AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0069500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 81 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGAGCGCTTATGTAATA+TGG 0.207988 1_2:+37969359 Msa0069500:CDS
CGCTCAGTCTTTGCAACGGC+TGG 0.225653 1_2:+37969241 Msa0069500:CDS
ATAAGCGCTCTTGGGTGGGC+TGG 0.307064 1_2:-37969350 None:intergenic
GCCCCTTCTCAAAGATTTGA+TGG 0.329206 1_2:+37969321 Msa0069500:CDS
GAAGAGTCTGGTCTGAATTC+AGG 0.358398 1_2:-37968526 None:intergenic
CCATATTACATAAGCGCTCT+TGG 0.366917 1_2:-37969359 None:intergenic
ATGGCTGGAAACAATCCTTA+TGG 0.374342 1_2:+37969388 Msa0069500:CDS
TCAACGGATCCTCCGCGCTC+CGG 0.380707 1_2:+37968110 Msa0069500:CDS
GGGGATGCGATTAGCCAAGC+TGG 0.383932 1_2:-37969187 None:intergenic
CCAGGACAACTGAGATCTTC+CGG 0.406192 1_2:-37968578 None:intergenic
CAACGGATCCTCCGCGCTCC+GGG 0.415376 1_2:+37968111 Msa0069500:CDS
CGGCTTTGTTTGCCCCAGCT+TGG 0.424380 1_2:+37969173 Msa0069500:CDS
TAAGCGCTCTTGGGTGGGCT+GGG 0.429950 1_2:-37969349 None:intergenic
TTTATGGTCGGCGTGGCGAT+AGG 0.434948 1_2:-37969286 None:intergenic
GCTCAGTCTTTGCAACGGCT+GGG 0.440045 1_2:+37969242 Msa0069500:CDS
GATCTTCCGGTCTGCGCGCG+TGG 0.445805 1_2:-37968565 None:intergenic
AGGCCTTCGCATTCCTAATC+CGG 0.446913 1_2:+37969138 Msa0069500:CDS
CGACCATAAAATACGAGATT+GGG 0.452501 1_2:+37969299 Msa0069500:CDS
CATTAATGAACCATCATTGA+TGG 0.457585 1_2:+37968343 Msa0069500:CDS
AGCTCAAATAAAGAAGAGTC+TGG 0.460879 1_2:-37968538 None:intergenic
CATATTACATAAGCGCTCTT+GGG 0.461145 1_2:-37969358 None:intergenic
CTTCATTTGATTCCGACGGC+CGG 0.461330 1_2:-37968495 None:intergenic
CCGGAAGATCTCAGTTGTCC+TGG 0.472614 1_2:+37968578 Msa0069500:CDS
ATCTTATTCGTAGTTGGGAA+GGG 0.474175 1_2:+37968298 Msa0069500:intron
CTCAGTCTTTGCAACGGCTG+GGG 0.478154 1_2:+37969243 Msa0069500:CDS
GTCTGGTCTGAATTCAGGCC+CGG 0.488593 1_2:-37968521 None:intergenic
GGGCGAGAATGTCGTTGCGC+GGG 0.488700 1_2:-37969207 None:intergenic
GCCCCTTCATTTGATTCCGA+CGG 0.492309 1_2:-37968499 None:intergenic
TTCTCAAAGATTTGATGGAA+TGG 0.495647 1_2:+37969326 Msa0069500:CDS
TTCGCATTCCTAATCCGGTA+GGG 0.500104 1_2:+37969143 Msa0069500:CDS
CGGCCGTCGGAATCAAATGA+AGG 0.500343 1_2:+37968496 Msa0069500:CDS
CAAGAGCGCTTATGTAATAT+GGG 0.501614 1_2:+37969360 Msa0069500:CDS
CTGCTCCCACGCGCGCAGAC+CGG 0.504541 1_2:+37968559 Msa0069500:CDS
CCGACCATAAAATACGAGAT+TGG 0.509360 1_2:+37969298 Msa0069500:CDS
AGTCTTTGCAACGGCTGGGG+AGG 0.513121 1_2:+37969246 Msa0069500:CDS
TCGGAATCAAATGAAGGGGC+CGG 0.516252 1_2:+37968502 Msa0069500:CDS
ATCTTCCGGTCTGCGCGCGT+GGG 0.517869 1_2:-37968564 None:intergenic
CGGAATCAAATGAAGGGGCC+GGG 0.520915 1_2:+37968503 Msa0069500:CDS
GTAATATGGGAACTCATGGC+TGG 0.521689 1_2:+37969373 Msa0069500:CDS
GGCCGTCGGAATCAAATGAA+GGG 0.522782 1_2:+37968497 Msa0069500:CDS
GGGATGCGATTAGCCAAGCT+GGG 0.523174 1_2:-37969186 None:intergenic
TTCCATCAAATCTTTGAGAA+GGG 0.523314 1_2:-37969323 None:intergenic
GATCAATTCGACTCAAGGTC+CGG 0.525223 1_2:+37968382 Msa0069500:CDS
AGACTGAGCGAGAACGGTAA+GGG 0.526507 1_2:-37969228 None:intergenic
ATTACATAAGCGCTCTTGGG+TGG 0.534053 1_2:-37969355 None:intergenic
TACCGGATATCAAAACCATA+AGG 0.534728 1_2:-37969403 None:intergenic
GATCTTATTCGTAGTTGGGA+AGG 0.535610 1_2:+37968297 Msa0069500:intron
CTGGGGCAAACAAAGCCGTC+CGG 0.536581 1_2:-37969168 None:intergenic
AGAGTGTCTGTTGTATCGGT+AGG 0.538617 1_2:-37968088 None:intergenic
GGGGAAGGAGTCTAAATCAA+TGG 0.539091 1_2:+37968319 Msa0069500:CDS
GTTGAGAGTGTCTGTTGTAT+CGG 0.539467 1_2:-37968092 None:intergenic
AAGACTGAGCGAGAACGGTA+AGG 0.542206 1_2:-37969229 None:intergenic
ATTCCATCAAATCTTTGAGA+AGG 0.544607 1_2:-37969324 None:intergenic
ATGATATCTATGCCGGCCGT+CGG 0.544608 1_2:+37968483 Msa0069500:CDS
TCGCATTCCTAATCCGGTAG+GGG 0.545017 1_2:+37969144 Msa0069500:CDS
CTTCGCATTCCTAATCCGGT+AGG 0.547950 1_2:+37969142 Msa0069500:CDS
TCTTATTCGTAGTTGGGAAG+GGG 0.551343 1_2:+37968299 Msa0069500:intron
TGTGCAACGTCCATCAATGA+TGG 0.565186 1_2:-37968353 None:intergenic
TCCATCAAATCTTTGAGAAG+GGG 0.566678 1_2:-37969322 None:intergenic
ACAGAAGGAAGAGGTATGCC+CGG 0.571672 1_2:-37968129 None:intergenic
TTGCAAAGACTGAGCGAGAA+CGG 0.572814 1_2:-37969234 None:intergenic
TTATGTAATATGGGAACTCA+TGG 0.573781 1_2:+37969369 Msa0069500:CDS
TCTACGTACTTGTCAAGTCC+AGG 0.574108 1_2:-37968596 None:intergenic
TTACATAAGCGCTCTTGGGT+GGG 0.574541 1_2:-37969354 None:intergenic
GAAAGACGCACAGAAGGAAG+AGG 0.578029 1_2:-37968138 None:intergenic
CTTATTCGTAGTTGGGAAGG+GGG 0.583948 1_2:+37968300 Msa0069500:intron
GACACGATCAATTCGACTCA+AGG 0.587285 1_2:+37968377 Msa0069500:CDS
GAGTGTCTGTTGTATCGGTA+GGG 0.597257 1_2:-37968087 None:intergenic
GGCGAGAATGTCGTTGCGCG+GGG 0.597805 1_2:-37969206 None:intergenic
GGGTCTCATGATATCTATGC+CGG 0.603272 1_2:+37968476 Msa0069500:CDS
TAAGCAACTTCTATTAGCGC+CGG 0.609524 1_2:-37968401 None:intergenic
CGCATTCCTAATCCGGTAGG+GGG 0.612148 1_2:+37969145 Msa0069500:CDS
GGGGCGAGAATGTCGTTGCG+CGG 0.612969 1_2:-37969208 None:intergenic
GACTGAGCGAGAACGGTAAG+GGG 0.616195 1_2:-37969227 None:intergenic
TTCTCGCTCAGTCTTTGCAA+CGG 0.627025 1_2:+37969237 Msa0069500:CDS
GCCGTCGGAATCAAATGAAG+GGG 0.628560 1_2:+37968498 Msa0069500:CDS
GAAGAGGTATGCCCGGAGCG+CGG 0.638294 1_2:-37968122 None:intergenic
CTACCGGATTAGGAATGCGA+AGG 0.645121 1_2:-37969141 None:intergenic
GAGGTATGCCCGGAGCGCGG+AGG 0.657303 1_2:-37968119 None:intergenic
GGATGCGATTAGCCAAGCTG+GGG 0.657540 1_2:-37969185 None:intergenic
GATACAACAGACACTCTCAA+CGG 0.713196 1_2:+37968094 Msa0069500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGCTTTATTTAAGAGATAAT+GGG + chr1_2:37968221-37968240 Msa0069500:intron 20.0%
!!! AGCTTTATTTAAGAGATAAT+GGG + chr1_2:37968221-37968240 Msa0069500:intron 20.0%
!!! GAGCTTTATTTAAGAGATAA+TGG + chr1_2:37968220-37968239 Msa0069500:intron 25.0%
!!! GCTTTATTTAAGAGATAATG+GGG + chr1_2:37968222-37968241 Msa0069500:intron 25.0%
! AAAAAAACCAAGAACGAAAA+CGG - chr1_2:37968265-37968284 None:intergenic 25.0%
!!! TTTTCGTTCTTGGTTTTTTT+GGG + chr1_2:37968265-37968284 Msa0069500:intron 25.0%
!!! TTTTTTTAGGTCGTGTAATA+GGG + chr1_2:37968905-37968924 Msa0069500:intron 25.0%
!!! CTTTTTTAGCATTTTGTTTG+AGG - chr1_2:37969035-37969054 None:intergenic 25.0%
! CTCAAACAAAATGCTAAAAA+AGG + chr1_2:37969033-37969052 Msa0069500:intron 25.0%
! ACAAAATGCTAAAAAAGGAT+AGG + chr1_2:37969038-37969057 Msa0069500:intron 25.0%
!!! GAGCTTTATTTAAGAGATAA+TGG + chr1_2:37968220-37968239 Msa0069500:intron 25.0%
!!! GCTTTATTTAAGAGATAATG+GGG + chr1_2:37968222-37968241 Msa0069500:intron 25.0%
! AAAAAAACCAAGAACGAAAA+CGG - chr1_2:37968265-37968284 None:intergenic 25.0%
!!! TTTTCGTTCTTGGTTTTTTT+GGG + chr1_2:37968265-37968284 Msa0069500:intron 25.0%
!!! TTTTTTTAGGTCGTGTAATA+GGG + chr1_2:37968905-37968924 Msa0069500:intron 25.0%
!!! CTTTTTTAGCATTTTGTTTG+AGG - chr1_2:37969035-37969054 None:intergenic 25.0%
! CTCAAACAAAATGCTAAAAA+AGG + chr1_2:37969033-37969052 Msa0069500:intron 25.0%
! ACAAAATGCTAAAAAAGGAT+AGG + chr1_2:37969038-37969057 Msa0069500:intron 25.0%
!! GTTTTCGTTCTTGGTTTTTT+TGG + chr1_2:37968264-37968283 Msa0069500:intron 30.0%
!!! TTTCGTTCTTGGTTTTTTTG+GGG + chr1_2:37968266-37968285 Msa0069500:intron 30.0%
CATTAATGAACCATCATTGA+TGG + chr1_2:37968343-37968362 Msa0069500:CDS 30.0%
!!! GCTTTTTTCGTAGTAATAGT+GGG + chr1_2:37968452-37968471 Msa0069500:intron 30.0%
TCTTTCCATTGATAGATAAG+AGG + chr1_2:37968686-37968705 Msa0069500:intron 30.0%
CTTTCCATTGATAGATAAGA+GGG + chr1_2:37968687-37968706 Msa0069500:intron 30.0%
! ACCTTTAAGAGTATGTTCAA+GGG - chr1_2:37968719-37968738 None:intergenic 30.0%
! AACCTTTAAGAGTATGTTCA+AGG - chr1_2:37968720-37968739 None:intergenic 30.0%
TGAACATACTCTTAAAGGTT+AGG + chr1_2:37968720-37968739 Msa0069500:intron 30.0%
AAAGGCTTAGATTTCTTCTA+AGG + chr1_2:37968864-37968883 Msa0069500:intron 30.0%
AAGGCTTAGATTTCTTCTAA+GGG + chr1_2:37968865-37968884 Msa0069500:intron 30.0%
CTATTACACGACCTAAAAAA+AGG - chr1_2:37968906-37968925 None:intergenic 30.0%
!!! CTTTTTTTAGGTCGTGTAAT+AGG + chr1_2:37968904-37968923 Msa0069500:intron 30.0%
AGAATGAAATGCAGAAATAC+GGG - chr1_2:37969000-37969019 None:intergenic 30.0%
GAGAATGAAATGCAGAAATA+CGG - chr1_2:37969001-37969020 None:intergenic 30.0%
TCTGCATTTCATTCTCTATT+CGG + chr1_2:37969005-37969024 Msa0069500:intron 30.0%
!! TTTTAGCATTTTGTTTGAGG+CGG - chr1_2:37969032-37969051 None:intergenic 30.0%
! TTCCATCAAATCTTTGAGAA+GGG - chr1_2:37969326-37969345 None:intergenic 30.0%
! ATTCCATCAAATCTTTGAGA+AGG - chr1_2:37969327-37969346 None:intergenic 30.0%
TTCTCAAAGATTTGATGGAA+TGG + chr1_2:37969326-37969345 Msa0069500:CDS 30.0%
TTATGTAATATGGGAACTCA+TGG + chr1_2:37969369-37969388 Msa0069500:CDS 30.0%
!!! ATCCTTATGGTTTTGATATC+CGG + chr1_2:37969401-37969420 Msa0069500:CDS 30.0%
!! GTTTTCGTTCTTGGTTTTTT+TGG + chr1_2:37968264-37968283 Msa0069500:intron 30.0%
!!! TTTCGTTCTTGGTTTTTTTG+GGG + chr1_2:37968266-37968285 Msa0069500:intron 30.0%
CATTAATGAACCATCATTGA+TGG + chr1_2:37968343-37968362 Msa0069500:CDS 30.0%
!!! GCTTTTTTCGTAGTAATAGT+GGG + chr1_2:37968452-37968471 Msa0069500:intron 30.0%
TCTTTCCATTGATAGATAAG+AGG + chr1_2:37968686-37968705 Msa0069500:intron 30.0%
CTTTCCATTGATAGATAAGA+GGG + chr1_2:37968687-37968706 Msa0069500:intron 30.0%
! ACCTTTAAGAGTATGTTCAA+GGG - chr1_2:37968719-37968738 None:intergenic 30.0%
! AACCTTTAAGAGTATGTTCA+AGG - chr1_2:37968720-37968739 None:intergenic 30.0%
TGAACATACTCTTAAAGGTT+AGG + chr1_2:37968720-37968739 Msa0069500:intron 30.0%
AAAGGCTTAGATTTCTTCTA+AGG + chr1_2:37968864-37968883 Msa0069500:intron 30.0%
AAGGCTTAGATTTCTTCTAA+GGG + chr1_2:37968865-37968884 Msa0069500:intron 30.0%
CTATTACACGACCTAAAAAA+AGG - chr1_2:37968906-37968925 None:intergenic 30.0%
!!! CTTTTTTTAGGTCGTGTAAT+AGG + chr1_2:37968904-37968923 Msa0069500:intron 30.0%
AGAATGAAATGCAGAAATAC+GGG - chr1_2:37969000-37969019 None:intergenic 30.0%
GAGAATGAAATGCAGAAATA+CGG - chr1_2:37969001-37969020 None:intergenic 30.0%
TCTGCATTTCATTCTCTATT+CGG + chr1_2:37969005-37969024 Msa0069500:intron 30.0%
!! TTTTAGCATTTTGTTTGAGG+CGG - chr1_2:37969032-37969051 None:intergenic 30.0%
! TTCCATCAAATCTTTGAGAA+GGG - chr1_2:37969326-37969345 None:intergenic 30.0%
! ATTCCATCAAATCTTTGAGA+AGG - chr1_2:37969327-37969346 None:intergenic 30.0%
TTCTCAAAGATTTGATGGAA+TGG + chr1_2:37969326-37969345 Msa0069500:CDS 30.0%
TTATGTAATATGGGAACTCA+TGG + chr1_2:37969369-37969388 Msa0069500:CDS 30.0%
!!! ATCCTTATGGTTTTGATATC+CGG + chr1_2:37969401-37969420 Msa0069500:CDS 30.0%
TCTCGATCTTATTCGTAGTT+GGG + chr1_2:37968293-37968312 Msa0069500:intron 35.0%
ATCTTATTCGTAGTTGGGAA+GGG + chr1_2:37968298-37968317 Msa0069500:intron 35.0%
TCTCCTAGTTAGAAGGAAAA+AGG + chr1_2:37968425-37968444 Msa0069500:intron 35.0%
TAGTTAGAAGGAAAAAGGCA+GGG + chr1_2:37968430-37968449 Msa0069500:intron 35.0%
!!! GGCTTTTTTCGTAGTAATAG+TGG + chr1_2:37968451-37968470 Msa0069500:intron 35.0%
!! TTTTTCGTAGTAATAGTGGG+CGG + chr1_2:37968455-37968474 Msa0069500:intron 35.0%
AGCTCAAATAAAGAAGAGTC+TGG - chr1_2:37968541-37968560 None:intergenic 35.0%
! AGTCTCAATCGATCTTTTCT+AGG + chr1_2:37968642-37968661 Msa0069500:intron 35.0%
! TTTAAGAGTATGTTCAAGGG+GGG - chr1_2:37968716-37968735 None:intergenic 35.0%
! CTTTAAGAGTATGTTCAAGG+GGG - chr1_2:37968717-37968736 None:intergenic 35.0%
! CCTTTAAGAGTATGTTCAAG+GGG - chr1_2:37968718-37968737 None:intergenic 35.0%
TTTCTATCTATATGACCTCC+GGG - chr1_2:37968785-37968804 None:intergenic 35.0%
GTTTCTATCTATATGACCTC+CGG - chr1_2:37968786-37968805 None:intergenic 35.0%
AGGTCATATAGATAGAAACC+CGG + chr1_2:37968787-37968806 Msa0069500:intron 35.0%
!!! ACAGCAAGCTACCTTTTTTT+AGG + chr1_2:37968892-37968911 Msa0069500:intron 35.0%
!! TTTAGCATTTTGTTTGAGGC+GGG - chr1_2:37969031-37969050 None:intergenic 35.0%
! CCAATCTCGTATTTTATGGT+CGG - chr1_2:37969301-37969320 None:intergenic 35.0%
CGACCATAAAATACGAGATT+GGG + chr1_2:37969299-37969318 Msa0069500:CDS 35.0%
! TCCATCAAATCTTTGAGAAG+GGG - chr1_2:37969325-37969344 None:intergenic 35.0%
CATATTACATAAGCGCTCTT+GGG - chr1_2:37969361-37969380 None:intergenic 35.0%
!! CAAGAGCGCTTATGTAATAT+GGG + chr1_2:37969360-37969379 Msa0069500:CDS 35.0%
TACCGGATATCAAAACCATA+AGG - chr1_2:37969406-37969425 None:intergenic 35.0%
!!! TTATGGTTTTGATATCCGGT+AGG + chr1_2:37969405-37969424 Msa0069500:CDS 35.0%
!!! TATGGTTTTGATATCCGGTA+GGG + chr1_2:37969406-37969425 Msa0069500:CDS 35.0%
TCTCGATCTTATTCGTAGTT+GGG + chr1_2:37968293-37968312 Msa0069500:intron 35.0%
ATCTTATTCGTAGTTGGGAA+GGG + chr1_2:37968298-37968317 Msa0069500:intron 35.0%
TCTCCTAGTTAGAAGGAAAA+AGG + chr1_2:37968425-37968444 Msa0069500:intron 35.0%
TAGTTAGAAGGAAAAAGGCA+GGG + chr1_2:37968430-37968449 Msa0069500:intron 35.0%
!!! GGCTTTTTTCGTAGTAATAG+TGG + chr1_2:37968451-37968470 Msa0069500:intron 35.0%
!! TTTTTCGTAGTAATAGTGGG+CGG + chr1_2:37968455-37968474 Msa0069500:intron 35.0%
AGCTCAAATAAAGAAGAGTC+TGG - chr1_2:37968541-37968560 None:intergenic 35.0%
! AGTCTCAATCGATCTTTTCT+AGG + chr1_2:37968642-37968661 Msa0069500:intron 35.0%
! TTTAAGAGTATGTTCAAGGG+GGG - chr1_2:37968716-37968735 None:intergenic 35.0%
! CTTTAAGAGTATGTTCAAGG+GGG - chr1_2:37968717-37968736 None:intergenic 35.0%
! CCTTTAAGAGTATGTTCAAG+GGG - chr1_2:37968718-37968737 None:intergenic 35.0%
TTTCTATCTATATGACCTCC+GGG - chr1_2:37968785-37968804 None:intergenic 35.0%
GTTTCTATCTATATGACCTC+CGG - chr1_2:37968786-37968805 None:intergenic 35.0%
AGGTCATATAGATAGAAACC+CGG + chr1_2:37968787-37968806 Msa0069500:intron 35.0%
!!! ACAGCAAGCTACCTTTTTTT+AGG + chr1_2:37968892-37968911 Msa0069500:intron 35.0%
!! TTTAGCATTTTGTTTGAGGC+GGG - chr1_2:37969031-37969050 None:intergenic 35.0%
! CCAATCTCGTATTTTATGGT+CGG - chr1_2:37969301-37969320 None:intergenic 35.0%
CGACCATAAAATACGAGATT+GGG + chr1_2:37969299-37969318 Msa0069500:CDS 35.0%
! TCCATCAAATCTTTGAGAAG+GGG - chr1_2:37969325-37969344 None:intergenic 35.0%
CATATTACATAAGCGCTCTT+GGG - chr1_2:37969361-37969380 None:intergenic 35.0%
!! CAAGAGCGCTTATGTAATAT+GGG + chr1_2:37969360-37969379 Msa0069500:CDS 35.0%
TACCGGATATCAAAACCATA+AGG - chr1_2:37969406-37969425 None:intergenic 35.0%
!! GTTGAGAGTGTCTGTTGTAT+CGG - chr1_2:37968095-37968114 None:intergenic 40.0%
GATACAACAGACACTCTCAA+CGG + chr1_2:37968094-37968113 Msa0069500:CDS 40.0%
! ATAATGGGGAGTGAATCGAA+AGG + chr1_2:37968236-37968255 Msa0069500:intron 40.0%
CAACTACGAATAAGATCGAG+AGG - chr1_2:37968294-37968313 None:intergenic 40.0%
CTCTCGATCTTATTCGTAGT+TGG + chr1_2:37968292-37968311 Msa0069500:intron 40.0%
GATCTTATTCGTAGTTGGGA+AGG + chr1_2:37968297-37968316 Msa0069500:intron 40.0%
TCTTATTCGTAGTTGGGAAG+GGG + chr1_2:37968299-37968318 Msa0069500:intron 40.0%
TAAGCAACTTCTATTAGCGC+CGG - chr1_2:37968404-37968423 None:intergenic 40.0%
TGCTTACTCTCCTAGTTAGA+AGG + chr1_2:37968418-37968437 Msa0069500:intron 40.0%
! CTGCCTTTTTCCTTCTAACT+AGG - chr1_2:37968431-37968450 None:intergenic 40.0%
CTAGTTAGAAGGAAAAAGGC+AGG + chr1_2:37968429-37968448 Msa0069500:intron 40.0%
!!! TTTTCGTAGTAATAGTGGGC+GGG + chr1_2:37968456-37968475 Msa0069500:intron 40.0%
AAGTACGTAGAGATCTTCGT+GGG + chr1_2:37968608-37968627 Msa0069500:intron 40.0%
! TTAAGAGTATGTTCAAGGGG+GGG - chr1_2:37968715-37968734 None:intergenic 40.0%
CCCCTTGAACATACTCTTAA+AGG + chr1_2:37968715-37968734 Msa0069500:intron 40.0%
AAAGTAAACCTCTTCCGTAG+AGG - chr1_2:37968756-37968775 None:intergenic 40.0%
!! TTTTAGGTCGTGTAATAGGG+AGG + chr1_2:37968908-37968927 Msa0069500:intron 40.0%
CTCGAAAGCCTTTAGTACTT+CGG + chr1_2:37968938-37968957 Msa0069500:intron 40.0%
AAAGCCTTTAGTACTTCGGT+AGG + chr1_2:37968942-37968961 Msa0069500:intron 40.0%
AAGCCTTTAGTACTTCGGTA+GGG + chr1_2:37968943-37968962 Msa0069500:intron 40.0%
! AGAGTTCCAAACCGGTTTAA+GGG - chr1_2:37968976-37968995 None:intergenic 40.0%
! AAGAGTTCCAAACCGGTTTA+AGG - chr1_2:37968977-37968996 None:intergenic 40.0%
TGATTCGAAGTCACTACGAA+AGG + chr1_2:37969066-37969085 Msa0069500:intron 40.0%
GATTCGAAGTCACTACGAAA+GGG + chr1_2:37969067-37969086 Msa0069500:intron 40.0%
! AGCATAGCTCTTTATTTCCC+CGG + chr1_2:37969099-37969118 Msa0069500:intron 40.0%
CCGACCATAAAATACGAGAT+TGG + chr1_2:37969298-37969317 Msa0069500:CDS 40.0%
CCATATTACATAAGCGCTCT+TGG - chr1_2:37969362-37969381 None:intergenic 40.0%
!! CCAAGAGCGCTTATGTAATA+TGG + chr1_2:37969359-37969378 Msa0069500:CDS 40.0%
ATGGCTGGAAACAATCCTTA+TGG + chr1_2:37969388-37969407 Msa0069500:CDS 40.0%
!! GTTGAGAGTGTCTGTTGTAT+CGG - chr1_2:37968095-37968114 None:intergenic 40.0%
GATACAACAGACACTCTCAA+CGG + chr1_2:37968094-37968113 Msa0069500:CDS 40.0%
! ATAATGGGGAGTGAATCGAA+AGG + chr1_2:37968236-37968255 Msa0069500:intron 40.0%
CAACTACGAATAAGATCGAG+AGG - chr1_2:37968294-37968313 None:intergenic 40.0%
CTCTCGATCTTATTCGTAGT+TGG + chr1_2:37968292-37968311 Msa0069500:intron 40.0%
GATCTTATTCGTAGTTGGGA+AGG + chr1_2:37968297-37968316 Msa0069500:intron 40.0%
TCTTATTCGTAGTTGGGAAG+GGG + chr1_2:37968299-37968318 Msa0069500:intron 40.0%
TAAGCAACTTCTATTAGCGC+CGG - chr1_2:37968404-37968423 None:intergenic 40.0%
TGCTTACTCTCCTAGTTAGA+AGG + chr1_2:37968418-37968437 Msa0069500:intron 40.0%
! CTGCCTTTTTCCTTCTAACT+AGG - chr1_2:37968431-37968450 None:intergenic 40.0%
CTAGTTAGAAGGAAAAAGGC+AGG + chr1_2:37968429-37968448 Msa0069500:intron 40.0%
!!! TTTTCGTAGTAATAGTGGGC+GGG + chr1_2:37968456-37968475 Msa0069500:intron 40.0%
AAGTACGTAGAGATCTTCGT+GGG + chr1_2:37968608-37968627 Msa0069500:intron 40.0%
! TTAAGAGTATGTTCAAGGGG+GGG - chr1_2:37968715-37968734 None:intergenic 40.0%
CCCCTTGAACATACTCTTAA+AGG + chr1_2:37968715-37968734 Msa0069500:intron 40.0%
AAAGTAAACCTCTTCCGTAG+AGG - chr1_2:37968756-37968775 None:intergenic 40.0%
!! TTTTAGGTCGTGTAATAGGG+AGG + chr1_2:37968908-37968927 Msa0069500:intron 40.0%
CTCGAAAGCCTTTAGTACTT+CGG + chr1_2:37968938-37968957 Msa0069500:intron 40.0%
AAAGCCTTTAGTACTTCGGT+AGG + chr1_2:37968942-37968961 Msa0069500:intron 40.0%
AAGCCTTTAGTACTTCGGTA+GGG + chr1_2:37968943-37968962 Msa0069500:intron 40.0%
! AGAGTTCCAAACCGGTTTAA+GGG - chr1_2:37968976-37968995 None:intergenic 40.0%
! AAGAGTTCCAAACCGGTTTA+AGG - chr1_2:37968977-37968996 None:intergenic 40.0%
TGATTCGAAGTCACTACGAA+AGG + chr1_2:37969066-37969085 Msa0069500:intron 40.0%
GATTCGAAGTCACTACGAAA+GGG + chr1_2:37969067-37969086 Msa0069500:intron 40.0%
! AGCATAGCTCTTTATTTCCC+CGG + chr1_2:37969099-37969118 Msa0069500:intron 40.0%
CCGACCATAAAATACGAGAT+TGG + chr1_2:37969298-37969317 Msa0069500:CDS 40.0%
CCATATTACATAAGCGCTCT+TGG - chr1_2:37969362-37969381 None:intergenic 40.0%
!! CCAAGAGCGCTTATGTAATA+TGG + chr1_2:37969359-37969378 Msa0069500:CDS 40.0%
ATGGCTGGAAACAATCCTTA+TGG + chr1_2:37969388-37969407 Msa0069500:CDS 40.0%
! GAGTGTCTGTTGTATCGGTA+GGG - chr1_2:37968090-37968109 None:intergenic 45.0%
! AGAGTGTCTGTTGTATCGGT+AGG - chr1_2:37968091-37968110 None:intergenic 45.0%
! AAGGCTTCCGTTTTCGTTCT+TGG + chr1_2:37968255-37968274 Msa0069500:intron 45.0%
CTTATTCGTAGTTGGGAAGG+GGG + chr1_2:37968300-37968319 Msa0069500:intron 45.0%
GGGGAAGGAGTCTAAATCAA+TGG + chr1_2:37968319-37968338 Msa0069500:CDS 45.0%
TGTGCAACGTCCATCAATGA+TGG - chr1_2:37968356-37968375 None:intergenic 45.0%
GACACGATCAATTCGACTCA+AGG + chr1_2:37968377-37968396 Msa0069500:CDS 45.0%
GATCAATTCGACTCAAGGTC+CGG + chr1_2:37968382-37968401 Msa0069500:CDS 45.0%
GGGTCTCATGATATCTATGC+CGG + chr1_2:37968476-37968495 Msa0069500:CDS 45.0%
GAAGAGTCTGGTCTGAATTC+AGG - chr1_2:37968529-37968548 None:intergenic 45.0%
TCTACGTACTTGTCAAGTCC+AGG - chr1_2:37968599-37968618 None:intergenic 45.0%
CAAGTACGTAGAGATCTTCG+TGG + chr1_2:37968607-37968626 Msa0069500:intron 45.0%
CTAGGATTCCTTATCACGCA+CGG + chr1_2:37968660-37968679 Msa0069500:intron 45.0%
AAAGATCTCCGTGCGTGATA+AGG - chr1_2:37968671-37968690 None:intergenic 45.0%
GGAGCCCTCTTATCTATCAA+TGG - chr1_2:37968694-37968713 None:intergenic 45.0%
TAGGTTACTACCTGCCTCTA+CGG + chr1_2:37968739-37968758 Msa0069500:intron 45.0%
AGCGATAAGAACGAAAGGGT+TGG + chr1_2:37968810-37968829 Msa0069500:intron 45.0%
!! TAAGAACGAAAGGGTTGGTG+TGG + chr1_2:37968815-37968834 Msa0069500:intron 45.0%
ACAACTACTGGCGCTTCAAA+AGG + chr1_2:37968846-37968865 Msa0069500:intron 45.0%
! CGAAGTACTAAAGGCTTTCG+AGG - chr1_2:37968940-37968959 None:intergenic 45.0%
ATACGGGAAGAGTTCCAAAC+CGG - chr1_2:37968984-37969003 None:intergenic 45.0%
TTCGCATTCCTAATCCGGTA+GGG + chr1_2:37969143-37969162 Msa0069500:CDS 45.0%
TTGCAAAGACTGAGCGAGAA+CGG - chr1_2:37969237-37969256 None:intergenic 45.0%
TTCTCGCTCAGTCTTTGCAA+CGG + chr1_2:37969237-37969256 Msa0069500:CDS 45.0%
! GGGCCCAATCTCGTATTTTA+TGG - chr1_2:37969305-37969324 None:intergenic 45.0%
GCCCCTTCTCAAAGATTTGA+TGG + chr1_2:37969321-37969340 Msa0069500:CDS 45.0%
TTACATAAGCGCTCTTGGGT+GGG - chr1_2:37969357-37969376 None:intergenic 45.0%
ATTACATAAGCGCTCTTGGG+TGG - chr1_2:37969358-37969377 None:intergenic 45.0%
GTAATATGGGAACTCATGGC+TGG + chr1_2:37969373-37969392 Msa0069500:CDS 45.0%
! GAGTGTCTGTTGTATCGGTA+GGG - chr1_2:37968090-37968109 None:intergenic 45.0%
! AGAGTGTCTGTTGTATCGGT+AGG - chr1_2:37968091-37968110 None:intergenic 45.0%
! AAGGCTTCCGTTTTCGTTCT+TGG + chr1_2:37968255-37968274 Msa0069500:intron 45.0%
CTTATTCGTAGTTGGGAAGG+GGG + chr1_2:37968300-37968319 Msa0069500:intron 45.0%
GGGGAAGGAGTCTAAATCAA+TGG + chr1_2:37968319-37968338 Msa0069500:CDS 45.0%
TGTGCAACGTCCATCAATGA+TGG - chr1_2:37968356-37968375 None:intergenic 45.0%
GACACGATCAATTCGACTCA+AGG + chr1_2:37968377-37968396 Msa0069500:CDS 45.0%
GATCAATTCGACTCAAGGTC+CGG + chr1_2:37968382-37968401 Msa0069500:CDS 45.0%
GGGTCTCATGATATCTATGC+CGG + chr1_2:37968476-37968495 Msa0069500:CDS 45.0%
GAAGAGTCTGGTCTGAATTC+AGG - chr1_2:37968529-37968548 None:intergenic 45.0%
TCTACGTACTTGTCAAGTCC+AGG - chr1_2:37968599-37968618 None:intergenic 45.0%
CAAGTACGTAGAGATCTTCG+TGG + chr1_2:37968607-37968626 Msa0069500:intron 45.0%
CTAGGATTCCTTATCACGCA+CGG + chr1_2:37968660-37968679 Msa0069500:intron 45.0%
AAAGATCTCCGTGCGTGATA+AGG - chr1_2:37968671-37968690 None:intergenic 45.0%
GGAGCCCTCTTATCTATCAA+TGG - chr1_2:37968694-37968713 None:intergenic 45.0%
TAGGTTACTACCTGCCTCTA+CGG + chr1_2:37968739-37968758 Msa0069500:intron 45.0%
AGCGATAAGAACGAAAGGGT+TGG + chr1_2:37968810-37968829 Msa0069500:intron 45.0%
!! TAAGAACGAAAGGGTTGGTG+TGG + chr1_2:37968815-37968834 Msa0069500:intron 45.0%
ACAACTACTGGCGCTTCAAA+AGG + chr1_2:37968846-37968865 Msa0069500:intron 45.0%
! CGAAGTACTAAAGGCTTTCG+AGG - chr1_2:37968940-37968959 None:intergenic 45.0%
ATACGGGAAGAGTTCCAAAC+CGG - chr1_2:37968984-37969003 None:intergenic 45.0%
TTCGCATTCCTAATCCGGTA+GGG + chr1_2:37969143-37969162 Msa0069500:CDS 45.0%
TTGCAAAGACTGAGCGAGAA+CGG - chr1_2:37969237-37969256 None:intergenic 45.0%
TTCTCGCTCAGTCTTTGCAA+CGG + chr1_2:37969237-37969256 Msa0069500:CDS 45.0%
! GGGCCCAATCTCGTATTTTA+TGG - chr1_2:37969305-37969324 None:intergenic 45.0%
GCCCCTTCTCAAAGATTTGA+TGG + chr1_2:37969321-37969340 Msa0069500:CDS 45.0%
TTACATAAGCGCTCTTGGGT+GGG - chr1_2:37969357-37969376 None:intergenic 45.0%
ATTACATAAGCGCTCTTGGG+TGG - chr1_2:37969358-37969377 None:intergenic 45.0%
GTAATATGGGAACTCATGGC+TGG + chr1_2:37969373-37969392 Msa0069500:CDS 45.0%
! ACAGAAGGAAGAGGTATGCC+CGG - chr1_2:37968132-37968151 None:intergenic 50.0%
GAAAGACGCACAGAAGGAAG+AGG - chr1_2:37968141-37968160 None:intergenic 50.0%
CAGAACAACAGGGAAAGACC+CGG + chr1_2:37968173-37968192 Msa0069500:intron 50.0%
ATGATATCTATGCCGGCCGT+CGG + chr1_2:37968483-37968502 Msa0069500:CDS 50.0%
CTTCATTTGATTCCGACGGC+CGG - chr1_2:37968498-37968517 None:intergenic 50.0%
GGCCGTCGGAATCAAATGAA+GGG + chr1_2:37968497-37968516 Msa0069500:CDS 50.0%
GCCGTCGGAATCAAATGAAG+GGG + chr1_2:37968498-37968517 Msa0069500:CDS 50.0%
GCCCCTTCATTTGATTCCGA+CGG - chr1_2:37968502-37968521 None:intergenic 50.0%
TCGGAATCAAATGAAGGGGC+CGG + chr1_2:37968502-37968521 Msa0069500:CDS 50.0%
CCAGGACAACTGAGATCTTC+CGG - chr1_2:37968581-37968600 None:intergenic 50.0%
TAAACCTCTTCCGTAGAGGC+AGG - chr1_2:37968752-37968771 None:intergenic 50.0%
GAGGTTTACTTTGTACCGCC+CGG + chr1_2:37968764-37968783 Msa0069500:intron 50.0%
CTATCTATATGACCTCCGGG+CGG - chr1_2:37968782-37968801 None:intergenic 50.0%
CCTTTCGTTCTTATCGCTCC+GGG - chr1_2:37968808-37968827 None:intergenic 50.0%
CCCTTTCGTTCTTATCGCTC+CGG - chr1_2:37968809-37968828 None:intergenic 50.0%
CCGGAGCGATAAGAACGAAA+GGG + chr1_2:37968806-37968825 Msa0069500:intron 50.0%
! TCGCCCTACCGAAGTACTAA+AGG - chr1_2:37968949-37968968 None:intergenic 50.0%
CGAAGTCACTACGAAAGGGT+CGG + chr1_2:37969071-37969090 Msa0069500:intron 50.0%
TTTCCTTCGAAAGGAGACCG+GGG - chr1_2:37969119-37969138 None:intergenic 50.0%
CTTTCCTTCGAAAGGAGACC+GGG - chr1_2:37969120-37969139 None:intergenic 50.0%
CCTTTCCTTCGAAAGGAGAC+CGG - chr1_2:37969121-37969140 None:intergenic 50.0%
AGGCCTTCGCATTCCTAATC+CGG + chr1_2:37969138-37969157 Msa0069500:CDS 50.0%
! CTACCGGATTAGGAATGCGA+AGG - chr1_2:37969144-37969163 None:intergenic 50.0%
CTTCGCATTCCTAATCCGGT+AGG + chr1_2:37969142-37969161 Msa0069500:CDS 50.0%
TCGCATTCCTAATCCGGTAG+GGG + chr1_2:37969144-37969163 Msa0069500:CDS 50.0%
AGACTGAGCGAGAACGGTAA+GGG - chr1_2:37969231-37969250 None:intergenic 50.0%
AAGACTGAGCGAGAACGGTA+AGG - chr1_2:37969232-37969251 None:intergenic 50.0%
! CTCGTATTTTATGGTCGGCG+TGG - chr1_2:37969296-37969315 None:intergenic 50.0%
! ACAGAAGGAAGAGGTATGCC+CGG - chr1_2:37968132-37968151 None:intergenic 50.0%
GAAAGACGCACAGAAGGAAG+AGG - chr1_2:37968141-37968160 None:intergenic 50.0%
CAGAACAACAGGGAAAGACC+CGG + chr1_2:37968173-37968192 Msa0069500:intron 50.0%
ATGATATCTATGCCGGCCGT+CGG + chr1_2:37968483-37968502 Msa0069500:CDS 50.0%
CTTCATTTGATTCCGACGGC+CGG - chr1_2:37968498-37968517 None:intergenic 50.0%
GGCCGTCGGAATCAAATGAA+GGG + chr1_2:37968497-37968516 Msa0069500:CDS 50.0%
GCCGTCGGAATCAAATGAAG+GGG + chr1_2:37968498-37968517 Msa0069500:CDS 50.0%
GCCCCTTCATTTGATTCCGA+CGG - chr1_2:37968502-37968521 None:intergenic 50.0%
TCGGAATCAAATGAAGGGGC+CGG + chr1_2:37968502-37968521 Msa0069500:CDS 50.0%
CCAGGACAACTGAGATCTTC+CGG - chr1_2:37968581-37968600 None:intergenic 50.0%
TAAACCTCTTCCGTAGAGGC+AGG - chr1_2:37968752-37968771 None:intergenic 50.0%
GAGGTTTACTTTGTACCGCC+CGG + chr1_2:37968764-37968783 Msa0069500:intron 50.0%
CTATCTATATGACCTCCGGG+CGG - chr1_2:37968782-37968801 None:intergenic 50.0%
CCTTTCGTTCTTATCGCTCC+GGG - chr1_2:37968808-37968827 None:intergenic 50.0%
CCCTTTCGTTCTTATCGCTC+CGG - chr1_2:37968809-37968828 None:intergenic 50.0%
CCGGAGCGATAAGAACGAAA+GGG + chr1_2:37968806-37968825 Msa0069500:intron 50.0%
! TCGCCCTACCGAAGTACTAA+AGG - chr1_2:37968949-37968968 None:intergenic 50.0%
CGAAGTCACTACGAAAGGGT+CGG + chr1_2:37969071-37969090 Msa0069500:intron 50.0%
TTTCCTTCGAAAGGAGACCG+GGG - chr1_2:37969119-37969138 None:intergenic 50.0%
CTTTCCTTCGAAAGGAGACC+GGG - chr1_2:37969120-37969139 None:intergenic 50.0%
CCTTTCCTTCGAAAGGAGAC+CGG - chr1_2:37969121-37969140 None:intergenic 50.0%
AGGCCTTCGCATTCCTAATC+CGG + chr1_2:37969138-37969157 Msa0069500:CDS 50.0%
! CTACCGGATTAGGAATGCGA+AGG - chr1_2:37969144-37969163 None:intergenic 50.0%
CTTCGCATTCCTAATCCGGT+AGG + chr1_2:37969142-37969161 Msa0069500:CDS 50.0%
TCGCATTCCTAATCCGGTAG+GGG + chr1_2:37969144-37969163 Msa0069500:CDS 50.0%
AGACTGAGCGAGAACGGTAA+GGG - chr1_2:37969231-37969250 None:intergenic 50.0%
AAGACTGAGCGAGAACGGTA+AGG - chr1_2:37969232-37969251 None:intergenic 50.0%
! CTCGTATTTTATGGTCGGCG+TGG - chr1_2:37969296-37969315 None:intergenic 50.0%
CCACGAGAAAGACGCACAGA+AGG - chr1_2:37968147-37968166 None:intergenic 55.0%
CCTTCTGTGCGTCTTTCTCG+TGG + chr1_2:37968144-37968163 Msa0069500:intron 55.0%
TCTGTGCGTCTTTCTCGTGG+CGG + chr1_2:37968147-37968166 Msa0069500:intron 55.0%
! GTGGCGGGAACAGAACAACA+GGG + chr1_2:37968163-37968182 Msa0069500:intron 55.0%
TTCGTAGTTGGGAAGGGGGA+AGG + chr1_2:37968304-37968323 Msa0069500:intron 55.0%
CGGCCGTCGGAATCAAATGA+AGG + chr1_2:37968496-37968515 Msa0069500:CDS 55.0%
CGGAATCAAATGAAGGGGCC+GGG + chr1_2:37968503-37968522 Msa0069500:CDS 55.0%
GTCTGGTCTGAATTCAGGCC+CGG - chr1_2:37968524-37968543 None:intergenic 55.0%
CCGGAAGATCTCAGTTGTCC+TGG + chr1_2:37968578-37968597 Msa0069500:CDS 55.0%
CGTAGAGATCTTCGTGGGAC+CGG + chr1_2:37968613-37968632 Msa0069500:intron 55.0%
GTAGAGATCTTCGTGGGACC+GGG + chr1_2:37968614-37968633 Msa0069500:intron 55.0%
TAGAGATCTTCGTGGGACCG+GGG + chr1_2:37968615-37968634 Msa0069500:intron 55.0%
ATCGATTGAGACTCCCTCCC+CGG - chr1_2:37968635-37968654 None:intergenic 55.0%
ACTACCTGCCTCTACGGAAG+AGG + chr1_2:37968745-37968764 Msa0069500:intron 55.0%
GTTTACTTTGTACCGCCCGG+AGG + chr1_2:37968767-37968786 Msa0069500:intron 55.0%
CCCGGAGCGATAAGAACGAA+AGG + chr1_2:37968805-37968824 Msa0069500:intron 55.0%
GTGGCCACAGCTACAACTAC+TGG + chr1_2:37968834-37968853 Msa0069500:intron 55.0%
AGCGCCAGTAGTTGTAGCTG+TGG - chr1_2:37968841-37968860 None:intergenic 55.0%
GAGCAGCCCTTAAACCGGTT+TGG + chr1_2:37968967-37968986 Msa0069500:intron 55.0%
TTTCCCCGGTCTCCTTTCGA+AGG + chr1_2:37969113-37969132 Msa0069500:intron 55.0%
CCGGTCTCCTTTCGAAGGAA+AGG + chr1_2:37969118-37969137 Msa0069500:intron 55.0%
GCGAAGGCCTTTCCTTCGAA+AGG - chr1_2:37969128-37969147 None:intergenic 55.0%
CGCATTCCTAATCCGGTAGG+GGG + chr1_2:37969145-37969164 Msa0069500:CDS 55.0%
! GGATGCGATTAGCCAAGCTG+GGG - chr1_2:37969188-37969207 None:intergenic 55.0%
! GGGATGCGATTAGCCAAGCT+GGG - chr1_2:37969189-37969208 None:intergenic 55.0%
GACTGAGCGAGAACGGTAAG+GGG - chr1_2:37969230-37969249 None:intergenic 55.0%
GCTCAGTCTTTGCAACGGCT+GGG + chr1_2:37969242-37969261 Msa0069500:CDS 55.0%
CTCAGTCTTTGCAACGGCTG+GGG + chr1_2:37969243-37969262 Msa0069500:CDS 55.0%
TTTATGGTCGGCGTGGCGAT+AGG - chr1_2:37969289-37969308 None:intergenic 55.0%
CCACGAGAAAGACGCACAGA+AGG - chr1_2:37968147-37968166 None:intergenic 55.0%
CCTTCTGTGCGTCTTTCTCG+TGG + chr1_2:37968144-37968163 Msa0069500:intron 55.0%
TCTGTGCGTCTTTCTCGTGG+CGG + chr1_2:37968147-37968166 Msa0069500:intron 55.0%
! GTGGCGGGAACAGAACAACA+GGG + chr1_2:37968163-37968182 Msa0069500:intron 55.0%
TTCGTAGTTGGGAAGGGGGA+AGG + chr1_2:37968304-37968323 Msa0069500:intron 55.0%
CGGCCGTCGGAATCAAATGA+AGG + chr1_2:37968496-37968515 Msa0069500:CDS 55.0%
CGGAATCAAATGAAGGGGCC+GGG + chr1_2:37968503-37968522 Msa0069500:CDS 55.0%
GTCTGGTCTGAATTCAGGCC+CGG - chr1_2:37968524-37968543 None:intergenic 55.0%
CCGGAAGATCTCAGTTGTCC+TGG + chr1_2:37968578-37968597 Msa0069500:CDS 55.0%
CGTAGAGATCTTCGTGGGAC+CGG + chr1_2:37968613-37968632 Msa0069500:intron 55.0%
GTAGAGATCTTCGTGGGACC+GGG + chr1_2:37968614-37968633 Msa0069500:intron 55.0%
TAGAGATCTTCGTGGGACCG+GGG + chr1_2:37968615-37968634 Msa0069500:intron 55.0%
ATCGATTGAGACTCCCTCCC+CGG - chr1_2:37968635-37968654 None:intergenic 55.0%
ACTACCTGCCTCTACGGAAG+AGG + chr1_2:37968745-37968764 Msa0069500:intron 55.0%
GTTTACTTTGTACCGCCCGG+AGG + chr1_2:37968767-37968786 Msa0069500:intron 55.0%
CCCGGAGCGATAAGAACGAA+AGG + chr1_2:37968805-37968824 Msa0069500:intron 55.0%
GTGGCCACAGCTACAACTAC+TGG + chr1_2:37968834-37968853 Msa0069500:intron 55.0%
AGCGCCAGTAGTTGTAGCTG+TGG - chr1_2:37968841-37968860 None:intergenic 55.0%
GAGCAGCCCTTAAACCGGTT+TGG + chr1_2:37968967-37968986 Msa0069500:intron 55.0%
TTTCCCCGGTCTCCTTTCGA+AGG + chr1_2:37969113-37969132 Msa0069500:intron 55.0%
CCGGTCTCCTTTCGAAGGAA+AGG + chr1_2:37969118-37969137 Msa0069500:intron 55.0%
GCGAAGGCCTTTCCTTCGAA+AGG - chr1_2:37969128-37969147 None:intergenic 55.0%
CGCATTCCTAATCCGGTAGG+GGG + chr1_2:37969145-37969164 Msa0069500:CDS 55.0%
! GGATGCGATTAGCCAAGCTG+GGG - chr1_2:37969188-37969207 None:intergenic 55.0%
! GGGATGCGATTAGCCAAGCT+GGG - chr1_2:37969189-37969208 None:intergenic 55.0%
GACTGAGCGAGAACGGTAAG+GGG - chr1_2:37969230-37969249 None:intergenic 55.0%
GCTCAGTCTTTGCAACGGCT+GGG + chr1_2:37969242-37969261 Msa0069500:CDS 55.0%
CTCAGTCTTTGCAACGGCTG+GGG + chr1_2:37969243-37969262 Msa0069500:CDS 55.0%
TTTATGGTCGGCGTGGCGAT+AGG - chr1_2:37969289-37969308 None:intergenic 55.0%
CTGTGCGTCTTTCTCGTGGC+GGG + chr1_2:37968148-37968167 Msa0069500:intron 60.0%
! CGTGGCGGGAACAGAACAAC+AGG + chr1_2:37968162-37968181 Msa0069500:intron 60.0%
AAAGCTCGCCCTCGAGCCTT+GGG - chr1_2:37968207-37968226 None:intergenic 60.0%
TAAAGCTCGCCCTCGAGCCT+TGG - chr1_2:37968208-37968227 None:intergenic 60.0%
AGGGCGAGCAGCCCTTAAAC+CGG + chr1_2:37968962-37968981 Msa0069500:intron 60.0%
TTCCTAATCCGGTAGGGGGC+CGG + chr1_2:37969149-37969168 Msa0069500:CDS 60.0%
CTGGGGCAAACAAAGCCGTC+CGG - chr1_2:37969171-37969190 None:intergenic 60.0%
!! CGGCTTTGTTTGCCCCAGCT+TGG + chr1_2:37969173-37969192 Msa0069500:CDS 60.0%
! GGGGATGCGATTAGCCAAGC+TGG - chr1_2:37969190-37969209 None:intergenic 60.0%
CGCTCAGTCTTTGCAACGGC+TGG + chr1_2:37969241-37969260 Msa0069500:CDS 60.0%
AGTCTTTGCAACGGCTGGGG+AGG + chr1_2:37969246-37969265 Msa0069500:CDS 60.0%
! TAAGCGCTCTTGGGTGGGCT+GGG - chr1_2:37969352-37969371 None:intergenic 60.0%
ATAAGCGCTCTTGGGTGGGC+TGG - chr1_2:37969353-37969372 None:intergenic 60.0%
CTGTGCGTCTTTCTCGTGGC+GGG + chr1_2:37968148-37968167 Msa0069500:intron 60.0%
! CGTGGCGGGAACAGAACAAC+AGG + chr1_2:37968162-37968181 Msa0069500:intron 60.0%
AAAGCTCGCCCTCGAGCCTT+GGG - chr1_2:37968207-37968226 None:intergenic 60.0%
TAAAGCTCGCCCTCGAGCCT+TGG - chr1_2:37968208-37968227 None:intergenic 60.0%
AGGGCGAGCAGCCCTTAAAC+CGG + chr1_2:37968962-37968981 Msa0069500:intron 60.0%
TTCCTAATCCGGTAGGGGGC+CGG + chr1_2:37969149-37969168 Msa0069500:CDS 60.0%
CTGGGGCAAACAAAGCCGTC+CGG - chr1_2:37969171-37969190 None:intergenic 60.0%
!! CGGCTTTGTTTGCCCCAGCT+TGG + chr1_2:37969173-37969192 Msa0069500:CDS 60.0%
! GGGGATGCGATTAGCCAAGC+TGG - chr1_2:37969190-37969209 None:intergenic 60.0%
CGCTCAGTCTTTGCAACGGC+TGG + chr1_2:37969241-37969260 Msa0069500:CDS 60.0%
AGTCTTTGCAACGGCTGGGG+AGG + chr1_2:37969246-37969265 Msa0069500:CDS 60.0%
! TAAGCGCTCTTGGGTGGGCT+GGG - chr1_2:37969352-37969371 None:intergenic 60.0%
ATAAGCGCTCTTGGGTGGGC+TGG - chr1_2:37969353-37969372 None:intergenic 60.0%
TCAACGGATCCTCCGCGCTC+CGG + chr1_2:37968110-37968129 Msa0069500:CDS 65.0%
! GAAGAGGTATGCCCGGAGCG+CGG - chr1_2:37968125-37968144 None:intergenic 65.0%
ATCTTCCGGTCTGCGCGCGT+GGG - chr1_2:37968567-37968586 None:intergenic 65.0%
AGATCTTCGTGGGACCGGGG+AGG + chr1_2:37968618-37968637 Msa0069500:intron 65.0%
GATCTTCGTGGGACCGGGGA+GGG + chr1_2:37968619-37968638 Msa0069500:intron 65.0%
TAATCCGGTAGGGGGCCGGA+CGG + chr1_2:37969153-37969172 Msa0069500:CDS 65.0%
GGCGAGAATGTCGTTGCGCG+GGG - chr1_2:37969209-37969228 None:intergenic 65.0%
GGGCGAGAATGTCGTTGCGC+GGG - chr1_2:37969210-37969229 None:intergenic 65.0%
GGGGCGAGAATGTCGTTGCG+CGG - chr1_2:37969211-37969230 None:intergenic 65.0%
TCAACGGATCCTCCGCGCTC+CGG + chr1_2:37968110-37968129 Msa0069500:CDS 65.0%
! GAAGAGGTATGCCCGGAGCG+CGG - chr1_2:37968125-37968144 None:intergenic 65.0%
ATCTTCCGGTCTGCGCGCGT+GGG - chr1_2:37968567-37968586 None:intergenic 65.0%
AGATCTTCGTGGGACCGGGG+AGG + chr1_2:37968618-37968637 Msa0069500:intron 65.0%
GATCTTCGTGGGACCGGGGA+GGG + chr1_2:37968619-37968638 Msa0069500:intron 65.0%
TAATCCGGTAGGGGGCCGGA+CGG + chr1_2:37969153-37969172 Msa0069500:CDS 65.0%
GGCGAGAATGTCGTTGCGCG+GGG - chr1_2:37969209-37969228 None:intergenic 65.0%
GGGCGAGAATGTCGTTGCGC+GGG - chr1_2:37969210-37969229 None:intergenic 65.0%
GGGGCGAGAATGTCGTTGCG+CGG - chr1_2:37969211-37969230 None:intergenic 65.0%
CAACGGATCCTCCGCGCTCC+GGG + chr1_2:37968111-37968130 Msa0069500:CDS 70.0%
CCCTCGAGCCTTGGGCAGGT+CGG - chr1_2:37968199-37968218 None:intergenic 70.0%
CCGACCTGCCCAAGGCTCGA+GGG + chr1_2:37968196-37968215 Msa0069500:intron 70.0%
GATCTTCCGGTCTGCGCGCG+TGG - chr1_2:37968568-37968587 None:intergenic 70.0%
GTCCGGCCCCCTACCGGATT+AGG - chr1_2:37969154-37969173 None:intergenic 70.0%
AAAGCCGTCCGGCCCCCTAC+CGG - chr1_2:37969160-37969179 None:intergenic 70.0%
CAACGGATCCTCCGCGCTCC+GGG + chr1_2:37968111-37968130 Msa0069500:CDS 70.0%
CCCTCGAGCCTTGGGCAGGT+CGG - chr1_2:37968199-37968218 None:intergenic 70.0%
CCGACCTGCCCAAGGCTCGA+GGG + chr1_2:37968196-37968215 Msa0069500:intron 70.0%
GATCTTCCGGTCTGCGCGCG+TGG - chr1_2:37968568-37968587 None:intergenic 70.0%
GTCCGGCCCCCTACCGGATT+AGG - chr1_2:37969154-37969173 None:intergenic 70.0%
AAAGCCGTCCGGCCCCCTAC+CGG - chr1_2:37969160-37969179 None:intergenic 70.0%
GAGGTATGCCCGGAGCGCGG+AGG - chr1_2:37968122-37968141 None:intergenic 75.0%
AGACCCGGCCGACCTGCCCA+AGG + chr1_2:37968188-37968207 Msa0069500:intron 75.0%
GAGCCTTGGGCAGGTCGGCC+GGG - chr1_2:37968194-37968213 None:intergenic 75.0%
CGAGCCTTGGGCAGGTCGGC+CGG - chr1_2:37968195-37968214 None:intergenic 75.0%
GCCGACCTGCCCAAGGCTCG+AGG + chr1_2:37968195-37968214 Msa0069500:intron 75.0%
CTCGCCCTCGAGCCTTGGGC+AGG - chr1_2:37968203-37968222 None:intergenic 75.0%
CTGCTCCCACGCGCGCAGAC+CGG + chr1_2:37968559-37968578 Msa0069500:CDS 75.0%
GAGGTATGCCCGGAGCGCGG+AGG - chr1_2:37968122-37968141 None:intergenic 75.0%
AGACCCGGCCGACCTGCCCA+AGG + chr1_2:37968188-37968207 Msa0069500:intron 75.0%
GAGCCTTGGGCAGGTCGGCC+GGG - chr1_2:37968194-37968213 None:intergenic 75.0%
CGAGCCTTGGGCAGGTCGGC+CGG - chr1_2:37968195-37968214 None:intergenic 75.0%
GCCGACCTGCCCAAGGCTCG+AGG + chr1_2:37968195-37968214 Msa0069500:intron 75.0%
CTCGCCCTCGAGCCTTGGGC+AGG - chr1_2:37968203-37968222 None:intergenic 75.0%
CTGCTCCCACGCGCGCAGAC+CGG + chr1_2:37968559-37968578 Msa0069500:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 37968069 37969426 37968069 ID=Msa0069500;Name=Msa0069500
chr1_2 mRNA 37968069 37969426 37968069 ID=Msa0069500-mRNA-1;Parent=Msa0069500;Name=Msa0069500-mRNA-1;_AED=0.20;_eAED=0.25;_QI=0|0|0|1|0.33|0.5|4|0|210
chr1_2 exon 37968069 37968149 37968069 ID=Msa0069500-mRNA-1:exon:11999;Parent=Msa0069500-mRNA-1
chr1_2 exon 37968311 37968431 37968311 ID=Msa0069500-mRNA-1:exon:12000;Parent=Msa0069500-mRNA-1
chr1_2 exon 37968471 37968609 37968471 ID=Msa0069500-mRNA-1:exon:12001;Parent=Msa0069500-mRNA-1
chr1_2 exon 37969135 37969426 37969135 ID=Msa0069500-mRNA-1:exon:12002;Parent=Msa0069500-mRNA-1
chr1_2 CDS 37968069 37968149 37968069 ID=Msa0069500-mRNA-1:cds;Parent=Msa0069500-mRNA-1
chr1_2 CDS 37968311 37968431 37968311 ID=Msa0069500-mRNA-1:cds;Parent=Msa0069500-mRNA-1
chr1_2 CDS 37968471 37968609 37968471 ID=Msa0069500-mRNA-1:cds;Parent=Msa0069500-mRNA-1
chr1_2 CDS 37969135 37969426 37969135 ID=Msa0069500-mRNA-1:cds;Parent=Msa0069500-mRNA-1
Gene Sequence

>Msa0069500

GGAAAAGATCGTAAAGTTCCCTACCGATACAACAGACACTCTCAACGGATCCTCCGCGCTCCGGGCATACCTCTTCCTTCTTTGGGAAGGGGGAAGGAGTCTAAATCAATGGACATTAATGAACCATCATTGATGGACGTTGCACATGACACGATCAATTCGACTCAAGGTCCGGCGCTAATAGAAGTTGCTTACTCTCCTATGGGCGGGTCTCATGATATCTATGCCGGCCGTCGGAATCAAATGAAGGGGCCGGGCCTGAATTCAGACCAGACTCTTCTTTATTTGAGCTGCTCCCACGCGCGCAGACCGGAAGATCTCAGTTGTCCTGGACTTGACAAGAAAGGCCTTCGCATTCCTAATCCGGTAGGGGGCCGGACGGCTTTGTTTGCCCCAGCTTGGCTAATCGCATCCCCGCGCAACGACATTCTCGCCCCTTACCGTTCTCGCTCAGTCTTTGCAACGGCTGGGGAGGCAGTCGTAGAAGCGAAGCCTATCGCCACGCCGACCATAAAATACGAGATTGGGCCCCTTCTCAAAGATTTGATGGAATGGCCCAGCCCACCCAAGAGCGCTTATGTAATATGGGAACTCATGGCTGGAAACAATCCTTATGGTTTTGATATCCGGTAG

Protein sequence

>Msa0069500

GKDRKVPYRYNRHSQRILRAPGIPLPSLGRGKESKSMDINEPSLMDVAHDTINSTQGPALIEVAYSPMGGSHDIYAGRRNQMKGPGLNSDQTLLYLSCSHARRPEDLSCPGLDKKGLRIPNPVGGRTALFAPAWLIASPRNDILAPYRSRSVFATAGEAVVEAKPIATPTIKYEIGPLLKDLMEWPSPPKSAYVIWELMAGNNPYGFDIR*