Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391990 | KEH16847.1 | 97.409 | 193 | 1 | 1 | 1 | 189 | 1 | 193 | 5.88e-128 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391990 | sp|Q04050|NU4M_BRACM | 94.737 | 133 | 7 | 0 | 52 | 184 | 334 | 466 | 1.59e-80 | 250 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391990 | A0A072THH4 | 97.409 | 193 | 1 | 1 | 1 | 189 | 1 | 193 | 2.81e-128 | 374 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1391990 | Msa1453860 | 0.861600 | 9.154510e-64 | -8.615850e-47 |
| Msa0983340 | Msa1391990 | 0.948300 | 1.239030e-106 | -8.615850e-47 |
| Msa0920020 | Msa1391990 | 0.928924 | 1.449435e-92 | -8.615850e-47 |
| Msa0920060 | Msa1391990 | 0.802617 | 5.153502e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391990 | MtrunA17_MTg0491601 | 100.000 | 134 | 0 | 0 | 56 | 189 | 1 | 134 | 1.37e-93 | 268 |
| Msa1391990 | MtrunA17_Chr7g0264331 | 82.353 | 51 | 9 | 0 | 12 | 62 | 12 | 62 | 3.97e-23 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391990 | ATMG00580.1 | 93.985 | 133 | 8 | 0 | 52 | 184 | 334 | 466 | 3.37e-80 | 247 |
Find 62 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATATAATCGTGTGGTTTC+TGG | 0.115346 | tig0021468:-42272 | Msa1391990:CDS |
| GAACACCAACACATAGAAAA+AGG | 0.215780 | tig0021468:+42525 | None:intergenic |
| CATTTGGATCGGAGAATTTA+TGG | 0.225223 | tig0021468:+42228 | None:intergenic |
| TGGCTACTAAGCTATTTCTT+TGG | 0.294828 | tig0021468:+42342 | None:intergenic |
| AACAAGAAAAGGTATAAATA+TGG | 0.320507 | tig0021468:+42193 | None:intergenic |
| CCTGGTACTAGCAGCTTTAT+CGG | 0.335139 | tig0021468:-42392 | Msa1391990:CDS |
| ATGGAAACTTCTCTGCCATT+TGG | 0.362258 | tig0021468:+42212 | None:intergenic |
| ACTCGACTTGTTAGATATTA+CGG | 0.365139 | tig0021468:-42485 | Msa1391990:CDS |
| AGAGGGTCTTATGGAGGGAG+GGG | 0.398258 | tig0021468:-43057 | None:intergenic |
| TGCCCTTCGGCTCGGCAATA+TGG | 0.398365 | tig0021468:+42967 | None:intergenic |
| CTGGTACTAGCAGCTTTATC+GGG | 0.404966 | tig0021468:-42391 | Msa1391990:CDS |
| AAAGAGGGTCTTATGGAGGG+AGG | 0.428219 | tig0021468:-43059 | None:intergenic |
| AGTACCAGGTGAACTCATAT+TGG | 0.455273 | tig0021468:+42406 | None:intergenic |
| GGAGAATTTATGGAGGAAAT+CGG | 0.458292 | tig0021468:+42238 | None:intergenic |
| TTCCTTTATGAGGTCCTATC+GGG | 0.461257 | tig0021468:+43009 | None:intergenic |
| ACAGCTCCCGTTCCTTTATG+AGG | 0.463512 | tig0021468:+42999 | None:intergenic |
| TAGGCGCGGCGTATTCCCTT+TGG | 0.468628 | tig0021468:-42295 | Msa1391990:CDS |
| CATTTCCTTCTCTTCCACTT+TGG | 0.469790 | tig0021468:-42429 | Msa1391990:CDS |
| AAGGAACGGGAGCTGTTGAT+AGG | 0.472146 | tig0021468:-42992 | Msa1391990:CDS |
| AAGGAAATGGTAGAGAGATT+CGG | 0.474409 | tig0021468:+42443 | None:intergenic |
| GTTCCTTTATGAGGTCCTAT+CGG | 0.485880 | tig0021468:+43008 | None:intergenic |
| CCGATAAAGCTGCTAGTACC+AGG | 0.489275 | tig0021468:+42392 | None:intergenic |
| GTAGCCACATTAGCAGCGCT+TGG | 0.489321 | tig0021468:-42326 | Msa1391990:CDS |
| CATAAATTCTCCGATCCAAA+TGG | 0.490582 | tig0021468:-42227 | Msa1391990:CDS |
| ATAGGACCTCATAAAGGAAC+GGG | 0.491037 | tig0021468:-43005 | Msa1391990:CDS |
| TTGGAAAGCTCCTACTGAGA+TGG | 0.492362 | tig0021468:+42361 | None:intergenic |
| GAGGGTCTTATGGAGGGAGG+GGG | 0.497592 | tig0021468:-43056 | None:intergenic |
| AACTTCTCTGCCATTTGGAT+CGG | 0.499588 | tig0021468:+42217 | None:intergenic |
| ATCCCGATAGGACCTCATAA+AGG | 0.502596 | tig0021468:-43011 | Msa1391990:CDS |
| TAGCCACATTAGCAGCGCTT+GGG | 0.509701 | tig0021468:-42325 | Msa1391990:CDS |
| CATCCCAAGCGCTGCTAATG+TGG | 0.509853 | tig0021468:+42322 | None:intergenic |
| GTCGCCCCTCCAACAAGAAA+AGG | 0.514206 | tig0021468:+42182 | None:intergenic |
| AAGAGGGTCTTATGGAGGGA+GGG | 0.525502 | tig0021468:-43058 | None:intergenic |
| ACCGATGTTAAGTCATGGAC+TGG | 0.526914 | tig0021468:-42558 | Msa1391990:CDS |
| TGGAAAGCTCCTACTGAGAT+GGG | 0.532780 | tig0021468:+42362 | None:intergenic |
| GAGAAAGAGGGTCTTATGGA+GGG | 0.534497 | tig0021468:-43062 | None:intergenic |
| GTTCCATATTGCCGAGCCGA+AGG | 0.537919 | tig0021468:-42970 | Msa1391990:CDS |
| CACACGATTATATAGCCAAA+GGG | 0.551184 | tig0021468:+42280 | None:intergenic |
| TTATGAGGTCCTATCGGGAT+AGG | 0.555137 | tig0021468:+43014 | None:intergenic |
| ATTGGCCAAAGTGGAAGAGA+AGG | 0.560732 | tig0021468:+42424 | None:intergenic |
| CAAAGTGGAAGAGAAGGAAA+TGG | 0.570201 | tig0021468:+42430 | None:intergenic |
| CGTACAGAAGTGCTGCCCTT+CGG | 0.574948 | tig0021468:+42954 | None:intergenic |
| TGAACTCATATTGGCCAAAG+TGG | 0.575500 | tig0021468:+42415 | None:intergenic |
| CCTTTGGCTATATAATCGTG+TGG | 0.579601 | tig0021468:-42279 | Msa1391990:CDS |
| TTCTTTGGTAGTTCAACGGA+CGG | 0.589775 | tig0021468:+42160 | None:intergenic |
| TTCCATATTGCCGAGCCGAA+GGG | 0.591830 | tig0021468:-42969 | Msa1391990:CDS |
| GAGGTCCTATCGGGATAGGT+AGG | 0.596204 | tig0021468:+43018 | None:intergenic |
| AGAAGTGCTGCCCTTCGGCT+CGG | 0.601630 | tig0021468:+42959 | None:intergenic |
| TTGGCCAATATGAGTTCACC+TGG | 0.605951 | tig0021468:-42410 | Msa1391990:CDS |
| GGGGAATTTCCCATCTCAGT+AGG | 0.607104 | tig0021468:-42371 | Msa1391990:CDS |
| CCACACGATTATATAGCCAA+AGG | 0.624841 | tig0021468:+42279 | None:intergenic |
| GATAGGACCTCATAAAGGAA+CGG | 0.630915 | tig0021468:-43006 | Msa1391990:CDS |
| TAACAAGTCGAGTCTTATGT+CGG | 0.641549 | tig0021468:+42495 | None:intergenic |
| CTGGGCCTACCTATCCCGAT+AGG | 0.650197 | tig0021468:-43023 | Msa1391990:CDS |
| AGTCCATGACTTAACATCGG+TGG | 0.656046 | tig0021468:+42560 | None:intergenic |
| TGGTACTAGCAGCTTTATCG+GGG | 0.656393 | tig0021468:-42390 | Msa1391990:CDS |
| GACTTGTTAGATATTACGGA+GGG | 0.657876 | tig0021468:-42481 | Msa1391990:CDS |
| ATTCCACCGATGTTAAGTCA+TGG | 0.659227 | tig0021468:-42563 | Msa1391990:CDS |
| CGACTTGTTAGATATTACGG+AGG | 0.668703 | tig0021468:-42482 | Msa1391990:CDS |
| AATGGTAGAGAGATTCGGCA+TGG | 0.678484 | tig0021468:+42448 | None:intergenic |
| TTGGATCGGAGAATTTATGG+AGG | 0.680463 | tig0021468:+42231 | None:intergenic |
| ACCAGTCCATGACTTAACAT+CGG | 0.686650 | tig0021468:+42557 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACCCTTATGTAAAAAATTT+CGG | - | tig0021468:42445-42464 | Msa1391990:CDS | 20.0% |
| !!! | AACAAGAAAAGGTATAAATA+TGG | + | tig0021468:43029-43048 | None:intergenic | 20.0% |
| !!! | ATATTTATACCTTTTCTTGT+TGG | - | tig0021468:43028-43047 | Msa1391990:CDS | 20.0% |
| !! | AACCCTTATGTAAAAAATTT+CGG | - | tig0021468:42445-42464 | Msa1391990:CDS | 20.0% |
| !!! | AACAAGAAAAGGTATAAATA+TGG | + | tig0021468:43029-43048 | None:intergenic | 20.0% |
| !!! | ATATTTATACCTTTTCTTGT+TGG | - | tig0021468:43028-43047 | Msa1391990:CDS | 20.0% |
| ! | ACCCTTATGTAAAAAATTTC+GGG | - | tig0021468:42446-42465 | Msa1391990:CDS | 25.0% |
| !!! | CTAACTTCACTTTTTTTTTC+TGG | + | tig0021468:42523-42542 | None:intergenic | 25.0% |
| ! | ACCCTTATGTAAAAAATTTC+GGG | - | tig0021468:42446-42465 | Msa1391990:CDS | 25.0% |
| !!! | CTAACTTCACTTTTTTTTTC+TGG | + | tig0021468:42523-42542 | None:intergenic | 25.0% |
| !!! | CCCCGAAATTTTTTACATAA+GGG | + | tig0021468:42450-42469 | None:intergenic | 30.0% |
| CCCTTATGTAAAAAATTTCG+GGG | - | tig0021468:42447-42466 | Msa1391990:CDS | 30.0% | |
| CCTTATGTAAAAAATTTCGG+GGG | - | tig0021468:42448-42467 | Msa1391990:CDS | 30.0% | |
| CTTATGTAAAAAATTTCGGG+GGG | - | tig0021468:42449-42468 | Msa1391990:CDS | 30.0% | |
| AACACCAACACATAGAAAAA+GGG | + | tig0021468:42696-42715 | None:intergenic | 30.0% | |
| !! | ACTCGACTTGTTAGATATTA+CGG | - | tig0021468:42734-42753 | Msa1391990:intron | 30.0% |
| ! | TTTATACCTTTTCTTGTTGG+AGG | - | tig0021468:43031-43050 | Msa1391990:CDS | 30.0% |
| ! | TTATACCTTTTCTTGTTGGA+GGG | - | tig0021468:43032-43051 | Msa1391990:CDS | 30.0% |
| !!! | CCCCGAAATTTTTTACATAA+GGG | + | tig0021468:42450-42469 | None:intergenic | 30.0% |
| CCCTTATGTAAAAAATTTCG+GGG | - | tig0021468:42447-42466 | Msa1391990:CDS | 30.0% | |
| CCTTATGTAAAAAATTTCGG+GGG | - | tig0021468:42448-42467 | Msa1391990:CDS | 30.0% | |
| CTTATGTAAAAAATTTCGGG+GGG | - | tig0021468:42449-42468 | Msa1391990:CDS | 30.0% | |
| AACACCAACACATAGAAAAA+GGG | + | tig0021468:42696-42715 | None:intergenic | 30.0% | |
| !! | ACTCGACTTGTTAGATATTA+CGG | - | tig0021468:42734-42753 | Msa1391990:intron | 30.0% |
| ! | TTTATACCTTTTCTTGTTGG+AGG | - | tig0021468:43031-43050 | Msa1391990:CDS | 30.0% |
| ! | TTATACCTTTTCTTGTTGGA+GGG | - | tig0021468:43032-43051 | Msa1391990:CDS | 30.0% |
| ! | ATAGGTACTTTTCAATGCAG+CGG | + | tig0021468:42315-42334 | None:intergenic | 35.0% |
| AAGTACCTATGCACTATTTC+CGG | - | tig0021468:42325-42344 | Msa1391990:CDS | 35.0% | |
| TATCTTCCTTATCAGTGAAC+CGG | + | tig0021468:42347-42366 | None:intergenic | 35.0% | |
| ACTGATAAGGAAGATAGAGT+TGG | - | tig0021468:42351-42370 | Msa1391990:CDS | 35.0% | |
| CTGATAAGGAAGATAGAGTT+GGG | - | tig0021468:42352-42371 | Msa1391990:CDS | 35.0% | |
| TGATAAGGAAGATAGAGTTG+GGG | - | tig0021468:42353-42372 | Msa1391990:CDS | 35.0% | |
| !!! | CCCCCGAAATTTTTTACATA+AGG | + | tig0021468:42451-42470 | None:intergenic | 35.0% |
| AAGTTAGAAAGCCGTATGAT+AGG | - | tig0021468:42536-42555 | Msa1391990:CDS | 35.0% | |
| GAACACCAACACATAGAAAA+AGG | + | tig0021468:42697-42716 | None:intergenic | 35.0% | |
| ! | TAACAAGTCGAGTCTTATGT+CGG | + | tig0021468:42727-42746 | None:intergenic | 35.0% |
| !! | GACTTGTTAGATATTACGGA+GGG | - | tig0021468:42738-42757 | Msa1391990:intron | 35.0% |
| AAGGAAATGGTAGAGAGATT+CGG | + | tig0021468:42779-42798 | None:intergenic | 35.0% | |
| !! | TGGCTACTAAGCTATTTCTT+TGG | + | tig0021468:42880-42899 | None:intergenic | 35.0% |
| CACACGATTATATAGCCAAA+GGG | + | tig0021468:42942-42961 | None:intergenic | 35.0% | |
| CTATATAATCGTGTGGTTTC+TGG | - | tig0021468:42947-42966 | Msa1391990:CDS | 35.0% | |
| GGAGAATTTATGGAGGAAAT+CGG | + | tig0021468:42984-43003 | None:intergenic | 35.0% | |
| CATTTGGATCGGAGAATTTA+TGG | + | tig0021468:42994-43013 | None:intergenic | 35.0% | |
| CATAAATTCTCCGATCCAAA+TGG | - | tig0021468:42992-43011 | Msa1391990:CDS | 35.0% | |
| ! | TATACCTTTTCTTGTTGGAG+GGG | - | tig0021468:43033-43052 | Msa1391990:CDS | 35.0% |
| ! | ATAGGTACTTTTCAATGCAG+CGG | + | tig0021468:42315-42334 | None:intergenic | 35.0% |
| AAGTACCTATGCACTATTTC+CGG | - | tig0021468:42325-42344 | Msa1391990:CDS | 35.0% | |
| TATCTTCCTTATCAGTGAAC+CGG | + | tig0021468:42347-42366 | None:intergenic | 35.0% | |
| ACTGATAAGGAAGATAGAGT+TGG | - | tig0021468:42351-42370 | Msa1391990:CDS | 35.0% | |
| CTGATAAGGAAGATAGAGTT+GGG | - | tig0021468:42352-42371 | Msa1391990:CDS | 35.0% | |
| TGATAAGGAAGATAGAGTTG+GGG | - | tig0021468:42353-42372 | Msa1391990:CDS | 35.0% | |
| !!! | CCCCCGAAATTTTTTACATA+AGG | + | tig0021468:42451-42470 | None:intergenic | 35.0% |
| AAGTTAGAAAGCCGTATGAT+AGG | - | tig0021468:42536-42555 | Msa1391990:CDS | 35.0% | |
| GAACACCAACACATAGAAAA+AGG | + | tig0021468:42697-42716 | None:intergenic | 35.0% | |
| ! | TAACAAGTCGAGTCTTATGT+CGG | + | tig0021468:42727-42746 | None:intergenic | 35.0% |
| !! | GACTTGTTAGATATTACGGA+GGG | - | tig0021468:42738-42757 | Msa1391990:intron | 35.0% |
| AAGGAAATGGTAGAGAGATT+CGG | + | tig0021468:42779-42798 | None:intergenic | 35.0% | |
| !! | TGGCTACTAAGCTATTTCTT+TGG | + | tig0021468:42880-42899 | None:intergenic | 35.0% |
| CACACGATTATATAGCCAAA+GGG | + | tig0021468:42942-42961 | None:intergenic | 35.0% | |
| CTATATAATCGTGTGGTTTC+TGG | - | tig0021468:42947-42966 | Msa1391990:CDS | 35.0% | |
| GGAGAATTTATGGAGGAAAT+CGG | + | tig0021468:42984-43003 | None:intergenic | 35.0% | |
| CATTTGGATCGGAGAATTTA+TGG | + | tig0021468:42994-43013 | None:intergenic | 35.0% | |
| CATAAATTCTCCGATCCAAA+TGG | - | tig0021468:42992-43011 | Msa1391990:CDS | 35.0% | |
| ! | TATACCTTTTCTTGTTGGAG+GGG | - | tig0021468:43033-43052 | Msa1391990:CDS | 35.0% |
| TTCCTTTATGAGGTCCTATC+GGG | + | tig0021468:42213-42232 | None:intergenic | 40.0% | |
| GTTCCTTTATGAGGTCCTAT+CGG | + | tig0021468:42214-42233 | None:intergenic | 40.0% | |
| GATAGGACCTCATAAAGGAA+CGG | - | tig0021468:42213-42232 | Msa1391990:CDS | 40.0% | |
| ATAGGACCTCATAAAGGAAC+GGG | - | tig0021468:42214-42233 | Msa1391990:CDS | 40.0% | |
| ! | TAGGTACTTTTCAATGCAGC+GGG | + | tig0021468:42314-42333 | None:intergenic | 40.0% |
| CTATTTCCGGTTCACTGATA+AGG | - | tig0021468:42338-42357 | Msa1391990:CDS | 40.0% | |
| TGTGATACTCAAGTATGACC+CGG | - | tig0021468:42389-42408 | Msa1391990:CDS | 40.0% | |
| ATAGTTAGCATGTATCTCCC+CGG | + | tig0021468:42411-42430 | None:intergenic | 40.0% | |
| GGGAGATACATGCTAACTAT+GGG | - | tig0021468:42411-42430 | Msa1391990:CDS | 40.0% | |
| TTAGAAAGCCGTATGATAGG+CGG | - | tig0021468:42539-42558 | Msa1391990:CDS | 40.0% | |
| GATAGTTACCGCCTATCATA+CGG | + | tig0021468:42550-42569 | None:intergenic | 40.0% | |
| TAGGCGGTAACTATCTTGTA+CGG | - | tig0021468:42555-42574 | Msa1391990:CDS | 40.0% | |
| GGTAACTATCTTGTACGGTT+CGG | - | tig0021468:42560-42579 | Msa1391990:CDS | 40.0% | |
| GTAACTATCTTGTACGGTTC+GGG | - | tig0021468:42561-42580 | Msa1391990:CDS | 40.0% | |
| TAACTATCTTGTACGGTTCG+GGG | - | tig0021468:42562-42581 | Msa1391990:CDS | 40.0% | |
| !! | TTTGGCTCTATCGAACATAC+AGG | - | tig0021468:42619-42638 | Msa1391990:intron | 40.0% |
| !! | TTGGCTCTATCGAACATACA+GGG | - | tig0021468:42620-42639 | Msa1391990:intron | 40.0% |
| CTATCGAACATACAGGGAAT+TGG | - | tig0021468:42626-42645 | Msa1391990:intron | 40.0% | |
| ATTCCACCGATGTTAAGTCA+TGG | - | tig0021468:42656-42675 | Msa1391990:intron | 40.0% | |
| ACCAGTCCATGACTTAACAT+CGG | + | tig0021468:42665-42684 | None:intergenic | 40.0% | |
| ACACATAGAAAAAGGGCTGA+AGG | + | tig0021468:42689-42708 | None:intergenic | 40.0% | |
| ! | TCAGCCCTTTTTCTATGTGT+TGG | - | tig0021468:42689-42708 | Msa1391990:intron | 40.0% |
| !! | CGACTTGTTAGATATTACGG+AGG | - | tig0021468:42737-42756 | Msa1391990:intron | 40.0% |
| CAAAGTGGAAGAGAAGGAAA+TGG | + | tig0021468:42792-42811 | None:intergenic | 40.0% | |
| CATTTCCTTCTCTTCCACTT+TGG | - | tig0021468:42790-42809 | Msa1391990:intron | 40.0% | |
| TGAACTCATATTGGCCAAAG+TGG | + | tig0021468:42807-42826 | None:intergenic | 40.0% | |
| AGTACCAGGTGAACTCATAT+TGG | + | tig0021468:42816-42835 | None:intergenic | 40.0% | |
| CCACACGATTATATAGCCAA+AGG | + | tig0021468:42943-42962 | None:intergenic | 40.0% | |
| CCTTTGGCTATATAATCGTG+TGG | - | tig0021468:42940-42959 | Msa1391990:CDS | 40.0% | |
| TTGGATCGGAGAATTTATGG+AGG | + | tig0021468:42991-43010 | None:intergenic | 40.0% | |
| ! | AACTTCTCTGCCATTTGGAT+CGG | + | tig0021468:43005-43024 | None:intergenic | 40.0% |
| ATGGAAACTTCTCTGCCATT+TGG | + | tig0021468:43010-43029 | None:intergenic | 40.0% | |
| TTCCTTTATGAGGTCCTATC+GGG | + | tig0021468:42213-42232 | None:intergenic | 40.0% | |
| GTTCCTTTATGAGGTCCTAT+CGG | + | tig0021468:42214-42233 | None:intergenic | 40.0% | |
| GATAGGACCTCATAAAGGAA+CGG | - | tig0021468:42213-42232 | Msa1391990:CDS | 40.0% | |
| ATAGGACCTCATAAAGGAAC+GGG | - | tig0021468:42214-42233 | Msa1391990:CDS | 40.0% | |
| ! | TAGGTACTTTTCAATGCAGC+GGG | + | tig0021468:42314-42333 | None:intergenic | 40.0% |
| CTATTTCCGGTTCACTGATA+AGG | - | tig0021468:42338-42357 | Msa1391990:CDS | 40.0% | |
| TGTGATACTCAAGTATGACC+CGG | - | tig0021468:42389-42408 | Msa1391990:CDS | 40.0% | |
| ATAGTTAGCATGTATCTCCC+CGG | + | tig0021468:42411-42430 | None:intergenic | 40.0% | |
| GGGAGATACATGCTAACTAT+GGG | - | tig0021468:42411-42430 | Msa1391990:CDS | 40.0% | |
| TTAGAAAGCCGTATGATAGG+CGG | - | tig0021468:42539-42558 | Msa1391990:CDS | 40.0% | |
| GATAGTTACCGCCTATCATA+CGG | + | tig0021468:42550-42569 | None:intergenic | 40.0% | |
| TAGGCGGTAACTATCTTGTA+CGG | - | tig0021468:42555-42574 | Msa1391990:CDS | 40.0% | |
| GGTAACTATCTTGTACGGTT+CGG | - | tig0021468:42560-42579 | Msa1391990:CDS | 40.0% | |
| GTAACTATCTTGTACGGTTC+GGG | - | tig0021468:42561-42580 | Msa1391990:CDS | 40.0% | |
| TAACTATCTTGTACGGTTCG+GGG | - | tig0021468:42562-42581 | Msa1391990:CDS | 40.0% | |
| !! | TTTGGCTCTATCGAACATAC+AGG | - | tig0021468:42619-42638 | Msa1391990:intron | 40.0% |
| !! | TTGGCTCTATCGAACATACA+GGG | - | tig0021468:42620-42639 | Msa1391990:intron | 40.0% |
| CTATCGAACATACAGGGAAT+TGG | - | tig0021468:42626-42645 | Msa1391990:intron | 40.0% | |
| ATTCCACCGATGTTAAGTCA+TGG | - | tig0021468:42656-42675 | Msa1391990:intron | 40.0% | |
| ACCAGTCCATGACTTAACAT+CGG | + | tig0021468:42665-42684 | None:intergenic | 40.0% | |
| ACACATAGAAAAAGGGCTGA+AGG | + | tig0021468:42689-42708 | None:intergenic | 40.0% | |
| ! | TCAGCCCTTTTTCTATGTGT+TGG | - | tig0021468:42689-42708 | Msa1391990:intron | 40.0% |
| !! | CGACTTGTTAGATATTACGG+AGG | - | tig0021468:42737-42756 | Msa1391990:intron | 40.0% |
| CAAAGTGGAAGAGAAGGAAA+TGG | + | tig0021468:42792-42811 | None:intergenic | 40.0% | |
| CATTTCCTTCTCTTCCACTT+TGG | - | tig0021468:42790-42809 | Msa1391990:intron | 40.0% | |
| TGAACTCATATTGGCCAAAG+TGG | + | tig0021468:42807-42826 | None:intergenic | 40.0% | |
| AGTACCAGGTGAACTCATAT+TGG | + | tig0021468:42816-42835 | None:intergenic | 40.0% | |
| CCACACGATTATATAGCCAA+AGG | + | tig0021468:42943-42962 | None:intergenic | 40.0% | |
| CCTTTGGCTATATAATCGTG+TGG | - | tig0021468:42940-42959 | Msa1391990:CDS | 40.0% | |
| TTGGATCGGAGAATTTATGG+AGG | + | tig0021468:42991-43010 | None:intergenic | 40.0% | |
| ! | AACTTCTCTGCCATTTGGAT+CGG | + | tig0021468:43005-43024 | None:intergenic | 40.0% |
| ATGGAAACTTCTCTGCCATT+TGG | + | tig0021468:43010-43029 | None:intergenic | 40.0% | |
| TTATGAGGTCCTATCGGGAT+AGG | + | tig0021468:42208-42227 | None:intergenic | 45.0% | |
| ATCCCGATAGGACCTCATAA+AGG | - | tig0021468:42208-42227 | Msa1391990:CDS | 45.0% | |
| ! | AGGTACTTTTCAATGCAGCG+GGG | + | tig0021468:42313-42332 | None:intergenic | 45.0% |
| GTGAACCGGAAATAGTGCAT+AGG | + | tig0021468:42333-42352 | None:intergenic | 45.0% | |
| TAAGGAAGATAGAGTTGGGG+TGG | - | tig0021468:42356-42375 | Msa1391990:CDS | 45.0% | |
| AAGGAAGATAGAGTTGGGGT+GGG | - | tig0021468:42357-42376 | Msa1391990:CDS | 45.0% | |
| GTGATACTCAAGTATGACCC+GGG | - | tig0021468:42390-42409 | Msa1391990:CDS | 45.0% | |
| TGATACTCAAGTATGACCCG+GGG | - | tig0021468:42391-42410 | Msa1391990:CDS | 45.0% | |
| TAGTTAGCATGTATCTCCCC+GGG | + | tig0021468:42410-42429 | None:intergenic | 45.0% | |
| GGGGAGATACATGCTAACTA+TGG | - | tig0021468:42410-42429 | Msa1391990:CDS | 45.0% | |
| GCTAACTATGGGTAGAAAGC+AGG | - | tig0021468:42422-42441 | Msa1391990:CDS | 45.0% | |
| ! | AACTATCTTGTACGGTTCGG+GGG | - | tig0021468:42563-42582 | Msa1391990:CDS | 45.0% |
| TCGAACATACAGGGAATTGG+AGG | - | tig0021468:42629-42648 | Msa1391990:intron | 45.0% | |
| AGTCCATGACTTAACATCGG+TGG | + | tig0021468:42662-42681 | None:intergenic | 45.0% | |
| ACCGATGTTAAGTCATGGAC+TGG | - | tig0021468:42661-42680 | Msa1391990:intron | 45.0% | |
| AATGGTAGAGAGATTCGGCA+TGG | + | tig0021468:42774-42793 | None:intergenic | 45.0% | |
| ATTGGCCAAAGTGGAAGAGA+AGG | + | tig0021468:42798-42817 | None:intergenic | 45.0% | |
| TTGGCCAATATGAGTTCACC+TGG | - | tig0021468:42809-42828 | Msa1391990:intron | 45.0% | |
| ! | CCTGGTACTAGCAGCTTTAT+CGG | - | tig0021468:42827-42846 | Msa1391990:intron | 45.0% |
| ! | CTGGTACTAGCAGCTTTATC+GGG | - | tig0021468:42828-42847 | Msa1391990:intron | 45.0% |
| ! | TGGTACTAGCAGCTTTATCG+GGG | - | tig0021468:42829-42848 | Msa1391990:intron | 45.0% |
| TGGAAAGCTCCTACTGAGAT+GGG | + | tig0021468:42860-42879 | None:intergenic | 45.0% | |
| TTGGAAAGCTCCTACTGAGA+TGG | + | tig0021468:42861-42880 | None:intergenic | 45.0% | |
| TTATGAGGTCCTATCGGGAT+AGG | + | tig0021468:42208-42227 | None:intergenic | 45.0% | |
| ATCCCGATAGGACCTCATAA+AGG | - | tig0021468:42208-42227 | Msa1391990:CDS | 45.0% | |
| ! | AGGTACTTTTCAATGCAGCG+GGG | + | tig0021468:42313-42332 | None:intergenic | 45.0% |
| GTGAACCGGAAATAGTGCAT+AGG | + | tig0021468:42333-42352 | None:intergenic | 45.0% | |
| TAAGGAAGATAGAGTTGGGG+TGG | - | tig0021468:42356-42375 | Msa1391990:CDS | 45.0% | |
| AAGGAAGATAGAGTTGGGGT+GGG | - | tig0021468:42357-42376 | Msa1391990:CDS | 45.0% | |
| GTGATACTCAAGTATGACCC+GGG | - | tig0021468:42390-42409 | Msa1391990:CDS | 45.0% | |
| TGATACTCAAGTATGACCCG+GGG | - | tig0021468:42391-42410 | Msa1391990:CDS | 45.0% | |
| TAGTTAGCATGTATCTCCCC+GGG | + | tig0021468:42410-42429 | None:intergenic | 45.0% | |
| GGGGAGATACATGCTAACTA+TGG | - | tig0021468:42410-42429 | Msa1391990:CDS | 45.0% | |
| GCTAACTATGGGTAGAAAGC+AGG | - | tig0021468:42422-42441 | Msa1391990:CDS | 45.0% | |
| ! | AACTATCTTGTACGGTTCGG+GGG | - | tig0021468:42563-42582 | Msa1391990:CDS | 45.0% |
| TCGAACATACAGGGAATTGG+AGG | - | tig0021468:42629-42648 | Msa1391990:intron | 45.0% | |
| AGTCCATGACTTAACATCGG+TGG | + | tig0021468:42662-42681 | None:intergenic | 45.0% | |
| ACCGATGTTAAGTCATGGAC+TGG | - | tig0021468:42661-42680 | Msa1391990:intron | 45.0% | |
| AATGGTAGAGAGATTCGGCA+TGG | + | tig0021468:42774-42793 | None:intergenic | 45.0% | |
| ATTGGCCAAAGTGGAAGAGA+AGG | + | tig0021468:42798-42817 | None:intergenic | 45.0% | |
| TTGGCCAATATGAGTTCACC+TGG | - | tig0021468:42809-42828 | Msa1391990:intron | 45.0% | |
| ! | CCTGGTACTAGCAGCTTTAT+CGG | - | tig0021468:42827-42846 | Msa1391990:intron | 45.0% |
| ! | CTGGTACTAGCAGCTTTATC+GGG | - | tig0021468:42828-42847 | Msa1391990:intron | 45.0% |
| ! | TGGTACTAGCAGCTTTATCG+GGG | - | tig0021468:42829-42848 | Msa1391990:intron | 45.0% |
| TGGAAAGCTCCTACTGAGAT+GGG | + | tig0021468:42860-42879 | None:intergenic | 45.0% | |
| TTGGAAAGCTCCTACTGAGA+TGG | + | tig0021468:42861-42880 | None:intergenic | 45.0% | |
| ACAGCTCCCGTTCCTTTATG+AGG | + | tig0021468:42223-42242 | None:intergenic | 50.0% | |
| AAGGAACGGGAGCTGTTGAT+AGG | - | tig0021468:42227-42246 | Msa1391990:CDS | 50.0% | |
| TTCCATATTGCCGAGCCGAA+GGG | - | tig0021468:42250-42269 | Msa1391990:CDS | 50.0% | |
| AGGAAGATAGAGTTGGGGTG+GGG | - | tig0021468:42358-42377 | Msa1391990:CDS | 50.0% | |
| ACTACCATCGATCGACAGAG+CGG | - | tig0021468:42492-42511 | Msa1391990:CDS | 50.0% | |
| ! | ACTATCTTGTACGGTTCGGG+GGG | - | tig0021468:42564-42583 | Msa1391990:CDS | 50.0% |
| CAAAGATTCCCCCCACTGAT+CGG | + | tig0021468:42603-42622 | None:intergenic | 50.0% | |
| CCGATAAAGCTGCTAGTACC+AGG | + | tig0021468:42830-42849 | None:intergenic | 50.0% | |
| GGGGAATTTCCCATCTCAGT+AGG | - | tig0021468:42848-42867 | Msa1391990:intron | 50.0% | |
| TAGCCACATTAGCAGCGCTT+GGG | - | tig0021468:42894-42913 | Msa1391990:intron | 50.0% | |
| ! | GCAGCGCTTGGGATGATTTT+AGG | - | tig0021468:42905-42924 | Msa1391990:intron | 50.0% |
| ! | GCTTGGGATGATTTTAGGCG+CGG | - | tig0021468:42910-42929 | Msa1391990:intron | 50.0% |
| ACAGCTCCCGTTCCTTTATG+AGG | + | tig0021468:42223-42242 | None:intergenic | 50.0% | |
| AAGGAACGGGAGCTGTTGAT+AGG | - | tig0021468:42227-42246 | Msa1391990:CDS | 50.0% | |
| TTCCATATTGCCGAGCCGAA+GGG | - | tig0021468:42250-42269 | Msa1391990:CDS | 50.0% | |
| AGGAAGATAGAGTTGGGGTG+GGG | - | tig0021468:42358-42377 | Msa1391990:CDS | 50.0% | |
| ACTACCATCGATCGACAGAG+CGG | - | tig0021468:42492-42511 | Msa1391990:CDS | 50.0% | |
| ! | ACTATCTTGTACGGTTCGGG+GGG | - | tig0021468:42564-42583 | Msa1391990:CDS | 50.0% |
| CAAAGATTCCCCCCACTGAT+CGG | + | tig0021468:42603-42622 | None:intergenic | 50.0% | |
| CCGATAAAGCTGCTAGTACC+AGG | + | tig0021468:42830-42849 | None:intergenic | 50.0% | |
| GGGGAATTTCCCATCTCAGT+AGG | - | tig0021468:42848-42867 | Msa1391990:intron | 50.0% | |
| TAGCCACATTAGCAGCGCTT+GGG | - | tig0021468:42894-42913 | Msa1391990:intron | 50.0% | |
| ! | GCAGCGCTTGGGATGATTTT+AGG | - | tig0021468:42905-42924 | Msa1391990:intron | 50.0% |
| ! | GCTTGGGATGATTTTAGGCG+CGG | - | tig0021468:42910-42929 | Msa1391990:intron | 50.0% |
| GAGGTCCTATCGGGATAGGT+AGG | + | tig0021468:42204-42223 | None:intergenic | 55.0% | |
| GTTCCATATTGCCGAGCCGA+AGG | - | tig0021468:42249-42268 | Msa1391990:CDS | 55.0% | |
| !! | CGTACAGAAGTGCTGCCCTT+CGG | + | tig0021468:42268-42287 | None:intergenic | 55.0% |
| GGAAGATAGAGTTGGGGTGG+GGG | - | tig0021468:42359-42378 | Msa1391990:CDS | 55.0% | |
| ! | TGTACGGTTCGGGGGGTAAT+CGG | - | tig0021468:42571-42590 | Msa1391990:intron | 55.0% |
| AATCGGCGTACTCCGATCAG+TGG | - | tig0021468:42588-42607 | Msa1391990:intron | 55.0% | |
| ATCGGCGTACTCCGATCAGT+GGG | - | tig0021468:42589-42608 | Msa1391990:intron | 55.0% | |
| CGATCAGTGGGGGGAATCTT+TGG | - | tig0021468:42601-42620 | Msa1391990:intron | 55.0% | |
| GTAGCCACATTAGCAGCGCT+TGG | - | tig0021468:42893-42912 | Msa1391990:intron | 55.0% | |
| ! | CATCCCAAGCGCTGCTAATG+TGG | + | tig0021468:42900-42919 | None:intergenic | 55.0% |
| GTCGCCCCTCCAACAAGAAA+AGG | + | tig0021468:43040-43059 | None:intergenic | 55.0% | |
| GAGGTCCTATCGGGATAGGT+AGG | + | tig0021468:42204-42223 | None:intergenic | 55.0% | |
| GTTCCATATTGCCGAGCCGA+AGG | - | tig0021468:42249-42268 | Msa1391990:CDS | 55.0% | |
| !! | CGTACAGAAGTGCTGCCCTT+CGG | + | tig0021468:42268-42287 | None:intergenic | 55.0% |
| GGAAGATAGAGTTGGGGTGG+GGG | - | tig0021468:42359-42378 | Msa1391990:CDS | 55.0% | |
| ! | TGTACGGTTCGGGGGGTAAT+CGG | - | tig0021468:42571-42590 | Msa1391990:intron | 55.0% |
| AATCGGCGTACTCCGATCAG+TGG | - | tig0021468:42588-42607 | Msa1391990:intron | 55.0% | |
| ATCGGCGTACTCCGATCAGT+GGG | - | tig0021468:42589-42608 | Msa1391990:intron | 55.0% | |
| CGATCAGTGGGGGGAATCTT+TGG | - | tig0021468:42601-42620 | Msa1391990:intron | 55.0% | |
| GTAGCCACATTAGCAGCGCT+TGG | - | tig0021468:42893-42912 | Msa1391990:intron | 55.0% | |
| ! | CATCCCAAGCGCTGCTAATG+TGG | + | tig0021468:42900-42919 | None:intergenic | 55.0% |
| GTCGCCCCTCCAACAAGAAA+AGG | + | tig0021468:43040-43059 | None:intergenic | 55.0% | |
| CTGGGCCTACCTATCCCGAT+AGG | - | tig0021468:42196-42215 | Msa1391990:CDS | 60.0% | |
| !! | TGCCCTTCGGCTCGGCAATA+TGG | + | tig0021468:42255-42274 | None:intergenic | 60.0% |
| !! | AGAAGTGCTGCCCTTCGGCT+CGG | + | tig0021468:42263-42282 | None:intergenic | 60.0% |
| CGTTCCGCTCTGTCGATCGA+TGG | + | tig0021468:42499-42518 | None:intergenic | 60.0% | |
| TCGGCGTACTCCGATCAGTG+GGG | - | tig0021468:42590-42609 | Msa1391990:intron | 60.0% | |
| TAGGCGCGGCGTATTCCCTT+TGG | - | tig0021468:42924-42943 | Msa1391990:CDS | 60.0% | |
| CTGGGCCTACCTATCCCGAT+AGG | - | tig0021468:42196-42215 | Msa1391990:CDS | 60.0% | |
| !! | TGCCCTTCGGCTCGGCAATA+TGG | + | tig0021468:42255-42274 | None:intergenic | 60.0% |
| !! | AGAAGTGCTGCCCTTCGGCT+CGG | + | tig0021468:42263-42282 | None:intergenic | 60.0% |
| CGTTCCGCTCTGTCGATCGA+TGG | + | tig0021468:42499-42518 | None:intergenic | 60.0% | |
| TCGGCGTACTCCGATCAGTG+GGG | - | tig0021468:42590-42609 | Msa1391990:intron | 60.0% | |
| TAGGCGCGGCGTATTCCCTT+TGG | - | tig0021468:42924-42943 | Msa1391990:CDS | 60.0% | |
| ATGGAGGGAGGGGGAAGGCT+TGG | - | tig0021468:42172-42191 | Msa1391990:CDS | 65.0% | |
| TGGAGGGAGGGGGAAGGCTT+GGG | - | tig0021468:42173-42192 | Msa1391990:CDS | 65.0% | |
| CGGCGTACTCCGATCAGTGG+GGG | - | tig0021468:42591-42610 | Msa1391990:intron | 65.0% | |
| GGCGTACTCCGATCAGTGGG+GGG | - | tig0021468:42592-42611 | Msa1391990:intron | 65.0% | |
| ATGGAGGGAGGGGGAAGGCT+TGG | - | tig0021468:42172-42191 | Msa1391990:CDS | 65.0% | |
| TGGAGGGAGGGGGAAGGCTT+GGG | - | tig0021468:42173-42192 | Msa1391990:CDS | 65.0% | |
| CGGCGTACTCCGATCAGTGG+GGG | - | tig0021468:42591-42610 | Msa1391990:intron | 65.0% | |
| GGCGTACTCCGATCAGTGGG+GGG | - | tig0021468:42592-42611 | Msa1391990:intron | 65.0% | |
| GGAGGGGGAAGGCTTGGGCT+GGG | - | tig0021468:42178-42197 | Msa1391990:CDS | 70.0% | |
| GGAGGGGGAAGGCTTGGGCT+GGG | - | tig0021468:42178-42197 | Msa1391990:CDS | 70.0% | |
| GGGAGGGGGAAGGCTTGGGC+TGG | - | tig0021468:42177-42196 | Msa1391990:CDS | 75.0% | |
| GGGAGGGGGAAGGCTTGGGC+TGG | - | tig0021468:42177-42196 | Msa1391990:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021468 | gene | 42172 | 43069 | 42172 | ID=Msa1391990;Name=Msa1391990 |
| tig0021468 | mRNA | 42172 | 43069 | 42172 | ID=Msa1391990-mRNA-1;Parent=Msa1391990;Name=Msa1391990-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|0|0|2|0|189 |
| tig0021468 | exon | 42915 | 43069 | 42915 | ID=Msa1391990-mRNA-1:exon:13019;Parent=Msa1391990-mRNA-1 |
| tig0021468 | exon | 42172 | 42586 | 42172 | ID=Msa1391990-mRNA-1:exon:13018;Parent=Msa1391990-mRNA-1 |
| tig0021468 | CDS | 42915 | 43069 | 42915 | ID=Msa1391990-mRNA-1:cds;Parent=Msa1391990-mRNA-1 |
| tig0021468 | CDS | 42172 | 42586 | 42172 | ID=Msa1391990-mRNA-1:cds;Parent=Msa1391990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
