AlfalfaGEDB | Msa1241130

M. sativa cultivar zhongmu-4 / Msa1241130

KEGG: -
GO: -
PFAM: PF05018.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1241130	XP_024627580.1	96.907	194	0	1	1	194	1	188	1.38e-135	389

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1241130	sp\|Q9VKV8\|CFA20_DROME	78.866	194	35	1	1	194	1	188	1.30e-118	338

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1241130	B7FL68	96.907	194	0	1	1	194	1	188	6.60e-136	389

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0009420	Msa1241130	-0.818954	1.497069e-52	-8.615850e-47
Msa0044540	Msa1241130	0.803915	2.775267e-49	-8.615850e-47
Msa0057680	Msa1241130	0.812877	3.397618e-51	-8.615850e-47
Msa0068740	Msa1241130	0.801692	7.985726e-49	-8.615850e-47
Msa0090320	Msa1241130	-0.813673	2.272347e-51	-8.615850e-47
Msa0105260	Msa1241130	-0.814141	1.791739e-51	-8.615850e-47
Msa0137640	Msa1241130	-0.819701	1.011604e-52	-8.615850e-47
Msa0182740	Msa1241130	-0.816043	6.776277e-52	-8.615850e-47
Msa0191840	Msa1241130	-0.821348	4.236341e-53	-8.615850e-47
Msa0201070	Msa1241130	-0.825986	3.475312e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1241130	MtrunA17_Chr8g0353791	96.907	194	0	1	1	194	1	188	1.27e-139	389

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1241130	AT3G12300.1	85.052	194	23	1	1	194	1	188	2.32e-126	355

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Find 61 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTACGATGATGAGCGT+TGG	0.540100	8_2:-24491948	None:intergenic
AAAGAATCAGCACTTAGTTT+AGG	0.410331	8_2:-24491883	None:intergenic
AACTTACGATGATGAGCGTT+GGG	0.454005	8_2:-24491947	None:intergenic
AATAATGAAAATGTCATTGG+AGG	0.544133	8_2:+24494579	Msa1241130:CDS
ACGGACGCGAGAGAGACGAG+AGG	0.677609	8_2:-24491914	None:intergenic
ACTTTACCAAGAAAGCATAT+GGG	0.601556	8_2:+24494333	Msa1241130:CDS
AGAAATAATGAAAATGTCAT+TGG	0.467147	8_2:+24494576	Msa1241130:CDS
AGACATACAATCTAATGTAC+TGG	0.495892	8_2:+24493774	Msa1241130:CDS
AGCATATGGGACTAATTATG+TGG	0.561284	8_2:+24494346	Msa1241130:CDS
AGCGTTGGGAAGAACAGCAA+CGG	0.665924	8_2:-24491933	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAATCAGCACTTAGTTT+AGG	-	chr8_2:24491886-24491905	None:intergenic	30.0%
TAAGAAGGGTAAATCAAATG+AGG	+	chr8_2:24492154-24492173	Msa1241130:intron	30.0%
AGCAATGCCTACTTAATAAA+CGG	-	chr8_2:24492315-24492334	None:intergenic	30.0%
AAAAACAGAAACACAACGAT+GGG	-	chr8_2:24492602-24492621	None:intergenic	30.0%
AAAAAACAGAAACACAACGA+TGG	-	chr8_2:24492603-24492622	None:intergenic	30.0%
TCAAAAGAGAAGTTATATCG+TGG	-	chr8_2:24492920-24492939	None:intergenic	30.0%
AATAGTGCGATAAAAGAACT+TGG	+	chr8_2:24492952-24492971	Msa1241130:intron	30.0%
AAAGAATAGTGTGGCAAAAT+TGG	+	chr8_2:24492989-24493008	Msa1241130:intron	30.0%
AAGAATAGTGTGGCAAAATT+GGG	+	chr8_2:24492990-24493009	Msa1241130:intron	30.0%
TCTTTAGATGCACTATATGA+TGG	+	chr8_2:24493049-24493068	Msa1241130:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	24491882	24494666	24491882	ID=Msa1241130;Name=Msa1241130
chr8_2	mRNA	24491882	24494666	24491882	ID=Msa1241130-mRNA-1;Parent=Msa1241130;Name=Msa1241130-mRNA-1;_AED=0.23;_eAED=0.35;_QI=84\|0.6\|0.66\|1\|0.8\|0.66\|6\|0\|232
chr8_2	exon	24491882	24491962	24491882	ID=Msa1241130-mRNA-1:exon:8676;Parent=Msa1241130-mRNA-1
chr8_2	exon	24493254	24493309	24493254	ID=Msa1241130-mRNA-1:exon:8677;Parent=Msa1241130-mRNA-1
chr8_2	exon	24493416	24493447	24493416	ID=Msa1241130-mRNA-1:exon:8678;Parent=Msa1241130-mRNA-1
chr8_2	exon	24493740	24493999	24493740	ID=Msa1241130-mRNA-1:exon:8679;Parent=Msa1241130-mRNA-1
chr8_2	exon	24494248	24494484	24494248	ID=Msa1241130-mRNA-1:exon:8680;Parent=Msa1241130-mRNA-1
chr8_2	exon	24494550	24494666	24494550	ID=Msa1241130-mRNA-1:exon:8681;Parent=Msa1241130-mRNA-1
chr8_2	five_prime_UTR	24491882	24491962	24491882	ID=Msa1241130-mRNA-1:five_prime_utr;Parent=Msa1241130-mRNA-1
chr8_2	five_prime_UTR	24493254	24493256	24493254	ID=Msa1241130-mRNA-1:five_prime_utr;Parent=Msa1241130-mRNA-1
chr8_2	CDS	24493257	24493309	24493257	ID=Msa1241130-mRNA-1:cds;Parent=Msa1241130-mRNA-1
chr8_2	CDS	24493416	24493447	24493416	ID=Msa1241130-mRNA-1:cds;Parent=Msa1241130-mRNA-1
chr8_2	CDS	24493740	24493999	24493740	ID=Msa1241130-mRNA-1:cds;Parent=Msa1241130-mRNA-1
chr8_2	CDS	24494248	24494484	24494248	ID=Msa1241130-mRNA-1:cds;Parent=Msa1241130-mRNA-1
chr8_2	CDS	24494550	24494666	24494550	ID=Msa1241130-mRNA-1:cds;Parent=Msa1241130-mRNA-1

Gene Sequence

>Msa1241130

ATGTTCAAGAACACATTCCAGTCTGGATTTCTTTCCATATTATACAGCCTTGGGAGCAAACCTTTGCAGATATGGGACAAAGAAGTTGTGGATGGCCATATTAAGCGACCACAAGATGAAGACATACAATCTAATGTACTGGAAATAATTGGATCGAATATTCAGTCCACATACATTACGTGCCCGGCTGACCCAGCTGCCACACTTGGTATAAAACTTCCATTCTTGGTTATGATTGTGAAGAATCTAAAGAAGTACTTCACATTTGAGATTCAAGTTTTGGATGATAAGAATGTCAGACGACGATTTCGAGCTTCTAATTTCCAAGTGTGTAAGTCTGCCCATGCTGTCACTAGAGTAAAGCCGTACATTTGCACTATGCCACTGAGAATGGATGAGGGTTGGAATCAAATCCAGTTTAACCTGGCTGACTTTACCAAGAAAGCATATGGGACTAATTATGTGGAGACACTACGAGTTCAGGTCCATGCAAACTGTCGCTTGAGAAGGATATACTTCTCTGATCGTCTCTACTCGGAAGAGGAACTCCCACCAGAGTTCAAGTTGTACCTTCCAATGCAGGTTTCACCTTGTATTGTTCATCATGCAGAAATAATGAAAATGTCATTGGAGGATGGAATTGATGCCAGGAGATGGTTGAATGTTATGTGTAGTTGTGTGTCGGCTTCCCTGCACTAA

Protein sequence

>Msa1241130

MFKNTFQSGFLSILYSLGSKPLQIWDKEVVDGHIKRPQDEDIQSNVLEIIGSNIQSTYITCPADPAATLGIKLPFLVMIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQVCKSAHAVTRVKPYICTMPLRMDEGWNQIQFNLADFTKKAYGTNYVETLRVQVHANCRLRRIYFSDRLYSEEELPPEFKLYLPMQVSPCIVHHAEIMKMSLEDGIDARRWLNVMCSCVSASLH*