergenic | 55.0% | |
| AGGTTGCGCTAACACAGACC+TGG | + | chr6_4:19423574-19423593 | None:intergenic | 55.0% | |
| TTAGCGCAACCTGCTGCTGT+TGG | - | chr6_4:19423582-19423601 | Msa0980860:intron | 55.0% | |
| TAGCGCAACCTGCTGCTGTT+GGG | - | chr6_4:19423583-19423602 | Msa0980860:intron | 55.0% | |
| GGGGGAGTAGGTGATGTTCA+TGG | - | chr6_4:19423603-19423622 | Msa0980860:intron | 55.0% | |
| TTTGTGCAGCCTGCTGCCAT+TGG | - | chr6_4:19423640-19423659 | Msa0980860:intron | 55.0% | |
| TTGTGCAGCCTGCTGCCATT+GGG | - | chr6_4:19423641-19423660 | Msa0980860:intron | 55.0% | |
| AATACACCCCCAATGGCAGC+AGG | + | chr6_4:19423652-19423671 | None:intergenic | 55.0% | |
| GAGTACGGTGGAGAGTGATG+GGG | + | chr6_4:19424680-19424699 | None:intergenic | 55.0% | |
| ! | GAGAGTACGGTGGAGAGTGA+TGG | + | chr6_4:19424682-19424701 | None:intergenic | 55.0% |
| ! | GAGAGAGAGAGAGAGTACGG+TGG | + | chr6_4:19424692-19424711 | None:intergenic | 55.0% |
| CAGCGATTGGGAGAGGAGAA+AGG | + | chr6_4:19424860-19424879 | None:intergenic | 55.0% | |
| GTTCTGCAGCCTGGACCATT+AGG | - | chr6_4:19426923-19426942 | Msa0980860:intron | 55.0% | |
| !! | GTGATTAAGGTGCTGCAGCC+TGG | - | chr6_4:19427612-19427631 | Msa0980860:five_prime_UTR | 55.0% |
| GTGAAGGGAGGGGATGAGGA+AGG | + | chr6_4:19420652-19420671 | None:intergenic | 60.0% | |
| TCCTCATCCCCTCCCTTCAC+CGG | - | chr6_4:19420652-19420671 | Msa0980860:CDS | 60.0% | |
| TCGGCGAGATGTGCGTGGAT+CGG | + | chr6_4:19420791-19420810 | None:intergenic | 60.0% | |
| AGCGCAACCTGCTGCTGTTG+GGG | - | chr6_4:19423584-19423603 | Msa0980860:intron | 60.0% | |
| TGTGCAGCCTGCTGCCATTG+GGG | - | chr6_4:19423642-19423661 | Msa0980860:intron | 60.0% | |
| AAATGACCCGTGCGGCAGCA+CGG | - | chr6_4:19424397-19424416 | Msa0980860:intron | 60.0% | |
| ! | TTTTCACCCGTGCTGCCGCA+CGG | + | chr6_4:19424407-19424426 | None:intergenic | 60.0% |
| ! | CGCCGGAATCTGACTCGATG+AGG | + | chr6_4:19424939-19424958 | None:intergenic | 60.0% |
| GTGGTTTACGGTGAGGTCGC+CGG | + | chr6_4:19424956-19424975 | None:intergenic | 60.0% | |
| GTGCTGCAGCCTGGACCATT+AGG | - | chr6_4:19427621-19427640 | Msa0980860:five_prime_UTR | 60.0% | |
| TCATCCCCTCCCTTCACCGG+CGG | - | chr6_4:19420655-19420674 | Msa0980860:CDS | 65.0% | |
| TTCACCGCCGGTGAAGGGAG+GGG | + | chr6_4:19420662-19420681 | None:intergenic | 65.0% | |
| GTTCACCGCCGGTGAAGGGA+GGG | + | chr6_4:19420663-19420682 | None:intergenic | 65.0% | |
| AGTTCACCGCCGGTGAAGGG+AGG | + | chr6_4:19420664-19420683 | None:intergenic | 65.0% | |
| CCGAGTTCACCGCCGGTGAA+GGG | + | chr6_4:19420667-19420686 | None:intergenic | 65.0% | |
| CCCTTCACCGGCGGTGAACT+CGG | - | chr6_4:19420664-19420683 | Msa0980860:CDS | 65.0% | |
| TTCACCGGCGGTGAACTCGG+CGG | - | chr6_4:19420667-19420686 | Msa0980860:CDS | 65.0% | |
| TGAACTCGGCGGCAGGTCCA+TGG | - | chr6_4:19420678-19420697 | Msa0980860:CDS | 65.0% | |
| TGTGGCGGCAGTTGCGGAGT+CGG | + | chr6_4:19420810-19420829 | None:intergenic | 65.0% | |
| GCGCAACCTGCTGCTGTTGG+GGG | - | chr6_4:19423585-19423604 | Msa0980860:intron | 65.0% | |
| CCTACTCCCCCAACAGCAGC+AGG | + | chr6_4:19423594-19423613 | None:intergenic | 65.0% | |
| CCTGCTGCTGTTGGGGGAGT+AGG | - | chr6_4:19423591-19423610 | Msa0980860:intron | 65.0% | |
| GTGCAGCCTGCTGCCATTGG+GGG | - | chr6_4:19423643-19423662 | Msa0980860:intron | 65.0% | |
| AATGACCCGTGCGGCAGCAC+GGG | - | chr6_4:19424398-19424417 | Msa0980860:intron | 65.0% | |
| TTTCACCCGTGCTGCCGCAC+GGG | + | chr6_4:19424406-19424425 | None:intergenic | 65.0% | |
| GCCGGTGAAGGGAGGGGATG+AGG | + | chr6_4:19420656-19420675 | None:intergenic | 70.0% | |
| GCCGAGTTCACCGCCGGTGA+AGG | + | chr6_4:19420668-19420687 | None:intergenic | 70.0% | |
| CGGAGTCGGCGAGATGTGCG+TGG | + | chr6_4:19420796-19420815 | None:intergenic | 70.0% | |
| CCTGCCGCCGAGTTCACCGC+CGG | + | chr6_4:19420674-19420693 | None:intergenic | 75.0% | |
| ! | CCGGCGGTGAACTCGGCGGC+AGG | - | chr6_4:19420671-19420690 | Msa0980860:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 19420581 | 19427782 | 19420581 | ID=Msa0980860;Name=Msa0980860 |
| chr6_4 | mRNA | 19420581 | 19427782 | 19420581 | ID=Msa0980860-mRNA-1;Parent=Msa0980860;Name=Msa0980860-mRNA-1;_AED=0.49;_eAED=0.49;_QI=256|0|0.28|0.42|0|0.28|7|0|164 |
| chr6_4 | exon | 19420581 | 19420776 | 19420581 | ID=Msa0980860-mRNA-1:exon:6077;Parent=Msa0980860-mRNA-1 |
| chr6_4 | exon | 19420880 | 19420884 | 19420880 | ID=Msa0980860-mRNA-1:exon:6076;Parent=Msa0980860-mRNA-1 |
| chr6_4 | exon | 19423039 | 19423139 | 19423039 | ID=Msa0980860-mRNA-1:exon:6075;Parent=Msa0980860-mRNA-1 |
| chr6_4 | exon | 19424789 | 19424868 | 19424789 | ID=Msa0980860-mRNA-1:exon:6074;Parent=Msa0980860-mRNA-1 |
| chr6_4 | exon | 19426463 | 19426485 | 19426463 | ID=Msa0980860-mRNA-1:exon:6073;Parent=Msa0980860-mRNA-1 |
| chr6_4 | exon | 19426600 | 19426667 | 19426600 | ID=Msa0980860-mRNA-1:exon:6072;Parent=Msa0980860-mRNA-1 |
| chr6_4 | exon | 19427505 | 19427782 | 19427505 | ID=Msa0980860-mRNA-1:exon:6071;Parent=Msa0980860-mRNA-1 |
| chr6_4 | five_prime_UTR | 19427527 | 19427782 | 19427527 | ID=Msa0980860-mRNA-1:five_prime_utr;Parent=Msa0980860-mRNA-1 |
| chr6_4 | CDS | 19427505 | 19427526 | 19427505 | ID=Msa0980860-mRNA-1:cds;Parent=Msa0980860-mRNA-1 |
| chr6_4 | CDS | 19426600 | 19426667 | 19426600 | ID=Msa0980860-mRNA-1:cds;Parent=Msa0980860-mRNA-1 |
| chr6_4 | CDS | 19426463 | 19426485 | 19426463 | ID=Msa0980860-mRNA-1:cds;Parent=Msa0980860-mRNA-1 |
| chr6_4 | CDS | 19424789 | 19424868 | 19424789 | ID=Msa0980860-mRNA-1:cds;Parent=Msa0980860-mRNA-1 |
| chr6_4 | CDS | 19423039 | 19423139 | 19423039 | ID=Msa0980860-mRNA-1:cds;Parent=Msa0980860-mRNA-1 |
| chr6_4 | CDS | 19420880 | 19420884 | 19420880 | ID=Msa0980860-mRNA-1:cds;Parent=Msa0980860-mRNA-1 |
| chr6_4 | CDS | 19420581 | 19420776 | 19420581 | ID=Msa0980860-mRNA-1:cds;Parent=Msa0980860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
