Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0105260 | Msa0966770 | 0.818205 | 2.213698e-52 | -8.615850e-47 |
| Msa0748970 | Msa0966770 | 0.860438 | 2.064892e-63 | -8.615850e-47 |
| Msa0814870 | Msa0966770 | 0.826698 | 2.352200e-54 | -8.615850e-47 |
| Msa0434000 | Msa0966770 | 0.805330 | 1.406356e-49 | -8.615850e-47 |
| Msa0342750 | Msa0966770 | 0.847200 | 1.343781e-59 | -8.615850e-47 |
| Msa0900910 | Msa0966770 | 0.839279 | 1.743034e-57 | -8.615850e-47 |
| Msa0900980 | Msa0966770 | 0.817586 | 3.054272e-52 | -8.615850e-47 |
| Msa0901020 | Msa0966770 | 0.893416 | 6.416687e-75 | -8.615850e-47 |
| Msa0901070 | Msa0966770 | 0.848230 | 6.998722e-60 | -8.615850e-47 |
| Msa0901090 | Msa0966770 | 0.806517 | 7.917339e-50 | -8.615850e-47 |
| Msa0966770 | Msa0967280 | 0.828089 | 1.090917e-54 | -8.615850e-47 |
| Msa0966770 | Msa0980860 | -0.802670 | 5.024088e-49 | -8.615850e-47 |
| Msa0966770 | Msa1248300 | 0.800311 | 1.529434e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 19 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGGAACTTCAGTTGTTT+TGG | 0.218511 | 6_3:-95470368 | None:intergenic |
| TAAGAAGGATATTCTTGATT+TGG | 0.289956 | 6_3:+95470222 | Msa0966770:CDS |
| ATTATATTTCCCTCCTACTT+TGG | 0.298575 | 6_3:-95470385 | None:intergenic |
| TGCAAAACTTGCCTTGGCTT+TGG | 0.300766 | 6_3:-95469904 | None:intergenic |
| GTATTGATTTATCTATCATT+AGG | 0.339212 | 6_3:-95466685 | None:intergenic |
| GTGTTTGATAAAACCATATC+AGG | 0.362086 | 6_3:+95466860 | Msa0966770:CDS |
| TGAACGTGAGGCTGCAATAT+TGG | 0.373269 | 6_3:+95470249 | Msa0966770:CDS |
| TGAAAATGTATCTTGTATAG+TGG | 0.389792 | 6_3:+95466730 | Msa0966770:five_prime_UTR |
| TCAAAGGATAGTTGGCAAAC+TGG | 0.406156 | 6_3:-95469875 | None:intergenic |
| AGCATTTGCAAAACTTGCCT+TGG | 0.427464 | 6_3:-95469910 | None:intergenic |
| CGGGCCTAAGCGGTGAGAAC+TGG | 0.430951 | 6_3:-95469829 | None:intergenic |
| TAGTTGGCAAACTGGTGCTT+GGG | 0.489546 | 6_3:-95469867 | None:intergenic |
| TCAGCCAGTTCTCACCGCTT+AGG | 0.489934 | 6_3:+95469825 | Msa0966770:CDS |
| ATAGTTGGCAAACTGGTGCT+TGG | 0.496436 | 6_3:-95469868 | None:intergenic |
| AACAACTGAAGTTCCAAAGT+AGG | 0.570927 | 6_3:+95470372 | Msa0966770:CDS |
| TAAAACCATATCAGGTTCAG+AGG | 0.575619 | 6_3:+95466868 | Msa0966770:CDS |
| TGATTTGGTTGCTGAACGTG+AGG | 0.603299 | 6_3:+95470237 | Msa0966770:CDS |
| TTGAGTGATACGGGCCTAAG+CGG | 0.645669 | 6_3:-95469839 | None:intergenic |
| AGCGGTGAGAACTGGCTGAG+CGG | 0.707962 | 6_3:-95469821 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTAATTTTTAATTTTAAC+TGG | + | chr6_3:95467854-95467873 | Msa0966770:intron | 10.0% |
| !! | AGAAAATATATCTTATATAG+TGG | + | chr6_3:95467114-95467133 | Msa0966770:intron | 15.0% |
| !!! | GTATTGATTTATCTATTATT+AGG | + | chr6_3:95468975-95468994 | Msa0966770:intron | 15.0% |
| !! | AGAAAATATATCTTATATAG+TGG | + | chr6_3:95467114-95467133 | Msa0966770:intron | 15.0% |
| !!! | GTATTGATTTATCTATTATT+AGG | + | chr6_3:95468975-95468994 | Msa0966770:intron | 15.0% |
| !! | AAAAGTTATACGATAAAAAT+AGG | - | chr6_3:95469691-95469710 | None:intergenic | 15.0% |
| !! | AATAAATAGTTAGTGAAATA+TGG | - | chr6_3:95469722-95469741 | None:intergenic | 15.0% |
| !! | TAACAAAGTTTATTATTATG+TGG | + | chr6_3:95470103-95470122 | Msa0966770:intron | 15.0% |
| !!! | GTATTGATTTATCTATCATT+AGG | - | chr6_3:95467373-95467392 | None:intergenic | 20.0% |
| !! | AATCAAAAATAAAAACAGGA+AGG | - | chr6_3:95466904-95466923 | None:intergenic | 20.0% |
| !! | TAGGAATCAAAAATAAAAAC+AGG | - | chr6_3:95466908-95466927 | None:intergenic | 20.0% |
| !!! | GTATTGATTTATCTATTATC+AGG | + | chr6_3:95466984-95467003 | Msa0966770:intron | 20.0% |
| !!! | AAATCAATACATGTGTTTTT+AGG | + | chr6_3:95467082-95467101 | Msa0966770:intron | 20.0% |
| !! | AAAAGTTATATGACAACAAT+AGG | - | chr6_3:95467316-95467335 | None:intergenic | 20.0% |
| !! | ACAAAATAGTTAGTGAAATA+TGG | - | chr6_3:95467347-95467366 | None:intergenic | 20.0% |
| !!! | GTATTGATTTATCTATCATT+AGG | + | chr6_3:95467373-95467392 | Msa0966770:intron | 20.0% |
| !!! | GTATTGATTTATCTATCATT+AGG | - | chr6_3:95467373-95467392 | None:intergenic | 20.0% |
| !!! | AAATCAATACAATCGTTTTT+AGG | - | chr6_3:95467543-95467562 | None:intergenic | 20.0% |
| !!! | GTATTGATTTATCTATCATT+AGG | + | chr6_3:95467373-95467392 | Msa0966770:intron | 20.0% |
| !! | AGAAAATATATCTTGTATAG+TGG | + | chr6_3:95467683-95467702 | Msa0966770:intron | 20.0% |
| !! | TAAATTTATGTTTGTTTGCA+TGG | + | chr6_3:95467954-95467973 | Msa0966770:intron | 20.0% |
| !! | CTATTTAAATTAGGATGAAT+GGG | + | chr6_3:95468153-95468172 | Msa0966770:intron | 20.0% |
| !! | TTCATATGAACATATATGAT+AGG | + | chr6_3:95468203-95468222 | Msa0966770:intron | 20.0% |
| !!! | TTTTTTGTTACACCAATTTT+GGG | + | chr6_3:95468570-95468589 | Msa0966770:intron | 20.0% |
| !!! | TTTTTTGATACACCAATTTT+GGG | + | chr6_3:95468629-95468648 | Msa0966770:intron | 20.0% |
| !!! | AAATCAATACATGTGTTTTT+AGG | + | chr6_3:95467082-95467101 | Msa0966770:intron | 20.0% |
| !! | AAAACAAAAACATGATATGA+TGG | - | chr6_3:95469279-95469298 | None:intergenic | 20.0% |
| !!! | GTATTGATTTATCTATCATT+AGG | - | chr6_3:95467373-95467392 | None:intergenic | 20.0% |
| !! | AGAAAATATATCTTGTATAG+TGG | + | chr6_3:95467683-95467702 | Msa0966770:intron | 20.0% |
| !! | ATATTACTATTTAATCCAAC+AGG | + | chr6_3:95469970-95469989 | Msa0966770:intron | 20.0% |
| !! | TATTAAAGAACTCAAATATG+CGG | - | chr6_3:95470175-95470194 | None:intergenic | 20.0% |
| !! | AAATCAATACATGCGTTTTT+AGG | + | chr6_3:95466698-95466717 | Msa0966770:five_prime_UTR | 25.0% |
| ! | TGAAAATGTATCTTGTATAG+TGG | + | chr6_3:95466730-95466749 | Msa0966770:five_prime_UTR | 25.0% |
| ! | AAAAGTTATACGACAACAAT+AGG | - | chr6_3:95466927-95466946 | None:intergenic | 25.0% |
| ! | ATACGAAAGAACAAAATAGT+CGG | - | chr6_3:95466968-95466987 | None:intergenic | 25.0% |
| !!! | ACTTTTTTCACAAGTTTGAT+TGG | + | chr6_3:95467023-95467042 | Msa0966770:intron | 25.0% |
| ! | AAAACGAAAACATGATATGA+TGG | - | chr6_3:95467288-95467307 | None:intergenic | 25.0% |
| ! | ATCATTAGGTATCTATCATT+AGG | + | chr6_3:95467387-95467406 | Msa0966770:intron | 25.0% |
| !!! | AATTTTTTCACGAGTTTGAT+TGG | + | chr6_3:95467592-95467611 | Msa0966770:intron | 25.0% |
| !!! | GTATTGATTTCTCTATCATT+AGG | - | chr6_3:95467641-95467660 | None:intergenic | 25.0% |
| !! | AAATCAATACATGCGTTTTT+AGG | + | chr6_3:95466698-95466717 | Msa0966770:five_prime_UTR | 25.0% |
| ! | TTATATCAGCTGAATAATTG+CGG | + | chr6_3:95467925-95467944 | Msa0966770:intron | 25.0% |
| !! | GAAATTCGTAGTTTGTAAAT+CGG | + | chr6_3:95468102-95468121 | Msa0966770:intron | 25.0% |
| ! | GTTTGCTTCCTATTTAAATT+AGG | + | chr6_3:95468144-95468163 | Msa0966770:intron | 25.0% |
| ! | CCATTCATCCTAATTTAAAT+AGG | - | chr6_3:95468155-95468174 | None:intergenic | 25.0% |
| ! | CCTATTTAAATTAGGATGAA+TGG | + | chr6_3:95468152-95468171 | Msa0966770:intron | 25.0% |
| ! | AAGTAAAATTAAGACCTTGA+TGG | - | chr6_3:95468184-95468203 | None:intergenic | 25.0% |
| ! | TGGCTACTAAGAAAAATATA+AGG | - | chr6_3:95468424-95468443 | None:intergenic | 25.0% |
| !! | TTTGTATTGGTAAGATAGAA+TGG | + | chr6_3:95468459-95468478 | Msa0966770:intron | 25.0% |
| ! | TGGATCATTGTATAAAAGAA+TGG | + | chr6_3:95468497-95468516 | Msa0966770:intron | 25.0% |
| ! | AATTGGTGTAACAAAAAAGA+AGG | - | chr6_3:95468568-95468587 | None:intergenic | 25.0% |
| !!! | CTTTTTTGTTACACCAATTT+TGG | + | chr6_3:95468569-95468588 | Msa0966770:intron | 25.0% |
| ! | AATTGGTGTATCAAAAAAGA+AGG | - | chr6_3:95468627-95468646 | None:intergenic | 25.0% |
| !!! | CTTTTTTGATACACCAATTT+TGG | + | chr6_3:95468628-95468647 | Msa0966770:intron | 25.0% |
| ! | ATGAAGATAAAAAGCTAACA+GGG | - | chr6_3:95468672-95468691 | None:intergenic | 25.0% |
| ! | AATGAAGATAAAAAGCTAAC+AGG | - | chr6_3:95468673-95468692 | None:intergenic | 25.0% |
| !! | TAGAGATCATGTTTCTATAT+TGG | + | chr6_3:95468740-95468759 | Msa0966770:intron | 25.0% |
| ! | AAAGACAAATATTGAGACAT+GGG | - | chr6_3:95468846-95468865 | None:intergenic | 25.0% |
| ! | AAAAGACAAATATTGAGACA+TGG | - | chr6_3:95468847-95468866 | None:intergenic | 25.0% |
| ! | AAAAGTTATACGACAACAAT+AGG | - | chr6_3:95466927-95466946 | None:intergenic | 25.0% |
| ! | ATACGAAAGAACAAAATAGT+CGG | - | chr6_3:95466968-95466987 | None:intergenic | 25.0% |
| !! | AAATCAATACATGCGTTTTT+AGG | + | chr6_3:95466698-95466717 | Msa0966770:five_prime_UTR | 25.0% |
| ! | AATCAAAAACGAAAACATGA+TGG | - | chr6_3:95467293-95467312 | None:intergenic | 25.0% |
| ! | GAAACTAAAATTGTGAAACT+AGG | - | chr6_3:95469946-95469965 | None:intergenic | 25.0% |
| ! | GAAACTTGAATCAAAAACAT+TGG | - | chr6_3:95470135-95470154 | None:intergenic | 25.0% |
| ! | TAAGAAGGATATTCTTGATT+TGG | + | chr6_3:95470222-95470241 | Msa0966770:CDS | 25.0% |
| GTGTTTGATAAAACCATATC+AGG | + | chr6_3:95466860-95466879 | Msa0966770:CDS | 30.0% | |
| ACAAAATAGTCGGTGAAATA+TGG | - | chr6_3:95466958-95466977 | None:intergenic | 30.0% | |
| ! | TTTTTCACAAGTTTGATTGG+TGG | + | chr6_3:95467026-95467045 | Msa0966770:intron | 30.0% |
| !! | TATAGTGGATACGAATGATA+TGG | + | chr6_3:95467129-95467148 | Msa0966770:intron | 30.0% |
| ACGAATGATATGGTATTTGA+TGG | + | chr6_3:95467139-95467158 | Msa0966770:intron | 30.0% | |
| TTCAACATTAAGTCAAGCTA+CGG | - | chr6_3:95467192-95467211 | None:intergenic | 30.0% | |
| GTGTTTGATAAAACCATATC+AGG | + | chr6_3:95466860-95466879 | Msa0966770:CDS | 30.0% | |
| ACTTCTTTCATGAGTTTGAT+TGG | + | chr6_3:95467426-95467445 | Msa0966770:intron | 30.0% | |
| !! | TTGATTGGTTGATCGTTTTT+AGG | + | chr6_3:95467607-95467626 | Msa0966770:intron | 30.0% |
| !! | TATAGTGGATTCGTATGATA+TGG | + | chr6_3:95467698-95467717 | Msa0966770:intron | 30.0% |
| TTCAACAATAAGTCAAGCTA+CGG | - | chr6_3:95466808-95466827 | None:intergenic | 30.0% | |
| !! | TTAACTGGCTTTAAGAACTT+AGG | + | chr6_3:95467869-95467888 | Msa0966770:intron | 30.0% |
| TATATCAGCTGAATAATTGC+GGG | + | chr6_3:95467926-95467945 | Msa0966770:intron | 30.0% | |
| TTTCACTAACTACATGTGTT+TGG | - | chr6_3:95468086-95468105 | None:intergenic | 30.0% | |
| AAATCGGCTAAATTATTCGT+AGG | + | chr6_3:95468118-95468137 | Msa0966770:intron | 30.0% | |
| ! | AGACATGTGAAATGAGTTTT+TGG | + | chr6_3:95468253-95468272 | Msa0966770:intron | 30.0% |
| AAAGCCTTAGCAATATCTTA+AGG | - | chr6_3:95468323-95468342 | None:intergenic | 30.0% | |
| TTGGTAAGATAGAATGGAAT+AGG | + | chr6_3:95468465-95468484 | Msa0966770:intron | 30.0% | |
| TGGTAAGATAGAATGGAATA+GGG | + | chr6_3:95468466-95468485 | Msa0966770:intron | 30.0% | |
| TGAAGATAAAAAGCTAACAG+GGG | - | chr6_3:95468671-95468690 | None:intergenic | 30.0% | |
| TAGAAACATGATCTCTACAA+GGG | - | chr6_3:95468737-95468756 | None:intergenic | 30.0% | |
| ATAGAAACATGATCTCTACA+AGG | - | chr6_3:95468738-95468757 | None:intergenic | 30.0% | |
| ! | TGGATCTTTCAATTTGTTTC+TGG | + | chr6_3:95468808-95468827 | Msa0966770:intron | 30.0% |
| ! | AATTTGCAAAAATTGGTAGC+TGG | - | chr6_3:95468895-95468914 | None:intergenic | 30.0% |
| AATCGGGAATTTGCAAAAAT+TGG | - | chr6_3:95468902-95468921 | None:intergenic | 30.0% | |
| !!! | ACTTTTTTCACGAGTTTGAT+TGG | + | chr6_3:95469014-95469033 | Msa0966770:intron | 30.0% |
| !! | TATAGTGGATACGAATGATA+TGG | + | chr6_3:95467129-95467148 | Msa0966770:intron | 30.0% |
| TTCAACAATAAGTCAAGCTA+CGG | - | chr6_3:95466808-95466827 | None:intergenic | 30.0% | |
| GTGTTTGATAAAACCATATC+AGG | + | chr6_3:95466860-95466879 | Msa0966770:CDS | 30.0% | |
| ACAAAATAGTCGGTGAAATA+TGG | - | chr6_3:95466958-95466977 | None:intergenic | 30.0% | |
| !!! | ACTTTTTTCACGAGTTTGAT+TGG | + | chr6_3:95469014-95469033 | Msa0966770:intron | 30.0% |
| !! | TATAGTGGATTCGTATGATA+TGG | + | chr6_3:95467698-95467717 | Msa0966770:intron | 30.0% |
| TTCAACAATAAGTCAAGCTA+CGG | - | chr6_3:95466808-95466827 | None:intergenic | 30.0% | |
| GTGTTTGATAAAACCATATC+AGG | + | chr6_3:95466860-95466879 | Msa0966770:CDS | 30.0% | |
| TTGTGAGATGTCAAAAGATT+GGG | - | chr6_3:95469782-95469801 | None:intergenic | 30.0% | |
| TGAATCAAAAACATTGGTGA+AGG | - | chr6_3:95470129-95470148 | None:intergenic | 30.0% | |
| ATATTAATCTATGAACCAGC+AGG | + | chr6_3:95470192-95470211 | Msa0966770:intron | 30.0% | |
| TAAAACCATATCAGGTTCAG+AGG | + | chr6_3:95466868-95466887 | Msa0966770:CDS | 35.0% | |
| AAAAACCTCTGAACCTGATA+TGG | - | chr6_3:95466876-95466895 | None:intergenic | 35.0% | |
| !! | TTGATTGGTGGATCGTTTTT+AGG | + | chr6_3:95467038-95467057 | Msa0966770:intron | 35.0% |
| TAAAACCATATCAGGTTCAG+AGG | + | chr6_3:95466868-95466887 | Msa0966770:CDS | 35.0% | |
| AAAAACCTCTGAACCTGATA+TGG | - | chr6_3:95466876-95466895 | None:intergenic | 35.0% | |
| TCTTTCATGAGTTTGATTGG+TGG | + | chr6_3:95467429-95467448 | Msa0966770:intron | 35.0% | |
| !! | TTGATTGGTGGATCGTTTTT+AGG | + | chr6_3:95467038-95467057 | Msa0966770:intron | 35.0% |
| CAAGCAACAAAACCAATGAT+TGG | + | chr6_3:95467494-95467513 | Msa0966770:intron | 35.0% | |
| AAAAACGATCCACCAATCAT+TGG | - | chr6_3:95467509-95467528 | None:intergenic | 35.0% | |
| !! | ATGATTGGTGGATCGTTTTT+AGG | + | chr6_3:95467509-95467528 | Msa0966770:intron | 35.0% |
| ATATCAGCTGAATAATTGCG+GGG | + | chr6_3:95467927-95467946 | Msa0966770:intron | 35.0% | |
| !!! | AGGCTGAATTTTTTAGCTTC+AGG | + | chr6_3:95468007-95468026 | Msa0966770:intron | 35.0% |
| !!! | TGGATTAGCTTTTGCTTTGA+TGG | - | chr6_3:95468066-95468085 | None:intergenic | 35.0% |
| ! | ATGAATGGGTTTATCCATCA+AGG | + | chr6_3:95468167-95468186 | Msa0966770:intron | 35.0% |
| AAATAGCAACCTGTGTCTAT+GGG | + | chr6_3:95468277-95468296 | Msa0966770:intron | 35.0% | |
| !! | CTAGCCTTAAGATATTGCTA+AGG | + | chr6_3:95468316-95468335 | Msa0966770:intron | 35.0% |
| !!! | AGTTCTGTTTTGTTTCCTGT+AGG | + | chr6_3:95468347-95468366 | Msa0966770:intron | 35.0% |
| GATAGAATGGAATAGGGAAA+TGG | + | chr6_3:95468472-95468491 | Msa0966770:intron | 35.0% | |
| AATGGAATAGGGAAATGGAT+TGG | + | chr6_3:95468477-95468496 | Msa0966770:intron | 35.0% | |
| GTGTAACAAAAAAGAAGGCA+AGG | - | chr6_3:95468563-95468582 | None:intergenic | 35.0% | |
| GATTTCATTGCTCCCAAAAT+TGG | - | chr6_3:95468585-95468604 | None:intergenic | 35.0% | |
| GTGTATCAAAAAAGAAGGCA+AGG | - | chr6_3:95468622-95468641 | None:intergenic | 35.0% | |
| GATTTCTTTGCTCCCAAAAT+TGG | - | chr6_3:95468644-95468663 | None:intergenic | 35.0% | |
| GAAAGATCCATGCGATAAAA+GGG | - | chr6_3:95468798-95468817 | None:intergenic | 35.0% | |
| TGAAAGATCCATGCGATAAA+AGG | - | chr6_3:95468799-95468818 | None:intergenic | 35.0% | |
| ! | AAAGTATCAGCAAGACAATC+GGG | - | chr6_3:95468918-95468937 | None:intergenic | 35.0% |
| !! | GAAAGTATCAGCAAGACAAT+CGG | - | chr6_3:95468919-95468938 | None:intergenic | 35.0% |
| ! | TTTTTCACGAGTTTGATTGG+TGG | + | chr6_3:95467595-95467614 | Msa0966770:intron | 35.0% |
| !! | TTGATTGGTGGATCGTTTTT+AGG | + | chr6_3:95467038-95467057 | Msa0966770:intron | 35.0% |
| TAAAACCATATCAGGTTCAG+AGG | + | chr6_3:95466868-95466887 | Msa0966770:CDS | 35.0% | |
| AAAAACCTCTGAACCTGATA+TGG | - | chr6_3:95466876-95466895 | None:intergenic | 35.0% | |
| ! | TTTTTCACGAGTTTGATTGG+TGG | + | chr6_3:95467595-95467614 | Msa0966770:intron | 35.0% |
| !! | TTGATTGGTGGATCGTTTTT+AGG | + | chr6_3:95467038-95467057 | Msa0966770:intron | 35.0% |
| TAAAACCATATCAGGTTCAG+AGG | + | chr6_3:95466868-95466887 | Msa0966770:CDS | 35.0% | |
| AAAAACCTCTGAACCTGATA+TGG | - | chr6_3:95466876-95466895 | None:intergenic | 35.0% | |
| TGTGAGATGTCAAAAGATTG+GGG | - | chr6_3:95469781-95469800 | None:intergenic | 35.0% | |
| CTTGTGAGATGTCAAAAGAT+TGG | - | chr6_3:95469783-95469802 | None:intergenic | 35.0% | |
| !!! | TTGGGAGTTTTTGAGTGATA+CGG | - | chr6_3:95469852-95469871 | None:intergenic | 35.0% |
| ! | GGTTTTTCTCAAAGGATAGT+TGG | - | chr6_3:95469886-95469905 | None:intergenic | 35.0% |
| !!! | TTGGCTTTGGTTTTTCTCAA+AGG | - | chr6_3:95469894-95469913 | None:intergenic | 35.0% |
| TTTGAGAAAAACCAAAGCCA+AGG | + | chr6_3:95469893-95469912 | Msa0966770:CDS | 35.0% | |
| TGATCAAGTGAATGCTGAAT+TGG | + | chr6_3:95470024-95470043 | Msa0966770:intron | 35.0% | |
| !!! | AAACTCTGGCAAGTTTTTTC+AGG | + | chr6_3:95470074-95470093 | Msa0966770:intron | 35.0% |
| !!! | CTTTGGAACTTCAGTTGTTT+TGG | - | chr6_3:95470371-95470390 | None:intergenic | 35.0% |
| GCAACAAAACCAATGATTGG+TGG | + | chr6_3:95467497-95467516 | Msa0966770:intron | 40.0% | |
| GTTTGTTTGCATGGTAGAAG+TGG | + | chr6_3:95467963-95467982 | Msa0966770:intron | 40.0% | |
| TGCAGACGTATGTCTATTAG+AGG | + | chr6_3:95467987-95468006 | Msa0966770:intron | 40.0% | |
| GTCTAGTCTATGTGAACACA+AGG | - | chr6_3:95468237-95468256 | None:intergenic | 40.0% | |
| CAAATAGCAACCTGTGTCTA+TGG | + | chr6_3:95468276-95468295 | Msa0966770:intron | 40.0% | |
| ! | TCACATTTTCCCATAGACAC+AGG | - | chr6_3:95468289-95468308 | None:intergenic | 40.0% |
| TTTCTTAGTAGCCAAAGCCA+CGG | + | chr6_3:95468430-95468449 | Msa0966770:intron | 40.0% | |
| AAAGAATGGAACGTTGCATG+TGG | + | chr6_3:95468511-95468530 | Msa0966770:intron | 40.0% | |
| CCTATGTGATTGGGATGAAA+TGG | - | chr6_3:95468540-95468559 | None:intergenic | 40.0% | |
| CCATTTCATCCCAATCACAT+AGG | + | chr6_3:95468537-95468556 | Msa0966770:intron | 40.0% | |
| AAAAGAAGGCAAGGCTAACA+GGG | - | chr6_3:95468613-95468632 | None:intergenic | 40.0% | |
| AAAAAGAAGGCAAGGCTAAC+AGG | - | chr6_3:95468614-95468633 | None:intergenic | 40.0% | |
| TAAAAGGGCAAACAAACGCA+GGG | - | chr6_3:95468783-95468802 | None:intergenic | 40.0% | |
| ATAAAAGGGCAAACAAACGC+AGG | - | chr6_3:95468784-95468803 | None:intergenic | 40.0% | |
| ! | TTGTTTGCCCTTTTATCGCA+TGG | + | chr6_3:95468788-95468807 | Msa0966770:intron | 40.0% |
| CAATGTTTCACTTCCTTTCC+TGG | + | chr6_3:95468868-95468887 | Msa0966770:intron | 40.0% | |
| !!! | TGGGAGTTTTTGAGTGATAC+GGG | - | chr6_3:95469851-95469870 | None:intergenic | 40.0% |
| TCAAAGGATAGTTGGCAAAC+TGG | - | chr6_3:95469878-95469897 | None:intergenic | 40.0% | |
| AGCATTTGCAAAACTTGCCT+TGG | - | chr6_3:95469913-95469932 | None:intergenic | 40.0% | |
| AATCCAACAGGATTTCGAAC+TGG | + | chr6_3:95469982-95470001 | Msa0966770:intron | 40.0% | |
| CCTTCTTAAAATTCTCCTGC+TGG | - | chr6_3:95470210-95470229 | None:intergenic | 40.0% | |
| !! | CCAGCAGGAGAATTTTAAGA+AGG | + | chr6_3:95470207-95470226 | Msa0966770:intron | 40.0% |
| TGAGCATCTTGCTGAAAAAG+TGG | + | chr6_3:95470273-95470292 | Msa0966770:CDS | 40.0% | |
| TTCAGGAAACCACAGCAAAC+TGG | + | chr6_3:95468024-95468043 | Msa0966770:intron | 45.0% | |
| !! | TTTACACTGCCAGTTTGCTG+TGG | - | chr6_3:95468036-95468055 | None:intergenic | 45.0% |
| TTCTTAGTAGCCAAAGCCAC+GGG | + | chr6_3:95468431-95468450 | Msa0966770:intron | 45.0% | |
| ACCAATACAAACATGACCCG+TGG | - | chr6_3:95468450-95468469 | None:intergenic | 45.0% | |
| AAGGCAAGGCCTATGTGATT+GGG | - | chr6_3:95468549-95468568 | None:intergenic | 45.0% | |
| AAAGAAGGCAAGGCTAACAG+GGG | - | chr6_3:95468612-95468631 | None:intergenic | 45.0% | |
| TCTATATTGGAGTCCAGCAC+CGG | + | chr6_3:95468753-95468772 | Msa0966770:intron | 45.0% | |
| AAAAGGGCAAACAAACGCAG+GGG | - | chr6_3:95468782-95468801 | None:intergenic | 45.0% | |
| ! | CAAAAATTGGTAGCTGGACC+AGG | - | chr6_3:95468889-95468908 | None:intergenic | 45.0% |
| TAGTTGGCAAACTGGTGCTT+GGG | - | chr6_3:95469870-95469889 | None:intergenic | 45.0% | |
| ATAGTTGGCAAACTGGTGCT+TGG | - | chr6_3:95469871-95469890 | None:intergenic | 45.0% | |
| TGCAAAACTTGCCTTGGCTT+TGG | - | chr6_3:95469907-95469926 | None:intergenic | 45.0% | |
| TTGCCAGTTCGAAATCCTGT+TGG | - | chr6_3:95469988-95470007 | None:intergenic | 45.0% | |
| TCCCTCTGAACTTGAAACTC+TGG | + | chr6_3:95470060-95470079 | Msa0966770:intron | 45.0% | |
| !! | GCCAGAGTTTCAAGTTCAGA+GGG | - | chr6_3:95470064-95470083 | None:intergenic | 45.0% |
| !! | TGCCAGAGTTTCAAGTTCAG+AGG | - | chr6_3:95470065-95470084 | None:intergenic | 45.0% |
| !! | TGATTTGGTTGCTGAACGTG+AGG | + | chr6_3:95470237-95470256 | Msa0966770:CDS | 45.0% |
| TGAACGTGAGGCTGCAATAT+TGG | + | chr6_3:95470249-95470268 | Msa0966770:CDS | 45.0% | |
| !!! | GTTGTTTTGGCTGTCTGCTT+TGG | - | chr6_3:95470358-95470377 | None:intergenic | 45.0% |
| TTTGCAGTCAGTGAGCCTAC+AGG | - | chr6_3:95468365-95468384 | None:intergenic | 50.0% | |
| ACAAACATGACCCGTGGCTT+TGG | - | chr6_3:95468444-95468463 | None:intergenic | 50.0% | |
| GCCACGGGTCATGTTTGTAT+TGG | + | chr6_3:95468446-95468465 | Msa0966770:intron | 50.0% | |
| GAAGGCAAGGCCTATGTGAT+TGG | - | chr6_3:95468550-95468569 | None:intergenic | 50.0% | |
| CTATATTGGAGTCCAGCACC+GGG | + | chr6_3:95468754-95468773 | Msa0966770:intron | 50.0% | |
| ! | ATTGGTAGCTGGACCAGGAA+AGG | - | chr6_3:95468884-95468903 | None:intergenic | 50.0% |
| TTGAGTGATACGGGCCTAAG+CGG | - | chr6_3:95469842-95469861 | None:intergenic | 50.0% | |
| ! | TCAAGTTCAGAGGGAGTGCA+GGG | - | chr6_3:95470055-95470074 | None:intergenic | 50.0% |
| ! | TTCAAGTTCAGAGGGAGTGC+AGG | - | chr6_3:95470056-95470075 | None:intergenic | 50.0% |
| TCAGCCAGTTCTCACCGCTT+AGG | + | chr6_3:95469825-95469844 | Msa0966770:CDS | 55.0% | |
| CAAACAAACGCAGGGGAGCC+CGG | - | chr6_3:95468775-95468794 | None:intergenic | 60.0% | |
| AGCGGTGAGAACTGGCTGAG+CGG | - | chr6_3:95469824-95469843 | None:intergenic | 60.0% | |
| CGGGCCTAAGCGGTGAGAAC+TGG | - | chr6_3:95469832-95469851 | None:intergenic | 65.0% | |
| AACGCAGGGGAGCCCGGTGC+TGG | - | chr6_3:95468769-95468788 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 95466685 | 95470393 | 95466685 | ID=Msa0966770;Name=Msa0966770 |
| chr6_3 | mRNA | 95466685 | 95470393 | 95466685 | ID=Msa0966770-mRNA-1;Parent=Msa0966770;Name=Msa0966770-mRNA-1;_AED=0.39;_eAED=0.57;_QI=145|0|0.33|1|0|0.66|3|0|128 |
| chr6_3 | exon | 95466685 | 95466889 | 95466685 | ID=Msa0966770-mRNA-1:exon:17679;Parent=Msa0966770-mRNA-1 |
| chr6_3 | exon | 95469803 | 95469946 | 95469803 | ID=Msa0966770-mRNA-1:exon:17680;Parent=Msa0966770-mRNA-1 |
| chr6_3 | exon | 95470211 | 95470393 | 95470211 | ID=Msa0966770-mRNA-1:exon:17681;Parent=Msa0966770-mRNA-1 |
| chr6_3 | five_prime_UTR | 95466685 | 95466829 | 95466685 | ID=Msa0966770-mRNA-1:five_prime_utr;Parent=Msa0966770-mRNA-1 |
| chr6_3 | CDS | 95466830 | 95466889 | 95466830 | ID=Msa0966770-mRNA-1:cds;Parent=Msa0966770-mRNA-1 |
| chr6_3 | CDS | 95469803 | 95469946 | 95469803 | ID=Msa0966770-mRNA-1:cds;Parent=Msa0966770-mRNA-1 |
| chr6_3 | CDS | 95470211 | 95470393 | 95470211 | ID=Msa0966770-mRNA-1:cds;Parent=Msa0966770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
