Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0090320 | Msa0901020 | 0.801305 | 9.586098e-49 | -8.615850e-47 |
| Msa0748970 | Msa0901020 | 0.883322 | 4.950503e-71 | -8.615850e-47 |
| Msa0804850 | Msa0901020 | 0.808447 | 3.083932e-50 | -8.615850e-47 |
| Msa0814870 | Msa0901020 | 0.854643 | 1.073879e-61 | -8.615850e-47 |
| Msa0826320 | Msa0901020 | 0.814202 | 1.737596e-51 | -8.615850e-47 |
| Msa0137640 | Msa0901020 | 0.806945 | 6.429687e-50 | -8.615850e-47 |
| Msa0182740 | Msa0901020 | 0.802332 | 5.899904e-49 | -8.615850e-47 |
| Msa0434000 | Msa0901020 | 0.834263 | 3.315278e-56 | -8.615850e-47 |
| Msa0342750 | Msa0901020 | 0.870380 | 1.524177e-66 | -8.615850e-47 |
| Msa0342810 | Msa0901020 | 0.849157 | 3.872205e-60 | -8.615850e-47 |
| Msa0537720 | Msa0901020 | 0.833147 | 6.300266e-56 | -8.615850e-47 |
| Msa0559800 | Msa0901020 | -0.806261 | 8.964480e-50 | -8.615850e-47 |
| Msa0900910 | Msa0901020 | 0.846321 | 2.338194e-59 | -8.615850e-47 |
| Msa0900970 | Msa0901020 | 0.843454 | 1.387121e-58 | -8.615850e-47 |
| Msa0900980 | Msa0901020 | 0.821883 | 3.185367e-53 | -8.615850e-47 |
| Msa0901020 | Msa0901070 | 0.871533 | 6.354389e-67 | -8.615850e-47 |
| Msa0901020 | Msa0901090 | 0.812107 | 5.007259e-51 | -8.615850e-47 |
| Msa0901020 | Msa0913060 | 0.822885 | 1.864293e-53 | -8.615850e-47 |
| Msa0901020 | Msa0966770 | 0.893416 | 6.416687e-75 | -8.615850e-47 |
| Msa0901020 | Msa0967280 | 0.861239 | 1.179515e-63 | -8.615850e-47 |
| Msa0901020 | Msa0980860 | -0.833361 | 5.573675e-56 | -8.615850e-47 |
| Msa0901020 | Msa0989620 | 0.806392 | 8.410324e-50 | -8.615850e-47 |
| Msa0901020 | Msa1069990 | 0.802891 | 4.523673e-49 | -8.615850e-47 |
| Msa0901020 | Msa1120740 | 0.801412 | 9.115990e-49 | -8.615850e-47 |
| Msa0901020 | Msa1241130 | -0.825219 | 5.281300e-54 | -8.615850e-47 |
| Msa0901020 | Msa1248300 | 0.830806 | 2.386124e-55 | -8.615850e-47 |
| Msa0901020 | Msa1248370 | 0.816672 | 4.901423e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 9 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGGAACTTCAGTTGTTT+TGG | 0.218511 | 6_1:-97283772 | None:intergenic |
| TAAGAAGGATATTCTTGATT+TGG | 0.289956 | 6_1:+97283626 | Msa0901020:CDS |
| ATTATATTTCCCTCCTACTT+TGG | 0.298575 | 6_1:-97283789 | None:intergenic |
| TATAGTGGATACGAATGATA+TGG | 0.369386 | 6_1:+97279570 | None:intergenic |
| TGAACGTGAGGCTGCAATAT+TGG | 0.373269 | 6_1:+97283653 | Msa0901020:CDS |
| AACAACTGAAGTTCCAAAGT+AGG | 0.570927 | 6_1:+97283776 | Msa0901020:CDS |
| TAAAACCATATCAGGTTCAG+AGG | 0.575619 | 6_1:+97279693 | Msa0901020:intron |
| TAAAACCATATCAGGTTCAG+AGG | 0.575619 | 6_1:+97280082 | Msa0901020:intron |
| TGATTTGGTTGCTGAACGTG+AGG | 0.603299 | 6_1:+97283641 | Msa0901020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTAATTTTTAATTTTAAC+TGG | + | chr6_1:97281252-97281271 | Msa0901020:intron | 10.0% |
| !!! | GTATTGATTTATCTATTATT+AGG | + | chr6_1:97279814-97279833 | Msa0901020:intron | 15.0% |
| !! | AGAAAATATATCTTATATAG+TGG | + | chr6_1:97280513-97280532 | Msa0901020:intron | 15.0% |
| !!! | GTATTGATTTATCTATTATT+AGG | + | chr6_1:97279814-97279833 | Msa0901020:intron | 15.0% |
| !! | AGAAAATATATCTTATATAG+TGG | + | chr6_1:97280513-97280532 | Msa0901020:intron | 15.0% |
| !!! | GTATTGATTTATCTATTATT+AGG | + | chr6_1:97279814-97279833 | Msa0901020:intron | 15.0% |
| !! | AAAAGTTATACGATAAAAAT+AGG | - | chr6_1:97283095-97283114 | None:intergenic | 15.0% |
| !! | AATAAATAGTTAGTGAAATA+TGG | - | chr6_1:97283126-97283145 | None:intergenic | 15.0% |
| !! | TAACAAAGTTTATTATTATG+TGG | + | chr6_1:97283507-97283526 | Msa0901020:intron | 15.0% |
| !! | AAAACAAAAACATGATATGA+TGG | - | chr6_1:97279729-97279748 | None:intergenic | 20.0% |
| !!! | GTATTGATTTATCTATCATT+AGG | - | chr6_1:97280203-97280222 | None:intergenic | 20.0% |
| !! | AGAAAATATATCTTGTATAG+TGG | + | chr6_1:97279944-97279963 | Msa0901020:intron | 20.0% |
| !! | AAAAGTTATATGACAACAAT+AGG | - | chr6_1:97280146-97280165 | None:intergenic | 20.0% |
| !! | ACAAAATAGTTAGTGAAATA+TGG | - | chr6_1:97280177-97280196 | None:intergenic | 20.0% |
| !!! | GTATTGATTTATCTATCATT+AGG | + | chr6_1:97280203-97280222 | Msa0901020:intron | 20.0% |
| !!! | GTATTGATTTATCTATCATT+AGG | - | chr6_1:97280203-97280222 | None:intergenic | 20.0% |
| !!! | AAATCAATACAATCGTTTTT+AGG | - | chr6_1:97280373-97280392 | None:intergenic | 20.0% |
| !!! | GTATTGATTTATCTATCATT+AGG | + | chr6_1:97280203-97280222 | Msa0901020:intron | 20.0% |
| !! | AAAAGTTATATGACAACAAT+AGG | - | chr6_1:97280146-97280165 | None:intergenic | 20.0% |
| !! | ACAAAATAGTTAGTGAAATA+TGG | - | chr6_1:97280177-97280196 | None:intergenic | 20.0% |
| !!! | GTATTGATTTATCTATCATT+AGG | + | chr6_1:97280203-97280222 | Msa0901020:intron | 20.0% |
| !!! | GTATTGATTTATCTATCATT+AGG | - | chr6_1:97280203-97280222 | None:intergenic | 20.0% |
| !!! | AAATCAATACAATCGTTTTT+AGG | - | chr6_1:97280373-97280392 | None:intergenic | 20.0% |
| !!! | GTATTGATTTATCTATCATT+AGG | + | chr6_1:97280203-97280222 | Msa0901020:intron | 20.0% |
| !! | AGAAAATATATCTTGTATAG+TGG | + | chr6_1:97279944-97279963 | Msa0901020:intron | 20.0% |
| !! | TAAATTTATGTTTGTTTGCA+TGG | + | chr6_1:97281358-97281377 | Msa0901020:intron | 20.0% |
| !! | CTATTTAAATTAGGATGAAT+GGG | + | chr6_1:97281557-97281576 | Msa0901020:intron | 20.0% |
| !! | TTCATATGAACATATATGAT+AGG | + | chr6_1:97281607-97281626 | Msa0901020:intron | 20.0% |
| !!! | TTTTTTGTTACACCAATTTT+GGG | + | chr6_1:97281974-97281993 | Msa0901020:intron | 20.0% |
| !!! | TTTTTTGATACACCAATTTT+GGG | + | chr6_1:97282033-97282052 | Msa0901020:intron | 20.0% |
| !!! | AAATCAATACATGTGTTTTT+AGG | + | chr6_1:97282477-97282496 | Msa0901020:intron | 20.0% |
| !! | AAAACAAAAACATGATATGA+TGG | - | chr6_1:97279729-97279748 | None:intergenic | 20.0% |
| !!! | GTATTGATTTATCTATCATT+AGG | - | chr6_1:97280203-97280222 | None:intergenic | 20.0% |
| !! | AGAAAATATATCTTGTATAG+TGG | + | chr6_1:97279944-97279963 | Msa0901020:intron | 20.0% |
| !! | ATATTACTATTTAATCCAAC+AGG | + | chr6_1:97283374-97283393 | Msa0901020:intron | 20.0% |
| !! | TATTAAAGAACTCAAATATG+CGG | - | chr6_1:97283579-97283598 | None:intergenic | 20.0% |
| ! | AAAAGTTATACGACAACAAT+AGG | - | chr6_1:97279757-97279776 | None:intergenic | 25.0% |
| ! | ATACGAAAGAACAAAATAGT+CGG | - | chr6_1:97279798-97279817 | None:intergenic | 25.0% |
| !! | AAATCAATACATGCGTTTTT+AGG | + | chr6_1:97279912-97279931 | Msa0901020:intron | 25.0% |
| ! | AAAACGAAAACATGATATGA+TGG | - | chr6_1:97280118-97280137 | None:intergenic | 25.0% |
| ! | ATCATTAGGTATCTATCATT+AGG | + | chr6_1:97280217-97280236 | Msa0901020:intron | 25.0% |
| !!! | AATTTTTTCACGAGTTTGAT+TGG | + | chr6_1:97280422-97280441 | Msa0901020:intron | 25.0% |
| !!! | GTATTGATTTCTCTATCATT+AGG | - | chr6_1:97280471-97280490 | None:intergenic | 25.0% |
| !! | AAATCAATACATGCGTTTTT+AGG | + | chr6_1:97279912-97279931 | Msa0901020:intron | 25.0% |
| ! | AAAACGAAAACATGATATGA+TGG | - | chr6_1:97280118-97280137 | None:intergenic | 25.0% |
| ! | ATCATTAGGTATCTATCATT+AGG | + | chr6_1:97280217-97280236 | Msa0901020:intron | 25.0% |
| !!! | AATTTTTTCACGAGTTTGAT+TGG | + | chr6_1:97280422-97280441 | Msa0901020:intron | 25.0% |
| !!! | GTATTGATTTCTCTATCATT+AGG | - | chr6_1:97280471-97280490 | None:intergenic | 25.0% |
| !! | AAATCAATACATGCGTTTTT+AGG | + | chr6_1:97279912-97279931 | Msa0901020:intron | 25.0% |
| ! | TTATATCAGCTGAATAATTG+CGG | + | chr6_1:97281329-97281348 | Msa0901020:intron | 25.0% |
| !! | GAAATTCGTAGTTTGTAAAT+CGG | + | chr6_1:97281506-97281525 | Msa0901020:intron | 25.0% |
| ! | GTTTGCTTCCTATTTAAATT+AGG | + | chr6_1:97281548-97281567 | Msa0901020:intron | 25.0% |
| ! | CCATTCATCCTAATTTAAAT+AGG | - | chr6_1:97281559-97281578 | None:intergenic | 25.0% |
| ! | CCTATTTAAATTAGGATGAA+TGG | + | chr6_1:97281556-97281575 | Msa0901020:intron | 25.0% |
| ! | AAGTAAAATTAAGACCTTGA+TGG | - | chr6_1:97281588-97281607 | None:intergenic | 25.0% |
| ! | TGGCTACTAAGAAAAATATA+AGG | - | chr6_1:97281828-97281847 | None:intergenic | 25.0% |
| !! | TTTGTATTGGTAAGATAGAA+TGG | + | chr6_1:97281863-97281882 | Msa0901020:intron | 25.0% |
| ! | TGGATCATTGTATAAAAGAA+TGG | + | chr6_1:97281901-97281920 | Msa0901020:intron | 25.0% |
| ! | AATTGGTGTAACAAAAAAGA+AGG | - | chr6_1:97281972-97281991 | None:intergenic | 25.0% |
| !!! | CTTTTTTGTTACACCAATTT+TGG | + | chr6_1:97281973-97281992 | Msa0901020:intron | 25.0% |
| ! | AATTGGTGTATCAAAAAAGA+AGG | - | chr6_1:97282031-97282050 | None:intergenic | 25.0% |
| !!! | CTTTTTTGATACACCAATTT+TGG | + | chr6_1:97282032-97282051 | Msa0901020:intron | 25.0% |
| ! | ATGAAGATAAAAAGCTAACA+GGG | - | chr6_1:97282076-97282095 | None:intergenic | 25.0% |
| ! | AATGAAGATAAAAAGCTAAC+AGG | - | chr6_1:97282077-97282096 | None:intergenic | 25.0% |
| !! | TAGAGATCATGTTTCTATAT+TGG | + | chr6_1:97282144-97282163 | Msa0901020:intron | 25.0% |
| ! | AAAGACAAATATTGAGACAT+GGG | - | chr6_1:97282250-97282269 | None:intergenic | 25.0% |
| ! | AAAAGACAAATATTGAGACA+TGG | - | chr6_1:97282251-97282270 | None:intergenic | 25.0% |
| ! | AAAAGTTATACGACAACAAT+AGG | - | chr6_1:97279757-97279776 | None:intergenic | 25.0% |
| ! | ATACGAAAGAACAAAATAGT+CGG | - | chr6_1:97279798-97279817 | None:intergenic | 25.0% |
| !! | AAATCAATACATGCGTTTTT+AGG | + | chr6_1:97279912-97279931 | Msa0901020:intron | 25.0% |
| ! | AATCAAAAACGAAAACATGA+TGG | - | chr6_1:97280123-97280142 | None:intergenic | 25.0% |
| ! | GAAACTAAAATTGTGAAACT+AGG | - | chr6_1:97283350-97283369 | None:intergenic | 25.0% |
| ! | GAAACTTGAATCAAAAACAT+TGG | - | chr6_1:97283539-97283558 | None:intergenic | 25.0% |
| ! | TAAGAAGGATATTCTTGATT+TGG | + | chr6_1:97283626-97283645 | Msa0901020:CDS | 25.0% |
| TTCAACAATAAGTCAAGCTA+CGG | - | chr6_1:97279633-97279652 | None:intergenic | 30.0% | |
| GTGTTTGATAAAACCATATC+AGG | + | chr6_1:97279685-97279704 | Msa0901020:intron | 30.0% | |
| ACAAAATAGTCGGTGAAATA+TGG | - | chr6_1:97279788-97279807 | None:intergenic | 30.0% | |
| !!! | ACTTTTTTCACGAGTTTGAT+TGG | + | chr6_1:97279853-97279872 | Msa0901020:intron | 30.0% |
| !! | TATAGTGGATTCGTATGATA+TGG | + | chr6_1:97279959-97279978 | Msa0901020:intron | 30.0% |
| TTCAACAATAAGTCAAGCTA+CGG | - | chr6_1:97279633-97279652 | None:intergenic | 30.0% | |
| GTGTTTGATAAAACCATATC+AGG | + | chr6_1:97279685-97279704 | Msa0901020:intron | 30.0% | |
| ACTTCTTTCATGAGTTTGAT+TGG | + | chr6_1:97280256-97280275 | Msa0901020:intron | 30.0% | |
| CAAGCAACAAAACTAATGAT+TGG | + | chr6_1:97280324-97280343 | Msa0901020:intron | 30.0% | |
| !! | TTGATTGGTTGATCGTTTTT+AGG | + | chr6_1:97280437-97280456 | Msa0901020:intron | 30.0% |
| !! | TATAGTGGATACGAATGATA+TGG | + | chr6_1:97280528-97280547 | Msa0901020:intron | 30.0% |
| ACGAATGATATGGTATTTGA+TGG | + | chr6_1:97280538-97280557 | Msa0901020:intron | 30.0% | |
| TTCAACATTAAGTCAAGCTA+CGG | - | chr6_1:97280591-97280610 | None:intergenic | 30.0% | |
| GTGTTTGATAAAACCATATC+AGG | + | chr6_1:97279685-97279704 | Msa0901020:intron | 30.0% | |
| ACTTCTTTCATGAGTTTGAT+TGG | + | chr6_1:97280256-97280275 | Msa0901020:intron | 30.0% | |
| CAAGCAACAAAACTAATGAT+TGG | + | chr6_1:97280324-97280343 | Msa0901020:intron | 30.0% | |
| !! | TTTGATTGGTTGATCGTTTT+AGG | + | chr6_1:97280436-97280455 | Msa0901020:intron | 30.0% |
| !! | TATAGTGGATTCGTATGATA+TGG | + | chr6_1:97279959-97279978 | Msa0901020:intron | 30.0% |
| TTCAACAATAAGTCAAGCTA+CGG | - | chr6_1:97279633-97279652 | None:intergenic | 30.0% | |
| !! | TTAACTGGCTTTAAGAACTT+AGG | + | chr6_1:97281267-97281286 | Msa0901020:intron | 30.0% |
| TATATCAGCTGAATAATTGC+GGG | + | chr6_1:97281330-97281349 | Msa0901020:intron | 30.0% | |
| TTTCACTAACTACATGTGTT+TGG | - | chr6_1:97281490-97281509 | None:intergenic | 30.0% | |
| AAATCGGCTAAATTATTCGT+AGG | + | chr6_1:97281522-97281541 | Msa0901020:intron | 30.0% | |
| ! | AGACATGTGAAATGAGTTTT+TGG | + | chr6_1:97281657-97281676 | Msa0901020:intron | 30.0% |
| AAAGCCTTAGCAATATCTTA+AGG | - | chr6_1:97281727-97281746 | None:intergenic | 30.0% | |
| TTGGTAAGATAGAATGGAAT+AGG | + | chr6_1:97281869-97281888 | Msa0901020:intron | 30.0% | |
| TGGTAAGATAGAATGGAATA+GGG | + | chr6_1:97281870-97281889 | Msa0901020:intron | 30.0% | |
| TGAAGATAAAAAGCTAACAG+GGG | - | chr6_1:97282075-97282094 | None:intergenic | 30.0% | |
| TAGAAACATGATCTCTACAA+GGG | - | chr6_1:97282141-97282160 | None:intergenic | 30.0% | |
| ATAGAAACATGATCTCTACA+AGG | - | chr6_1:97282142-97282161 | None:intergenic | 30.0% | |
| ! | TGGATCTTTCAATTTGTTTC+TGG | + | chr6_1:97282212-97282231 | Msa0901020:intron | 30.0% |
| ! | AATTTGCAAAAATTGGTAGC+TGG | - | chr6_1:97282299-97282318 | None:intergenic | 30.0% |
| AATCGGGAATTTGCAAAAAT+TGG | - | chr6_1:97282306-97282325 | None:intergenic | 30.0% | |
| !!! | ACTTTTTTCACGAGTTTGAT+TGG | + | chr6_1:97279853-97279872 | Msa0901020:intron | 30.0% |
| !! | TATAGTGGATACGAATGATA+TGG | + | chr6_1:97280528-97280547 | Msa0901020:intron | 30.0% |
| TTCAACAATAAGTCAAGCTA+CGG | - | chr6_1:97279633-97279652 | None:intergenic | 30.0% | |
| GTGTTTGATAAAACCATATC+AGG | + | chr6_1:97279685-97279704 | Msa0901020:intron | 30.0% | |
| ACAAAATAGTCGGTGAAATA+TGG | - | chr6_1:97279788-97279807 | None:intergenic | 30.0% | |
| !!! | ACTTTTTTCACGAGTTTGAT+TGG | + | chr6_1:97279853-97279872 | Msa0901020:intron | 30.0% |
| !! | TATAGTGGATTCGTATGATA+TGG | + | chr6_1:97279959-97279978 | Msa0901020:intron | 30.0% |
| TTCAACAATAAGTCAAGCTA+CGG | - | chr6_1:97279633-97279652 | None:intergenic | 30.0% | |
| GTGTTTGATAAAACCATATC+AGG | + | chr6_1:97279685-97279704 | Msa0901020:intron | 30.0% | |
| TTGTGAGATGTCAAAAGATT+GGG | - | chr6_1:97283186-97283205 | None:intergenic | 30.0% | |
| TGAATCAAAAACATTGGTGA+AGG | - | chr6_1:97283533-97283552 | None:intergenic | 30.0% | |
| ATATTAATCTATGAACCAGC+AGG | + | chr6_1:97283596-97283615 | Msa0901020:intron | 30.0% | |
| TAAAACCATATCAGGTTCAG+AGG | + | chr6_1:97279693-97279712 | Msa0901020:intron | 35.0% | |
| AAAAACCTCTGAACCTGATA+TGG | - | chr6_1:97279701-97279720 | None:intergenic | 35.0% | |
| ! | TTTTTCACGAGTTTGATTGG+TGG | + | chr6_1:97279856-97279875 | Msa0901020:intron | 35.0% |
| !! | TTGATTGGTGGATCGTTTTT+AGG | + | chr6_1:97279868-97279887 | Msa0901020:intron | 35.0% |
| TAAAACCATATCAGGTTCAG+AGG | + | chr6_1:97279693-97279712 | Msa0901020:intron | 35.0% | |
| AAAAACCTCTGAACCTGATA+TGG | - | chr6_1:97279701-97279720 | None:intergenic | 35.0% | |
| TCTTTCATGAGTTTGATTGG+TGG | + | chr6_1:97280259-97280278 | Msa0901020:intron | 35.0% | |
| !! | TTGATTGGTGGATCGTTTTT+AGG | + | chr6_1:97279868-97279887 | Msa0901020:intron | 35.0% |
| GCAACAAAACTAATGATTGG+TGG | + | chr6_1:97280327-97280346 | Msa0901020:intron | 35.0% | |
| !! | ATGATTGGTGGATCGTTTTT+AGG | + | chr6_1:97280339-97280358 | Msa0901020:intron | 35.0% |
| TAAAACCATATCAGGTTCAG+AGG | + | chr6_1:97279693-97279712 | Msa0901020:intron | 35.0% | |
| AAAAACCTCTGAACCTGATA+TGG | - | chr6_1:97279701-97279720 | None:intergenic | 35.0% | |
| TCTTTCATGAGTTTGATTGG+TGG | + | chr6_1:97280259-97280278 | Msa0901020:intron | 35.0% | |
| !! | TTGATTGGTGGATCGTTTTT+AGG | + | chr6_1:97279868-97279887 | Msa0901020:intron | 35.0% |
| GCAACAAAACTAATGATTGG+TGG | + | chr6_1:97280327-97280346 | Msa0901020:intron | 35.0% | |
| !! | ATGATTGGTGGATCGTTTTT+AGG | + | chr6_1:97280339-97280358 | Msa0901020:intron | 35.0% |
| ATATCAGCTGAATAATTGCG+GGG | + | chr6_1:97281331-97281350 | Msa0901020:intron | 35.0% | |
| !!! | AGGCTGAATTTTTTAGCTTC+AGG | + | chr6_1:97281411-97281430 | Msa0901020:intron | 35.0% |
| !!! | TGGATTAGCTTTTGCTTTGA+TGG | - | chr6_1:97281470-97281489 | None:intergenic | 35.0% |
| ! | ATGAATGGGTTTATCCATCA+AGG | + | chr6_1:97281571-97281590 | Msa0901020:intron | 35.0% |
| AAATAGCAACCTGTGTCTAT+GGG | + | chr6_1:97281681-97281700 | Msa0901020:intron | 35.0% | |
| !! | CTAGCCTTAAGATATTGCTA+AGG | + | chr6_1:97281720-97281739 | Msa0901020:intron | 35.0% |
| !!! | AGTTCTGTTTTGTTTCCTGT+AGG | + | chr6_1:97281751-97281770 | Msa0901020:intron | 35.0% |
| GATAGAATGGAATAGGGAAA+TGG | + | chr6_1:97281876-97281895 | Msa0901020:intron | 35.0% | |
| AATGGAATAGGGAAATGGAT+TGG | + | chr6_1:97281881-97281900 | Msa0901020:intron | 35.0% | |
| GTGTAACAAAAAAGAAGGCA+AGG | - | chr6_1:97281967-97281986 | None:intergenic | 35.0% | |
| GATTTCATTGCTCCCAAAAT+TGG | - | chr6_1:97281989-97282008 | None:intergenic | 35.0% | |
| GTGTATCAAAAAAGAAGGCA+AGG | - | chr6_1:97282026-97282045 | None:intergenic | 35.0% | |
| GATTTCTTTGCTCCCAAAAT+TGG | - | chr6_1:97282048-97282067 | None:intergenic | 35.0% | |
| GAAAGATCCATGCGATAAAA+GGG | - | chr6_1:97282202-97282221 | None:intergenic | 35.0% | |
| TGAAAGATCCATGCGATAAA+AGG | - | chr6_1:97282203-97282222 | None:intergenic | 35.0% | |
| ! | AAAGTATCAGCAAGACAATC+GGG | - | chr6_1:97282322-97282341 | None:intergenic | 35.0% |
| !! | GAAAGTATCAGCAAGACAAT+CGG | - | chr6_1:97282323-97282342 | None:intergenic | 35.0% |
| ! | TTTTTCACGAGTTTGATTGG+TGG | + | chr6_1:97279856-97279875 | Msa0901020:intron | 35.0% |
| !! | TTGATTGGTGGATCGTTTTT+AGG | + | chr6_1:97279868-97279887 | Msa0901020:intron | 35.0% |
| TAAAACCATATCAGGTTCAG+AGG | + | chr6_1:97279693-97279712 | Msa0901020:intron | 35.0% | |
| AAAAACCTCTGAACCTGATA+TGG | - | chr6_1:97279701-97279720 | None:intergenic | 35.0% | |
| ! | TTTTTCACGAGTTTGATTGG+TGG | + | chr6_1:97279856-97279875 | Msa0901020:intron | 35.0% |
| !! | TTGATTGGTGGATCGTTTTT+AGG | + | chr6_1:97279868-97279887 | Msa0901020:intron | 35.0% |
| TAAAACCATATCAGGTTCAG+AGG | + | chr6_1:97279693-97279712 | Msa0901020:intron | 35.0% | |
| AAAAACCTCTGAACCTGATA+TGG | - | chr6_1:97279701-97279720 | None:intergenic | 35.0% | |
| TGTGAGATGTCAAAAGATTG+GGG | - | chr6_1:97283185-97283204 | None:intergenic | 35.0% | |
| CTTGTGAGATGTCAAAAGAT+TGG | - | chr6_1:97283187-97283206 | None:intergenic | 35.0% | |
| !!! | TTGGGAGTTTTTGAGTGATA+CGG | - | chr6_1:97283256-97283275 | None:intergenic | 35.0% |
| ! | GGTTTTTCTCAAAGGATAGT+TGG | - | chr6_1:97283290-97283309 | None:intergenic | 35.0% |
| !!! | TTGGCTTTGGTTTTTCTCAA+AGG | - | chr6_1:97283298-97283317 | None:intergenic | 35.0% |
| TTTGAGAAAAACCAAAGCCA+AGG | + | chr6_1:97283297-97283316 | Msa0901020:intron | 35.0% | |
| TGATCAAGTGAATGCTGAAT+TGG | + | chr6_1:97283428-97283447 | Msa0901020:intron | 35.0% | |
| !!! | AAACTCTGGCAAGTTTTTTC+AGG | + | chr6_1:97283478-97283497 | Msa0901020:intron | 35.0% |
| !!! | CTTTGGAACTTCAGTTGTTT+TGG | - | chr6_1:97283775-97283794 | None:intergenic | 35.0% |
| GTTTGTTTGCATGGTAGAAG+TGG | + | chr6_1:97281367-97281386 | Msa0901020:intron | 40.0% | |
| TGCAGACGTATGTCTATTAG+AGG | + | chr6_1:97281391-97281410 | Msa0901020:intron | 40.0% | |
| GTCTAGTCTATGTGAACACA+AGG | - | chr6_1:97281641-97281660 | None:intergenic | 40.0% | |
| CAAATAGCAACCTGTGTCTA+TGG | + | chr6_1:97281680-97281699 | Msa0901020:intron | 40.0% | |
| ! | TCACATTTTCCCATAGACAC+AGG | - | chr6_1:97281693-97281712 | None:intergenic | 40.0% |
| TTTCTTAGTAGCCAAAGCCA+CGG | + | chr6_1:97281834-97281853 | Msa0901020:intron | 40.0% | |
| AAAGAATGGAACGTTGCATG+TGG | + | chr6_1:97281915-97281934 | Msa0901020:intron | 40.0% | |
| CCTATGTGATTGGGATGAAA+TGG | - | chr6_1:97281944-97281963 | None:intergenic | 40.0% | |
| CCATTTCATCCCAATCACAT+AGG | + | chr6_1:97281941-97281960 | Msa0901020:intron | 40.0% | |
| AAAAGAAGGCAAGGCTAACA+GGG | - | chr6_1:97282017-97282036 | None:intergenic | 40.0% | |
| AAAAAGAAGGCAAGGCTAAC+AGG | - | chr6_1:97282018-97282037 | None:intergenic | 40.0% | |
| TAAAAGGGCAAACAAACGCA+GGG | - | chr6_1:97282187-97282206 | None:intergenic | 40.0% | |
| ATAAAAGGGCAAACAAACGC+AGG | - | chr6_1:97282188-97282207 | None:intergenic | 40.0% | |
| ! | TTGTTTGCCCTTTTATCGCA+TGG | + | chr6_1:97282192-97282211 | Msa0901020:intron | 40.0% |
| CAATGTTTCACTTCCTTTCC+TGG | + | chr6_1:97282272-97282291 | Msa0901020:intron | 40.0% | |
| !!! | TGGGAGTTTTTGAGTGATAC+GGG | - | chr6_1:97283255-97283274 | None:intergenic | 40.0% |
| TCAAAGGATAGTTGGCAAAC+TGG | - | chr6_1:97283282-97283301 | None:intergenic | 40.0% | |
| AGCATTTGCAAAACTTGCCT+TGG | - | chr6_1:97283317-97283336 | None:intergenic | 40.0% | |
| AATCCAACAGGATTTCGAAC+TGG | + | chr6_1:97283386-97283405 | Msa0901020:intron | 40.0% | |
| CCTTCTTAAAATTCTCCTGC+TGG | - | chr6_1:97283614-97283633 | None:intergenic | 40.0% | |
| !! | CCAGCAGGAGAATTTTAAGA+AGG | + | chr6_1:97283611-97283630 | Msa0901020:intron | 40.0% |
| TGAGCATCTTGCTGAAAAAG+TGG | + | chr6_1:97283677-97283696 | Msa0901020:CDS | 40.0% | |
| TTCAGGAAACCACAGCAAAC+TGG | + | chr6_1:97281428-97281447 | Msa0901020:intron | 45.0% | |
| !! | TTTACACTGCCAGTTTGCTG+TGG | - | chr6_1:97281440-97281459 | None:intergenic | 45.0% |
| TTCTTAGTAGCCAAAGCCAC+GGG | + | chr6_1:97281835-97281854 | Msa0901020:intron | 45.0% | |
| ACCAATACAAACATGACCCG+TGG | - | chr6_1:97281854-97281873 | None:intergenic | 45.0% | |
| AAGGCAAGGCCTATGTGATT+GGG | - | chr6_1:97281953-97281972 | None:intergenic | 45.0% | |
| AAAGAAGGCAAGGCTAACAG+GGG | - | chr6_1:97282016-97282035 | None:intergenic | 45.0% | |
| TCTATATTGGAGTCCAGCAC+CGG | + | chr6_1:97282157-97282176 | Msa0901020:intron | 45.0% | |
| AAAAGGGCAAACAAACGCAG+GGG | - | chr6_1:97282186-97282205 | None:intergenic | 45.0% | |
| ! | CAAAAATTGGTAGCTGGACC+AGG | - | chr6_1:97282293-97282312 | None:intergenic | 45.0% |
| TAGTTGGCAAACTGGTGCTT+GGG | - | chr6_1:97283274-97283293 | None:intergenic | 45.0% | |
| ATAGTTGGCAAACTGGTGCT+TGG | - | chr6_1:97283275-97283294 | None:intergenic | 45.0% | |
| TGCAAAACTTGCCTTGGCTT+TGG | - | chr6_1:97283311-97283330 | None:intergenic | 45.0% | |
| TTGCCAGTTCGAAATCCTGT+TGG | - | chr6_1:97283392-97283411 | None:intergenic | 45.0% | |
| TCCCTCTGAACTTGAAACTC+TGG | + | chr6_1:97283464-97283483 | Msa0901020:intron | 45.0% | |
| !! | GCCAGAGTTTCAAGTTCAGA+GGG | - | chr6_1:97283468-97283487 | None:intergenic | 45.0% |
| !! | TGCCAGAGTTTCAAGTTCAG+AGG | - | chr6_1:97283469-97283488 | None:intergenic | 45.0% |
| !! | TGATTTGGTTGCTGAACGTG+AGG | + | chr6_1:97283641-97283660 | Msa0901020:CDS | 45.0% |
| TGAACGTGAGGCTGCAATAT+TGG | + | chr6_1:97283653-97283672 | Msa0901020:CDS | 45.0% | |
| !!! | GTTGTTTTGGCTGTCTGCTT+TGG | - | chr6_1:97283762-97283781 | None:intergenic | 45.0% |
| TTTGCAGTCAGTGAGCCTAC+AGG | - | chr6_1:97281769-97281788 | None:intergenic | 50.0% | |
| ACAAACATGACCCGTGGCTT+TGG | - | chr6_1:97281848-97281867 | None:intergenic | 50.0% | |
| GCCACGGGTCATGTTTGTAT+TGG | + | chr6_1:97281850-97281869 | Msa0901020:intron | 50.0% | |
| GAAGGCAAGGCCTATGTGAT+TGG | - | chr6_1:97281954-97281973 | None:intergenic | 50.0% | |
| CTATATTGGAGTCCAGCACC+GGG | + | chr6_1:97282158-97282177 | Msa0901020:intron | 50.0% | |
| ! | ATTGGTAGCTGGACCAGGAA+AGG | - | chr6_1:97282288-97282307 | None:intergenic | 50.0% |
| TTGAGTGATACGGGCCTAAG+CGG | - | chr6_1:97283246-97283265 | None:intergenic | 50.0% | |
| ! | TCAAGTTCAGAGGGAGTGCA+GGG | - | chr6_1:97283459-97283478 | None:intergenic | 50.0% |
| ! | TTCAAGTTCAGAGGGAGTGC+AGG | - | chr6_1:97283460-97283479 | None:intergenic | 50.0% |
| TCAGCCAGTTCTCACCGCTT+AGG | + | chr6_1:97283229-97283248 | Msa0901020:intron | 55.0% | |
| CAAACAAACGCAGGGGAGCC+CGG | - | chr6_1:97282179-97282198 | None:intergenic | 60.0% | |
| AGCGGTGAGAACTGGCTGAG+CGG | - | chr6_1:97283228-97283247 | None:intergenic | 60.0% | |
| CGGGCCTAAGCGGTGAGAAC+TGG | - | chr6_1:97283236-97283255 | None:intergenic | 65.0% | |
| AACGCAGGGGAGCCCGGTGC+TGG | - | chr6_1:97282173-97282192 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 97279584 | 97283797 | 97279584 | ID=Msa0901020;Name=Msa0901020 |
| chr6_1 | mRNA | 97279584 | 97283797 | 97279584 | ID=Msa0901020-mRNA-1;Parent=Msa0901020;Name=Msa0901020-mRNA-1;_AED=0.52;_eAED=0.60;_QI=0|0|0|0.5|1|1|6|0|73 |
| chr6_1 | exon | 97279584 | 97279591 | 97279584 | ID=Msa0901020-mRNA-1:exon:17019;Parent=Msa0901020-mRNA-1 |
| chr6_1 | exon | 97279707 | 97279714 | 97279707 | ID=Msa0901020-mRNA-1:exon:17020;Parent=Msa0901020-mRNA-1 |
| chr6_1 | exon | 97280096 | 97280103 | 97280096 | ID=Msa0901020-mRNA-1:exon:17021;Parent=Msa0901020-mRNA-1 |
| chr6_1 | exon | 97282401 | 97282409 | 97282401 | ID=Msa0901020-mRNA-1:exon:17022;Parent=Msa0901020-mRNA-1 |
| chr6_1 | exon | 97282790 | 97282798 | 97282790 | ID=Msa0901020-mRNA-1:exon:17023;Parent=Msa0901020-mRNA-1 |
| chr6_1 | exon | 97283618 | 97283797 | 97283618 | ID=Msa0901020-mRNA-1:exon:17024;Parent=Msa0901020-mRNA-1 |
| chr6_1 | CDS | 97279584 | 97279591 | 97279584 | ID=Msa0901020-mRNA-1:cds;Parent=Msa0901020-mRNA-1 |
| chr6_1 | CDS | 97279707 | 97279714 | 97279707 | ID=Msa0901020-mRNA-1:cds;Parent=Msa0901020-mRNA-1 |
| chr6_1 | CDS | 97280096 | 97280103 | 97280096 | ID=Msa0901020-mRNA-1:cds;Parent=Msa0901020-mRNA-1 |
| chr6_1 | CDS | 97282401 | 97282409 | 97282401 | ID=Msa0901020-mRNA-1:cds;Parent=Msa0901020-mRNA-1 |
| chr6_1 | CDS | 97282790 | 97282798 | 97282790 | ID=Msa0901020-mRNA-1:cds;Parent=Msa0901020-mRNA-1 |
| chr6_1 | CDS | 97283618 | 97283797 | 97283618 | ID=Msa0901020-mRNA-1:cds;Parent=Msa0901020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
