Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1241130 | XP_024627580.1 | 96.907 | 194 | 0 | 1 | 1 | 194 | 1 | 188 | 1.38e-135 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1241130 | sp|Q9VKV8|CFA20_DROME | 78.866 | 194 | 35 | 1 | 1 | 194 | 1 | 188 | 1.30e-118 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1241130 | B7FL68 | 96.907 | 194 | 0 | 1 | 1 | 194 | 1 | 188 | 6.60e-136 | 389 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009420 | Msa1241130 | -0.818954 | 1.497069e-52 | -8.615850e-47 |
| Msa0044540 | Msa1241130 | 0.803915 | 2.775267e-49 | -8.615850e-47 |
| Msa0057680 | Msa1241130 | 0.812877 | 3.397618e-51 | -8.615850e-47 |
| Msa0068740 | Msa1241130 | 0.801692 | 7.985726e-49 | -8.615850e-47 |
| Msa0090320 | Msa1241130 | -0.813673 | 2.272347e-51 | -8.615850e-47 |
| Msa0105260 | Msa1241130 | -0.814141 | 1.791739e-51 | -8.615850e-47 |
| Msa0607540 | Msa1241130 | -0.810427 | 1.159228e-50 | -8.615850e-47 |
| Msa0731940 | Msa1241130 | -0.806469 | 8.104413e-50 | -8.615850e-47 |
| Msa0748970 | Msa1241130 | -0.806526 | 7.882871e-50 | -8.615850e-47 |
| Msa0800210 | Msa1241130 | -0.800846 | 1.190142e-48 | -8.615850e-47 |
| Msa0801780 | Msa1241130 | -0.806008 | 1.013223e-49 | -8.615850e-47 |
| Msa0810360 | Msa1241130 | 0.808825 | 2.560887e-50 | -8.615850e-47 |
| Msa0827350 | Msa1241130 | 0.807406 | 5.133305e-50 | -8.615850e-47 |
| Msa0137640 | Msa1241130 | -0.819701 | 1.011604e-52 | -8.615850e-47 |
| Msa0182740 | Msa1241130 | -0.816043 | 6.776277e-52 | -8.615850e-47 |
| Msa0191840 | Msa1241130 | -0.821348 | 4.236341e-53 | -8.615850e-47 |
| Msa0201070 | Msa1241130 | -0.825986 | 3.475312e-54 | -8.615850e-47 |
| Msa0237750 | Msa1241130 | -0.818935 | 1.511962e-52 | -8.615850e-47 |
| Msa1224580 | Msa1241130 | 0.807181 | 5.730280e-50 | -8.615850e-47 |
| Msa1241130 | Msa1261250 | -0.825092 | 5.658286e-54 | -8.615850e-47 |
| Msa1241130 | Msa1277660 | -0.812442 | 4.230337e-51 | -8.615850e-47 |
| Msa1241130 | Msa1279690 | 0.803518 | 3.354711e-49 | -8.615850e-47 |
| Msa1241130 | Msa1282580 | 0.838534 | 2.716515e-57 | -8.615850e-47 |
| Msa1241130 | Msa1420290 | -0.813981 | 1.943910e-51 | -8.615850e-47 |
| Msa1241130 | Msa1429150 | -0.807298 | 5.412029e-50 | -8.615850e-47 |
| Msa1241130 | Msa1451620 | 0.813055 | 3.106354e-51 | -8.615850e-47 |
| Msa1241130 | Msa1466540 | -0.800703 | 1.272372e-48 | -8.615850e-47 |
| Msa0411390 | Msa1241130 | -0.807490 | 4.928451e-50 | -8.615850e-47 |
| Msa0433410 | Msa1241130 | 0.800978 | 1.118235e-48 | -8.615850e-47 |
| Msa0434000 | Msa1241130 | -0.806058 | 9.889688e-50 | -8.615850e-47 |
| Msa0434180 | Msa1241130 | -0.812977 | 3.231866e-51 | -8.615850e-47 |
| Msa0477130 | Msa1241130 | 0.801403 | 9.155857e-49 | -8.615850e-47 |
| Msa0980860 | Msa1241130 | 0.819219 | 1.302980e-52 | -8.615850e-47 |
| Msa0987560 | Msa1241130 | 0.804340 | 2.264614e-49 | -8.615850e-47 |
| Msa0990960 | Msa1241130 | -0.809566 | 1.776139e-50 | -8.615850e-47 |
| Msa0998680 | Msa1241130 | -0.832375 | 9.798538e-56 | -8.615850e-47 |
| Msa1069990 | Msa1241130 | -0.822240 | 2.632844e-53 | -8.615850e-47 |
| Msa1075220 | Msa1241130 | 0.813414 | 2.590887e-51 | -8.615850e-47 |
| Msa1107100 | Msa1241130 | -0.810883 | 9.237376e-51 | -8.615850e-47 |
| Msa0263580 | Msa1241130 | 0.800974 | 1.120225e-48 | -8.615850e-47 |
| Msa0305190 | Msa1241130 | -0.800714 | 1.266064e-48 | -8.615850e-47 |
| Msa0342750 | Msa1241130 | -0.814439 | 1.540165e-51 | -8.615850e-47 |
| Msa0362450 | Msa1241130 | -0.832722 | 8.038755e-56 | -8.615850e-47 |
| Msa1186950 | Msa1241130 | 0.811901 | 5.551087e-51 | -8.615850e-47 |
| Msa0493000 | Msa1241130 | -0.842003 | 3.370804e-58 | -8.615850e-47 |
| Msa0530940 | Msa1241130 | -0.820622 | 6.223425e-53 | -8.615850e-47 |
| Msa0559800 | Msa1241130 | 0.808860 | 2.516798e-50 | -8.615850e-47 |
| Msa0576200 | Msa1241130 | -0.803580 | 3.257297e-49 | -8.615850e-47 |
| Msa0598790 | Msa1241130 | -0.831081 | 2.042935e-55 | -8.615850e-47 |
| Msa0598880 | Msa1241130 | 0.833944 | 3.985258e-56 | -8.615850e-47 |
| Msa0842710 | Msa1241130 | -0.805663 | 1.197319e-49 | -8.615850e-47 |
| Msa0886330 | Msa1241130 | 0.862312 | 5.538882e-64 | -8.615850e-47 |
| Msa0891040 | Msa1241130 | -0.803004 | 4.286296e-49 | -8.615850e-47 |
| Msa0900980 | Msa1241130 | -0.805891 | 1.072362e-49 | -8.615850e-47 |
| Msa0901020 | Msa1241130 | -0.825219 | 5.281300e-54 | -8.615850e-47 |
| Msa0901070 | Msa1241130 | -0.800671 | 1.291656e-48 | -8.615850e-47 |
| Msa0913480 | Msa1241130 | 0.820878 | 5.436098e-53 | -8.615850e-47 |
| Msa0925290 | Msa1241130 | -0.824759 | 6.781420e-54 | -8.615850e-47 |
| Msa0925870 | Msa1241130 | -0.813565 | 2.400034e-51 | -8.615850e-47 |
| Msa0927290 | Msa1241130 | -0.800477 | 1.415048e-48 | -8.615850e-47 |
| Msa0947660 | Msa1241130 | -0.802472 | 5.521507e-49 | -8.615850e-47 |
| Msa0959360 | Msa1241130 | -0.806279 | 8.884513e-50 | -8.615850e-47 |
| Msa0967280 | Msa1241130 | -0.855436 | 6.317066e-62 | -8.615850e-47 |
| Msa0976670 | Msa1241130 | -0.832592 | 8.656755e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1241130 | MtrunA17_Chr8g0353791 | 96.907 | 194 | 0 | 1 | 1 | 194 | 1 | 188 | 1.27e-139 | 389 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1241130 | AT3G12300.1 | 85.052 | 194 | 23 | 1 | 1 | 194 | 1 | 188 | 2.32e-126 | 355 |
Find 61 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTTGAGATTCAAGTTT+TGG | 0.209840 | 8_2:+24493915 | Msa1241130:CDS |
| ATTAGTCCCATATGCTTTCT+TGG | 0.233780 | 8_2:-24494339 | None:intergenic |
| TCTAATGTACTGGAAATAAT+TGG | 0.268445 | 8_2:+24493784 | Msa1241130:CDS |
| ATACCCAAGGCTGTATAATA+TGG | 0.289391 | 8_2:-24493291 | None:intergenic |
| TGGTATAAAACTTCCATTCT+TGG | 0.289803 | 8_2:+24493861 | Msa1241130:CDS |
| CATCTTGTGGTCGCTTAATA+TGG | 0.311001 | 8_2:-24493750 | None:intergenic |
| GGAGCAAACCTTTGCAGATA+TGG | 0.317310 | 8_2:+24493415 | Msa1241130:intron |
| TAAAGTCAGCCAGGTTAAAC+TGG | 0.353864 | 8_2:-24494316 | None:intergenic |
| TTTCCATATTATACAGCCTT+GGG | 0.401172 | 8_2:+24493288 | Msa1241130:CDS |
| AAAGAATCAGCACTTAGTTT+AGG | 0.410331 | 8_2:-24491883 | None:intergenic |
| TGTGGAGACACTACGAGTTC+AGG | 0.427848 | 8_2:+24494364 | Msa1241130:CDS |
| GACTTTACCAAGAAAGCATA+TGG | 0.429193 | 8_2:+24494332 | Msa1241130:CDS |
| TTCACAATCATAACCAAGAA+TGG | 0.450408 | 8_2:-24493874 | None:intergenic |
| AGTGTGGCAGCTGGGTCAGC+CGG | 0.451970 | 8_2:-24493838 | None:intergenic |
| AACTTACGATGATGAGCGTT+GGG | 0.454005 | 8_2:-24491947 | None:intergenic |
| CTTTCCATATTATACAGCCT+TGG | 0.463889 | 8_2:+24493287 | Msa1241130:CDS |
| AGAAATAATGAAAATGTCAT+TGG | 0.467147 | 8_2:+24494576 | Msa1241130:CDS |
| TTTATACCAAGTGTGGCAGC+TGG | 0.471135 | 8_2:-24493847 | None:intergenic |
| CAAGTTGTACCTTCCAATGC+AGG | 0.471690 | 8_2:+24494463 | Msa1241130:CDS |
| TTCAAGAACACATTCCAGTC+TGG | 0.472331 | 8_2:+24493260 | Msa1241130:CDS |
| TTGCACTATGCCACTGAGAA+TGG | 0.489210 | 8_2:+24494274 | Msa1241130:CDS |
| AGACATACAATCTAATGTAC+TGG | 0.495892 | 8_2:+24493774 | Msa1241130:CDS |
| GATTGTATGTCTTCATCTTG+TGG | 0.496368 | 8_2:-24493763 | None:intergenic |
| CTTTCTTGGTAAAGTCAGCC+AGG | 0.501342 | 8_2:-24494325 | None:intergenic |
| TGGAGGATGGAATTGATGCC+AGG | 0.511205 | 8_2:+24494596 | Msa1241130:CDS |
| GCTGACCCAGCTGCCACACT+TGG | 0.511732 | 8_2:+24493841 | Msa1241130:CDS |
| ATGAAAATGTCATTGGAGGA+TGG | 0.513519 | 8_2:+24494583 | Msa1241130:CDS |
| GAGCAAACCTTTGCAGATAT+GGG | 0.519182 | 8_2:+24493416 | Msa1241130:CDS |
| TTCTCAAGCGACAGTTTGCA+TGG | 0.520738 | 8_2:-24494388 | None:intergenic |
| GTGTGGCAGCTGGGTCAGCC+GGG | 0.525412 | 8_2:-24493837 | None:intergenic |
| CAGACATCTCATACCTGCAT+TGG | 0.527544 | 8_2:-24494476 | None:intergenic |
| CATGGGCAGACTTACACACT+TGG | 0.535696 | 8_2:-24493978 | None:intergenic |
| GGAAGGTACAACTTGAACTC+TGG | 0.537228 | 8_2:-24494455 | None:intergenic |
| AAACTTACGATGATGAGCGT+TGG | 0.540100 | 8_2:-24491948 | None:intergenic |
| AATAATGAAAATGTCATTGG+AGG | 0.544133 | 8_2:+24494579 | Msa1241130:CDS |
| CTTCTCTGATCGTCTCTACT+CGG | 0.546100 | 8_2:+24494418 | Msa1241130:CDS |
| GTCCACATACATTACGTGCC+CGG | 0.551642 | 8_2:+24493819 | Msa1241130:CDS |
| TATGCCACTGAGAATGGATG+AGG | 0.552706 | 8_2:+24494280 | Msa1241130:CDS |
| CATAACATTCAACCATCTCC+TGG | 0.552872 | 8_2:-24494614 | None:intergenic |
| TCTTTGTCCCATATCTGCAA+AGG | 0.557834 | 8_2:-24493423 | None:intergenic |
| TGATCGTCTCTACTCGGAAG+AGG | 0.559398 | 8_2:+24494424 | Msa1241130:CDS |
| AGCATATGGGACTAATTATG+TGG | 0.561284 | 8_2:+24494346 | Msa1241130:CDS |
| CATCTCATACCTGCATTGGA+AGG | 0.576069 | 8_2:-24494472 | None:intergenic |
| ATGCAAACTGTCGCTTGAGA+AGG | 0.579025 | 8_2:+24494390 | Msa1241130:CDS |
| AGGTACAACTTGAACTCTGG+TGG | 0.579778 | 8_2:-24494452 | None:intergenic |
| GAATCAAATCCAGTTTAACC+TGG | 0.582198 | 8_2:+24494307 | Msa1241130:CDS |
| AGTGGCATAGTGCAAATGTA+CGG | 0.583812 | 8_2:-24494266 | None:intergenic |
| CACTGAGAATGGATGAGGGT+TGG | 0.589041 | 8_2:+24494285 | Msa1241130:CDS |
| TTGCAGATATGGGACAAAGA+AGG | 0.596515 | 8_2:+24493426 | Msa1241130:CDS |
| ATATGGAAAGAAATCCAGAC+TGG | 0.597297 | 8_2:-24493274 | None:intergenic |
| TCTGCATGATGAACAATACA+AGG | 0.597722 | 8_2:-24494556 | None:intergenic |
| ACTTTACCAAGAAAGCATAT+GGG | 0.601556 | 8_2:+24494333 | Msa1241130:CDS |
| TGTTATGTGTAGTTGTGTGT+CGG | 0.606396 | 8_2:+24494630 | Msa1241130:CDS |
| ATGGAATTGATGCCAGGAGA+TGG | 0.612954 | 8_2:+24494602 | Msa1241130:CDS |
| TTATACCAAGTGTGGCAGCT+GGG | 0.613588 | 8_2:-24493846 | None:intergenic |
| CGCGAGAGAGACGAGAGGAG+AGG | 0.619189 | 8_2:-24491909 | None:intergenic |
| GGTACAACTTGAACTCTGGT+GGG | 0.629720 | 8_2:-24494451 | None:intergenic |
| AGCGTTGGGAAGAACAGCAA+CGG | 0.665924 | 8_2:-24491933 | None:intergenic |
| ACGGACGCGAGAGAGACGAG+AGG | 0.677609 | 8_2:-24491914 | None:intergenic |
| CAACCCTCATCCATTCTCAG+TGG | 0.706213 | 8_2:-24494284 | None:intergenic |
| ATGCCACTGAGAATGGATGA+GGG | 0.727443 | 8_2:+24494281 | Msa1241130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAATTTTTTTTATTATTGT+AGG | + | chr8_2:24493394-24493413 | Msa1241130:intron | 10.0% |
| !!! | TTTTATTATTTTTATGTCAT+AGG | + | chr8_2:24494226-24494245 | Msa1241130:intron | 10.0% |
| !! | ATTATAACAACATAACATAA+TGG | - | chr8_2:24492806-24492825 | None:intergenic | 15.0% |
| !! | AAAGTTTCATTAATGAATTA+TGG | + | chr8_2:24493081-24493100 | Msa1241130:intron | 15.0% |
| !! | TAATCAAAGTAAAATGATTT+CGG | - | chr8_2:24493532-24493551 | None:intergenic | 15.0% |
| !! | AAAACTAGTTATGACAATTA+GGG | - | chr8_2:24492035-24492054 | None:intergenic | 20.0% |
| !! | AAACCAATAATCACAATTTA+GGG | - | chr8_2:24492679-24492698 | None:intergenic | 20.0% |
| !! | AAAACCAATAATCACAATTT+AGG | - | chr8_2:24492680-24492699 | None:intergenic | 20.0% |
| !!! | AATGAATTATGGTTTCTTTT+TGG | + | chr8_2:24493092-24493111 | Msa1241130:intron | 20.0% |
| !!! | ATGAATTATGGTTTCTTTTT+GGG | + | chr8_2:24493093-24493112 | Msa1241130:intron | 20.0% |
| !!! | CAAAAAAAAATGACATGTTT+TGG | - | chr8_2:24493185-24493204 | None:intergenic | 20.0% |
| !! | CTTTCTTCCATTTAATTATA+TGG | + | chr8_2:24494069-24494088 | Msa1241130:intron | 20.0% |
| !! | AAGTTCTCCATATAATTAAA+TGG | - | chr8_2:24494079-24494098 | None:intergenic | 20.0% |
| !! | AGAAATAATGAAAATGTCAT+TGG | + | chr8_2:24494576-24494595 | Msa1241130:CDS | 20.0% |
| ! | CAAAACTAGTTATGACAATT+AGG | - | chr8_2:24492036-24492055 | None:intergenic | 25.0% |
| ! | ATGTATACTTTGTAGTAAGA+AGG | + | chr8_2:24492139-24492158 | Msa1241130:intron | 25.0% |
| ! | TGTATACTTTGTAGTAAGAA+GGG | + | chr8_2:24492140-24492159 | Msa1241130:intron | 25.0% |
| ! | TGCTTGTTTATGATTTAAGA+AGG | + | chr8_2:24492331-24492350 | Msa1241130:intron | 25.0% |
| ! | GCTTGTTTATGATTTAAGAA+GGG | + | chr8_2:24492332-24492351 | Msa1241130:intron | 25.0% |
| !!! | CTTGTTTATTTTTCGATGTA+TGG | + | chr8_2:24492400-24492419 | Msa1241130:intron | 25.0% |
| !! | ATGATTTCTCGTAGAATTTT+AGG | + | chr8_2:24492425-24492444 | Msa1241130:intron | 25.0% |
| !! | TGATTTCTCGTAGAATTTTA+GGG | + | chr8_2:24492426-24492445 | Msa1241130:intron | 25.0% |
| ! | AATCCCTAAATTGTGATTAT+TGG | + | chr8_2:24492673-24492692 | Msa1241130:intron | 25.0% |
| !!! | GATTATTGGTTTTGTATTGA+TGG | + | chr8_2:24492687-24492706 | Msa1241130:intron | 25.0% |
| !! | TAATTAATGCTCAAGTTGTT+AGG | + | chr8_2:24492729-24492748 | Msa1241130:intron | 25.0% |
| !! | AATTAATGCTCAAGTTGTTA+GGG | + | chr8_2:24492730-24492749 | Msa1241130:intron | 25.0% |
| !!! | TCATATGTTTGTTGTGATTA+AGG | + | chr8_2:24493348-24493367 | Msa1241130:intron | 25.0% |
| !! | TTAAACTTACGATTTTGTCT+TGG | + | chr8_2:24493702-24493721 | Msa1241130:intron | 25.0% |
| !! | TAAACTTACGATTTTGTCTT+GGG | + | chr8_2:24493703-24493722 | Msa1241130:intron | 25.0% |
| ! | TCTAATGTACTGGAAATAAT+TGG | + | chr8_2:24493784-24493803 | Msa1241130:CDS | 25.0% |
| ! | AAATTAAACATCTGCAAGAT+TGG | - | chr8_2:24494025-24494044 | None:intergenic | 25.0% |
| ! | AATAATGAAAATGTCATTGG+AGG | + | chr8_2:24494579-24494598 | Msa1241130:CDS | 25.0% |
| AAAGAATCAGCACTTAGTTT+AGG | - | chr8_2:24491886-24491905 | None:intergenic | 30.0% | |
| TAAGAAGGGTAAATCAAATG+AGG | + | chr8_2:24492154-24492173 | Msa1241130:intron | 30.0% | |
| AGCAATGCCTACTTAATAAA+CGG | - | chr8_2:24492315-24492334 | None:intergenic | 30.0% | |
| ! | GATTTCTCGTAGAATTTTAG+GGG | + | chr8_2:24492427-24492446 | Msa1241130:intron | 30.0% |
| AAAAACAGAAACACAACGAT+GGG | - | chr8_2:24492602-24492621 | None:intergenic | 30.0% | |
| AAAAAACAGAAACACAACGA+TGG | - | chr8_2:24492603-24492622 | None:intergenic | 30.0% | |
| !!! | TATTGGTTTTGTATTGATGG+AGG | + | chr8_2:24492690-24492709 | Msa1241130:intron | 30.0% |
| !!! | ATTGGTTTTGTATTGATGGA+GGG | + | chr8_2:24492691-24492710 | Msa1241130:intron | 30.0% |
| TCAAAAGAGAAGTTATATCG+TGG | - | chr8_2:24492920-24492939 | None:intergenic | 30.0% | |
| ! | CTTCTCTTTTGATAAAACTC+TGG | + | chr8_2:24492928-24492947 | Msa1241130:intron | 30.0% |
| AATAGTGCGATAAAAGAACT+TGG | + | chr8_2:24492952-24492971 | Msa1241130:intron | 30.0% | |
| AAAGAATAGTGTGGCAAAAT+TGG | + | chr8_2:24492989-24493008 | Msa1241130:intron | 30.0% | |
| AAGAATAGTGTGGCAAAATT+GGG | + | chr8_2:24492990-24493009 | Msa1241130:intron | 30.0% | |
| TCTTTAGATGCACTATATGA+TGG | + | chr8_2:24493049-24493068 | Msa1241130:intron | 30.0% | |
| !!! | GTTTTGGAAATTTAGTAGTG+AGG | - | chr8_2:24493169-24493188 | None:intergenic | 30.0% |
| TTTCCATATTATACAGCCTT+GGG | + | chr8_2:24493288-24493307 | Msa1241130:CDS | 30.0% | |
| ! | AAACTTACGATTTTGTCTTG+GGG | + | chr8_2:24493704-24493723 | Msa1241130:intron | 30.0% |
| ! | ACTCTTTTTATAGTTGTGGA+TGG | + | chr8_2:24493727-24493746 | Msa1241130:intron | 30.0% |
| AGACATACAATCTAATGTAC+TGG | + | chr8_2:24493774-24493793 | Msa1241130:CDS | 30.0% | |
| TGGTATAAAACTTCCATTCT+TGG | + | chr8_2:24493861-24493880 | Msa1241130:CDS | 30.0% | |
| TTCACAATCATAACCAAGAA+TGG | - | chr8_2:24493877-24493896 | None:intergenic | 30.0% | |
| !! | CACATTTGAGATTCAAGTTT+TGG | + | chr8_2:24493915-24493934 | Msa1241130:CDS | 30.0% |
| ! | ACTTTACCAAGAAAGCATAT+GGG | + | chr8_2:24494333-24494352 | Msa1241130:CDS | 30.0% |
| AAATGTTCTGTAGCACATGT+TGG | + | chr8_2:24492075-24492094 | Msa1241130:intron | 35.0% | |
| AGAATAGTGCTATAGCAGTA+TGG | - | chr8_2:24492270-24492289 | None:intergenic | 35.0% | |
| CAATACGCCGTTTATTAAGT+AGG | + | chr8_2:24492305-24492324 | Msa1241130:intron | 35.0% | |
| AACAAGAGAAAAACAACCAC+AGG | - | chr8_2:24492369-24492388 | None:intergenic | 35.0% | |
| CAACATAACATAATGGCACA+AGG | - | chr8_2:24492799-24492818 | None:intergenic | 35.0% | |
| CACTATTACTATAAGCTGGA+TGG | + | chr8_2:24492867-24492886 | Msa1241130:intron | 35.0% | |
| CTTGTCACTAAAGAATAGTG+TGG | + | chr8_2:24492980-24492999 | Msa1241130:intron | 35.0% | |
| !!! | TCTTTTTGGGTTGTGTTAAC+CGG | + | chr8_2:24493106-24493125 | Msa1241130:intron | 35.0% |
| ATATGGAAAGAAATCCAGAC+TGG | - | chr8_2:24493277-24493296 | None:intergenic | 35.0% | |
| CTTTCCATATTATACAGCCT+TGG | + | chr8_2:24493287-24493306 | Msa1241130:CDS | 35.0% | |
| ATACCCAAGGCTGTATAATA+TGG | - | chr8_2:24493294-24493313 | None:intergenic | 35.0% | |
| TTGTTAGCAGTGACATTAGA+TGG | + | chr8_2:24493460-24493479 | Msa1241130:intron | 35.0% | |
| ! | GTTTAGTTGTGCTTCTGAAA+TGG | + | chr8_2:24493576-24493595 | Msa1241130:intron | 35.0% |
| AATATGTTGAAGAGTGACTG+AGG | + | chr8_2:24493661-24493680 | Msa1241130:intron | 35.0% | |
| ATATGTTGAAGAGTGACTGA+GGG | + | chr8_2:24493662-24493681 | Msa1241130:intron | 35.0% | |
| GATTGTATGTCTTCATCTTG+TGG | - | chr8_2:24493766-24493785 | None:intergenic | 35.0% | |
| !! | TGGAAGTTTTATACCAAGTG+TGG | - | chr8_2:24493857-24493876 | None:intergenic | 35.0% |
| CCTATAAGACACACAAACAT+GGG | - | chr8_2:24493998-24494017 | None:intergenic | 35.0% | |
| TCCTATAAGACACACAAACA+TGG | - | chr8_2:24493999-24494018 | None:intergenic | 35.0% | |
| GAATCAAATCCAGTTTAACC+TGG | + | chr8_2:24494307-24494326 | Msa1241130:CDS | 35.0% | |
| ! | GACTTTACCAAGAAAGCATA+TGG | + | chr8_2:24494332-24494351 | Msa1241130:CDS | 35.0% |
| ATTAGTCCCATATGCTTTCT+TGG | - | chr8_2:24494342-24494361 | None:intergenic | 35.0% | |
| AGCATATGGGACTAATTATG+TGG | + | chr8_2:24494346-24494365 | Msa1241130:CDS | 35.0% | |
| TTTCATCTCAATTGCATGTC+AGG | + | chr8_2:24494528-24494547 | Msa1241130:intron | 35.0% | |
| TCTGCATGATGAACAATACA+AGG | - | chr8_2:24494559-24494578 | None:intergenic | 35.0% | |
| ATGAAAATGTCATTGGAGGA+TGG | + | chr8_2:24494583-24494602 | Msa1241130:CDS | 35.0% | |
| TGTTATGTGTAGTTGTGTGT+CGG | + | chr8_2:24494630-24494649 | Msa1241130:CDS | 35.0% | |
| AACTTACGATGATGAGCGTT+GGG | - | chr8_2:24491950-24491969 | None:intergenic | 40.0% | |
| AAACTTACGATGATGAGCGT+TGG | - | chr8_2:24491951-24491970 | None:intergenic | 40.0% | |
| AAAAACAACCACAGGCACAA+AGG | - | chr8_2:24492361-24492380 | None:intergenic | 40.0% | |
| ! | GACTTATGATGGTGAGAAGA+GGG | - | chr8_2:24492549-24492568 | None:intergenic | 40.0% |
| ! | AGACTTATGATGGTGAGAAG+AGG | - | chr8_2:24492550-24492569 | None:intergenic | 40.0% |
| CAGAGAAATACACAAGGAGA+GGG | - | chr8_2:24492577-24492596 | None:intergenic | 40.0% | |
| ACAGAGAAATACACAAGGAG+AGG | - | chr8_2:24492578-24492597 | None:intergenic | 40.0% | |
| GCAGCACTATTACTATAAGC+TGG | + | chr8_2:24492863-24492882 | Msa1241130:intron | 40.0% | |
| TTCAAGAACACATTCCAGTC+TGG | + | chr8_2:24493260-24493279 | Msa1241130:CDS | 40.0% | |
| GAGCAAACCTTTGCAGATAT+GGG | + | chr8_2:24493416-24493435 | Msa1241130:CDS | 40.0% | |
| TCTTTGTCCCATATCTGCAA+AGG | - | chr8_2:24493426-24493445 | None:intergenic | 40.0% | |
| TTGCAGATATGGGACAAAGA+AGG | + | chr8_2:24493426-24493445 | Msa1241130:CDS | 40.0% | |
| !! | GTTGTGCTTCTGAAATGGTT+AGG | + | chr8_2:24493581-24493600 | Msa1241130:intron | 40.0% |
| AATGGACAGCACAACACATA+AGG | - | chr8_2:24493613-24493632 | None:intergenic | 40.0% | |
| TATGTGTTGTGCTGTCCATT+TGG | + | chr8_2:24493613-24493632 | Msa1241130:intron | 40.0% | |
| CCTTTCATAACATGGCCAAA+TGG | - | chr8_2:24493631-24493650 | None:intergenic | 40.0% | |
| CCATTTGGCCATGTTATGAA+AGG | + | chr8_2:24493628-24493647 | Msa1241130:intron | 40.0% | |
| CACATCAGCCTTTCATAACA+TGG | - | chr8_2:24493639-24493658 | None:intergenic | 40.0% | |
| ! | GGGGACTCTTTTTATAGTTG+TGG | + | chr8_2:24493723-24493742 | Msa1241130:intron | 40.0% |
| CATCTTGTGGTCGCTTAATA+TGG | - | chr8_2:24493753-24493772 | None:intergenic | 40.0% | |
| CCCATGTTTGTGTGTCTTAT+AGG | + | chr8_2:24493995-24494014 | Msa1241130:intron | 40.0% | |
| AGTGGCATAGTGCAAATGTA+CGG | - | chr8_2:24494269-24494288 | None:intergenic | 40.0% | |
| TAAAGTCAGCCAGGTTAAAC+TGG | - | chr8_2:24494319-24494338 | None:intergenic | 40.0% | |
| CATAACATTCAACCATCTCC+TGG | - | chr8_2:24494617-24494636 | None:intergenic | 40.0% | |
| GCGATTCACAGATAGAGAGA+GGG | - | chr8_2:24492006-24492025 | None:intergenic | 45.0% | |
| TGCGATTCACAGATAGAGAG+AGG | - | chr8_2:24492007-24492026 | None:intergenic | 45.0% | |
| ! | GCACATGTTGGAAGCTTGTT+CGG | + | chr8_2:24492087-24492106 | Msa1241130:intron | 45.0% |
| ATGCAACGGACAAAGCTGTT+TGG | - | chr8_2:24492512-24492531 | None:intergenic | 45.0% | |
| TCTCAGAGCAACAGATGCAA+CGG | - | chr8_2:24492526-24492545 | None:intergenic | 45.0% | |
| AGAGGGTTGGAGACTTATGA+TGG | - | chr8_2:24492560-24492579 | None:intergenic | 45.0% | |
| GAAATACACAAGGAGAGGGT+TGG | - | chr8_2:24492573-24492592 | None:intergenic | 45.0% | |
| TGGGCACAGAGAAATACACA+AGG | - | chr8_2:24492583-24492602 | None:intergenic | 45.0% | |
| ! | TCGAGAGCACAATGGGTTTA+GGG | - | chr8_2:24492654-24492673 | None:intergenic | 45.0% |
| ! | TTCGAGAGCACAATGGGTTT+AGG | - | chr8_2:24492655-24492674 | None:intergenic | 45.0% |
| ! | TAGGGATTCGAGAGCACAAT+GGG | - | chr8_2:24492661-24492680 | None:intergenic | 45.0% |
| ! | TTAGGGATTCGAGAGCACAA+TGG | - | chr8_2:24492662-24492681 | None:intergenic | 45.0% |
| CTAGCAATAGAGCATACACG+AGG | - | chr8_2:24492757-24492776 | None:intergenic | 45.0% | |
| ATACAGCCTTGGGTATGATG+TGG | + | chr8_2:24493298-24493317 | Msa1241130:intron | 45.0% | |
| GGAGCAAACCTTTGCAGATA+TGG | + | chr8_2:24493415-24493434 | Msa1241130:intron | 45.0% | |
| TTATACCAAGTGTGGCAGCT+GGG | - | chr8_2:24493849-24493868 | None:intergenic | 45.0% | |
| TTTATACCAAGTGTGGCAGC+TGG | - | chr8_2:24493850-24493869 | None:intergenic | 45.0% | |
| ! | ACGTGCATCGACAGCAATTT+AGG | - | chr8_2:24494193-24494212 | None:intergenic | 45.0% |
| TTGCACTATGCCACTGAGAA+TGG | + | chr8_2:24494274-24494293 | Msa1241130:CDS | 45.0% | |
| TATGCCACTGAGAATGGATG+AGG | + | chr8_2:24494280-24494299 | Msa1241130:CDS | 45.0% | |
| ATGCCACTGAGAATGGATGA+GGG | + | chr8_2:24494281-24494300 | Msa1241130:CDS | 45.0% | |
| CTTTCTTGGTAAAGTCAGCC+AGG | - | chr8_2:24494328-24494347 | None:intergenic | 45.0% | |
| TTCTCAAGCGACAGTTTGCA+TGG | - | chr8_2:24494391-24494410 | None:intergenic | 45.0% | |
| ! | ATGCAAACTGTCGCTTGAGA+AGG | + | chr8_2:24494390-24494409 | Msa1241130:CDS | 45.0% |
| CTTCTCTGATCGTCTCTACT+CGG | + | chr8_2:24494418-24494437 | Msa1241130:CDS | 45.0% | |
| GGTACAACTTGAACTCTGGT+GGG | - | chr8_2:24494454-24494473 | None:intergenic | 45.0% | |
| AGGTACAACTTGAACTCTGG+TGG | - | chr8_2:24494455-24494474 | None:intergenic | 45.0% | |
| ! | GGAAGGTACAACTTGAACTC+TGG | - | chr8_2:24494458-24494477 | None:intergenic | 45.0% |
| CAAGTTGTACCTTCCAATGC+AGG | + | chr8_2:24494463-24494482 | Msa1241130:CDS | 45.0% | |
| CATCTCATACCTGCATTGGA+AGG | - | chr8_2:24494475-24494494 | None:intergenic | 45.0% | |
| CAGACATCTCATACCTGCAT+TGG | - | chr8_2:24494479-24494498 | None:intergenic | 45.0% | |
| ATGGAATTGATGCCAGGAGA+TGG | + | chr8_2:24494602-24494621 | Msa1241130:CDS | 45.0% | |
| ! | AGCGTTGGGAAGAACAGCAA+CGG | - | chr8_2:24491936-24491955 | None:intergenic | 50.0% |
| AAGGGTTACCTTTGTGCCTG+TGG | + | chr8_2:24492350-24492369 | Msa1241130:intron | 50.0% | |
| AGCCTTGGGTATGATGTGGT+TGG | + | chr8_2:24493302-24493321 | Msa1241130:intron | 50.0% | |
| AGCCAACCACATCATACCCA+AGG | - | chr8_2:24493307-24493326 | None:intergenic | 50.0% | |
| GTCCACATACATTACGTGCC+CGG | + | chr8_2:24493819-24493838 | Msa1241130:CDS | 50.0% | |
| CATGGGCAGACTTACACACT+TGG | - | chr8_2:24493981-24494000 | None:intergenic | 50.0% | |
| CAACCCTCATCCATTCTCAG+TGG | - | chr8_2:24494287-24494306 | None:intergenic | 50.0% | |
| CACTGAGAATGGATGAGGGT+TGG | + | chr8_2:24494285-24494304 | Msa1241130:CDS | 50.0% | |
| TGTGGAGACACTACGAGTTC+AGG | + | chr8_2:24494364-24494383 | Msa1241130:CDS | 50.0% | |
| TGATCGTCTCTACTCGGAAG+AGG | + | chr8_2:24494424-24494443 | Msa1241130:CDS | 50.0% | |
| TGGAGGATGGAATTGATGCC+AGG | + | chr8_2:24494596-24494615 | Msa1241130:CDS | 50.0% | |
| !! | GGCACTGGTTGGTACGATGT+AGG | + | chr8_2:24493138-24493157 | Msa1241130:intron | 55.0% |
| AGCCGGGCACGTAATGTATG+TGG | - | chr8_2:24493824-24493843 | None:intergenic | 55.0% | |
| GTTGTGTTAACCGGTGCCCC+CGG | + | chr8_2:24493115-24493134 | Msa1241130:intron | 60.0% | |
| TTGTGTTAACCGGTGCCCCC+GGG | + | chr8_2:24493116-24493135 | Msa1241130:intron | 60.0% | |
| ATCGTACCAACCAGTGCCCC+GGG | - | chr8_2:24493136-24493155 | None:intergenic | 60.0% | |
| CATCGTACCAACCAGTGCCC+CGG | - | chr8_2:24493137-24493156 | None:intergenic | 60.0% | |
| CGCGAGAGAGACGAGAGGAG+AGG | - | chr8_2:24491912-24491931 | None:intergenic | 65.0% | |
| ACGGACGCGAGAGAGACGAG+AGG | - | chr8_2:24491917-24491936 | None:intergenic | 65.0% | |
| TGTGTTAACCGGTGCCCCCG+GGG | + | chr8_2:24493117-24493136 | Msa1241130:intron | 65.0% | |
| TCGTACCAACCAGTGCCCCG+GGG | - | chr8_2:24493135-24493154 | None:intergenic | 65.0% | |
| AGTGTGGCAGCTGGGTCAGC+CGG | - | chr8_2:24493841-24493860 | None:intergenic | 65.0% | |
| GCTGACCCAGCTGCCACACT+TGG | + | chr8_2:24493841-24493860 | Msa1241130:CDS | 65.0% | |
| CGTACCAACCAGTGCCCCGG+GGG | - | chr8_2:24493134-24493153 | None:intergenic | 70.0% | |
| GTGTGGCAGCTGGGTCAGCC+GGG | - | chr8_2:24493840-24493859 | None:intergenic | 70.0% | |
| ! | AACCAGTGCCCCGGGGGCAC+CGG | - | chr8_2:24493128-24493147 | None:intergenic | 75.0% |
| ! | AACCGGTGCCCCCGGGGCAC+TGG | + | chr8_2:24493123-24493142 | Msa1241130:intron | 80.0% |
| !!! | GGTGCCCCCGGGGCACTGGT+TGG | + | chr8_2:24493127-24493146 | Msa1241130:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 24491882 | 24494666 | 24491882 | ID=Msa1241130;Name=Msa1241130 |
| chr8_2 | mRNA | 24491882 | 24494666 | 24491882 | ID=Msa1241130-mRNA-1;Parent=Msa1241130;Name=Msa1241130-mRNA-1;_AED=0.23;_eAED=0.35;_QI=84|0.6|0.66|1|0.8|0.66|6|0|232 |
| chr8_2 | exon | 24491882 | 24491962 | 24491882 | ID=Msa1241130-mRNA-1:exon:8676;Parent=Msa1241130-mRNA-1 |
| chr8_2 | exon | 24493254 | 24493309 | 24493254 | ID=Msa1241130-mRNA-1:exon:8677;Parent=Msa1241130-mRNA-1 |
| chr8_2 | exon | 24493416 | 24493447 | 24493416 | ID=Msa1241130-mRNA-1:exon:8678;Parent=Msa1241130-mRNA-1 |
| chr8_2 | exon | 24493740 | 24493999 | 24493740 | ID=Msa1241130-mRNA-1:exon:8679;Parent=Msa1241130-mRNA-1 |
| chr8_2 | exon | 24494248 | 24494484 | 24494248 | ID=Msa1241130-mRNA-1:exon:8680;Parent=Msa1241130-mRNA-1 |
| chr8_2 | exon | 24494550 | 24494666 | 24494550 | ID=Msa1241130-mRNA-1:exon:8681;Parent=Msa1241130-mRNA-1 |
| chr8_2 | five_prime_UTR | 24491882 | 24491962 | 24491882 | ID=Msa1241130-mRNA-1:five_prime_utr;Parent=Msa1241130-mRNA-1 |
| chr8_2 | five_prime_UTR | 24493254 | 24493256 | 24493254 | ID=Msa1241130-mRNA-1:five_prime_utr;Parent=Msa1241130-mRNA-1 |
| chr8_2 | CDS | 24493257 | 24493309 | 24493257 | ID=Msa1241130-mRNA-1:cds;Parent=Msa1241130-mRNA-1 |
| chr8_2 | CDS | 24493416 | 24493447 | 24493416 | ID=Msa1241130-mRNA-1:cds;Parent=Msa1241130-mRNA-1 |
| chr8_2 | CDS | 24493740 | 24493999 | 24493740 | ID=Msa1241130-mRNA-1:cds;Parent=Msa1241130-mRNA-1 |
| chr8_2 | CDS | 24494248 | 24494484 | 24494248 | ID=Msa1241130-mRNA-1:cds;Parent=Msa1241130-mRNA-1 |
| chr8_2 | CDS | 24494550 | 24494666 | 24494550 | ID=Msa1241130-mRNA-1:cds;Parent=Msa1241130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
