Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920020 | KEH16847.1 | 96.373 | 193 | 3 | 1 | 1 | 189 | 1 | 193 | 8.13e-127 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920020 | sp|Q04050|NU4M_BRACM | 94.737 | 133 | 7 | 0 | 52 | 184 | 334 | 466 | 1.52e-80 | 250 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0920020 | Msa0920060 | 0.826723 | 2.319214e-54 | -8.615850e-47 |
| Msa0920020 | Msa0983300 | 0.822227 | 2.651757e-53 | -8.615850e-47 |
| Msa0920020 | Msa0983340 | 0.910997 | 1.000653e-82 | -8.615850e-47 |
| Msa0920020 | Msa0983460 | 0.816610 | 5.060407e-52 | -8.615850e-47 |
| Msa0920020 | Msa1391990 | 0.928924 | 1.449435e-92 | -8.615850e-47 |
| Msa0920020 | Msa1392030 | 0.830261 | 3.244691e-55 | -8.615850e-47 |
| Msa0920020 | Msa1392120 | 0.812478 | 4.155906e-51 | -8.615850e-47 |
| Msa0920020 | Msa1453860 | 0.876786 | 1.058009e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920020 | MtrunA17_MTg0491601 | 100.000 | 134 | 0 | 0 | 56 | 189 | 1 | 134 | 1.36e-93 | 268 |
| Msa0920020 | MtrunA17_Chr7g0264331 | 78.431 | 51 | 11 | 0 | 12 | 62 | 12 | 62 | 4.49e-22 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920020 | ATMG00580.1 | 93.985 | 133 | 8 | 0 | 52 | 184 | 334 | 466 | 3.09e-80 | 247 |
Find 59 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATATAATCGTGTGGTTTC+TGG | 0.115346 | 6_2:-53401735 | Msa0920020:CDS |
| GAACACCAACACATAGAAAA+AGG | 0.215780 | 6_2:+53401988 | None:intergenic |
| CATTTGGATCGGAGAATTTA+TGG | 0.225223 | 6_2:+53401691 | None:intergenic |
| TGGCTACTAAGCTATTTCTT+TGG | 0.294828 | 6_2:+53401805 | None:intergenic |
| AACAAGAAAAGGTATAAATA+TGG | 0.320507 | 6_2:+53401656 | None:intergenic |
| CCTGGTACTAGCAGCTTTAT+CGG | 0.335139 | 6_2:-53401855 | Msa0920020:CDS |
| ATGGAAACTTCTCTGCCATT+TGG | 0.362258 | 6_2:+53401675 | None:intergenic |
| ACTCGACTTGTTAGATATTA+CGG | 0.365139 | 6_2:-53401948 | Msa0920020:CDS |
| AGAGGGTCTTATGGAGGGAG+GGG | 0.398258 | 6_2:-53402520 | None:intergenic |
| CTGGTACTAGCAGCTTTATC+GGG | 0.404966 | 6_2:-53401854 | Msa0920020:CDS |
| AAAGAGGGTCTTATGGAGGG+AGG | 0.428219 | 6_2:-53402522 | None:intergenic |
| AGTACCAGGTGAACTCATAT+TGG | 0.455273 | 6_2:+53401869 | None:intergenic |
| GGAGAATTTATGGAGGAAAT+CGG | 0.458292 | 6_2:+53401701 | None:intergenic |
| TTCCTTTATGAGGTCCTATC+GGG | 0.461257 | 6_2:+53402472 | None:intergenic |
| ACAGCTCCCGTTCCTTTATG+AGG | 0.463512 | 6_2:+53402462 | None:intergenic |
| TAGGCGCGGCGTATTCCCTT+TGG | 0.468628 | 6_2:-53401758 | Msa0920020:CDS |
| CATTTCCTTCTCTTCCACTT+TGG | 0.469790 | 6_2:-53401892 | Msa0920020:CDS |
| AAGGAAATGGTAGAGAGATT+CGG | 0.474409 | 6_2:+53401906 | None:intergenic |
| GTTCCTTTATGAGGTCCTAT+CGG | 0.485880 | 6_2:+53402471 | None:intergenic |
| CCGATAAAGCTGCTAGTACC+AGG | 0.489275 | 6_2:+53401855 | None:intergenic |
| GTAGCCACATTAGCAGCGCT+TGG | 0.489321 | 6_2:-53401789 | Msa0920020:CDS |
| CATAAATTCTCCGATCCAAA+TGG | 0.490582 | 6_2:-53401690 | Msa0920020:CDS |
| ATAGGACCTCATAAAGGAAC+GGG | 0.491037 | 6_2:-53402468 | Msa0920020:CDS |
| TTGGAAAGCTCCTACTGAGA+TGG | 0.492362 | 6_2:+53401824 | None:intergenic |
| GAGGGTCTTATGGAGGGAGG+GGG | 0.497592 | 6_2:-53402519 | None:intergenic |
| AACTTCTCTGCCATTTGGAT+CGG | 0.499588 | 6_2:+53401680 | None:intergenic |
| ATCCCGATAGGACCTCATAA+AGG | 0.502596 | 6_2:-53402474 | Msa0920020:CDS |
| TAGCCACATTAGCAGCGCTT+GGG | 0.509701 | 6_2:-53401788 | Msa0920020:CDS |
| CATCCCAAGCGCTGCTAATG+TGG | 0.509853 | 6_2:+53401785 | None:intergenic |
| GTCGCCCCTCCAACAAGAAA+AGG | 0.514206 | 6_2:+53401645 | None:intergenic |
| AAGAGGGTCTTATGGAGGGA+GGG | 0.525502 | 6_2:-53402521 | None:intergenic |
| ACCGATGTTAAGTCATGGAC+TGG | 0.526914 | 6_2:-53402021 | Msa0920020:CDS |
| CGTACAGAAGTGCTGCCATT+CGG | 0.529637 | 6_2:+53402417 | None:intergenic |
| TGGAAAGCTCCTACTGAGAT+GGG | 0.532780 | 6_2:+53401825 | None:intergenic |
| GAGAAAGAGGGTCTTATGGA+GGG | 0.534497 | 6_2:-53402525 | None:intergenic |
| CACACGATTATATAGCCAAA+GGG | 0.551184 | 6_2:+53401743 | None:intergenic |
| TTATGAGGTCCTATCGGGAT+AGG | 0.555137 | 6_2:+53402477 | None:intergenic |
| ATTGGCCAAAGTGGAAGAGA+AGG | 0.560732 | 6_2:+53401887 | None:intergenic |
| CAAAGTGGAAGAGAAGGAAA+TGG | 0.570201 | 6_2:+53401893 | None:intergenic |
| TGAACTCATATTGGCCAAAG+TGG | 0.575500 | 6_2:+53401878 | None:intergenic |
| AGAAGTGCTGCCATTCGGCT+CGG | 0.577689 | 6_2:+53402422 | None:intergenic |
| CCTTTGGCTATATAATCGTG+TGG | 0.579601 | 6_2:-53401742 | Msa0920020:CDS |
| TTCTTTGGTAGTTCAACGGA+CGG | 0.589775 | 6_2:+53401623 | None:intergenic |
| GAGGTCCTATCGGGATAGGT+AGG | 0.596204 | 6_2:+53402481 | None:intergenic |
| TTGGCCAATATGAGTTCACC+TGG | 0.605951 | 6_2:-53401873 | Msa0920020:CDS |
| TTCCATATTGCCGAGCCGAA+TGG | 0.606313 | 6_2:-53402432 | Msa0920020:CDS |
| GGGGAATTTCCCATCTCAGT+AGG | 0.607104 | 6_2:-53401834 | Msa0920020:CDS |
| CCACACGATTATATAGCCAA+AGG | 0.624841 | 6_2:+53401742 | None:intergenic |
| GATAGGACCTCATAAAGGAA+CGG | 0.630915 | 6_2:-53402469 | Msa0920020:CDS |
| TAACAAGTCGAGTCTTATGT+CGG | 0.641549 | 6_2:+53401958 | None:intergenic |
| CTGGGCCTACCTATCCCGAT+AGG | 0.650197 | 6_2:-53402486 | Msa0920020:CDS |
| AGTCCATGACTTAACATCGG+TGG | 0.656046 | 6_2:+53402023 | None:intergenic |
| TGGTACTAGCAGCTTTATCG+GGG | 0.656393 | 6_2:-53401853 | Msa0920020:CDS |
| GACTTGTTAGATATTACGGA+GGG | 0.657876 | 6_2:-53401944 | Msa0920020:CDS |
| ATTCCACCGATGTTAAGTCA+TGG | 0.659227 | 6_2:-53402026 | Msa0920020:CDS |
| CGACTTGTTAGATATTACGG+AGG | 0.668703 | 6_2:-53401945 | Msa0920020:CDS |
| AATGGTAGAGAGATTCGGCA+TGG | 0.678484 | 6_2:+53401911 | None:intergenic |
| TTGGATCGGAGAATTTATGG+AGG | 0.680463 | 6_2:+53401694 | None:intergenic |
| ACCAGTCCATGACTTAACAT+CGG | 0.686650 | 6_2:+53402020 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACCCTTATGTAAAAAATTT+CGG | - | chr6_2:53401908-53401927 | Msa0920020:CDS | 20.0% |
| !!! | AACAAGAAAAGGTATAAATA+TGG | + | chr6_2:53402492-53402511 | None:intergenic | 20.0% |
| !!! | ATATTTATACCTTTTCTTGT+TGG | - | chr6_2:53402491-53402510 | Msa0920020:CDS | 20.0% |
| !! | AACCCTTATGTAAAAAATTT+CGG | - | chr6_2:53401908-53401927 | Msa0920020:CDS | 20.0% |
| !!! | AACAAGAAAAGGTATAAATA+TGG | + | chr6_2:53402492-53402511 | None:intergenic | 20.0% |
| !!! | ATATTTATACCTTTTCTTGT+TGG | - | chr6_2:53402491-53402510 | Msa0920020:CDS | 20.0% |
| ! | ACCCTTATGTAAAAAATTTC+GGG | - | chr6_2:53401909-53401928 | Msa0920020:CDS | 25.0% |
| !!! | CTAACTTCACTTTTTTTTTC+TGG | + | chr6_2:53401986-53402005 | None:intergenic | 25.0% |
| ! | ACCCTTATGTAAAAAATTTC+GGG | - | chr6_2:53401909-53401928 | Msa0920020:CDS | 25.0% |
| !!! | CTAACTTCACTTTTTTTTTC+TGG | + | chr6_2:53401986-53402005 | None:intergenic | 25.0% |
| !!! | CCCCGAAATTTTTTACATAA+GGG | + | chr6_2:53401913-53401932 | None:intergenic | 30.0% |
| CCCTTATGTAAAAAATTTCG+GGG | - | chr6_2:53401910-53401929 | Msa0920020:CDS | 30.0% | |
| CCTTATGTAAAAAATTTCGG+GGG | - | chr6_2:53401911-53401930 | Msa0920020:CDS | 30.0% | |
| CTTATGTAAAAAATTTCGGG+GGG | - | chr6_2:53401912-53401931 | Msa0920020:CDS | 30.0% | |
| AACACCAACACATAGAAAAA+GGG | + | chr6_2:53402159-53402178 | None:intergenic | 30.0% | |
| !! | ACTCGACTTGTTAGATATTA+CGG | - | chr6_2:53402197-53402216 | Msa0920020:intron | 30.0% |
| ! | TTTATACCTTTTCTTGTTGG+AGG | - | chr6_2:53402494-53402513 | Msa0920020:CDS | 30.0% |
| ! | TTATACCTTTTCTTGTTGGA+GGG | - | chr6_2:53402495-53402514 | Msa0920020:CDS | 30.0% |
| !!! | CCCCGAAATTTTTTACATAA+GGG | + | chr6_2:53401913-53401932 | None:intergenic | 30.0% |
| CCCTTATGTAAAAAATTTCG+GGG | - | chr6_2:53401910-53401929 | Msa0920020:CDS | 30.0% | |
| CCTTATGTAAAAAATTTCGG+GGG | - | chr6_2:53401911-53401930 | Msa0920020:CDS | 30.0% | |
| CTTATGTAAAAAATTTCGGG+GGG | - | chr6_2:53401912-53401931 | Msa0920020:CDS | 30.0% | |
| AACACCAACACATAGAAAAA+GGG | + | chr6_2:53402159-53402178 | None:intergenic | 30.0% | |
| !! | ACTCGACTTGTTAGATATTA+CGG | - | chr6_2:53402197-53402216 | Msa0920020:intron | 30.0% |
| ! | TTTATACCTTTTCTTGTTGG+AGG | - | chr6_2:53402494-53402513 | Msa0920020:CDS | 30.0% |
| ! | TTATACCTTTTCTTGTTGGA+GGG | - | chr6_2:53402495-53402514 | Msa0920020:CDS | 30.0% |
| ! | ATAGGTACTTTTCAATGCAG+CGG | + | chr6_2:53401778-53401797 | None:intergenic | 35.0% |
| AAGTACCTATGCACTATTTC+CGG | - | chr6_2:53401788-53401807 | Msa0920020:CDS | 35.0% | |
| TATCTTCCTTATCAGTGAAC+CGG | + | chr6_2:53401810-53401829 | None:intergenic | 35.0% | |
| ACTGATAAGGAAGATAGAGT+TGG | - | chr6_2:53401814-53401833 | Msa0920020:CDS | 35.0% | |
| CTGATAAGGAAGATAGAGTT+GGG | - | chr6_2:53401815-53401834 | Msa0920020:CDS | 35.0% | |
| TGATAAGGAAGATAGAGTTG+GGG | - | chr6_2:53401816-53401835 | Msa0920020:CDS | 35.0% | |
| !!! | CCCCCGAAATTTTTTACATA+AGG | + | chr6_2:53401914-53401933 | None:intergenic | 35.0% |
| AAGTTAGAAAGCCGTATGAT+AGG | - | chr6_2:53401999-53402018 | Msa0920020:CDS | 35.0% | |
| GAACACCAACACATAGAAAA+AGG | + | chr6_2:53402160-53402179 | None:intergenic | 35.0% | |
| ! | TAACAAGTCGAGTCTTATGT+CGG | + | chr6_2:53402190-53402209 | None:intergenic | 35.0% |
| !! | GACTTGTTAGATATTACGGA+GGG | - | chr6_2:53402201-53402220 | Msa0920020:intron | 35.0% |
| AAGGAAATGGTAGAGAGATT+CGG | + | chr6_2:53402242-53402261 | None:intergenic | 35.0% | |
| !! | TGGCTACTAAGCTATTTCTT+TGG | + | chr6_2:53402343-53402362 | None:intergenic | 35.0% |
| CACACGATTATATAGCCAAA+GGG | + | chr6_2:53402405-53402424 | None:intergenic | 35.0% | |
| CTATATAATCGTGTGGTTTC+TGG | - | chr6_2:53402410-53402429 | Msa0920020:CDS | 35.0% | |
| GGAGAATTTATGGAGGAAAT+CGG | + | chr6_2:53402447-53402466 | None:intergenic | 35.0% | |
| CATTTGGATCGGAGAATTTA+TGG | + | chr6_2:53402457-53402476 | None:intergenic | 35.0% | |
| CATAAATTCTCCGATCCAAA+TGG | - | chr6_2:53402455-53402474 | Msa0920020:CDS | 35.0% | |
| ! | TATACCTTTTCTTGTTGGAG+GGG | - | chr6_2:53402496-53402515 | Msa0920020:CDS | 35.0% |
| ! | ATAGGTACTTTTCAATGCAG+CGG | + | chr6_2:53401778-53401797 | None:intergenic | 35.0% |
| AAGTACCTATGCACTATTTC+CGG | - | chr6_2:53401788-53401807 | Msa0920020:CDS | 35.0% | |
| TATCTTCCTTATCAGTGAAC+CGG | + | chr6_2:53401810-53401829 | None:intergenic | 35.0% | |
| ACTGATAAGGAAGATAGAGT+TGG | - | chr6_2:53401814-53401833 | Msa0920020:CDS | 35.0% | |
| CTGATAAGGAAGATAGAGTT+GGG | - | chr6_2:53401815-53401834 | Msa0920020:CDS | 35.0% | |
| TGATAAGGAAGATAGAGTTG+GGG | - | chr6_2:53401816-53401835 | Msa0920020:CDS | 35.0% | |
| !!! | CCCCCGAAATTTTTTACATA+AGG | + | chr6_2:53401914-53401933 | None:intergenic | 35.0% |
| AAGTTAGAAAGCCGTATGAT+AGG | - | chr6_2:53401999-53402018 | Msa0920020:CDS | 35.0% | |
| GAACACCAACACATAGAAAA+AGG | + | chr6_2:53402160-53402179 | None:intergenic | 35.0% | |
| ! | TAACAAGTCGAGTCTTATGT+CGG | + | chr6_2:53402190-53402209 | None:intergenic | 35.0% |
| !! | GACTTGTTAGATATTACGGA+GGG | - | chr6_2:53402201-53402220 | Msa0920020:intron | 35.0% |
| AAGGAAATGGTAGAGAGATT+CGG | + | chr6_2:53402242-53402261 | None:intergenic | 35.0% | |
| !! | TGGCTACTAAGCTATTTCTT+TGG | + | chr6_2:53402343-53402362 | None:intergenic | 35.0% |
| CACACGATTATATAGCCAAA+GGG | + | chr6_2:53402405-53402424 | None:intergenic | 35.0% | |
| CTATATAATCGTGTGGTTTC+TGG | - | chr6_2:53402410-53402429 | Msa0920020:CDS | 35.0% | |
| GGAGAATTTATGGAGGAAAT+CGG | + | chr6_2:53402447-53402466 | None:intergenic | 35.0% | |
| CATTTGGATCGGAGAATTTA+TGG | + | chr6_2:53402457-53402476 | None:intergenic | 35.0% | |
| CATAAATTCTCCGATCCAAA+TGG | - | chr6_2:53402455-53402474 | Msa0920020:CDS | 35.0% | |
| ! | TATACCTTTTCTTGTTGGAG+GGG | - | chr6_2:53402496-53402515 | Msa0920020:CDS | 35.0% |
| TTCCTTTATGAGGTCCTATC+GGG | + | chr6_2:53401676-53401695 | None:intergenic | 40.0% | |
| GTTCCTTTATGAGGTCCTAT+CGG | + | chr6_2:53401677-53401696 | None:intergenic | 40.0% | |
| GATAGGACCTCATAAAGGAA+CGG | - | chr6_2:53401676-53401695 | Msa0920020:CDS | 40.0% | |
| ATAGGACCTCATAAAGGAAC+GGG | - | chr6_2:53401677-53401696 | Msa0920020:CDS | 40.0% | |
| ! | TAGGTACTTTTCAATGCAGC+GGG | + | chr6_2:53401777-53401796 | None:intergenic | 40.0% |
| CTATTTCCGGTTCACTGATA+AGG | - | chr6_2:53401801-53401820 | Msa0920020:CDS | 40.0% | |
| TGTGATACTCAAGTATGACC+CGG | - | chr6_2:53401852-53401871 | Msa0920020:CDS | 40.0% | |
| ATAGTTAGCATGTATCTCCC+CGG | + | chr6_2:53401874-53401893 | None:intergenic | 40.0% | |
| GGGAGATACATGCTAACTAT+GGG | - | chr6_2:53401874-53401893 | Msa0920020:CDS | 40.0% | |
| TTAGAAAGCCGTATGATAGG+CGG | - | chr6_2:53402002-53402021 | Msa0920020:CDS | 40.0% | |
| GATAGTTACCGCCTATCATA+CGG | + | chr6_2:53402013-53402032 | None:intergenic | 40.0% | |
| TAGGCGGTAACTATCTTGTA+CGG | - | chr6_2:53402018-53402037 | Msa0920020:CDS | 40.0% | |
| GGTAACTATCTTGTACGGTT+CGG | - | chr6_2:53402023-53402042 | Msa0920020:CDS | 40.0% | |
| GTAACTATCTTGTACGGTTC+GGG | - | chr6_2:53402024-53402043 | Msa0920020:CDS | 40.0% | |
| TAACTATCTTGTACGGTTCG+GGG | - | chr6_2:53402025-53402044 | Msa0920020:CDS | 40.0% | |
| !! | TTTGGCTCTATCGAACATAC+AGG | - | chr6_2:53402082-53402101 | Msa0920020:intron | 40.0% |
| !! | TTGGCTCTATCGAACATACA+GGG | - | chr6_2:53402083-53402102 | Msa0920020:intron | 40.0% |
| CTATCGAACATACAGGGAAT+TGG | - | chr6_2:53402089-53402108 | Msa0920020:intron | 40.0% | |
| ATTCCACCGATGTTAAGTCA+TGG | - | chr6_2:53402119-53402138 | Msa0920020:intron | 40.0% | |
| ACCAGTCCATGACTTAACAT+CGG | + | chr6_2:53402128-53402147 | None:intergenic | 40.0% | |
| ACACATAGAAAAAGGGCTGA+AGG | + | chr6_2:53402152-53402171 | None:intergenic | 40.0% | |
| ! | TCAGCCCTTTTTCTATGTGT+TGG | - | chr6_2:53402152-53402171 | Msa0920020:intron | 40.0% |
| !! | CGACTTGTTAGATATTACGG+AGG | - | chr6_2:53402200-53402219 | Msa0920020:intron | 40.0% |
| CAAAGTGGAAGAGAAGGAAA+TGG | + | chr6_2:53402255-53402274 | None:intergenic | 40.0% | |
| CATTTCCTTCTCTTCCACTT+TGG | - | chr6_2:53402253-53402272 | Msa0920020:intron | 40.0% | |
| TGAACTCATATTGGCCAAAG+TGG | + | chr6_2:53402270-53402289 | None:intergenic | 40.0% | |
| AGTACCAGGTGAACTCATAT+TGG | + | chr6_2:53402279-53402298 | None:intergenic | 40.0% | |
| CCACACGATTATATAGCCAA+AGG | + | chr6_2:53402406-53402425 | None:intergenic | 40.0% | |
| CCTTTGGCTATATAATCGTG+TGG | - | chr6_2:53402403-53402422 | Msa0920020:CDS | 40.0% | |
| TTGGATCGGAGAATTTATGG+AGG | + | chr6_2:53402454-53402473 | None:intergenic | 40.0% | |
| ! | AACTTCTCTGCCATTTGGAT+CGG | + | chr6_2:53402468-53402487 | None:intergenic | 40.0% |
| ATGGAAACTTCTCTGCCATT+TGG | + | chr6_2:53402473-53402492 | None:intergenic | 40.0% | |
| TTCCTTTATGAGGTCCTATC+GGG | + | chr6_2:53401676-53401695 | None:intergenic | 40.0% | |
| GTTCCTTTATGAGGTCCTAT+CGG | + | chr6_2:53401677-53401696 | None:intergenic | 40.0% | |
| GATAGGACCTCATAAAGGAA+CGG | - | chr6_2:53401676-53401695 | Msa0920020:CDS | 40.0% | |
| ATAGGACCTCATAAAGGAAC+GGG | - | chr6_2:53401677-53401696 | Msa0920020:CDS | 40.0% | |
| ! | TAGGTACTTTTCAATGCAGC+GGG | + | chr6_2:53401777-53401796 | None:intergenic | 40.0% |
| CTATTTCCGGTTCACTGATA+AGG | - | chr6_2:53401801-53401820 | Msa0920020:CDS | 40.0% | |
| TGTGATACTCAAGTATGACC+CGG | - | chr6_2:53401852-53401871 | Msa0920020:CDS | 40.0% | |
| ATAGTTAGCATGTATCTCCC+CGG | + | chr6_2:53401874-53401893 | None:intergenic | 40.0% | |
| GGGAGATACATGCTAACTAT+GGG | - | chr6_2:53401874-53401893 | Msa0920020:CDS | 40.0% | |
| TTAGAAAGCCGTATGATAGG+CGG | - | chr6_2:53402002-53402021 | Msa0920020:CDS | 40.0% | |
| GATAGTTACCGCCTATCATA+CGG | + | chr6_2:53402013-53402032 | None:intergenic | 40.0% | |
| TAGGCGGTAACTATCTTGTA+CGG | - | chr6_2:53402018-53402037 | Msa0920020:CDS | 40.0% | |
| GGTAACTATCTTGTACGGTT+CGG | - | chr6_2:53402023-53402042 | Msa0920020:CDS | 40.0% | |
| GTAACTATCTTGTACGGTTC+GGG | - | chr6_2:53402024-53402043 | Msa0920020:CDS | 40.0% | |
| TAACTATCTTGTACGGTTCG+GGG | - | chr6_2:53402025-53402044 | Msa0920020:CDS | 40.0% | |
| !! | TTTGGCTCTATCGAACATAC+AGG | - | chr6_2:53402082-53402101 | Msa0920020:intron | 40.0% |
| !! | TTGGCTCTATCGAACATACA+GGG | - | chr6_2:53402083-53402102 | Msa0920020:intron | 40.0% |
| CTATCGAACATACAGGGAAT+TGG | - | chr6_2:53402089-53402108 | Msa0920020:intron | 40.0% | |
| ATTCCACCGATGTTAAGTCA+TGG | - | chr6_2:53402119-53402138 | Msa0920020:intron | 40.0% | |
| ACCAGTCCATGACTTAACAT+CGG | + | chr6_2:53402128-53402147 | None:intergenic | 40.0% | |
| ACACATAGAAAAAGGGCTGA+AGG | + | chr6_2:53402152-53402171 | None:intergenic | 40.0% | |
| ! | TCAGCCCTTTTTCTATGTGT+TGG | - | chr6_2:53402152-53402171 | Msa0920020:intron | 40.0% |
| !! | CGACTTGTTAGATATTACGG+AGG | - | chr6_2:53402200-53402219 | Msa0920020:intron | 40.0% |
| CAAAGTGGAAGAGAAGGAAA+TGG | + | chr6_2:53402255-53402274 | None:intergenic | 40.0% | |
| CATTTCCTTCTCTTCCACTT+TGG | - | chr6_2:53402253-53402272 | Msa0920020:intron | 40.0% | |
| TGAACTCATATTGGCCAAAG+TGG | + | chr6_2:53402270-53402289 | None:intergenic | 40.0% | |
| AGTACCAGGTGAACTCATAT+TGG | + | chr6_2:53402279-53402298 | None:intergenic | 40.0% | |
| CCACACGATTATATAGCCAA+AGG | + | chr6_2:53402406-53402425 | None:intergenic | 40.0% | |
| CCTTTGGCTATATAATCGTG+TGG | - | chr6_2:53402403-53402422 | Msa0920020:CDS | 40.0% | |
| TTGGATCGGAGAATTTATGG+AGG | + | chr6_2:53402454-53402473 | None:intergenic | 40.0% | |
| ! | AACTTCTCTGCCATTTGGAT+CGG | + | chr6_2:53402468-53402487 | None:intergenic | 40.0% |
| ATGGAAACTTCTCTGCCATT+TGG | + | chr6_2:53402473-53402492 | None:intergenic | 40.0% | |
| TTATGAGGTCCTATCGGGAT+AGG | + | chr6_2:53401671-53401690 | None:intergenic | 45.0% | |
| ATCCCGATAGGACCTCATAA+AGG | - | chr6_2:53401671-53401690 | Msa0920020:CDS | 45.0% | |
| ! | AGGTACTTTTCAATGCAGCG+GGG | + | chr6_2:53401776-53401795 | None:intergenic | 45.0% |
| GTGAACCGGAAATAGTGCAT+AGG | + | chr6_2:53401796-53401815 | None:intergenic | 45.0% | |
| TAAGGAAGATAGAGTTGGGG+TGG | - | chr6_2:53401819-53401838 | Msa0920020:CDS | 45.0% | |
| AAGGAAGATAGAGTTGGGGT+GGG | - | chr6_2:53401820-53401839 | Msa0920020:CDS | 45.0% | |
| GTGATACTCAAGTATGACCC+GGG | - | chr6_2:53401853-53401872 | Msa0920020:CDS | 45.0% | |
| TGATACTCAAGTATGACCCG+GGG | - | chr6_2:53401854-53401873 | Msa0920020:CDS | 45.0% | |
| TAGTTAGCATGTATCTCCCC+GGG | + | chr6_2:53401873-53401892 | None:intergenic | 45.0% | |
| GGGGAGATACATGCTAACTA+TGG | - | chr6_2:53401873-53401892 | Msa0920020:CDS | 45.0% | |
| GCTAACTATGGGTAGAAAGC+AGG | - | chr6_2:53401885-53401904 | Msa0920020:CDS | 45.0% | |
| ! | AACTATCTTGTACGGTTCGG+GGG | - | chr6_2:53402026-53402045 | Msa0920020:CDS | 45.0% |
| TCGAACATACAGGGAATTGG+AGG | - | chr6_2:53402092-53402111 | Msa0920020:intron | 45.0% | |
| AGTCCATGACTTAACATCGG+TGG | + | chr6_2:53402125-53402144 | None:intergenic | 45.0% | |
| ACCGATGTTAAGTCATGGAC+TGG | - | chr6_2:53402124-53402143 | Msa0920020:intron | 45.0% | |
| AATGGTAGAGAGATTCGGCA+TGG | + | chr6_2:53402237-53402256 | None:intergenic | 45.0% | |
| ATTGGCCAAAGTGGAAGAGA+AGG | + | chr6_2:53402261-53402280 | None:intergenic | 45.0% | |
| TTGGCCAATATGAGTTCACC+TGG | - | chr6_2:53402272-53402291 | Msa0920020:intron | 45.0% | |
| ! | CCTGGTACTAGCAGCTTTAT+CGG | - | chr6_2:53402290-53402309 | Msa0920020:intron | 45.0% |
| ! | CTGGTACTAGCAGCTTTATC+GGG | - | chr6_2:53402291-53402310 | Msa0920020:intron | 45.0% |
| ! | TGGTACTAGCAGCTTTATCG+GGG | - | chr6_2:53402292-53402311 | Msa0920020:intron | 45.0% |
| TGGAAAGCTCCTACTGAGAT+GGG | + | chr6_2:53402323-53402342 | None:intergenic | 45.0% | |
| TTGGAAAGCTCCTACTGAGA+TGG | + | chr6_2:53402324-53402343 | None:intergenic | 45.0% | |
| TTATGAGGTCCTATCGGGAT+AGG | + | chr6_2:53401671-53401690 | None:intergenic | 45.0% | |
| ATCCCGATAGGACCTCATAA+AGG | - | chr6_2:53401671-53401690 | Msa0920020:CDS | 45.0% | |
| ! | AGGTACTTTTCAATGCAGCG+GGG | + | chr6_2:53401776-53401795 | None:intergenic | 45.0% |
| GTGAACCGGAAATAGTGCAT+AGG | + | chr6_2:53401796-53401815 | None:intergenic | 45.0% | |
| TAAGGAAGATAGAGTTGGGG+TGG | - | chr6_2:53401819-53401838 | Msa0920020:CDS | 45.0% | |
| AAGGAAGATAGAGTTGGGGT+GGG | - | chr6_2:53401820-53401839 | Msa0920020:CDS | 45.0% | |
| GTGATACTCAAGTATGACCC+GGG | - | chr6_2:53401853-53401872 | Msa0920020:CDS | 45.0% | |
| TGATACTCAAGTATGACCCG+GGG | - | chr6_2:53401854-53401873 | Msa0920020:CDS | 45.0% | |
| TAGTTAGCATGTATCTCCCC+GGG | + | chr6_2:53401873-53401892 | None:intergenic | 45.0% | |
| GGGGAGATACATGCTAACTA+TGG | - | chr6_2:53401873-53401892 | Msa0920020:CDS | 45.0% | |
| GCTAACTATGGGTAGAAAGC+AGG | - | chr6_2:53401885-53401904 | Msa0920020:CDS | 45.0% | |
| ! | AACTATCTTGTACGGTTCGG+GGG | - | chr6_2:53402026-53402045 | Msa0920020:CDS | 45.0% |
| TCGAACATACAGGGAATTGG+AGG | - | chr6_2:53402092-53402111 | Msa0920020:intron | 45.0% | |
| AGTCCATGACTTAACATCGG+TGG | + | chr6_2:53402125-53402144 | None:intergenic | 45.0% | |
| ACCGATGTTAAGTCATGGAC+TGG | - | chr6_2:53402124-53402143 | Msa0920020:intron | 45.0% | |
| AATGGTAGAGAGATTCGGCA+TGG | + | chr6_2:53402237-53402256 | None:intergenic | 45.0% | |
| ATTGGCCAAAGTGGAAGAGA+AGG | + | chr6_2:53402261-53402280 | None:intergenic | 45.0% | |
| TTGGCCAATATGAGTTCACC+TGG | - | chr6_2:53402272-53402291 | Msa0920020:intron | 45.0% | |
| ! | CCTGGTACTAGCAGCTTTAT+CGG | - | chr6_2:53402290-53402309 | Msa0920020:intron | 45.0% |
| ! | CTGGTACTAGCAGCTTTATC+GGG | - | chr6_2:53402291-53402310 | Msa0920020:intron | 45.0% |
| ! | TGGTACTAGCAGCTTTATCG+GGG | - | chr6_2:53402292-53402311 | Msa0920020:intron | 45.0% |
| TGGAAAGCTCCTACTGAGAT+GGG | + | chr6_2:53402323-53402342 | None:intergenic | 45.0% | |
| TTGGAAAGCTCCTACTGAGA+TGG | + | chr6_2:53402324-53402343 | None:intergenic | 45.0% | |
| ACAGCTCCCGTTCCTTTATG+AGG | + | chr6_2:53401686-53401705 | None:intergenic | 50.0% | |
| TTCCATATTGCCGAGCCGAA+TGG | - | chr6_2:53401713-53401732 | Msa0920020:CDS | 50.0% | |
| !! | CGTACAGAAGTGCTGCCATT+CGG | + | chr6_2:53401731-53401750 | None:intergenic | 50.0% |
| AGGAAGATAGAGTTGGGGTG+GGG | - | chr6_2:53401821-53401840 | Msa0920020:CDS | 50.0% | |
| ACTACCATCGATCGACAGAG+CGG | - | chr6_2:53401955-53401974 | Msa0920020:CDS | 50.0% | |
| ! | ACTATCTTGTACGGTTCGGG+GGG | - | chr6_2:53402027-53402046 | Msa0920020:CDS | 50.0% |
| CAAAGATTCCCCCCACTGAT+CGG | + | chr6_2:53402066-53402085 | None:intergenic | 50.0% | |
| CCGATAAAGCTGCTAGTACC+AGG | + | chr6_2:53402293-53402312 | None:intergenic | 50.0% | |
| GGGGAATTTCCCATCTCAGT+AGG | - | chr6_2:53402311-53402330 | Msa0920020:intron | 50.0% | |
| TAGCCACATTAGCAGCGCTT+GGG | - | chr6_2:53402357-53402376 | Msa0920020:intron | 50.0% | |
| ! | GCAGCGCTTGGGATGATTTT+AGG | - | chr6_2:53402368-53402387 | Msa0920020:intron | 50.0% |
| ! | GCTTGGGATGATTTTAGGCG+CGG | - | chr6_2:53402373-53402392 | Msa0920020:intron | 50.0% |
| ACAGCTCCCGTTCCTTTATG+AGG | + | chr6_2:53401686-53401705 | None:intergenic | 50.0% | |
| TTCCATATTGCCGAGCCGAA+TGG | - | chr6_2:53401713-53401732 | Msa0920020:CDS | 50.0% | |
| !! | CGTACAGAAGTGCTGCCATT+CGG | + | chr6_2:53401731-53401750 | None:intergenic | 50.0% |
| AGGAAGATAGAGTTGGGGTG+GGG | - | chr6_2:53401821-53401840 | Msa0920020:CDS | 50.0% | |
| ACTACCATCGATCGACAGAG+CGG | - | chr6_2:53401955-53401974 | Msa0920020:CDS | 50.0% | |
| ! | ACTATCTTGTACGGTTCGGG+GGG | - | chr6_2:53402027-53402046 | Msa0920020:CDS | 50.0% |
| CAAAGATTCCCCCCACTGAT+CGG | + | chr6_2:53402066-53402085 | None:intergenic | 50.0% | |
| CCGATAAAGCTGCTAGTACC+AGG | + | chr6_2:53402293-53402312 | None:intergenic | 50.0% | |
| GGGGAATTTCCCATCTCAGT+AGG | - | chr6_2:53402311-53402330 | Msa0920020:intron | 50.0% | |
| TAGCCACATTAGCAGCGCTT+GGG | - | chr6_2:53402357-53402376 | Msa0920020:intron | 50.0% | |
| ! | GCAGCGCTTGGGATGATTTT+AGG | - | chr6_2:53402368-53402387 | Msa0920020:intron | 50.0% |
| ! | GCTTGGGATGATTTTAGGCG+CGG | - | chr6_2:53402373-53402392 | Msa0920020:intron | 50.0% |
| GAGGTCCTATCGGGATAGGT+AGG | + | chr6_2:53401667-53401686 | None:intergenic | 55.0% | |
| !! | TGCCATTCGGCTCGGCAATA+TGG | + | chr6_2:53401718-53401737 | None:intergenic | 55.0% |
| !! | AGAAGTGCTGCCATTCGGCT+CGG | + | chr6_2:53401726-53401745 | None:intergenic | 55.0% |
| GGAAGATAGAGTTGGGGTGG+GGG | - | chr6_2:53401822-53401841 | Msa0920020:CDS | 55.0% | |
| ! | TGTACGGTTCGGGGGGTAAT+CGG | - | chr6_2:53402034-53402053 | Msa0920020:intron | 55.0% |
| AATCGGCGTACTCCGATCAG+TGG | - | chr6_2:53402051-53402070 | Msa0920020:intron | 55.0% | |
| ATCGGCGTACTCCGATCAGT+GGG | - | chr6_2:53402052-53402071 | Msa0920020:intron | 55.0% | |
| CGATCAGTGGGGGGAATCTT+TGG | - | chr6_2:53402064-53402083 | Msa0920020:intron | 55.0% | |
| GTAGCCACATTAGCAGCGCT+TGG | - | chr6_2:53402356-53402375 | Msa0920020:intron | 55.0% | |
| ! | CATCCCAAGCGCTGCTAATG+TGG | + | chr6_2:53402363-53402382 | None:intergenic | 55.0% |
| GTCGCCCCTCCAACAAGAAA+AGG | + | chr6_2:53402503-53402522 | None:intergenic | 55.0% | |
| GAGGTCCTATCGGGATAGGT+AGG | + | chr6_2:53401667-53401686 | None:intergenic | 55.0% | |
| !! | TGCCATTCGGCTCGGCAATA+TGG | + | chr6_2:53401718-53401737 | None:intergenic | 55.0% |
| !! | AGAAGTGCTGCCATTCGGCT+CGG | + | chr6_2:53401726-53401745 | None:intergenic | 55.0% |
| GGAAGATAGAGTTGGGGTGG+GGG | - | chr6_2:53401822-53401841 | Msa0920020:CDS | 55.0% | |
| ! | TGTACGGTTCGGGGGGTAAT+CGG | - | chr6_2:53402034-53402053 | Msa0920020:intron | 55.0% |
| AATCGGCGTACTCCGATCAG+TGG | - | chr6_2:53402051-53402070 | Msa0920020:intron | 55.0% | |
| ATCGGCGTACTCCGATCAGT+GGG | - | chr6_2:53402052-53402071 | Msa0920020:intron | 55.0% | |
| CGATCAGTGGGGGGAATCTT+TGG | - | chr6_2:53402064-53402083 | Msa0920020:intron | 55.0% | |
| GTAGCCACATTAGCAGCGCT+TGG | - | chr6_2:53402356-53402375 | Msa0920020:intron | 55.0% | |
| ! | CATCCCAAGCGCTGCTAATG+TGG | + | chr6_2:53402363-53402382 | None:intergenic | 55.0% |
| GTCGCCCCTCCAACAAGAAA+AGG | + | chr6_2:53402503-53402522 | None:intergenic | 55.0% | |
| CTGGGCCTACCTATCCCGAT+AGG | - | chr6_2:53401659-53401678 | Msa0920020:CDS | 60.0% | |
| CGTTCCGCTCTGTCGATCGA+TGG | + | chr6_2:53401962-53401981 | None:intergenic | 60.0% | |
| TCGGCGTACTCCGATCAGTG+GGG | - | chr6_2:53402053-53402072 | Msa0920020:intron | 60.0% | |
| TAGGCGCGGCGTATTCCCTT+TGG | - | chr6_2:53402387-53402406 | Msa0920020:CDS | 60.0% | |
| CTGGGCCTACCTATCCCGAT+AGG | - | chr6_2:53401659-53401678 | Msa0920020:CDS | 60.0% | |
| CGTTCCGCTCTGTCGATCGA+TGG | + | chr6_2:53401962-53401981 | None:intergenic | 60.0% | |
| TCGGCGTACTCCGATCAGTG+GGG | - | chr6_2:53402053-53402072 | Msa0920020:intron | 60.0% | |
| TAGGCGCGGCGTATTCCCTT+TGG | - | chr6_2:53402387-53402406 | Msa0920020:CDS | 60.0% | |
| ATGGAGGGAGGGGGAAGGCT+TGG | - | chr6_2:53401635-53401654 | Msa0920020:CDS | 65.0% | |
| TGGAGGGAGGGGGAAGGCTT+GGG | - | chr6_2:53401636-53401655 | Msa0920020:CDS | 65.0% | |
| CGGCGTACTCCGATCAGTGG+GGG | - | chr6_2:53402054-53402073 | Msa0920020:intron | 65.0% | |
| GGCGTACTCCGATCAGTGGG+GGG | - | chr6_2:53402055-53402074 | Msa0920020:intron | 65.0% | |
| ATGGAGGGAGGGGGAAGGCT+TGG | - | chr6_2:53401635-53401654 | Msa0920020:CDS | 65.0% | |
| TGGAGGGAGGGGGAAGGCTT+GGG | - | chr6_2:53401636-53401655 | Msa0920020:CDS | 65.0% | |
| CGGCGTACTCCGATCAGTGG+GGG | - | chr6_2:53402054-53402073 | Msa0920020:intron | 65.0% | |
| GGCGTACTCCGATCAGTGGG+GGG | - | chr6_2:53402055-53402074 | Msa0920020:intron | 65.0% | |
| GGAGGGGGAAGGCTTGGGCT+GGG | - | chr6_2:53401641-53401660 | Msa0920020:CDS | 70.0% | |
| GGAGGGGGAAGGCTTGGGCT+GGG | - | chr6_2:53401641-53401660 | Msa0920020:CDS | 70.0% | |
| GGGAGGGGGAAGGCTTGGGC+TGG | - | chr6_2:53401640-53401659 | Msa0920020:CDS | 75.0% | |
| GGGAGGGGGAAGGCTTGGGC+TGG | - | chr6_2:53401640-53401659 | Msa0920020:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 53401635 | 53402532 | 53401635 | ID=Msa0920020;Name=Msa0920020 |
| chr6_2 | mRNA | 53401635 | 53402532 | 53401635 | ID=Msa0920020-mRNA-1;Parent=Msa0920020;Name=Msa0920020-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|0|0|2|0|189 |
| chr6_2 | exon | 53402378 | 53402532 | 53402378 | ID=Msa0920020-mRNA-1:exon:7998;Parent=Msa0920020-mRNA-1 |
| chr6_2 | exon | 53401635 | 53402049 | 53401635 | ID=Msa0920020-mRNA-1:exon:7997;Parent=Msa0920020-mRNA-1 |
| chr6_2 | CDS | 53402378 | 53402532 | 53402378 | ID=Msa0920020-mRNA-1:cds;Parent=Msa0920020-mRNA-1 |
| chr6_2 | CDS | 53401635 | 53402049 | 53401635 | ID=Msa0920020-mRNA-1:cds;Parent=Msa0920020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
