Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1453860 | sp|Q04050|NU4M_BRACM | 88.764 | 89 | 10 | 0 | 1 | 89 | 374 | 462 | 3.25e-44 | 156 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1453860 | A0A072THH4 | 87.379 | 206 | 12 | 2 | 1 | 193 | 96 | 300 | 2.99e-119 | 351 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1391970 | Msa1453860 | 0.847261 | 1.293553e-59 | -8.615850e-47 |
| Msa1391980 | Msa1453860 | 0.916732 | 1.249323e-85 | -8.615850e-47 |
| Msa1391990 | Msa1453860 | 0.861600 | 9.154510e-64 | -8.615850e-47 |
| Msa1392030 | Msa1453860 | 0.860178 | 2.476096e-63 | -8.615850e-47 |
| Msa1392120 | Msa1453860 | 0.823387 | 1.423943e-53 | -8.615850e-47 |
| Msa1392160 | Msa1453860 | 0.824612 | 7.343228e-54 | -8.615850e-47 |
| Msa1453860 | Msa1453870 | 0.836635 | 8.337219e-57 | -8.615850e-47 |
| Msa0983190 | Msa1453860 | 0.804823 | 1.795655e-49 | -8.615850e-47 |
| Msa0983300 | Msa1453860 | 0.864146 | 1.500218e-64 | -8.615850e-47 |
| Msa0983340 | Msa1453860 | 0.884535 | 1.764338e-71 | -8.615850e-47 |
| Msa0983350 | Msa1453860 | 0.846627 | 1.929116e-59 | -8.615850e-47 |
| Msa0983460 | Msa1453860 | 0.825718 | 4.023566e-54 | -8.615850e-47 |
| Msa0908850 | Msa1453860 | 0.810008 | 1.427061e-50 | -8.615850e-47 |
| Msa0908870 | Msa1453860 | 0.810148 | 1.331565e-50 | -8.615850e-47 |
| Msa0920020 | Msa1453860 | 0.876786 | 1.058009e-68 | -8.615850e-47 |
| Msa0920060 | Msa1453860 | 0.861100 | 1.300294e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1453860 | MtrunA17_MTg0491601 | 90.625 | 96 | 4 | 1 | 1 | 96 | 37 | 127 | 3.47e-54 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1453860 | ATMG00580.1 | 87.640 | 89 | 11 | 0 | 1 | 89 | 374 | 462 | 6.87e-44 | 152 |
Find 61 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATATAATCGTGTGGTTTC+TGG | 0.115346 | tig0034911:+23148 | Msa1453860:CDS |
| CATTTCTGTCTTTAGTCTTT+AGG | 0.139002 | tig0034911:+23400 | Msa1453860:CDS |
| ACCGAACGCGTTCGAGTTAT+TGG | 0.162538 | tig0034911:-23610 | None:intergenic |
| ATTTCTGTCTTTAGTCTTTA+GGG | 0.214411 | tig0034911:+23401 | Msa1453860:CDS |
| CATTTGGATCGGAGAATTTA+TGG | 0.225223 | tig0034911:-23192 | None:intergenic |
| TTGGCTGAGCCGTATCTTGC+TGG | 0.274191 | tig0034911:+23480 | Msa1453860:CDS |
| TGGCTACTAAGCTATTTCTT+TGG | 0.294828 | tig0034911:-23078 | None:intergenic |
| CCTGGTACTAGCAGCTTTAT+CGG | 0.335139 | tig0034911:+23028 | Msa1453860:CDS |
| ATGGAAACTTCTCTGCCATT+TGG | 0.362258 | tig0034911:-23208 | None:intergenic |
| ATACGGACTCCAAGTTCTTA+TGG | 0.378715 | tig0034911:+23678 | Msa1453860:CDS |
| CTGGTACTAGCAGCTTTATC+GGG | 0.404966 | tig0034911:+23029 | Msa1453860:CDS |
| CTAAAGACTAAAGACAGAAA+TGG | 0.416280 | tig0034911:-23399 | None:intergenic |
| CGCGCTCTGCCATAAGAACT+TGG | 0.425834 | tig0034911:-23687 | None:intergenic |
| GCCAATAACTCGAACGCGTT+CGG | 0.430894 | tig0034911:+23609 | Msa1453860:CDS |
| AGTACCAGGTGAACTCATAT+TGG | 0.455273 | tig0034911:-23014 | None:intergenic |
| GGAGAATTTATGGAGGAAAT+CGG | 0.458292 | tig0034911:-23182 | None:intergenic |
| TAGGCGCGGCGTATTCCCTT+TGG | 0.468628 | tig0034911:+23125 | Msa1453860:CDS |
| CATTTCCTTCTCTTCCACTT+TGG | 0.469790 | tig0034911:+22991 | Msa1453860:CDS |
| AAGGAAATGGTAGAGAGATT+CGG | 0.474409 | tig0034911:-22977 | None:intergenic |
| CCGATAAAGCTGCTAGTACC+AGG | 0.489275 | tig0034911:-23028 | None:intergenic |
| GTAGCCACATTAGCAGCGCT+TGG | 0.489321 | tig0034911:+23094 | Msa1453860:CDS |
| GGTGGGACCGAGAGCAAGAA+AGG | 0.489559 | tig0034911:+23502 | Msa1453860:CDS |
| CATAAATTCTCCGATCCAAA+TGG | 0.490582 | tig0034911:+23193 | Msa1453860:CDS |
| TGGCTGAGCCGTATCTTGCT+GGG | 0.491654 | tig0034911:+23481 | Msa1453860:CDS |
| GACCGAGAGCAAGAAAGGAC+GGG | 0.491917 | tig0034911:+23507 | Msa1453860:CDS |
| TTGGAAAGCTCCTACTGAGA+TGG | 0.492362 | tig0034911:-23059 | None:intergenic |
| GAGCGACTCATGAATGCTGC+CGG | 0.495040 | tig0034911:+23577 | Msa1453860:CDS |
| AACTTCTCTGCCATTTGGAT+CGG | 0.499588 | tig0034911:-23203 | None:intergenic |
| TAGCCACATTAGCAGCGCTT+GGG | 0.509701 | tig0034911:+23095 | Msa1453860:CDS |
| CATCCCAAGCGCTGCTAATG+TGG | 0.509853 | tig0034911:-23098 | None:intergenic |
| GGACCGAGAGCAAGAAAGGA+CGG | 0.512094 | tig0034911:+23506 | Msa1453860:CDS |
| ACCTTACCTTCACCATGATA+CGG | 0.518013 | tig0034911:+23661 | Msa1453860:CDS |
| ACTCATGAATGCTGCCGGGT+TGG | 0.526859 | tig0034911:+23582 | Msa1453860:CDS |
| TGGAAAGCTCCTACTGAGAT+GGG | 0.532780 | tig0034911:-23058 | None:intergenic |
| TCCGTATCATGGTGAAGGTA+AGG | 0.538798 | tig0034911:-23662 | None:intergenic |
| CACACGATTATATAGCCAAA+GGG | 0.551184 | tig0034911:-23140 | None:intergenic |
| TGAGCCGTATCTTGCTGGGT+GGG | 0.552172 | tig0034911:+23485 | Msa1453860:CDS |
| ACCGAGAGCAAGAAAGGACG+GGG | 0.558920 | tig0034911:+23508 | Msa1453860:CDS |
| CGGTCCCACCCAGCAAGATA+CGG | 0.559998 | tig0034911:-23489 | None:intergenic |
| ATTGGCCAAAGTGGAAGAGA+AGG | 0.560732 | tig0034911:-22996 | None:intergenic |
| AGAACTTGGAGTCCGTATCA+TGG | 0.567784 | tig0034911:-23673 | None:intergenic |
| CAAAGTGGAAGAGAAGGAAA+TGG | 0.570201 | tig0034911:-22990 | None:intergenic |
| TGAACTCATATTGGCCAAAG+TGG | 0.575500 | tig0034911:-23005 | None:intergenic |
| CCTTTGGCTATATAATCGTG+TGG | 0.579601 | tig0034911:+23141 | Msa1453860:CDS |
| AGCGACTCATGAATGCTGCC+GGG | 0.590061 | tig0034911:+23578 | Msa1453860:CDS |
| AGTTATTGGCTCGTCCAACC+CGG | 0.599786 | tig0034911:-23596 | None:intergenic |
| CCGAGAGCAAGAAAGGACGG+GGG | 0.605735 | tig0034911:+23509 | Msa1453860:CDS |
| TTGGCCAATATGAGTTCACC+TGG | 0.605951 | tig0034911:+23010 | Msa1453860:CDS |
| GGGGAATTTCCCATCTCAGT+AGG | 0.607104 | tig0034911:+23049 | Msa1453860:CDS |
| TCAACTGTCCCTCGGAGACA+CGG | 0.609693 | tig0034911:-23552 | None:intergenic |
| TGGAGTCCGTATCATGGTGA+AGG | 0.610039 | tig0034911:-23667 | None:intergenic |
| AGTTCTTATGGCAGAGCGCG+AGG | 0.610368 | tig0034911:+23690 | Msa1453860:CDS |
| GACACGGTCGAGAACATGCA+TGG | 0.621948 | tig0034911:-23536 | None:intergenic |
| CCACACGATTATATAGCCAA+AGG | 0.624841 | tig0034911:-23141 | None:intergenic |
| CGAGAGCAAGAAAGGACGGG+GGG | 0.629548 | tig0034911:+23510 | Msa1453860:CDS |
| TGTTCTCGACCGTGTCTCCG+AGG | 0.631514 | tig0034911:+23543 | Msa1453860:CDS |
| CTGAGCCGTATCTTGCTGGG+TGG | 0.641566 | tig0034911:+23484 | Msa1453860:CDS |
| GTTCTCGACCGTGTCTCCGA+GGG | 0.655495 | tig0034911:+23544 | Msa1453860:CDS |
| TGGTACTAGCAGCTTTATCG+GGG | 0.656393 | tig0034911:+23030 | Msa1453860:CDS |
| AATGGTAGAGAGATTCGGCA+TGG | 0.678484 | tig0034911:-22972 | None:intergenic |
| TTGGATCGGAGAATTTATGG+AGG | 0.680463 | tig0034911:-23189 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGACTTTACTAAAAAAATA+AGG | + | tig0034911:23433-23452 | Msa1453860:CDS | 15.0% |
| !!! | AACAAGAAAAGGTATAAATA+TGG | - | tig0034911:23230-23249 | None:intergenic | 20.0% |
| !!! | ATATTTATACCTTTTCTTGT+TGG | + | tig0034911:23229-23248 | Msa1453860:intron | 20.0% |
| !! | ACAGAAATGGATAAAAAAAA+GGG | - | tig0034911:23389-23408 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTTGGTAGTTCAA+CGG | - | tig0034911:23267-23286 | None:intergenic | 25.0% |
| ! | TTGAACTACCAAAGAAAAAA+GGG | + | tig0034911:23267-23286 | Msa1453860:intron | 25.0% |
| ! | AGAAATGGATAAAAAAAAGG+GGG | - | tig0034911:23387-23406 | None:intergenic | 25.0% |
| ! | CAGAAATGGATAAAAAAAAG+GGG | - | tig0034911:23388-23407 | None:intergenic | 25.0% |
| ! | GACAGAAATGGATAAAAAAA+AGG | - | tig0034911:23390-23409 | None:intergenic | 25.0% |
| !! | ATTTCTGTCTTTAGTCTTTA+GGG | + | tig0034911:23401-23420 | Msa1453860:CDS | 25.0% |
| !!! | TTTTTAGTAAAGTCAAGCTT+TGG | - | tig0034911:23429-23448 | None:intergenic | 25.0% |
| ! | TTTATACCTTTTCTTGTTGG+AGG | + | tig0034911:23232-23251 | Msa1453860:intron | 30.0% |
| ! | TTATACCTTTTCTTGTTGGA+GGG | + | tig0034911:23233-23252 | Msa1453860:intron | 30.0% |
| GTTGAACTACCAAAGAAAAA+AGG | + | tig0034911:23266-23285 | Msa1453860:intron | 30.0% | |
| !!! | TTGGTTTACCCTTTTTTCTT+TGG | - | tig0034911:23278-23297 | None:intergenic | 30.0% |
| GAAATGGATAAAAAAAAGGG+GGG | - | tig0034911:23386-23405 | None:intergenic | 30.0% | |
| CTAAAGACTAAAGACAGAAA+TGG | - | tig0034911:23402-23421 | None:intergenic | 30.0% | |
| ! | CATTTCTGTCTTTAGTCTTT+AGG | + | tig0034911:23400-23419 | Msa1453860:CDS | 30.0% |
| AAGGAAATGGTAGAGAGATT+CGG | - | tig0034911:22980-22999 | None:intergenic | 35.0% | |
| !! | TGGCTACTAAGCTATTTCTT+TGG | - | tig0034911:23081-23100 | None:intergenic | 35.0% |
| CACACGATTATATAGCCAAA+GGG | - | tig0034911:23143-23162 | None:intergenic | 35.0% | |
| CTATATAATCGTGTGGTTTC+TGG | + | tig0034911:23148-23167 | Msa1453860:CDS | 35.0% | |
| GGAGAATTTATGGAGGAAAT+CGG | - | tig0034911:23185-23204 | None:intergenic | 35.0% | |
| CATTTGGATCGGAGAATTTA+TGG | - | tig0034911:23195-23214 | None:intergenic | 35.0% | |
| CATAAATTCTCCGATCCAAA+TGG | + | tig0034911:23193-23212 | Msa1453860:CDS | 35.0% | |
| ! | TATACCTTTTCTTGTTGGAG+GGG | + | tig0034911:23234-23253 | Msa1453860:intron | 35.0% |
| CTACAATGTCATGATCACAT+TGG | - | tig0034911:23297-23316 | None:intergenic | 35.0% | |
| CAATGTGATCATGACATTGT+AGG | + | tig0034911:23295-23314 | Msa1453860:intron | 35.0% | |
| CAAAGTGGAAGAGAAGGAAA+TGG | - | tig0034911:22993-23012 | None:intergenic | 40.0% | |
| CATTTCCTTCTCTTCCACTT+TGG | + | tig0034911:22991-23010 | Msa1453860:CDS | 40.0% | |
| TGAACTCATATTGGCCAAAG+TGG | - | tig0034911:23008-23027 | None:intergenic | 40.0% | |
| AGTACCAGGTGAACTCATAT+TGG | - | tig0034911:23017-23036 | None:intergenic | 40.0% | |
| CCACACGATTATATAGCCAA+AGG | - | tig0034911:23144-23163 | None:intergenic | 40.0% | |
| CCTTTGGCTATATAATCGTG+TGG | + | tig0034911:23141-23160 | Msa1453860:CDS | 40.0% | |
| TTGGATCGGAGAATTTATGG+AGG | - | tig0034911:23192-23211 | None:intergenic | 40.0% | |
| ! | AACTTCTCTGCCATTTGGAT+CGG | - | tig0034911:23206-23225 | None:intergenic | 40.0% |
| ATGGAAACTTCTCTGCCATT+TGG | - | tig0034911:23211-23230 | None:intergenic | 40.0% | |
| ! | TTCTTTGGTAGTTCAACGGA+CGG | - | tig0034911:23263-23282 | None:intergenic | 40.0% |
| ACCTTACCTTCACCATGATA+CGG | + | tig0034911:23661-23680 | Msa1453860:CDS | 40.0% | |
| ATACGGACTCCAAGTTCTTA+TGG | + | tig0034911:23678-23697 | Msa1453860:CDS | 40.0% | |
| ATTGGCCAAAGTGGAAGAGA+AGG | - | tig0034911:22999-23018 | None:intergenic | 45.0% | |
| TTGGCCAATATGAGTTCACC+TGG | + | tig0034911:23010-23029 | Msa1453860:CDS | 45.0% | |
| ! | CCTGGTACTAGCAGCTTTAT+CGG | + | tig0034911:23028-23047 | Msa1453860:CDS | 45.0% |
| ! | CTGGTACTAGCAGCTTTATC+GGG | + | tig0034911:23029-23048 | Msa1453860:CDS | 45.0% |
| ! | TGGTACTAGCAGCTTTATCG+GGG | + | tig0034911:23030-23049 | Msa1453860:CDS | 45.0% |
| TGGAAAGCTCCTACTGAGAT+GGG | - | tig0034911:23061-23080 | None:intergenic | 45.0% | |
| TTGGAAAGCTCCTACTGAGA+TGG | - | tig0034911:23062-23081 | None:intergenic | 45.0% | |
| ACATTGTAGGTGCTTGCGAT+GGG | + | tig0034911:23308-23327 | Msa1453860:intron | 45.0% | |
| ATACCACCCAAACCAACTGA+GGG | - | tig0034911:23347-23366 | None:intergenic | 45.0% | |
| TATACCACCCAAACCAACTG+AGG | - | tig0034911:23348-23367 | None:intergenic | 45.0% | |
| TAAAAAAATAAGGCCCGCGC+AGG | + | tig0034911:23443-23462 | Msa1453860:CDS | 45.0% | |
| AAAAAAATAAGGCCCGCGCA+GGG | + | tig0034911:23444-23463 | Msa1453860:CDS | 45.0% | |
| TCCGTATCATGGTGAAGGTA+AGG | - | tig0034911:23665-23684 | None:intergenic | 45.0% | |
| AGAACTTGGAGTCCGTATCA+TGG | - | tig0034911:23676-23695 | None:intergenic | 45.0% | |
| CCGATAAAGCTGCTAGTACC+AGG | - | tig0034911:23031-23050 | None:intergenic | 50.0% | |
| GGGGAATTTCCCATCTCAGT+AGG | + | tig0034911:23049-23068 | Msa1453860:CDS | 50.0% | |
| TAGCCACATTAGCAGCGCTT+GGG | + | tig0034911:23095-23114 | Msa1453860:CDS | 50.0% | |
| ! | GCAGCGCTTGGGATGATTTT+AGG | + | tig0034911:23106-23125 | Msa1453860:CDS | 50.0% |
| ! | GCTTGGGATGATTTTAGGCG+CGG | + | tig0034911:23111-23130 | Msa1453860:CDS | 50.0% |
| GACATTGTAGGTGCTTGCGA+TGG | + | tig0034911:23307-23326 | Msa1453860:intron | 50.0% | |
| CATTGTAGGTGCTTGCGATG+GGG | + | tig0034911:23309-23328 | Msa1453860:intron | 50.0% | |
| ! | CGACTTCCCTCAGTTGGTTT+GGG | + | tig0034911:23338-23357 | Msa1453860:intron | 50.0% |
| AAAAGGGGGGACTTCTGCAA+CGG | - | tig0034911:23373-23392 | None:intergenic | 50.0% | |
| AAAAAATAAGGCCCGCGCAG+GGG | + | tig0034911:23445-23464 | Msa1453860:CDS | 50.0% | |
| !! | AGTTATTGGCTCGTCCAACC+CGG | - | tig0034911:23599-23618 | None:intergenic | 50.0% |
| GCCAATAACTCGAACGCGTT+CGG | + | tig0034911:23609-23628 | Msa1453860:CDS | 50.0% | |
| ! | ACCGAACGCGTTCGAGTTAT+TGG | - | tig0034911:23613-23632 | None:intergenic | 50.0% |
| TGGAGTCCGTATCATGGTGA+AGG | - | tig0034911:23670-23689 | None:intergenic | 50.0% | |
| GTAGCCACATTAGCAGCGCT+TGG | + | tig0034911:23094-23113 | Msa1453860:CDS | 55.0% | |
| ! | CATCCCAAGCGCTGCTAATG+TGG | - | tig0034911:23101-23120 | None:intergenic | 55.0% |
| GTCGCCCCTCCAACAAGAAA+AGG | - | tig0034911:23241-23260 | None:intergenic | 55.0% | |
| GCGACTTCCCTCAGTTGGTT+TGG | + | tig0034911:23337-23356 | Msa1453860:intron | 55.0% | |
| !! | CTTCCCTCAGTTGGTTTGGG+TGG | + | tig0034911:23341-23360 | Msa1453860:intron | 55.0% |
| AAAGGGGGGACTTCTGCAAC+GGG | - | tig0034911:23372-23391 | None:intergenic | 55.0% | |
| TTGGCTGAGCCGTATCTTGC+TGG | + | tig0034911:23480-23499 | Msa1453860:CDS | 55.0% | |
| TGGCTGAGCCGTATCTTGCT+GGG | + | tig0034911:23481-23500 | Msa1453860:CDS | 55.0% | |
| TGAGCCGTATCTTGCTGGGT+GGG | + | tig0034911:23485-23504 | Msa1453860:CDS | 55.0% | |
| GGACCGAGAGCAAGAAAGGA+CGG | + | tig0034911:23506-23525 | Msa1453860:CDS | 55.0% | |
| GACCGAGAGCAAGAAAGGAC+GGG | + | tig0034911:23507-23526 | Msa1453860:CDS | 55.0% | |
| ACCGAGAGCAAGAAAGGACG+GGG | + | tig0034911:23508-23527 | Msa1453860:CDS | 55.0% | |
| GACACGGTCGAGAACATGCA+TGG | - | tig0034911:23539-23558 | None:intergenic | 55.0% | |
| TCAACTGTCCCTCGGAGACA+CGG | - | tig0034911:23555-23574 | None:intergenic | 55.0% | |
| TCGCTCGTTCAACTGTCCCT+CGG | - | tig0034911:23563-23582 | None:intergenic | 55.0% | |
| GAGCGACTCATGAATGCTGC+CGG | + | tig0034911:23577-23596 | Msa1453860:CDS | 55.0% | |
| AGCGACTCATGAATGCTGCC+GGG | + | tig0034911:23578-23597 | Msa1453860:CDS | 55.0% | |
| ACTCATGAATGCTGCCGGGT+TGG | + | tig0034911:23582-23601 | Msa1453860:CDS | 55.0% | |
| CGCGCTCTGCCATAAGAACT+TGG | - | tig0034911:23690-23709 | None:intergenic | 55.0% | |
| AGTTCTTATGGCAGAGCGCG+AGG | + | tig0034911:23690-23709 | Msa1453860:CDS | 55.0% | |
| TAGGCGCGGCGTATTCCCTT+TGG | + | tig0034911:23125-23144 | Msa1453860:CDS | 60.0% | |
| TGTAGGTGCTTGCGATGGGG+CGG | + | tig0034911:23312-23331 | Msa1453860:intron | 60.0% | |
| CGGATGCGACTTCCCTCAGT+TGG | + | tig0034911:23332-23351 | Msa1453860:intron | 60.0% | |
| !!! | GCAGGGGCGCTCACGTTTTT+TGG | + | tig0034911:23461-23480 | Msa1453860:CDS | 60.0% |
| CTGAGCCGTATCTTGCTGGG+TGG | + | tig0034911:23484-23503 | Msa1453860:CDS | 60.0% | |
| CGGTCCCACCCAGCAAGATA+CGG | - | tig0034911:23492-23511 | None:intergenic | 60.0% | |
| GGTGGGACCGAGAGCAAGAA+AGG | + | tig0034911:23502-23521 | Msa1453860:CDS | 60.0% | |
| CCCCCGTCCTTTCTTGCTCT+CGG | - | tig0034911:23512-23531 | None:intergenic | 60.0% | |
| CCGAGAGCAAGAAAGGACGG+GGG | + | tig0034911:23509-23528 | Msa1453860:CDS | 60.0% | |
| CGAGAGCAAGAAAGGACGGG+GGG | + | tig0034911:23510-23529 | Msa1453860:CDS | 60.0% | |
| TGTTCTCGACCGTGTCTCCG+AGG | + | tig0034911:23543-23562 | Msa1453860:CDS | 60.0% | |
| GTTCTCGACCGTGTCTCCGA+GGG | + | tig0034911:23544-23563 | Msa1453860:CDS | 60.0% | |
| AAAACGTGAGCGCCCCTGCG+CGG | - | tig0034911:23460-23479 | None:intergenic | 65.0% | |
| AAACGTGAGCGCCCCTGCGC+GGG | - | tig0034911:23459-23478 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0034911 | gene | 22974 | 23719 | 22974 | ID=Msa1453860;Name=Msa1453860 |
| tig0034911 | mRNA | 22974 | 23719 | 22974 | ID=Msa1453860-mRNA-1;Parent=Msa1453860;Name=Msa1453860-mRNA-1;_AED=0.25;_eAED=0.26;_QI=0|0|0|1|0|0.5|2|0|199 |
| tig0034911 | exon | 22974 | 23222 | 22974 | ID=Msa1453860-mRNA-1:exon:19337;Parent=Msa1453860-mRNA-1 |
| tig0034911 | exon | 23369 | 23719 | 23369 | ID=Msa1453860-mRNA-1:exon:19338;Parent=Msa1453860-mRNA-1 |
| tig0034911 | CDS | 22974 | 23222 | 22974 | ID=Msa1453860-mRNA-1:cds;Parent=Msa1453860-mRNA-1 |
| tig0034911 | CDS | 23369 | 23719 | 23369 | ID=Msa1453860-mRNA-1:cds;Parent=Msa1453860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
