Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983340 | KEH16847.1 | 97.409 | 193 | 1 | 1 | 1 | 189 | 1 | 193 | 5.88e-128 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983340 | sp|Q04050|NU4M_BRACM | 94.737 | 133 | 7 | 0 | 52 | 184 | 334 | 466 | 1.59e-80 | 250 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983340 | A0A072THH4 | 97.409 | 193 | 1 | 1 | 1 | 189 | 1 | 193 | 2.81e-128 | 374 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0983340 | Msa1391990 | 0.948300 | 1.239030e-106 | -8.615850e-47 |
| Msa0983340 | Msa1392030 | 0.800766 | 1.235577e-48 | -8.615850e-47 |
| Msa0983340 | Msa1453860 | 0.884535 | 1.764338e-71 | -8.615850e-47 |
| Msa0920020 | Msa0983340 | 0.910997 | 1.000653e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983340 | MtrunA17_MTg0491601 | 100.000 | 134 | 0 | 0 | 56 | 189 | 1 | 134 | 1.37e-93 | 268 |
| Msa0983340 | MtrunA17_Chr7g0264331 | 82.353 | 51 | 9 | 0 | 12 | 62 | 12 | 62 | 3.97e-23 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983340 | ATMG00580.1 | 93.985 | 133 | 8 | 0 | 52 | 184 | 334 | 466 | 3.37e-80 | 247 |
Find 62 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATATAATCGTGTGGTTTC+TGG | 0.115346 | 6_4:+26442399 | Msa0983340:CDS |
| GAACACCAACACATAGAAAA+AGG | 0.215780 | 6_4:-26442146 | None:intergenic |
| CATTTGGATCGGAGAATTTA+TGG | 0.225223 | 6_4:-26442443 | None:intergenic |
| TGGCTACTAAGCTATTTCTT+TGG | 0.294828 | 6_4:-26442329 | None:intergenic |
| AACAAGAAAAGGTATAAATA+TGG | 0.320507 | 6_4:-26442478 | None:intergenic |
| CCTGGTACTAGCAGCTTTAT+CGG | 0.335139 | 6_4:+26442279 | Msa0983340:CDS |
| ATGGAAACTTCTCTGCCATT+TGG | 0.362258 | 6_4:-26442459 | None:intergenic |
| ACTCGACTTGTTAGATATTA+CGG | 0.365139 | 6_4:+26442186 | Msa0983340:CDS |
| AGAGGGTCTTATGGAGGGAG+GGG | 0.398258 | 6_4:+26441614 | None:intergenic |
| TGCCCTTCGGCTCGGCAATA+TGG | 0.398365 | 6_4:-26441704 | None:intergenic |
| CTGGTACTAGCAGCTTTATC+GGG | 0.404966 | 6_4:+26442280 | Msa0983340:CDS |
| AAAGAGGGTCTTATGGAGGG+AGG | 0.428219 | 6_4:+26441612 | None:intergenic |
| AGTACCAGGTGAACTCATAT+TGG | 0.455273 | 6_4:-26442265 | None:intergenic |
| GGAGAATTTATGGAGGAAAT+CGG | 0.458292 | 6_4:-26442433 | None:intergenic |
| TTCCTTTATGAGGTCCTATC+GGG | 0.461257 | 6_4:-26441662 | None:intergenic |
| ACAGCTCCCGTTCCTTTATG+AGG | 0.463512 | 6_4:-26441672 | None:intergenic |
| TAGGCGCGGCGTATTCCCTT+TGG | 0.468628 | 6_4:+26442376 | Msa0983340:CDS |
| CATTTCCTTCTCTTCCACTT+TGG | 0.469790 | 6_4:+26442242 | Msa0983340:CDS |
| AAGGAACGGGAGCTGTTGAT+AGG | 0.472146 | 6_4:+26441679 | Msa0983340:CDS |
| AAGGAAATGGTAGAGAGATT+CGG | 0.474409 | 6_4:-26442228 | None:intergenic |
| GTTCCTTTATGAGGTCCTAT+CGG | 0.485880 | 6_4:-26441663 | None:intergenic |
| CCGATAAAGCTGCTAGTACC+AGG | 0.489275 | 6_4:-26442279 | None:intergenic |
| GTAGCCACATTAGCAGCGCT+TGG | 0.489321 | 6_4:+26442345 | Msa0983340:CDS |
| CATAAATTCTCCGATCCAAA+TGG | 0.490582 | 6_4:+26442444 | Msa0983340:CDS |
| ATAGGACCTCATAAAGGAAC+GGG | 0.491037 | 6_4:+26441666 | Msa0983340:CDS |
| TTGGAAAGCTCCTACTGAGA+TGG | 0.492362 | 6_4:-26442310 | None:intergenic |
| GAGGGTCTTATGGAGGGAGG+GGG | 0.497592 | 6_4:+26441615 | None:intergenic |
| AACTTCTCTGCCATTTGGAT+CGG | 0.499588 | 6_4:-26442454 | None:intergenic |
| ATCCCGATAGGACCTCATAA+AGG | 0.502596 | 6_4:+26441660 | Msa0983340:CDS |
| TAGCCACATTAGCAGCGCTT+GGG | 0.509701 | 6_4:+26442346 | Msa0983340:CDS |
| CATCCCAAGCGCTGCTAATG+TGG | 0.509853 | 6_4:-26442349 | None:intergenic |
| GTCGCCCCTCCAACAAGAAA+AGG | 0.514206 | 6_4:-26442489 | None:intergenic |
| AAGAGGGTCTTATGGAGGGA+GGG | 0.525502 | 6_4:+26441613 | None:intergenic |
| ACCGATGTTAAGTCATGGAC+TGG | 0.526914 | 6_4:+26442113 | Msa0983340:CDS |
| TGGAAAGCTCCTACTGAGAT+GGG | 0.532780 | 6_4:-26442309 | None:intergenic |
| GAGAAAGAGGGTCTTATGGA+GGG | 0.534497 | 6_4:+26441609 | None:intergenic |
| GTTCCATATTGCCGAGCCGA+AGG | 0.537919 | 6_4:+26441701 | Msa0983340:CDS |
| CACACGATTATATAGCCAAA+GGG | 0.551184 | 6_4:-26442391 | None:intergenic |
| TTATGAGGTCCTATCGGGAT+AGG | 0.555137 | 6_4:-26441657 | None:intergenic |
| ATTGGCCAAAGTGGAAGAGA+AGG | 0.560732 | 6_4:-26442247 | None:intergenic |
| CAAAGTGGAAGAGAAGGAAA+TGG | 0.570201 | 6_4:-26442241 | None:intergenic |
| CGTACAGAAGTGCTGCCCTT+CGG | 0.574948 | 6_4:-26441717 | None:intergenic |
| TGAACTCATATTGGCCAAAG+TGG | 0.575500 | 6_4:-26442256 | None:intergenic |
| CCTTTGGCTATATAATCGTG+TGG | 0.579601 | 6_4:+26442392 | Msa0983340:CDS |
| TTCTTTGGTAGTTCAACGGA+CGG | 0.589775 | 6_4:-26442511 | None:intergenic |
| TTCCATATTGCCGAGCCGAA+GGG | 0.591830 | 6_4:+26441702 | Msa0983340:CDS |
| GAGGTCCTATCGGGATAGGT+AGG | 0.596204 | 6_4:-26441653 | None:intergenic |
| AGAAGTGCTGCCCTTCGGCT+CGG | 0.601630 | 6_4:-26441712 | None:intergenic |
| TTGGCCAATATGAGTTCACC+TGG | 0.605951 | 6_4:+26442261 | Msa0983340:CDS |
| GGGGAATTTCCCATCTCAGT+AGG | 0.607104 | 6_4:+26442300 | Msa0983340:CDS |
| CCACACGATTATATAGCCAA+AGG | 0.624841 | 6_4:-26442392 | None:intergenic |
| GATAGGACCTCATAAAGGAA+CGG | 0.630915 | 6_4:+26441665 | Msa0983340:CDS |
| TAACAAGTCGAGTCTTATGT+CGG | 0.641549 | 6_4:-26442176 | None:intergenic |
| CTGGGCCTACCTATCCCGAT+AGG | 0.650197 | 6_4:+26441648 | Msa0983340:CDS |
| AGTCCATGACTTAACATCGG+TGG | 0.656046 | 6_4:-26442111 | None:intergenic |
| TGGTACTAGCAGCTTTATCG+GGG | 0.656393 | 6_4:+26442281 | Msa0983340:CDS |
| GACTTGTTAGATATTACGGA+GGG | 0.657876 | 6_4:+26442190 | Msa0983340:CDS |
| ATTCCACCGATGTTAAGTCA+TGG | 0.659227 | 6_4:+26442108 | Msa0983340:CDS |
| CGACTTGTTAGATATTACGG+AGG | 0.668703 | 6_4:+26442189 | Msa0983340:CDS |
| AATGGTAGAGAGATTCGGCA+TGG | 0.678484 | 6_4:-26442223 | None:intergenic |
| TTGGATCGGAGAATTTATGG+AGG | 0.680463 | 6_4:-26442440 | None:intergenic |
| ACCAGTCCATGACTTAACAT+CGG | 0.686650 | 6_4:-26442114 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACCCTTATGTAAAAAATTT+CGG | + | chr6_4:26441897-26441916 | Msa0983340:intron | 20.0% |
| !!! | AACAAGAAAAGGTATAAATA+TGG | - | chr6_4:26442481-26442500 | None:intergenic | 20.0% |
| !!! | ATATTTATACCTTTTCTTGT+TGG | + | chr6_4:26442480-26442499 | Msa0983340:CDS | 20.0% |
| !! | AACCCTTATGTAAAAAATTT+CGG | + | chr6_4:26441897-26441916 | Msa0983340:intron | 20.0% |
| !!! | AACAAGAAAAGGTATAAATA+TGG | - | chr6_4:26442481-26442500 | None:intergenic | 20.0% |
| !!! | ATATTTATACCTTTTCTTGT+TGG | + | chr6_4:26442480-26442499 | Msa0983340:CDS | 20.0% |
| ! | ACCCTTATGTAAAAAATTTC+GGG | + | chr6_4:26441898-26441917 | Msa0983340:intron | 25.0% |
| !!! | CTAACTTCACTTTTTTTTTC+TGG | - | chr6_4:26441975-26441994 | None:intergenic | 25.0% |
| ! | ACCCTTATGTAAAAAATTTC+GGG | + | chr6_4:26441898-26441917 | Msa0983340:intron | 25.0% |
| !!! | CTAACTTCACTTTTTTTTTC+TGG | - | chr6_4:26441975-26441994 | None:intergenic | 25.0% |
| !!! | CCCCGAAATTTTTTACATAA+GGG | - | chr6_4:26441902-26441921 | None:intergenic | 30.0% |
| CCCTTATGTAAAAAATTTCG+GGG | + | chr6_4:26441899-26441918 | Msa0983340:intron | 30.0% | |
| CCTTATGTAAAAAATTTCGG+GGG | + | chr6_4:26441900-26441919 | Msa0983340:intron | 30.0% | |
| CTTATGTAAAAAATTTCGGG+GGG | + | chr6_4:26441901-26441920 | Msa0983340:intron | 30.0% | |
| AACACCAACACATAGAAAAA+GGG | - | chr6_4:26442148-26442167 | None:intergenic | 30.0% | |
| !! | ACTCGACTTGTTAGATATTA+CGG | + | chr6_4:26442186-26442205 | Msa0983340:CDS | 30.0% |
| ! | TTTATACCTTTTCTTGTTGG+AGG | + | chr6_4:26442483-26442502 | Msa0983340:CDS | 30.0% |
| ! | TTATACCTTTTCTTGTTGGA+GGG | + | chr6_4:26442484-26442503 | Msa0983340:CDS | 30.0% |
| !!! | CCCCGAAATTTTTTACATAA+GGG | - | chr6_4:26441902-26441921 | None:intergenic | 30.0% |
| CCCTTATGTAAAAAATTTCG+GGG | + | chr6_4:26441899-26441918 | Msa0983340:intron | 30.0% | |
| CCTTATGTAAAAAATTTCGG+GGG | + | chr6_4:26441900-26441919 | Msa0983340:intron | 30.0% | |
| CTTATGTAAAAAATTTCGGG+GGG | + | chr6_4:26441901-26441920 | Msa0983340:intron | 30.0% | |
| AACACCAACACATAGAAAAA+GGG | - | chr6_4:26442148-26442167 | None:intergenic | 30.0% | |
| !! | ACTCGACTTGTTAGATATTA+CGG | + | chr6_4:26442186-26442205 | Msa0983340:CDS | 30.0% |
| ! | TTTATACCTTTTCTTGTTGG+AGG | + | chr6_4:26442483-26442502 | Msa0983340:CDS | 30.0% |
| ! | TTATACCTTTTCTTGTTGGA+GGG | + | chr6_4:26442484-26442503 | Msa0983340:CDS | 30.0% |
| ! | ATAGGTACTTTTCAATGCAG+CGG | - | chr6_4:26441767-26441786 | None:intergenic | 35.0% |
| AAGTACCTATGCACTATTTC+CGG | + | chr6_4:26441777-26441796 | Msa0983340:intron | 35.0% | |
| TATCTTCCTTATCAGTGAAC+CGG | - | chr6_4:26441799-26441818 | None:intergenic | 35.0% | |
| ACTGATAAGGAAGATAGAGT+TGG | + | chr6_4:26441803-26441822 | Msa0983340:intron | 35.0% | |
| CTGATAAGGAAGATAGAGTT+GGG | + | chr6_4:26441804-26441823 | Msa0983340:intron | 35.0% | |
| TGATAAGGAAGATAGAGTTG+GGG | + | chr6_4:26441805-26441824 | Msa0983340:intron | 35.0% | |
| !!! | CCCCCGAAATTTTTTACATA+AGG | - | chr6_4:26441903-26441922 | None:intergenic | 35.0% |
| AAGTTAGAAAGCCGTATGAT+AGG | + | chr6_4:26441988-26442007 | Msa0983340:intron | 35.0% | |
| GAACACCAACACATAGAAAA+AGG | - | chr6_4:26442149-26442168 | None:intergenic | 35.0% | |
| ! | TAACAAGTCGAGTCTTATGT+CGG | - | chr6_4:26442179-26442198 | None:intergenic | 35.0% |
| !! | GACTTGTTAGATATTACGGA+GGG | + | chr6_4:26442190-26442209 | Msa0983340:CDS | 35.0% |
| AAGGAAATGGTAGAGAGATT+CGG | - | chr6_4:26442231-26442250 | None:intergenic | 35.0% | |
| !! | TGGCTACTAAGCTATTTCTT+TGG | - | chr6_4:26442332-26442351 | None:intergenic | 35.0% |
| CACACGATTATATAGCCAAA+GGG | - | chr6_4:26442394-26442413 | None:intergenic | 35.0% | |
| CTATATAATCGTGTGGTTTC+TGG | + | chr6_4:26442399-26442418 | Msa0983340:CDS | 35.0% | |
| GGAGAATTTATGGAGGAAAT+CGG | - | chr6_4:26442436-26442455 | None:intergenic | 35.0% | |
| CATTTGGATCGGAGAATTTA+TGG | - | chr6_4:26442446-26442465 | None:intergenic | 35.0% | |
| CATAAATTCTCCGATCCAAA+TGG | + | chr6_4:26442444-26442463 | Msa0983340:CDS | 35.0% | |
| ! | TATACCTTTTCTTGTTGGAG+GGG | + | chr6_4:26442485-26442504 | Msa0983340:CDS | 35.0% |
| ! | ATAGGTACTTTTCAATGCAG+CGG | - | chr6_4:26441767-26441786 | None:intergenic | 35.0% |
| AAGTACCTATGCACTATTTC+CGG | + | chr6_4:26441777-26441796 | Msa0983340:intron | 35.0% | |
| TATCTTCCTTATCAGTGAAC+CGG | - | chr6_4:26441799-26441818 | None:intergenic | 35.0% | |
| ACTGATAAGGAAGATAGAGT+TGG | + | chr6_4:26441803-26441822 | Msa0983340:intron | 35.0% | |
| CTGATAAGGAAGATAGAGTT+GGG | + | chr6_4:26441804-26441823 | Msa0983340:intron | 35.0% | |
| TGATAAGGAAGATAGAGTTG+GGG | + | chr6_4:26441805-26441824 | Msa0983340:intron | 35.0% | |
| !!! | CCCCCGAAATTTTTTACATA+AGG | - | chr6_4:26441903-26441922 | None:intergenic | 35.0% |
| AAGTTAGAAAGCCGTATGAT+AGG | + | chr6_4:26441988-26442007 | Msa0983340:intron | 35.0% | |
| GAACACCAACACATAGAAAA+AGG | - | chr6_4:26442149-26442168 | None:intergenic | 35.0% | |
| ! | TAACAAGTCGAGTCTTATGT+CGG | - | chr6_4:26442179-26442198 | None:intergenic | 35.0% |
| !! | GACTTGTTAGATATTACGGA+GGG | + | chr6_4:26442190-26442209 | Msa0983340:CDS | 35.0% |
| AAGGAAATGGTAGAGAGATT+CGG | - | chr6_4:26442231-26442250 | None:intergenic | 35.0% | |
| !! | TGGCTACTAAGCTATTTCTT+TGG | - | chr6_4:26442332-26442351 | None:intergenic | 35.0% |
| CACACGATTATATAGCCAAA+GGG | - | chr6_4:26442394-26442413 | None:intergenic | 35.0% | |
| CTATATAATCGTGTGGTTTC+TGG | + | chr6_4:26442399-26442418 | Msa0983340:CDS | 35.0% | |
| GGAGAATTTATGGAGGAAAT+CGG | - | chr6_4:26442436-26442455 | None:intergenic | 35.0% | |
| CATTTGGATCGGAGAATTTA+TGG | - | chr6_4:26442446-26442465 | None:intergenic | 35.0% | |
| CATAAATTCTCCGATCCAAA+TGG | + | chr6_4:26442444-26442463 | Msa0983340:CDS | 35.0% | |
| ! | TATACCTTTTCTTGTTGGAG+GGG | + | chr6_4:26442485-26442504 | Msa0983340:CDS | 35.0% |
| TTCCTTTATGAGGTCCTATC+GGG | - | chr6_4:26441665-26441684 | None:intergenic | 40.0% | |
| GTTCCTTTATGAGGTCCTAT+CGG | - | chr6_4:26441666-26441685 | None:intergenic | 40.0% | |
| GATAGGACCTCATAAAGGAA+CGG | + | chr6_4:26441665-26441684 | Msa0983340:CDS | 40.0% | |
| ATAGGACCTCATAAAGGAAC+GGG | + | chr6_4:26441666-26441685 | Msa0983340:CDS | 40.0% | |
| ! | TAGGTACTTTTCAATGCAGC+GGG | - | chr6_4:26441766-26441785 | None:intergenic | 40.0% |
| CTATTTCCGGTTCACTGATA+AGG | + | chr6_4:26441790-26441809 | Msa0983340:intron | 40.0% | |
| TGTGATACTCAAGTATGACC+CGG | + | chr6_4:26441841-26441860 | Msa0983340:intron | 40.0% | |
| ATAGTTAGCATGTATCTCCC+CGG | - | chr6_4:26441863-26441882 | None:intergenic | 40.0% | |
| GGGAGATACATGCTAACTAT+GGG | + | chr6_4:26441863-26441882 | Msa0983340:intron | 40.0% | |
| TTAGAAAGCCGTATGATAGG+CGG | + | chr6_4:26441991-26442010 | Msa0983340:intron | 40.0% | |
| GATAGTTACCGCCTATCATA+CGG | - | chr6_4:26442002-26442021 | None:intergenic | 40.0% | |
| TAGGCGGTAACTATCTTGTA+CGG | + | chr6_4:26442007-26442026 | Msa0983340:intron | 40.0% | |
| GGTAACTATCTTGTACGGTT+CGG | + | chr6_4:26442012-26442031 | Msa0983340:intron | 40.0% | |
| GTAACTATCTTGTACGGTTC+GGG | + | chr6_4:26442013-26442032 | Msa0983340:intron | 40.0% | |
| TAACTATCTTGTACGGTTCG+GGG | + | chr6_4:26442014-26442033 | Msa0983340:intron | 40.0% | |
| !! | TTTGGCTCTATCGAACATAC+AGG | + | chr6_4:26442071-26442090 | Msa0983340:intron | 40.0% |
| !! | TTGGCTCTATCGAACATACA+GGG | + | chr6_4:26442072-26442091 | Msa0983340:intron | 40.0% |
| CTATCGAACATACAGGGAAT+TGG | + | chr6_4:26442078-26442097 | Msa0983340:intron | 40.0% | |
| ATTCCACCGATGTTAAGTCA+TGG | + | chr6_4:26442108-26442127 | Msa0983340:CDS | 40.0% | |
| ACCAGTCCATGACTTAACAT+CGG | - | chr6_4:26442117-26442136 | None:intergenic | 40.0% | |
| ACACATAGAAAAAGGGCTGA+AGG | - | chr6_4:26442141-26442160 | None:intergenic | 40.0% | |
| ! | TCAGCCCTTTTTCTATGTGT+TGG | + | chr6_4:26442141-26442160 | Msa0983340:CDS | 40.0% |
| !! | CGACTTGTTAGATATTACGG+AGG | + | chr6_4:26442189-26442208 | Msa0983340:CDS | 40.0% |
| CAAAGTGGAAGAGAAGGAAA+TGG | - | chr6_4:26442244-26442263 | None:intergenic | 40.0% | |
| CATTTCCTTCTCTTCCACTT+TGG | + | chr6_4:26442242-26442261 | Msa0983340:CDS | 40.0% | |
| TGAACTCATATTGGCCAAAG+TGG | - | chr6_4:26442259-26442278 | None:intergenic | 40.0% | |
| AGTACCAGGTGAACTCATAT+TGG | - | chr6_4:26442268-26442287 | None:intergenic | 40.0% | |
| CCACACGATTATATAGCCAA+AGG | - | chr6_4:26442395-26442414 | None:intergenic | 40.0% | |
| CCTTTGGCTATATAATCGTG+TGG | + | chr6_4:26442392-26442411 | Msa0983340:CDS | 40.0% | |
| TTGGATCGGAGAATTTATGG+AGG | - | chr6_4:26442443-26442462 | None:intergenic | 40.0% | |
| ! | AACTTCTCTGCCATTTGGAT+CGG | - | chr6_4:26442457-26442476 | None:intergenic | 40.0% |
| ATGGAAACTTCTCTGCCATT+TGG | - | chr6_4:26442462-26442481 | None:intergenic | 40.0% | |
| TTCCTTTATGAGGTCCTATC+GGG | - | chr6_4:26441665-26441684 | None:intergenic | 40.0% | |
| GTTCCTTTATGAGGTCCTAT+CGG | - | chr6_4:26441666-26441685 | None:intergenic | 40.0% | |
| GATAGGACCTCATAAAGGAA+CGG | + | chr6_4:26441665-26441684 | Msa0983340:CDS | 40.0% | |
| ATAGGACCTCATAAAGGAAC+GGG | + | chr6_4:26441666-26441685 | Msa0983340:CDS | 40.0% | |
| ! | TAGGTACTTTTCAATGCAGC+GGG | - | chr6_4:26441766-26441785 | None:intergenic | 40.0% |
| CTATTTCCGGTTCACTGATA+AGG | + | chr6_4:26441790-26441809 | Msa0983340:intron | 40.0% | |
| TGTGATACTCAAGTATGACC+CGG | + | chr6_4:26441841-26441860 | Msa0983340:intron | 40.0% | |
| ATAGTTAGCATGTATCTCCC+CGG | - | chr6_4:26441863-26441882 | None:intergenic | 40.0% | |
| GGGAGATACATGCTAACTAT+GGG | + | chr6_4:26441863-26441882 | Msa0983340:intron | 40.0% | |
| TTAGAAAGCCGTATGATAGG+CGG | + | chr6_4:26441991-26442010 | Msa0983340:intron | 40.0% | |
| GATAGTTACCGCCTATCATA+CGG | - | chr6_4:26442002-26442021 | None:intergenic | 40.0% | |
| TAGGCGGTAACTATCTTGTA+CGG | + | chr6_4:26442007-26442026 | Msa0983340:intron | 40.0% | |
| GGTAACTATCTTGTACGGTT+CGG | + | chr6_4:26442012-26442031 | Msa0983340:intron | 40.0% | |
| GTAACTATCTTGTACGGTTC+GGG | + | chr6_4:26442013-26442032 | Msa0983340:intron | 40.0% | |
| TAACTATCTTGTACGGTTCG+GGG | + | chr6_4:26442014-26442033 | Msa0983340:intron | 40.0% | |
| !! | TTTGGCTCTATCGAACATAC+AGG | + | chr6_4:26442071-26442090 | Msa0983340:intron | 40.0% |
| !! | TTGGCTCTATCGAACATACA+GGG | + | chr6_4:26442072-26442091 | Msa0983340:intron | 40.0% |
| CTATCGAACATACAGGGAAT+TGG | + | chr6_4:26442078-26442097 | Msa0983340:intron | 40.0% | |
| ATTCCACCGATGTTAAGTCA+TGG | + | chr6_4:26442108-26442127 | Msa0983340:CDS | 40.0% | |
| ACCAGTCCATGACTTAACAT+CGG | - | chr6_4:26442117-26442136 | None:intergenic | 40.0% | |
| ACACATAGAAAAAGGGCTGA+AGG | - | chr6_4:26442141-26442160 | None:intergenic | 40.0% | |
| ! | TCAGCCCTTTTTCTATGTGT+TGG | + | chr6_4:26442141-26442160 | Msa0983340:CDS | 40.0% |
| !! | CGACTTGTTAGATATTACGG+AGG | + | chr6_4:26442189-26442208 | Msa0983340:CDS | 40.0% |
| CAAAGTGGAAGAGAAGGAAA+TGG | - | chr6_4:26442244-26442263 | None:intergenic | 40.0% | |
| CATTTCCTTCTCTTCCACTT+TGG | + | chr6_4:26442242-26442261 | Msa0983340:CDS | 40.0% | |
| TGAACTCATATTGGCCAAAG+TGG | - | chr6_4:26442259-26442278 | None:intergenic | 40.0% | |
| AGTACCAGGTGAACTCATAT+TGG | - | chr6_4:26442268-26442287 | None:intergenic | 40.0% | |
| CCACACGATTATATAGCCAA+AGG | - | chr6_4:26442395-26442414 | None:intergenic | 40.0% | |
| CCTTTGGCTATATAATCGTG+TGG | + | chr6_4:26442392-26442411 | Msa0983340:CDS | 40.0% | |
| TTGGATCGGAGAATTTATGG+AGG | - | chr6_4:26442443-26442462 | None:intergenic | 40.0% | |
| ! | AACTTCTCTGCCATTTGGAT+CGG | - | chr6_4:26442457-26442476 | None:intergenic | 40.0% |
| ATGGAAACTTCTCTGCCATT+TGG | - | chr6_4:26442462-26442481 | None:intergenic | 40.0% | |
| TTATGAGGTCCTATCGGGAT+AGG | - | chr6_4:26441660-26441679 | None:intergenic | 45.0% | |
| ATCCCGATAGGACCTCATAA+AGG | + | chr6_4:26441660-26441679 | Msa0983340:CDS | 45.0% | |
| ! | AGGTACTTTTCAATGCAGCG+GGG | - | chr6_4:26441765-26441784 | None:intergenic | 45.0% |
| GTGAACCGGAAATAGTGCAT+AGG | - | chr6_4:26441785-26441804 | None:intergenic | 45.0% | |
| TAAGGAAGATAGAGTTGGGG+TGG | + | chr6_4:26441808-26441827 | Msa0983340:intron | 45.0% | |
| AAGGAAGATAGAGTTGGGGT+GGG | + | chr6_4:26441809-26441828 | Msa0983340:intron | 45.0% | |
| GTGATACTCAAGTATGACCC+GGG | + | chr6_4:26441842-26441861 | Msa0983340:intron | 45.0% | |
| TGATACTCAAGTATGACCCG+GGG | + | chr6_4:26441843-26441862 | Msa0983340:intron | 45.0% | |
| TAGTTAGCATGTATCTCCCC+GGG | - | chr6_4:26441862-26441881 | None:intergenic | 45.0% | |
| GGGGAGATACATGCTAACTA+TGG | + | chr6_4:26441862-26441881 | Msa0983340:intron | 45.0% | |
| GCTAACTATGGGTAGAAAGC+AGG | + | chr6_4:26441874-26441893 | Msa0983340:intron | 45.0% | |
| ! | AACTATCTTGTACGGTTCGG+GGG | + | chr6_4:26442015-26442034 | Msa0983340:intron | 45.0% |
| TCGAACATACAGGGAATTGG+AGG | + | chr6_4:26442081-26442100 | Msa0983340:intron | 45.0% | |
| AGTCCATGACTTAACATCGG+TGG | - | chr6_4:26442114-26442133 | None:intergenic | 45.0% | |
| ACCGATGTTAAGTCATGGAC+TGG | + | chr6_4:26442113-26442132 | Msa0983340:CDS | 45.0% | |
| AATGGTAGAGAGATTCGGCA+TGG | - | chr6_4:26442226-26442245 | None:intergenic | 45.0% | |
| ATTGGCCAAAGTGGAAGAGA+AGG | - | chr6_4:26442250-26442269 | None:intergenic | 45.0% | |
| TTGGCCAATATGAGTTCACC+TGG | + | chr6_4:26442261-26442280 | Msa0983340:CDS | 45.0% | |
| ! | CCTGGTACTAGCAGCTTTAT+CGG | + | chr6_4:26442279-26442298 | Msa0983340:CDS | 45.0% |
| ! | CTGGTACTAGCAGCTTTATC+GGG | + | chr6_4:26442280-26442299 | Msa0983340:CDS | 45.0% |
| ! | TGGTACTAGCAGCTTTATCG+GGG | + | chr6_4:26442281-26442300 | Msa0983340:CDS | 45.0% |
| TGGAAAGCTCCTACTGAGAT+GGG | - | chr6_4:26442312-26442331 | None:intergenic | 45.0% | |
| TTGGAAAGCTCCTACTGAGA+TGG | - | chr6_4:26442313-26442332 | None:intergenic | 45.0% | |
| TTATGAGGTCCTATCGGGAT+AGG | - | chr6_4:26441660-26441679 | None:intergenic | 45.0% | |
| ATCCCGATAGGACCTCATAA+AGG | + | chr6_4:26441660-26441679 | Msa0983340:CDS | 45.0% | |
| ! | AGGTACTTTTCAATGCAGCG+GGG | - | chr6_4:26441765-26441784 | None:intergenic | 45.0% |
| GTGAACCGGAAATAGTGCAT+AGG | - | chr6_4:26441785-26441804 | None:intergenic | 45.0% | |
| TAAGGAAGATAGAGTTGGGG+TGG | + | chr6_4:26441808-26441827 | Msa0983340:intron | 45.0% | |
| AAGGAAGATAGAGTTGGGGT+GGG | + | chr6_4:26441809-26441828 | Msa0983340:intron | 45.0% | |
| GTGATACTCAAGTATGACCC+GGG | + | chr6_4:26441842-26441861 | Msa0983340:intron | 45.0% | |
| TGATACTCAAGTATGACCCG+GGG | + | chr6_4:26441843-26441862 | Msa0983340:intron | 45.0% | |
| TAGTTAGCATGTATCTCCCC+GGG | - | chr6_4:26441862-26441881 | None:intergenic | 45.0% | |
| GGGGAGATACATGCTAACTA+TGG | + | chr6_4:26441862-26441881 | Msa0983340:intron | 45.0% | |
| GCTAACTATGGGTAGAAAGC+AGG | + | chr6_4:26441874-26441893 | Msa0983340:intron | 45.0% | |
| ! | AACTATCTTGTACGGTTCGG+GGG | + | chr6_4:26442015-26442034 | Msa0983340:intron | 45.0% |
| TCGAACATACAGGGAATTGG+AGG | + | chr6_4:26442081-26442100 | Msa0983340:intron | 45.0% | |
| AGTCCATGACTTAACATCGG+TGG | - | chr6_4:26442114-26442133 | None:intergenic | 45.0% | |
| ACCGATGTTAAGTCATGGAC+TGG | + | chr6_4:26442113-26442132 | Msa0983340:CDS | 45.0% | |
| AATGGTAGAGAGATTCGGCA+TGG | - | chr6_4:26442226-26442245 | None:intergenic | 45.0% | |
| ATTGGCCAAAGTGGAAGAGA+AGG | - | chr6_4:26442250-26442269 | None:intergenic | 45.0% | |
| TTGGCCAATATGAGTTCACC+TGG | + | chr6_4:26442261-26442280 | Msa0983340:CDS | 45.0% | |
| ! | CCTGGTACTAGCAGCTTTAT+CGG | + | chr6_4:26442279-26442298 | Msa0983340:CDS | 45.0% |
| ! | CTGGTACTAGCAGCTTTATC+GGG | + | chr6_4:26442280-26442299 | Msa0983340:CDS | 45.0% |
| ! | TGGTACTAGCAGCTTTATCG+GGG | + | chr6_4:26442281-26442300 | Msa0983340:CDS | 45.0% |
| TGGAAAGCTCCTACTGAGAT+GGG | - | chr6_4:26442312-26442331 | None:intergenic | 45.0% | |
| TTGGAAAGCTCCTACTGAGA+TGG | - | chr6_4:26442313-26442332 | None:intergenic | 45.0% | |
| ACAGCTCCCGTTCCTTTATG+AGG | - | chr6_4:26441675-26441694 | None:intergenic | 50.0% | |
| AAGGAACGGGAGCTGTTGAT+AGG | + | chr6_4:26441679-26441698 | Msa0983340:CDS | 50.0% | |
| TTCCATATTGCCGAGCCGAA+GGG | + | chr6_4:26441702-26441721 | Msa0983340:CDS | 50.0% | |
| AGGAAGATAGAGTTGGGGTG+GGG | + | chr6_4:26441810-26441829 | Msa0983340:intron | 50.0% | |
| ACTACCATCGATCGACAGAG+CGG | + | chr6_4:26441944-26441963 | Msa0983340:intron | 50.0% | |
| ! | ACTATCTTGTACGGTTCGGG+GGG | + | chr6_4:26442016-26442035 | Msa0983340:intron | 50.0% |
| CAAAGATTCCCCCCACTGAT+CGG | - | chr6_4:26442055-26442074 | None:intergenic | 50.0% | |
| CCGATAAAGCTGCTAGTACC+AGG | - | chr6_4:26442282-26442301 | None:intergenic | 50.0% | |
| GGGGAATTTCCCATCTCAGT+AGG | + | chr6_4:26442300-26442319 | Msa0983340:CDS | 50.0% | |
| TAGCCACATTAGCAGCGCTT+GGG | + | chr6_4:26442346-26442365 | Msa0983340:CDS | 50.0% | |
| ! | GCAGCGCTTGGGATGATTTT+AGG | + | chr6_4:26442357-26442376 | Msa0983340:CDS | 50.0% |
| ! | GCTTGGGATGATTTTAGGCG+CGG | + | chr6_4:26442362-26442381 | Msa0983340:CDS | 50.0% |
| ACAGCTCCCGTTCCTTTATG+AGG | - | chr6_4:26441675-26441694 | None:intergenic | 50.0% | |
| AAGGAACGGGAGCTGTTGAT+AGG | + | chr6_4:26441679-26441698 | Msa0983340:CDS | 50.0% | |
| TTCCATATTGCCGAGCCGAA+GGG | + | chr6_4:26441702-26441721 | Msa0983340:CDS | 50.0% | |
| AGGAAGATAGAGTTGGGGTG+GGG | + | chr6_4:26441810-26441829 | Msa0983340:intron | 50.0% | |
| ACTACCATCGATCGACAGAG+CGG | + | chr6_4:26441944-26441963 | Msa0983340:intron | 50.0% | |
| ! | ACTATCTTGTACGGTTCGGG+GGG | + | chr6_4:26442016-26442035 | Msa0983340:intron | 50.0% |
| CAAAGATTCCCCCCACTGAT+CGG | - | chr6_4:26442055-26442074 | None:intergenic | 50.0% | |
| CCGATAAAGCTGCTAGTACC+AGG | - | chr6_4:26442282-26442301 | None:intergenic | 50.0% | |
| GGGGAATTTCCCATCTCAGT+AGG | + | chr6_4:26442300-26442319 | Msa0983340:CDS | 50.0% | |
| TAGCCACATTAGCAGCGCTT+GGG | + | chr6_4:26442346-26442365 | Msa0983340:CDS | 50.0% | |
| ! | GCAGCGCTTGGGATGATTTT+AGG | + | chr6_4:26442357-26442376 | Msa0983340:CDS | 50.0% |
| ! | GCTTGGGATGATTTTAGGCG+CGG | + | chr6_4:26442362-26442381 | Msa0983340:CDS | 50.0% |
| GAGGTCCTATCGGGATAGGT+AGG | - | chr6_4:26441656-26441675 | None:intergenic | 55.0% | |
| GTTCCATATTGCCGAGCCGA+AGG | + | chr6_4:26441701-26441720 | Msa0983340:CDS | 55.0% | |
| !! | CGTACAGAAGTGCTGCCCTT+CGG | - | chr6_4:26441720-26441739 | None:intergenic | 55.0% |
| GGAAGATAGAGTTGGGGTGG+GGG | + | chr6_4:26441811-26441830 | Msa0983340:intron | 55.0% | |
| ! | TGTACGGTTCGGGGGGTAAT+CGG | + | chr6_4:26442023-26442042 | Msa0983340:intron | 55.0% |
| AATCGGCGTACTCCGATCAG+TGG | + | chr6_4:26442040-26442059 | Msa0983340:intron | 55.0% | |
| ATCGGCGTACTCCGATCAGT+GGG | + | chr6_4:26442041-26442060 | Msa0983340:intron | 55.0% | |
| CGATCAGTGGGGGGAATCTT+TGG | + | chr6_4:26442053-26442072 | Msa0983340:intron | 55.0% | |
| GTAGCCACATTAGCAGCGCT+TGG | + | chr6_4:26442345-26442364 | Msa0983340:CDS | 55.0% | |
| ! | CATCCCAAGCGCTGCTAATG+TGG | - | chr6_4:26442352-26442371 | None:intergenic | 55.0% |
| GTCGCCCCTCCAACAAGAAA+AGG | - | chr6_4:26442492-26442511 | None:intergenic | 55.0% | |
| GAGGTCCTATCGGGATAGGT+AGG | - | chr6_4:26441656-26441675 | None:intergenic | 55.0% | |
| GTTCCATATTGCCGAGCCGA+AGG | + | chr6_4:26441701-26441720 | Msa0983340:CDS | 55.0% | |
| !! | CGTACAGAAGTGCTGCCCTT+CGG | - | chr6_4:26441720-26441739 | None:intergenic | 55.0% |
| GGAAGATAGAGTTGGGGTGG+GGG | + | chr6_4:26441811-26441830 | Msa0983340:intron | 55.0% | |
| ! | TGTACGGTTCGGGGGGTAAT+CGG | + | chr6_4:26442023-26442042 | Msa0983340:intron | 55.0% |
| AATCGGCGTACTCCGATCAG+TGG | + | chr6_4:26442040-26442059 | Msa0983340:intron | 55.0% | |
| ATCGGCGTACTCCGATCAGT+GGG | + | chr6_4:26442041-26442060 | Msa0983340:intron | 55.0% | |
| CGATCAGTGGGGGGAATCTT+TGG | + | chr6_4:26442053-26442072 | Msa0983340:intron | 55.0% | |
| GTAGCCACATTAGCAGCGCT+TGG | + | chr6_4:26442345-26442364 | Msa0983340:CDS | 55.0% | |
| ! | CATCCCAAGCGCTGCTAATG+TGG | - | chr6_4:26442352-26442371 | None:intergenic | 55.0% |
| GTCGCCCCTCCAACAAGAAA+AGG | - | chr6_4:26442492-26442511 | None:intergenic | 55.0% | |
| CTGGGCCTACCTATCCCGAT+AGG | + | chr6_4:26441648-26441667 | Msa0983340:CDS | 60.0% | |
| !! | TGCCCTTCGGCTCGGCAATA+TGG | - | chr6_4:26441707-26441726 | None:intergenic | 60.0% |
| !! | AGAAGTGCTGCCCTTCGGCT+CGG | - | chr6_4:26441715-26441734 | None:intergenic | 60.0% |
| CGTTCCGCTCTGTCGATCGA+TGG | - | chr6_4:26441951-26441970 | None:intergenic | 60.0% | |
| TCGGCGTACTCCGATCAGTG+GGG | + | chr6_4:26442042-26442061 | Msa0983340:intron | 60.0% | |
| TAGGCGCGGCGTATTCCCTT+TGG | + | chr6_4:26442376-26442395 | Msa0983340:CDS | 60.0% | |
| CTGGGCCTACCTATCCCGAT+AGG | + | chr6_4:26441648-26441667 | Msa0983340:CDS | 60.0% | |
| !! | TGCCCTTCGGCTCGGCAATA+TGG | - | chr6_4:26441707-26441726 | None:intergenic | 60.0% |
| !! | AGAAGTGCTGCCCTTCGGCT+CGG | - | chr6_4:26441715-26441734 | None:intergenic | 60.0% |
| CGTTCCGCTCTGTCGATCGA+TGG | - | chr6_4:26441951-26441970 | None:intergenic | 60.0% | |
| TCGGCGTACTCCGATCAGTG+GGG | + | chr6_4:26442042-26442061 | Msa0983340:intron | 60.0% | |
| TAGGCGCGGCGTATTCCCTT+TGG | + | chr6_4:26442376-26442395 | Msa0983340:CDS | 60.0% | |
| ATGGAGGGAGGGGGAAGGCT+TGG | + | chr6_4:26441624-26441643 | Msa0983340:CDS | 65.0% | |
| TGGAGGGAGGGGGAAGGCTT+GGG | + | chr6_4:26441625-26441644 | Msa0983340:CDS | 65.0% | |
| CGGCGTACTCCGATCAGTGG+GGG | + | chr6_4:26442043-26442062 | Msa0983340:intron | 65.0% | |
| GGCGTACTCCGATCAGTGGG+GGG | + | chr6_4:26442044-26442063 | Msa0983340:intron | 65.0% | |
| ATGGAGGGAGGGGGAAGGCT+TGG | + | chr6_4:26441624-26441643 | Msa0983340:CDS | 65.0% | |
| TGGAGGGAGGGGGAAGGCTT+GGG | + | chr6_4:26441625-26441644 | Msa0983340:CDS | 65.0% | |
| CGGCGTACTCCGATCAGTGG+GGG | + | chr6_4:26442043-26442062 | Msa0983340:intron | 65.0% | |
| GGCGTACTCCGATCAGTGGG+GGG | + | chr6_4:26442044-26442063 | Msa0983340:intron | 65.0% | |
| GGAGGGGGAAGGCTTGGGCT+GGG | + | chr6_4:26441630-26441649 | Msa0983340:CDS | 70.0% | |
| GGAGGGGGAAGGCTTGGGCT+GGG | + | chr6_4:26441630-26441649 | Msa0983340:CDS | 70.0% | |
| GGGAGGGGGAAGGCTTGGGC+TGG | + | chr6_4:26441629-26441648 | Msa0983340:CDS | 75.0% | |
| GGGAGGGGGAAGGCTTGGGC+TGG | + | chr6_4:26441629-26441648 | Msa0983340:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 26441624 | 26442521 | 26441624 | ID=Msa0983340;Name=Msa0983340 |
| chr6_4 | mRNA | 26441624 | 26442521 | 26441624 | ID=Msa0983340-mRNA-1;Parent=Msa0983340;Name=Msa0983340-mRNA-1;_AED=0.44;_eAED=0.45;_QI=0|0|0|1|0|0|2|0|189 |
| chr6_4 | exon | 26441624 | 26441778 | 26441624 | ID=Msa0983340-mRNA-1:exon:7480;Parent=Msa0983340-mRNA-1 |
| chr6_4 | exon | 26442107 | 26442521 | 26442107 | ID=Msa0983340-mRNA-1:exon:7481;Parent=Msa0983340-mRNA-1 |
| chr6_4 | CDS | 26441624 | 26441778 | 26441624 | ID=Msa0983340-mRNA-1:cds;Parent=Msa0983340-mRNA-1 |
| chr6_4 | CDS | 26442107 | 26442521 | 26442107 | ID=Msa0983340-mRNA-1:cds;Parent=Msa0983340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
