Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392160 | YP_009526555.1 | 91.759 | 449 | 9 | 1 | 1 | 449 | 230 | 650 | 0.0 | 840 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392160 | sp|Q04716|RT03_PETHY | 91.447 | 304 | 26 | 0 | 1 | 304 | 249 | 552 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392160 | A0A385G296 | 91.759 | 449 | 9 | 1 | 1 | 449 | 230 | 650 | 0.0 | 840 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015090 | Msa1392160 | -0.800253 | 1.571581e-48 | -8.615850e-47 |
| Msa0020390 | Msa1392160 | -0.820372 | 7.102910e-53 | -8.615850e-47 |
| Msa0021210 | Msa1392160 | -0.825813 | 3.818990e-54 | -8.615850e-47 |
| Msa0026430 | Msa1392160 | -0.804014 | 2.646866e-49 | -8.615850e-47 |
| Msa0034970 | Msa1392160 | -0.804031 | 2.625684e-49 | -8.615850e-47 |
| Msa0037880 | Msa1392160 | -0.811913 | 5.519893e-51 | -8.615850e-47 |
| Msa0052400 | Msa1392160 | -0.806515 | 7.924120e-50 | -8.615850e-47 |
| Msa0065950 | Msa1392160 | -0.825064 | 5.746178e-54 | -8.615850e-47 |
| Msa0069500 | Msa1392160 | 0.886497 | 3.248343e-72 | -8.615850e-47 |
| Msa0069510 | Msa1392160 | 0.816285 | 5.982420e-52 | -8.615850e-47 |
| Msa0075500 | Msa1392160 | -0.804936 | 1.700287e-49 | -8.615850e-47 |
| Msa0084430 | Msa1392160 | -0.803944 | 2.737045e-49 | -8.615850e-47 |
| Msa0089820 | Msa1392160 | -0.806333 | 8.657149e-50 | -8.615850e-47 |
| Msa0090550 | Msa1392160 | -0.805438 | 1.334977e-49 | -8.615850e-47 |
| Msa0096980 | Msa1392160 | -0.803914 | 2.776627e-49 | -8.615850e-47 |
| Msa0114430 | Msa1392160 | -0.817059 | 4.013079e-52 | -8.615850e-47 |
| Msa0118540 | Msa1392160 | -0.804763 | 1.848104e-49 | -8.615850e-47 |
| Msa1344660 | Msa1392160 | -0.811910 | 5.528240e-51 | -8.615850e-47 |
| Msa1357430 | Msa1392160 | -0.804721 | 1.885405e-49 | -8.615850e-47 |
| Msa1357890 | Msa1392160 | -0.810750 | 9.867238e-51 | -8.615850e-47 |
| Msa1391960 | Msa1392160 | 0.808604 | 2.854253e-50 | -8.615850e-47 |
| Msa1391970 | Msa1392160 | 0.914992 | 9.987058e-85 | -8.615850e-47 |
| Msa1391980 | Msa1392160 | 0.808552 | 2.928056e-50 | -8.615850e-47 |
| Msa1392010 | Msa1392160 | 0.857589 | 1.472882e-62 | -8.615850e-47 |
| Msa1392020 | Msa1392160 | 0.806395 | 8.400702e-50 | -8.615850e-47 |
| Msa1392030 | Msa1392160 | 0.909973 | 3.146377e-82 | -8.615850e-47 |
| Msa1392120 | Msa1392160 | 0.894317 | 2.762011e-75 | -8.615850e-47 |
| Msa1392160 | Msa1397120 | -0.804085 | 2.557925e-49 | -8.615850e-47 |
| Msa1392160 | Msa1398090 | -0.812061 | 5.123266e-51 | -8.615850e-47 |
| Msa1392160 | Msa1403340 | -0.808419 | 3.126125e-50 | -8.615850e-47 |
| Msa1392160 | Msa1403890 | -0.801355 | 9.361719e-49 | -8.615850e-47 |
| Msa1392160 | Msa1407600 | -0.821997 | 2.997281e-53 | -8.615850e-47 |
| Msa1392160 | Msa1447890 | -0.808517 | 2.979729e-50 | -8.615850e-47 |
| Msa1392160 | Msa1453860 | 0.824612 | 7.343228e-54 | -8.615850e-47 |
| Msa1392160 | Msa1453870 | 0.830704 | 2.527536e-55 | -8.615850e-47 |
| Msa1392160 | Msa1454960 | -0.808494 | 3.012540e-50 | -8.615850e-47 |
| Msa1392160 | Msa1456230 | -0.805872 | 1.082337e-49 | -8.615850e-47 |
| Msa1392160 | Msa1462060 | -0.807823 | 4.187721e-50 | -8.615850e-47 |
| Msa0640940 | Msa1392160 | -0.801387 | 9.224073e-49 | -8.615850e-47 |
| Msa0657460 | Msa1392160 | 0.805787 | 1.127525e-49 | -8.615850e-47 |
| Msa0661710 | Msa1392160 | -0.800259 | 1.567412e-48 | -8.615850e-47 |
| Msa0682680 | Msa1392160 | -0.825665 | 4.140517e-54 | -8.615850e-47 |
| Msa0697990 | Msa1392160 | 0.849765 | 2.621529e-60 | -8.615850e-47 |
| Msa0698540 | Msa1392160 | -0.807974 | 3.888036e-50 | -8.615850e-47 |
| Msa0702370 | Msa1392160 | -0.808995 | 2.354352e-50 | -8.615850e-47 |
| Msa0702550 | Msa1392160 | -0.814691 | 1.354193e-51 | -8.615850e-47 |
| Msa0709120 | Msa1392160 | -0.805178 | 1.513416e-49 | -8.615850e-47 |
| Msa0709160 | Msa1392160 | -0.812538 | 4.031926e-51 | -8.615850e-47 |
| Msa0721280 | Msa1392160 | -0.805543 | 1.268684e-49 | -8.615850e-47 |
| Msa0747260 | Msa1392160 | -0.834553 | 2.804316e-56 | -8.615850e-47 |
| Msa0763890 | Msa1392160 | -0.803157 | 3.985837e-49 | -8.615850e-47 |
| Msa0763920 | Msa1392160 | -0.800207 | 1.606270e-48 | -8.615850e-47 |
| Msa0139670 | Msa1392160 | -0.806102 | 9.680983e-50 | -8.615850e-47 |
| Msa0145010 | Msa1392160 | -0.804488 | 2.108900e-49 | -8.615850e-47 |
| Msa0163040 | Msa1392160 | -0.804799 | 1.815981e-49 | -8.615850e-47 |
| Msa0175840 | Msa1392160 | -0.808553 | 2.927158e-50 | -8.615850e-47 |
| Msa0206010 | Msa1392160 | -0.808178 | 3.519039e-50 | -8.615850e-47 |
| Msa0220440 | Msa1392160 | -0.829238 | 5.756465e-55 | -8.615850e-47 |
| Msa0226180 | Msa1392160 | -0.800538 | 1.375202e-48 | -8.615850e-47 |
| Msa0229380 | Msa1392160 | -0.815594 | 8.535157e-52 | -8.615850e-47 |
| Msa0233370 | Msa1392160 | -0.802353 | 5.839716e-49 | -8.615850e-47 |
| Msa1224580 | Msa1392160 | 0.829605 | 4.688187e-55 | -8.615850e-47 |
| Msa1224810 | Msa1392160 | -0.815559 | 8.689261e-52 | -8.615850e-47 |
| Msa1228620 | Msa1392160 | 0.868950 | 4.459840e-66 | -8.615850e-47 |
| Msa1253800 | Msa1392160 | -0.800594 | 1.339494e-48 | -8.615850e-47 |
| Msa1263290 | Msa1392160 | 0.806985 | 6.304144e-50 | -8.615850e-47 |
| Msa1270660 | Msa1392160 | -0.820026 | 8.525923e-53 | -8.615850e-47 |
| Msa1270730 | Msa1392160 | -0.829864 | 4.054813e-55 | -8.615850e-47 |
| Msa1276440 | Msa1392160 | -0.809823 | 1.563873e-50 | -8.615850e-47 |
| Msa1295330 | Msa1392160 | -0.801836 | 7.459561e-49 | -8.615850e-47 |
| Msa1298510 | Msa1392160 | -0.830416 | 2.974118e-55 | -8.615850e-47 |
| Msa1307740 | Msa1392160 | -0.804211 | 2.409093e-49 | -8.615850e-47 |
| Msa1332050 | Msa1392160 | -0.807867 | 4.098095e-50 | -8.615850e-47 |
| Msa1336040 | Msa1392160 | -0.804949 | 1.689581e-49 | -8.615850e-47 |
| Msa0382370 | Msa1392160 | -0.806213 | 9.174572e-50 | -8.615850e-47 |
| Msa0388650 | Msa1392160 | -0.809689 | 1.671456e-50 | -8.615850e-47 |
| Msa0389810 | Msa1392160 | -0.803729 | 3.033955e-49 | -8.615850e-47 |
| Msa0401560 | Msa1392160 | -0.810979 | 8.802739e-51 | -8.615850e-47 |
| Msa0412840 | Msa1392160 | -0.806462 | 8.128864e-50 | -8.615850e-47 |
| Msa0433410 | Msa1392160 | 0.817021 | 4.092291e-52 | -8.615850e-47 |
| Msa0436190 | Msa1392160 | -0.801569 | 8.462512e-49 | -8.615850e-47 |
| Msa0453350 | Msa1392160 | -0.810499 | 1.118221e-50 | -8.615850e-47 |
| Msa0457510 | Msa1392160 | -0.813960 | 1.964486e-51 | -8.615850e-47 |
| Msa0467220 | Msa1392160 | -0.808301 | 3.312228e-50 | -8.615850e-47 |
| Msa0468130 | Msa1392160 | -0.801178 | 1.017955e-48 | -8.615850e-47 |
| Msa0471900 | Msa1392160 | -0.814537 | 1.464950e-51 | -8.615850e-47 |
| Msa0472960 | Msa1392160 | 0.811644 | 6.315691e-51 | -8.615850e-47 |
| Msa0477130 | Msa1392160 | 0.810360 | 1.198321e-50 | -8.615850e-47 |
| Msa0481280 | Msa1392160 | -0.805177 | 1.513876e-49 | -8.615850e-47 |
| Msa0982270 | Msa1392160 | -0.811442 | 6.985957e-51 | -8.615850e-47 |
| Msa0983130 | Msa1392160 | 0.835780 | 1.375196e-56 | -8.615850e-47 |
| Msa0983160 | Msa1392160 | 0.801606 | 8.317828e-49 | -8.615850e-47 |
| Msa0983170 | Msa1392160 | 0.900522 | 6.734232e-78 | -8.615850e-47 |
| Msa0983180 | Msa1392160 | 0.878187 | 3.440629e-69 | -8.615850e-47 |
| Msa0983190 | Msa1392160 | 0.911889 | 3.643486e-83 | -8.615850e-47 |
| Msa0983210 | Msa1392160 | 0.897181 | 1.803558e-76 | -8.615850e-47 |
| Msa0983220 | Msa1392160 | 0.880046 | 7.573680e-70 | -8.615850e-47 |
| Msa0983230 | Msa1392160 | 0.802124 | 6.510020e-49 | -8.615850e-47 |
| Msa0983260 | Msa1392160 | 0.882043 | 1.449873e-70 | -8.615850e-47 |
| Msa0983300 | Msa1392160 | 0.909625 | 4.628175e-82 | -8.615850e-47 |
| Msa0983310 | Msa1392160 | 0.820871 | 5.453923e-53 | -8.615850e-47 |
| Msa0983320 | Msa1392160 | 0.862063 | 6.604513e-64 | -8.615850e-47 |
| Msa0983350 | Msa1392160 | 0.915720 | 4.207577e-85 | -8.615850e-47 |
| Msa0983360 | Msa1392160 | 0.823076 | 1.682520e-53 | -8.615850e-47 |
| Msa0983420 | Msa1392160 | 0.806520 | 7.905631e-50 | -8.615850e-47 |
| Msa0983460 | Msa1392160 | 0.900100 | 1.026517e-77 | -8.615850e-47 |
| Msa0983490 | Msa1392160 | 0.878254 | 3.259923e-69 | -8.615850e-47 |
| Msa0983500 | Msa1392160 | 0.906253 | 1.808308e-80 | -8.615850e-47 |
| Msa0983520 | Msa1392160 | 0.909835 | 3.667627e-82 | -8.615850e-47 |
| Msa0983530 | Msa1392160 | 0.873060 | 1.968986e-67 | -8.615850e-47 |
| Msa0983540 | Msa1392160 | 0.892897 | 1.038657e-74 | -8.615850e-47 |
| Msa0983550 | Msa1392160 | 0.833841 | 4.230944e-56 | -8.615850e-47 |
| Msa0992580 | Msa1392160 | -0.808471 | 3.046870e-50 | -8.615850e-47 |
| Msa0992600 | Msa1392160 | -0.805685 | 1.184905e-49 | -8.615850e-47 |
| Msa0994370 | Msa1392160 | -0.826352 | 2.843162e-54 | -8.615850e-47 |
| Msa0999050 | Msa1392160 | 0.809476 | 1.857020e-50 | -8.615850e-47 |
| Msa1042660 | Msa1392160 | -0.808726 | 2.688568e-50 | -8.615850e-47 |
| Msa1063420 | Msa1392160 | -0.807270 | 5.486043e-50 | -8.615850e-47 |
| Msa1078420 | Msa1392160 | -0.803304 | 3.716838e-49 | -8.615850e-47 |
| Msa1081220 | Msa1392160 | -0.803170 | 3.961992e-49 | -8.615850e-47 |
| Msa1088290 | Msa1392160 | -0.813109 | 3.022479e-51 | -8.615850e-47 |
| Msa0253200 | Msa1392160 | -0.821157 | 4.688532e-53 | -8.615850e-47 |
| Msa0261550 | Msa1392160 | -0.821881 | 3.189515e-53 | -8.615850e-47 |
| Msa0261720 | Msa1392160 | -0.848623 | 5.446557e-60 | -8.615850e-47 |
| Msa0262370 | Msa1392160 | -0.816592 | 5.107132e-52 | -8.615850e-47 |
| Msa0265150 | Msa1392160 | -0.800695 | 1.277590e-48 | -8.615850e-47 |
| Msa0271580 | Msa1392160 | -0.806852 | 6.724668e-50 | -8.615850e-47 |
| Msa0290760 | Msa1392160 | -0.801345 | 9.406636e-49 | -8.615850e-47 |
| Msa0292030 | Msa1392160 | -0.822118 | 2.811296e-53 | -8.615850e-47 |
| Msa0296920 | Msa1392160 | -0.801106 | 1.052934e-48 | -8.615850e-47 |
| Msa0299580 | Msa1392160 | -0.806230 | 9.097533e-50 | -8.615850e-47 |
| Msa0309880 | Msa1392160 | -0.801667 | 8.080285e-49 | -8.615850e-47 |
| Msa0319170 | Msa1392160 | -0.820953 | 5.222909e-53 | -8.615850e-47 |
| Msa0326110 | Msa1392160 | -0.810304 | 1.231771e-50 | -8.615850e-47 |
| Msa0330310 | Msa1392160 | -0.803706 | 3.067066e-49 | -8.615850e-47 |
| Msa0335060 | Msa1392160 | -0.803099 | 4.097364e-49 | -8.615850e-47 |
| Msa0337060 | Msa1392160 | -0.829384 | 5.304249e-55 | -8.615850e-47 |
| Msa0337590 | Msa1392160 | -0.830888 | 2.278028e-55 | -8.615850e-47 |
| Msa0347610 | Msa1392160 | -0.800805 | 1.213115e-48 | -8.615850e-47 |
| Msa1129550 | Msa1392160 | -0.810583 | 1.072591e-50 | -8.615850e-47 |
| Msa1144040 | Msa1392160 | -0.815350 | 9.668567e-52 | -8.615850e-47 |
| Msa1169530 | Msa1392160 | -0.801467 | 8.883234e-49 | -8.615850e-47 |
| Msa1169550 | Msa1392160 | -0.804192 | 2.430406e-49 | -8.615850e-47 |
| Msa1210020 | Msa1392160 | -0.821951 | 3.073301e-53 | -8.615850e-47 |
| Msa1217430 | Msa1392160 | 0.813941 | 1.983419e-51 | -8.615850e-47 |
| Msa1223870 | Msa1392160 | -0.809553 | 1.787473e-50 | -8.615850e-47 |
| Msa0485490 | Msa1392160 | -0.818791 | 1.629835e-52 | -8.615850e-47 |
| Msa0510840 | Msa1392160 | -0.818498 | 1.899882e-52 | -8.615850e-47 |
| Msa0534410 | Msa1392160 | -0.812184 | 4.818061e-51 | -8.615850e-47 |
| Msa0545080 | Msa1392160 | -0.808828 | 2.556112e-50 | -8.615850e-47 |
| Msa0557480 | Msa1392160 | -0.801427 | 9.052678e-49 | -8.615850e-47 |
| Msa0590650 | Msa1392160 | -0.803060 | 4.174561e-49 | -8.615850e-47 |
| Msa0595640 | Msa1392160 | 0.835385 | 1.730165e-56 | -8.615850e-47 |
| Msa0872440 | Msa1392160 | -0.818636 | 1.767792e-52 | -8.615850e-47 |
| Msa0877710 | Msa1392160 | -0.809493 | 1.841136e-50 | -8.615850e-47 |
| Msa0890550 | Msa1392160 | -0.811723 | 6.069760e-51 | -8.615850e-47 |
| Msa0908820 | Msa1392160 | 0.809801 | 1.581471e-50 | -8.615850e-47 |
| Msa0908830 | Msa1392160 | 0.892625 | 1.336211e-74 | -8.615850e-47 |
| Msa0908840 | Msa1392160 | 0.877761 | 4.848826e-69 | -8.615850e-47 |
| Msa0908850 | Msa1392160 | 0.901733 | 1.987194e-78 | -8.615850e-47 |
| Msa0908870 | Msa1392160 | 0.889129 | 3.193100e-73 | -8.615850e-47 |
| Msa0908920 | Msa1392160 | 0.868560 | 5.962614e-66 | -8.615850e-47 |
| Msa0908930 | Msa1392160 | 0.873329 | 1.599715e-67 | -8.615850e-47 |
| Msa0918390 | Msa1392160 | -0.805453 | 1.324999e-49 | -8.615850e-47 |
| Msa0919990 | Msa1392160 | 0.834576 | 2.767564e-56 | -8.615850e-47 |
| Msa0920000 | Msa1392160 | 0.874625 | 5.832668e-68 | -8.615850e-47 |
| Msa0920060 | Msa1392160 | 0.907849 | 3.246970e-81 | -8.615850e-47 |
| Msa0944900 | Msa1392160 | 0.918334 | 1.770971e-86 | -8.615850e-47 |
| Msa0944920 | Msa1392160 | 0.913462 | 5.985709e-84 | -8.615850e-47 |
| Msa0944930 | Msa1392160 | 0.873588 | 1.309185e-67 | -8.615850e-47 |
| Msa0944940 | Msa1392160 | 0.902585 | 8.338283e-79 | -8.615850e-47 |
| Msa0944950 | Msa1392160 | 0.826945 | 2.053102e-54 | -8.615850e-47 |
| Msa0944990 | Msa1392160 | 0.882445 | 1.035761e-70 | -8.615850e-47 |
| Msa0970530 | Msa1392160 | -0.805027 | 1.627730e-49 | -8.615850e-47 |
| Msa0970600 | Msa1392160 | -0.802343 | 5.869437e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392160 | MtrunA17_MTg0490641 | 93.096 | 449 | 12 | 2 | 1 | 449 | 153 | 582 | 0.0 | 837 |
| Msa1392160 | MtrunA17_Chr7g0225331 | 91.892 | 74 | 6 | 0 | 324 | 397 | 4 | 77 | 1.20e-42 | 145 |
| Msa1392160 | MtrunA17_CPg0492581 | 44.444 | 117 | 57 | 1 | 330 | 446 | 8 | 116 | 5.18e-26 | 102 |
| Msa1392160 | MtrunA17_Chr4g0015951 | 44.444 | 117 | 57 | 1 | 330 | 446 | 8 | 116 | 5.18e-26 | 102 |
| Msa1392160 | MtrunA17_Chr4g0017141 | 50.633 | 79 | 39 | 0 | 368 | 446 | 1 | 79 | 1.68e-20 | 85.5 |
| Msa1392160 | MtrunA17_Chr8g0378141 | 43.750 | 96 | 46 | 1 | 330 | 425 | 8 | 95 | 5.93e-19 | 81.6 |
| Msa1392160 | MtrunA17_Chr6g0465811 | 46.835 | 79 | 42 | 0 | 368 | 446 | 1 | 79 | 6.17e-17 | 75.5 |
| Msa1392160 | MtrunA17_Chr4g0015971 | 37.736 | 106 | 62 | 2 | 192 | 297 | 108 | 209 | 5.23e-12 | 65.1 |
| Msa1392160 | MtrunA17_CPg0492551 | 37.736 | 106 | 62 | 2 | 192 | 297 | 108 | 209 | 5.23e-12 | 65.1 |
| Msa1392160 | MtrunA17_Chr3g0094641 | 37.736 | 106 | 62 | 2 | 192 | 297 | 108 | 209 | 5.64e-12 | 65.1 |
| Msa1392160 | MtrunA17_Chr2g0322141 | 47.458 | 59 | 31 | 0 | 388 | 446 | 5 | 63 | 1.37e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392160 | ATMG00090.1 | 80.592 | 304 | 51 | 3 | 1 | 303 | 249 | 545 | 2.05e-153 | 447 |
| Msa1392160 | ATMG00080.1 | 92.617 | 149 | 11 | 0 | 301 | 449 | 31 | 179 | 8.69e-100 | 296 |
| Msa1392160 | ATCG00790.1 | 43.262 | 141 | 71 | 2 | 306 | 446 | 1 | 132 | 2.52e-30 | 114 |
| Msa1392160 | AT2G28815.1 | 39.855 | 138 | 73 | 2 | 309 | 446 | 161 | 288 | 1.57e-24 | 103 |
Find 96 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCTTGACCGACTCAATTA+AGG | 0.274241 | tig0021468:+102236 | None:intergenic |
| TAGGATAGGAGAGTGGATAA+AGG | 0.300160 | tig0021468:-102379 | Msa1392160:CDS |
| TCTATCCCTTGGAAAGAAAA+AGG | 0.310296 | tig0021468:+102533 | None:intergenic |
| TCTGTAGGTTTCCCGGTAAT+AGG | 0.319835 | tig0021468:+101646 | None:intergenic |
| ATCTCGCTCTTTCCTTTCTT+CGG | 0.326922 | tig0021468:-102561 | Msa1392160:CDS |
| AACCACTCCTAGGTCAATTA+AGG | 0.343790 | tig0021468:-102470 | Msa1392160:CDS |
| AGAACTGAATGCGGAAAGTA+TGG | 0.344053 | tig0021468:-102030 | Msa1392160:CDS |
| TCTTACTTCTGTAGGTTTCC+CGG | 0.347824 | tig0021468:+101639 | None:intergenic |
| TCACACCATCCATCTCAAAT+AGG | 0.352820 | tig0021468:+101557 | None:intergenic |
| GCAGCGCGTCGGGCTATAAT+CGG | 0.356269 | tig0021468:-101742 | Msa1392160:CDS |
| CTTCCCATTCTTACTTCTGT+AGG | 0.367519 | tig0021468:+101631 | None:intergenic |
| GACGGAACAAAACTTGGTTT+TGG | 0.368077 | tig0021468:-101820 | Msa1392160:CDS |
| CTGTAGGTTTCCCGGTAATA+GGG | 0.377454 | tig0021468:+101647 | None:intergenic |
| AGGATAGGAGAGTGGATAAA+GGG | 0.378697 | tig0021468:-102378 | Msa1392160:CDS |
| TTCGCGGATATCCCTATTAC+CGG | 0.380740 | tig0021468:-101658 | Msa1392160:CDS |
| TTACTAAATTTCGTACGTTT+CGG | 0.381592 | tig0021468:+101880 | None:intergenic |
| ATCGACCTGAACAACATATA+CGG | 0.401167 | tig0021468:+102073 | None:intergenic |
| ATTGACCTAGGAGTGGTTCC+CGG | 0.401889 | tig0021468:+102475 | None:intergenic |
| GGGATCCGTATATGTTGTTC+AGG | 0.409800 | tig0021468:-102078 | Msa1392160:CDS |
| GTAAGAATGGGAAGAGGAAA+AGG | 0.413374 | tig0021468:-101622 | Msa1392160:CDS |
| AGCCATTGAAGCAGCGCGTC+GGG | 0.426476 | tig0021468:-101752 | Msa1392160:CDS |
| TTGACCTAGGAGTGGTTCCC+GGG | 0.432663 | tig0021468:+102476 | None:intergenic |
| GGCGAATGATCTTCGCTTCG+CGG | 0.433386 | tig0021468:-102601 | Msa1392160:CDS |
| AGCCCGACGCGCTGCTTCAA+TGG | 0.434028 | tig0021468:+101750 | None:intergenic |
| TCTTTCCAAGGGATAGAGTT+GGG | 0.435381 | tig0021468:-102527 | Msa1392160:CDS |
| AAACCAGACGGAACAAAACT+TGG | 0.439255 | tig0021468:-101826 | Msa1392160:CDS |
| AAAGAGATGTCTTGAGCAAT+CGG | 0.449120 | tig0021468:+102189 | None:intergenic |
| GAACCTCATGGGTAAGGATA+AGG | 0.466814 | tig0021468:-102436 | Msa1392160:CDS |
| CGTAGTTCTCAATCATTTCG+TGG | 0.488294 | tig0021468:-102787 | Msa1392160:CDS |
| GTCAATTAAGGATCAAATGT+TGG | 0.491311 | tig0021468:-102458 | Msa1392160:CDS |
| CAGCGCGTCGGGCTATAATC+GGG | 0.492610 | tig0021468:-101741 | Msa1392160:CDS |
| TAAATCCCAACTCTATCCCT+TGG | 0.493622 | tig0021468:+102522 | None:intergenic |
| TCGTAAAGGCAGATGTAGTA+GGG | 0.502039 | tig0021468:-101854 | Msa1392160:CDS |
| ATCGTAAAGGCAGATGTAGT+AGG | 0.503173 | tig0021468:-101855 | Msa1392160:CDS |
| GATCAAATGTTGGAACCTCA+TGG | 0.504835 | tig0021468:-102448 | Msa1392160:CDS |
| CATGGGTAAGGATAAGGTAA+TGG | 0.506606 | tig0021468:-102430 | Msa1392160:CDS |
| GAAACCTACAGAAGTAAGAA+TGG | 0.508163 | tig0021468:-101635 | Msa1392160:CDS |
| TTCTTTCCAAGGGATAGAGT+TGG | 0.509332 | tig0021468:-102528 | Msa1392160:CDS |
| TGGATTGCTCGTGTGTCCGC+GGG | 0.514352 | tig0021468:-101586 | Msa1392160:CDS |
| GCGAATGATCTTCGCTTCGC+GGG | 0.518154 | tig0021468:-102600 | Msa1392160:CDS |
| GGCACTCAAAGTTGTAGAGC+TGG | 0.521006 | tig0021468:-101790 | Msa1392160:CDS |
| GTTGACCCACTTCATTCGCT+TGG | 0.526088 | tig0021468:-102622 | Msa1392160:CDS |
| TCGACAAGCCGCTACATTAG+CGG | 0.527972 | tig0021468:-101521 | Msa1392160:CDS |
| TTACGACCACTGAAGAAACT+TGG | 0.530957 | tig0021468:+101477 | None:intergenic |
| ATAAATTAATAGACCTAGGT+AGG | 0.531510 | tig0021468:-102398 | Msa1392160:CDS |
| CGTCAACCAAGTTTCTTCAG+TGG | 0.534492 | tig0021468:-101483 | Msa1392160:CDS |
| GCGGAAGTATCTACTCGTTA+CGG | 0.536532 | tig0021468:-101961 | Msa1392160:CDS |
| AGAAACTTGGTTGACGAACA+TGG | 0.537360 | tig0021468:+101490 | None:intergenic |
| TTAATAGACCTAGGTAGGAT+AGG | 0.540297 | tig0021468:-102393 | Msa1392160:CDS |
| ATGTTGGAACCTCATGGGTA+AGG | 0.552746 | tig0021468:-102442 | Msa1392160:CDS |
| AAACCTACAGAAGTAAGAAT+GGG | 0.554629 | tig0021468:-101634 | Msa1392160:CDS |
| ATCAAATGTTGGAACCTCAT+GGG | 0.555056 | tig0021468:-102447 | Msa1392160:CDS |
| TCATTTCGTGGCACCGAGCG+TGG | 0.556773 | tig0021468:-102775 | Msa1392160:CDS |
| TTGGATTGCTCGTGTGTCCG+CGG | 0.563811 | tig0021468:-101587 | Msa1392160:CDS |
| AAATGATTGAGAACTACGAC+GGG | 0.565022 | tig0021468:+102792 | None:intergenic |
| GAAAAGGAAATCCTACGGGT+TGG | 0.568282 | tig0021468:-101606 | Msa1392160:CDS |
| CACTAATACCTTAATTGAGT+CGG | 0.569119 | tig0021468:-102244 | Msa1392160:CDS |
| GTGGCTGAACCATCTACGAT+GGG | 0.569661 | tig0021468:-102756 | Msa1392160:CDS |
| ATCCTTAATTGACCTAGGAG+TGG | 0.570886 | tig0021468:+102468 | None:intergenic |
| AAATAAGAGTTGTACCCGTA+CGG | 0.572248 | tig0021468:+102312 | None:intergenic |
| TGTTGTTCAGGTCGATCAGA+AGG | 0.578167 | tig0021468:-102066 | Msa1392160:CDS |
| CAAGTCCTATTTGAGATGGA+TGG | 0.581302 | tig0021468:-101562 | Msa1392160:CDS |
| TCGCGGATATCCCTATTACC+GGG | 0.589700 | tig0021468:-101657 | Msa1392160:CDS |
| AAATTTAGTAAATATCGTAA+AGG | 0.590628 | tig0021468:-101868 | Msa1392160:CDS |
| ATTTGATCCTTAATTGACCT+AGG | 0.590937 | tig0021468:+102463 | None:intergenic |
| GAAAATAGATTATGCTTCTG+CGG | 0.597477 | tig0021468:-101980 | Msa1392160:CDS |
| GAGCCATTGAAGCAGCGCGT+CGG | 0.597659 | tig0021468:-101753 | Msa1392160:CDS |
| AAGAGGAAAAGGAAATCCTA+CGG | 0.598879 | tig0021468:-101611 | Msa1392160:CDS |
| GAATCTCAGGTGTCAAAGTG+TGG | 0.599914 | tig0021468:-101939 | Msa1392160:CDS |
| CTCAAATAGGACTTGTCCCG+CGG | 0.601115 | tig0021468:+101570 | None:intergenic |
| GGCTGAACCATCTACGATGG+GGG | 0.605072 | tig0021468:-102754 | Msa1392160:CDS |
| CGTGGCTGAACCATCTACGA+TGG | 0.609728 | tig0021468:-102757 | Msa1392160:CDS |
| ACAGAAGTAAGAATGGGAAG+AGG | 0.610829 | tig0021468:-101628 | Msa1392160:CDS |
| GTAGATGGTTCAGCCACGCT+CGG | 0.612998 | tig0021468:+102762 | None:intergenic |
| TCCACTCTCCTATCCTACCT+AGG | 0.613455 | tig0021468:+102385 | None:intergenic |
| CACTTCCATCGTGCTATGAG+CGG | 0.621046 | tig0021468:-101718 | Msa1392160:CDS |
| AGAGGAAAAGGAAATCCTAC+GGG | 0.621149 | tig0021468:-101610 | Msa1392160:CDS |
| GGGACAAGTCCTATTTGAGA+TGG | 0.625965 | tig0021468:-101566 | Msa1392160:CDS |
| GAAAGGAAAGAGCGAGATGG+TGG | 0.626386 | tig0021468:+102566 | None:intergenic |
| TTCAACTGAGAAAGAAAACA+AGG | 0.626533 | tig0021468:-102167 | Msa1392160:CDS |
| CATTCGCCAAGCGAATGAAG+TGG | 0.629674 | tig0021468:+102616 | None:intergenic |
| TTACCTTATCCTTACCCATG+AGG | 0.635880 | tig0021468:+102433 | None:intergenic |
| ATTCGCCAAGCGAATGAAGT+GGG | 0.636771 | tig0021468:+102617 | None:intergenic |
| TGGCTGAACCATCTACGATG+GGG | 0.648204 | tig0021468:-102755 | Msa1392160:CDS |
| TTTATGCGCCGCTAATGTAG+CGG | 0.653441 | tig0021468:+101513 | None:intergenic |
| ATAGATAAATTAATAGACCT+AGG | 0.655578 | tig0021468:-102402 | Msa1392160:CDS |
| GAAGAAAGGAAAGAGCGAGA+TGG | 0.656441 | tig0021468:+102563 | None:intergenic |
| CGTAAAGGCAGATGTAGTAG+GGG | 0.659435 | tig0021468:-101853 | Msa1392160:CDS |
| GAAATAGCTAGAACTGAATG+CGG | 0.667010 | tig0021468:-102039 | Msa1392160:CDS |
| ACCTAGGTAGGATAGGAGAG+TGG | 0.667288 | tig0021468:-102386 | Msa1392160:CDS |
| GAAATGATTGAGAACTACGA+CGG | 0.668130 | tig0021468:+102791 | None:intergenic |
| GCTGAACCATCTACGATGGG+GGG | 0.674581 | tig0021468:-102753 | Msa1392160:CDS |
| AGTAGGGGTTGCAAACCAGA+CGG | 0.679566 | tig0021468:-101838 | Msa1392160:CDS |
| ACACGAGCAATCCAACCCGT+AGG | 0.687300 | tig0021468:+101595 | None:intergenic |
| ATTGTCCGCTCATAGCACGA+TGG | 0.729881 | tig0021468:+101713 | None:intergenic |
| AATGATTGAGAACTACGACG+GGG | 0.830076 | tig0021468:+102793 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCATATAGTAAAAAAAAA+AGG | - | tig0021468:102366-102385 | Msa1392160:CDS | 10.0% |
| !! | TTCATATAGTAAAAAAAAAA+GGG | - | tig0021468:102367-102386 | Msa1392160:CDS | 10.0% |
| !! | TTTCATATAGTAAAAAAAAA+AGG | - | tig0021468:102366-102385 | Msa1392160:CDS | 10.0% |
| !! | TTCATATAGTAAAAAAAAAA+GGG | - | tig0021468:102367-102386 | Msa1392160:CDS | 10.0% |
| !! | AAATTTAGTAAATATCGTAA+AGG | - | tig0021468:102413-102432 | Msa1392160:CDS | 15.0% |
| !! | AAATTTAGTAAATATCGTAA+AGG | - | tig0021468:102413-102432 | Msa1392160:CDS | 15.0% |
| !!! | TTATAAGAACCTTTTTTTTG+AGG | - | tig0021468:101779-101798 | Msa1392160:CDS | 20.0% |
| !! | ATAGATAAATTAATAGACCT+AGG | - | tig0021468:101879-101898 | Msa1392160:CDS | 20.0% |
| !! | ATTCCATTAGTAATGAAAAA+AGG | - | tig0021468:102173-102192 | Msa1392160:CDS | 20.0% |
| !! | TTCCATTAGTAATGAAAAAA+GGG | - | tig0021468:102174-102193 | Msa1392160:CDS | 20.0% |
| !!! | TTATAAGAACCTTTTTTTTG+AGG | - | tig0021468:101779-101798 | Msa1392160:CDS | 20.0% |
| !! | ATAGATAAATTAATAGACCT+AGG | - | tig0021468:101879-101898 | Msa1392160:CDS | 20.0% |
| !! | ATTCCATTAGTAATGAAAAA+AGG | - | tig0021468:102173-102192 | Msa1392160:CDS | 20.0% |
| !! | TTCCATTAGTAATGAAAAAA+GGG | - | tig0021468:102174-102193 | Msa1392160:CDS | 20.0% |
| ! | ATAAATTAATAGACCTAGGT+AGG | - | tig0021468:101883-101902 | Msa1392160:CDS | 25.0% |
| ! | CTTCACTATTCTACTAAAAA+TGG | + | tig0021468:102150-102169 | None:intergenic | 25.0% |
| !!! | CATTTTTAGTAGAATAGTGA+AGG | - | tig0021468:102148-102167 | Msa1392160:CDS | 25.0% |
| ! | TCCATTAGTAATGAAAAAAG+GGG | - | tig0021468:102175-102194 | Msa1392160:CDS | 25.0% |
| ! | TTACTAAATTTCGTACGTTT+CGG | + | tig0021468:102404-102423 | None:intergenic | 25.0% |
| ! | ATAAATTAATAGACCTAGGT+AGG | - | tig0021468:101883-101902 | Msa1392160:CDS | 25.0% |
| ! | CTTCACTATTCTACTAAAAA+TGG | + | tig0021468:102150-102169 | None:intergenic | 25.0% |
| !!! | CATTTTTAGTAGAATAGTGA+AGG | - | tig0021468:102148-102167 | Msa1392160:CDS | 25.0% |
| ! | TCCATTAGTAATGAAAAAAG+GGG | - | tig0021468:102175-102194 | Msa1392160:CDS | 25.0% |
| ! | TTACTAAATTTCGTACGTTT+CGG | + | tig0021468:102404-102423 | None:intergenic | 25.0% |
| ATTTGATCCTTAATTGACCT+AGG | + | tig0021468:101821-101840 | None:intergenic | 30.0% | |
| GTCAATTAAGGATCAAATGT+TGG | - | tig0021468:101823-101842 | Msa1392160:CDS | 30.0% | |
| AGAAACAGAAAAATTCCGTA+CGG | - | tig0021468:101954-101973 | Msa1392160:CDS | 30.0% | |
| CACTAATACCTTAATTGAGT+CGG | - | tig0021468:102037-102056 | Msa1392160:CDS | 30.0% | |
| TTCAACTGAGAAAGAAAACA+AGG | - | tig0021468:102114-102133 | Msa1392160:CDS | 30.0% | |
| !!! | ACCCCTTTTTTCATTACTAA+TGG | + | tig0021468:102179-102198 | None:intergenic | 30.0% |
| !! | CAGAAGCATAATCTATTTTC+TGG | + | tig0021468:102301-102320 | None:intergenic | 30.0% |
| GAAAATAGATTATGCTTCTG+CGG | - | tig0021468:102301-102320 | Msa1392160:CDS | 30.0% | |
| !!! | AAACTTGGTTTTGGAAGATA+TGG | - | tig0021468:102470-102489 | Msa1392160:CDS | 30.0% |
| TCCGAAAAAATGGTAAGATA+TGG | - | tig0021468:102591-102610 | Msa1392160:CDS | 30.0% | |
| !!! | CCCATATCTTACCATTTTTT+CGG | + | tig0021468:102595-102614 | None:intergenic | 30.0% |
| CCGAAAAAATGGTAAGATAT+GGG | - | tig0021468:102592-102611 | Msa1392160:CDS | 30.0% | |
| AAACCTACAGAAGTAAGAAT+GGG | - | tig0021468:102647-102666 | Msa1392160:CDS | 30.0% | |
| ATTTGATCCTTAATTGACCT+AGG | + | tig0021468:101821-101840 | None:intergenic | 30.0% | |
| GTCAATTAAGGATCAAATGT+TGG | - | tig0021468:101823-101842 | Msa1392160:CDS | 30.0% | |
| AGAAACAGAAAAATTCCGTA+CGG | - | tig0021468:101954-101973 | Msa1392160:CDS | 30.0% | |
| CACTAATACCTTAATTGAGT+CGG | - | tig0021468:102037-102056 | Msa1392160:CDS | 30.0% | |
| TTCAACTGAGAAAGAAAACA+AGG | - | tig0021468:102114-102133 | Msa1392160:CDS | 30.0% | |
| !!! | ACCCCTTTTTTCATTACTAA+TGG | + | tig0021468:102179-102198 | None:intergenic | 30.0% |
| !! | CAGAAGCATAATCTATTTTC+TGG | + | tig0021468:102301-102320 | None:intergenic | 30.0% |
| GAAAATAGATTATGCTTCTG+CGG | - | tig0021468:102301-102320 | Msa1392160:CDS | 30.0% | |
| !!! | AAACTTGGTTTTGGAAGATA+TGG | - | tig0021468:102470-102489 | Msa1392160:CDS | 30.0% |
| TCCGAAAAAATGGTAAGATA+TGG | - | tig0021468:102591-102610 | Msa1392160:CDS | 30.0% | |
| !!! | CCCATATCTTACCATTTTTT+CGG | + | tig0021468:102595-102614 | None:intergenic | 30.0% |
| CCGAAAAAATGGTAAGATAT+GGG | - | tig0021468:102592-102611 | Msa1392160:CDS | 30.0% | |
| AAACCTACAGAAGTAAGAAT+GGG | - | tig0021468:102647-102666 | Msa1392160:CDS | 30.0% | |
| AAATGATTGAGAACTACGAC+GGG | + | tig0021468:101492-101511 | None:intergenic | 35.0% | |
| GAAATGATTGAGAACTACGA+CGG | + | tig0021468:101493-101512 | None:intergenic | 35.0% | |
| ! | TGCTACCTTTTTCTTTCCAA+GGG | - | tig0021468:101743-101762 | Msa1392160:CDS | 35.0% |
| TCTATCCCTTGGAAAGAAAA+AGG | + | tig0021468:101751-101770 | None:intergenic | 35.0% | |
| ATCAAATGTTGGAACCTCAT+GGG | - | tig0021468:101834-101853 | Msa1392160:CDS | 35.0% | |
| TTAATAGACCTAGGTAGGAT+AGG | - | tig0021468:101888-101907 | Msa1392160:CDS | 35.0% | |
| GAAACAGAAAAATTCCGTAC+GGG | - | tig0021468:101955-101974 | Msa1392160:CDS | 35.0% | |
| AAATAAGAGTTGTACCCGTA+CGG | + | tig0021468:101972-101991 | None:intergenic | 35.0% | |
| AAAGAGATGTCTTGAGCAAT+CGG | + | tig0021468:102095-102114 | None:intergenic | 35.0% | |
| AGTAATGAAAAAAGGGGTTG+AGG | - | tig0021468:102181-102200 | Msa1392160:CDS | 35.0% | |
| GTAATGAAAAAAGGGGTTGA+GGG | - | tig0021468:102182-102201 | Msa1392160:CDS | 35.0% | |
| TAATGAAAAAAGGGGTTGAG+GGG | - | tig0021468:102183-102202 | Msa1392160:CDS | 35.0% | |
| ATCGACCTGAACAACATATA+CGG | + | tig0021468:102211-102230 | None:intergenic | 35.0% | |
| GAAATAGCTAGAACTGAATG+CGG | - | tig0021468:102242-102261 | Msa1392160:CDS | 35.0% | |
| GAAACCTACAGAAGTAAGAA+TGG | - | tig0021468:102646-102665 | Msa1392160:CDS | 35.0% | |
| AAGAGGAAAAGGAAATCCTA+CGG | - | tig0021468:102670-102689 | Msa1392160:CDS | 35.0% | |
| AAATGATTGAGAACTACGAC+GGG | + | tig0021468:101492-101511 | None:intergenic | 35.0% | |
| GAAATGATTGAGAACTACGA+CGG | + | tig0021468:101493-101512 | None:intergenic | 35.0% | |
| ! | TGCTACCTTTTTCTTTCCAA+GGG | - | tig0021468:101743-101762 | Msa1392160:CDS | 35.0% |
| TCTATCCCTTGGAAAGAAAA+AGG | + | tig0021468:101751-101770 | None:intergenic | 35.0% | |
| ATCAAATGTTGGAACCTCAT+GGG | - | tig0021468:101834-101853 | Msa1392160:CDS | 35.0% | |
| TTAATAGACCTAGGTAGGAT+AGG | - | tig0021468:101888-101907 | Msa1392160:CDS | 35.0% | |
| GAAACAGAAAAATTCCGTAC+GGG | - | tig0021468:101955-101974 | Msa1392160:CDS | 35.0% | |
| AAATAAGAGTTGTACCCGTA+CGG | + | tig0021468:101972-101991 | None:intergenic | 35.0% | |
| AAAGAGATGTCTTGAGCAAT+CGG | + | tig0021468:102095-102114 | None:intergenic | 35.0% | |
| AGTAATGAAAAAAGGGGTTG+AGG | - | tig0021468:102181-102200 | Msa1392160:CDS | 35.0% | |
| GTAATGAAAAAAGGGGTTGA+GGG | - | tig0021468:102182-102201 | Msa1392160:CDS | 35.0% | |
| TAATGAAAAAAGGGGTTGAG+GGG | - | tig0021468:102183-102202 | Msa1392160:CDS | 35.0% | |
| ATCGACCTGAACAACATATA+CGG | + | tig0021468:102211-102230 | None:intergenic | 35.0% | |
| GAAATAGCTAGAACTGAATG+CGG | - | tig0021468:102242-102261 | Msa1392160:CDS | 35.0% | |
| GAAACCTACAGAAGTAAGAA+TGG | - | tig0021468:102646-102665 | Msa1392160:CDS | 35.0% | |
| AAGAGGAAAAGGAAATCCTA+CGG | - | tig0021468:102670-102689 | Msa1392160:CDS | 35.0% | |
| AATGATTGAGAACTACGACG+GGG | + | tig0021468:101491-101510 | None:intergenic | 40.0% | |
| CGTAGTTCTCAATCATTTCG+TGG | - | tig0021468:101494-101513 | Msa1392160:CDS | 40.0% | |
| ATCTCGCTCTTTCCTTTCTT+CGG | - | tig0021468:101720-101739 | Msa1392160:CDS | 40.0% | |
| ! | AAAAAGGTAGCACCGAAGAA+AGG | + | tig0021468:101735-101754 | None:intergenic | 40.0% |
| ! | GTGCTACCTTTTTCTTTCCA+AGG | - | tig0021468:101742-101761 | Msa1392160:CDS | 40.0% |
| TTCTTTCCAAGGGATAGAGT+TGG | - | tig0021468:101753-101772 | Msa1392160:CDS | 40.0% | |
| TCTTTCCAAGGGATAGAGTT+GGG | - | tig0021468:101754-101773 | Msa1392160:CDS | 40.0% | |
| TAAATCCCAACTCTATCCCT+TGG | + | tig0021468:101762-101781 | None:intergenic | 40.0% | |
| !!! | ACCTTTTTTTTGAGGATGCC+CGG | - | tig0021468:101787-101806 | Msa1392160:CDS | 40.0% |
| AACCACTCCTAGGTCAATTA+AGG | - | tig0021468:101811-101830 | Msa1392160:CDS | 40.0% | |
| ATCCTTAATTGACCTAGGAG+TGG | + | tig0021468:101816-101835 | None:intergenic | 40.0% | |
| GATCAAATGTTGGAACCTCA+TGG | - | tig0021468:101833-101852 | Msa1392160:CDS | 40.0% | |
| TTACCTTATCCTTACCCATG+AGG | + | tig0021468:101851-101870 | None:intergenic | 40.0% | |
| CATGGGTAAGGATAAGGTAA+TGG | - | tig0021468:101851-101870 | Msa1392160:CDS | 40.0% | |
| TAGGATAGGAGAGTGGATAA+AGG | - | tig0021468:101902-101921 | Msa1392160:CDS | 40.0% | |
| AGGATAGGAGAGTGGATAAA+GGG | - | tig0021468:101903-101922 | Msa1392160:CDS | 40.0% | |
| ! | GATCTTGACCGACTCAATTA+AGG | + | tig0021468:102048-102067 | None:intergenic | 40.0% |
| AGAACTGAATGCGGAAAGTA+TGG | - | tig0021468:102251-102270 | Msa1392160:CDS | 40.0% | |
| ATCGTAAAGGCAGATGTAGT+AGG | - | tig0021468:102426-102445 | Msa1392160:CDS | 40.0% | |
| TCGTAAAGGCAGATGTAGTA+GGG | - | tig0021468:102427-102446 | Msa1392160:CDS | 40.0% | |
| AAACCAGACGGAACAAAACT+TGG | - | tig0021468:102455-102474 | Msa1392160:CDS | 40.0% | |
| !!! | AAACCAAGTTTTGTTCCGTC+TGG | + | tig0021468:102461-102480 | None:intergenic | 40.0% |
| ! | GACGGAACAAAACTTGGTTT+TGG | - | tig0021468:102461-102480 | Msa1392160:CDS | 40.0% |
| AGCGGACAATTCCGAAAAAA+TGG | - | tig0021468:102581-102600 | Msa1392160:CDS | 40.0% | |
| ! | GATATGGGTAAGAGTTTTCG+CGG | - | tig0021468:102607-102626 | Msa1392160:CDS | 40.0% |
| TCTTACTTCTGTAGGTTTCC+CGG | + | tig0021468:102645-102664 | None:intergenic | 40.0% | |
| CTTCCCATTCTTACTTCTGT+AGG | + | tig0021468:102653-102672 | None:intergenic | 40.0% | |
| ACAGAAGTAAGAATGGGAAG+AGG | - | tig0021468:102653-102672 | Msa1392160:CDS | 40.0% | |
| GTAAGAATGGGAAGAGGAAA+AGG | - | tig0021468:102659-102678 | Msa1392160:CDS | 40.0% | |
| AGAGGAAAAGGAAATCCTAC+GGG | - | tig0021468:102671-102690 | Msa1392160:CDS | 40.0% | |
| ! | CAAGTCCTATTTGAGATGGA+TGG | - | tig0021468:102719-102738 | Msa1392160:CDS | 40.0% |
| TCACACCATCCATCTCAAAT+AGG | + | tig0021468:102727-102746 | None:intergenic | 40.0% | |
| AGAAACTTGGTTGACGAACA+TGG | + | tig0021468:102794-102813 | None:intergenic | 40.0% | |
| TTACGACCACTGAAGAAACT+TGG | + | tig0021468:102807-102826 | None:intergenic | 40.0% | |
| AATGATTGAGAACTACGACG+GGG | + | tig0021468:101491-101510 | None:intergenic | 40.0% | |
| CGTAGTTCTCAATCATTTCG+TGG | - | tig0021468:101494-101513 | Msa1392160:CDS | 40.0% | |
| ATCTCGCTCTTTCCTTTCTT+CGG | - | tig0021468:101720-101739 | Msa1392160:CDS | 40.0% | |
| ! | AAAAAGGTAGCACCGAAGAA+AGG | + | tig0021468:101735-101754 | None:intergenic | 40.0% |
| ! | GTGCTACCTTTTTCTTTCCA+AGG | - | tig0021468:101742-101761 | Msa1392160:CDS | 40.0% |
| TTCTTTCCAAGGGATAGAGT+TGG | - | tig0021468:101753-101772 | Msa1392160:CDS | 40.0% | |
| TCTTTCCAAGGGATAGAGTT+GGG | - | tig0021468:101754-101773 | Msa1392160:CDS | 40.0% | |
| TAAATCCCAACTCTATCCCT+TGG | + | tig0021468:101762-101781 | None:intergenic | 40.0% | |
| !!! | ACCTTTTTTTTGAGGATGCC+CGG | - | tig0021468:101787-101806 | Msa1392160:CDS | 40.0% |
| AACCACTCCTAGGTCAATTA+AGG | - | tig0021468:101811-101830 | Msa1392160:CDS | 40.0% | |
| ATCCTTAATTGACCTAGGAG+TGG | + | tig0021468:101816-101835 | None:intergenic | 40.0% | |
| GATCAAATGTTGGAACCTCA+TGG | - | tig0021468:101833-101852 | Msa1392160:CDS | 40.0% | |
| TTACCTTATCCTTACCCATG+AGG | + | tig0021468:101851-101870 | None:intergenic | 40.0% | |
| CATGGGTAAGGATAAGGTAA+TGG | - | tig0021468:101851-101870 | Msa1392160:CDS | 40.0% | |
| TAGGATAGGAGAGTGGATAA+AGG | - | tig0021468:101902-101921 | Msa1392160:CDS | 40.0% | |
| AGGATAGGAGAGTGGATAAA+GGG | - | tig0021468:101903-101922 | Msa1392160:CDS | 40.0% | |
| ! | GATCTTGACCGACTCAATTA+AGG | + | tig0021468:102048-102067 | None:intergenic | 40.0% |
| AGAACTGAATGCGGAAAGTA+TGG | - | tig0021468:102251-102270 | Msa1392160:CDS | 40.0% | |
| ATCGTAAAGGCAGATGTAGT+AGG | - | tig0021468:102426-102445 | Msa1392160:CDS | 40.0% | |
| TCGTAAAGGCAGATGTAGTA+GGG | - | tig0021468:102427-102446 | Msa1392160:CDS | 40.0% | |
| AAACCAGACGGAACAAAACT+TGG | - | tig0021468:102455-102474 | Msa1392160:CDS | 40.0% | |
| !!! | AAACCAAGTTTTGTTCCGTC+TGG | + | tig0021468:102461-102480 | None:intergenic | 40.0% |
| ! | GACGGAACAAAACTTGGTTT+TGG | - | tig0021468:102461-102480 | Msa1392160:CDS | 40.0% |
| AGCGGACAATTCCGAAAAAA+TGG | - | tig0021468:102581-102600 | Msa1392160:CDS | 40.0% | |
| ! | GATATGGGTAAGAGTTTTCG+CGG | - | tig0021468:102607-102626 | Msa1392160:CDS | 40.0% |
| TCTTACTTCTGTAGGTTTCC+CGG | + | tig0021468:102645-102664 | None:intergenic | 40.0% | |
| CTTCCCATTCTTACTTCTGT+AGG | + | tig0021468:102653-102672 | None:intergenic | 40.0% | |
| ACAGAAGTAAGAATGGGAAG+AGG | - | tig0021468:102653-102672 | Msa1392160:CDS | 40.0% | |
| GTAAGAATGGGAAGAGGAAA+AGG | - | tig0021468:102659-102678 | Msa1392160:CDS | 40.0% | |
| AGAGGAAAAGGAAATCCTAC+GGG | - | tig0021468:102671-102690 | Msa1392160:CDS | 40.0% | |
| ! | CAAGTCCTATTTGAGATGGA+TGG | - | tig0021468:102719-102738 | Msa1392160:CDS | 40.0% |
| TCACACCATCCATCTCAAAT+AGG | + | tig0021468:102727-102746 | None:intergenic | 40.0% | |
| AGAAACTTGGTTGACGAACA+TGG | + | tig0021468:102794-102813 | None:intergenic | 40.0% | |
| TTACGACCACTGAAGAAACT+TGG | + | tig0021468:102807-102826 | None:intergenic | 40.0% | |
| !! | GACCAGCGAGAAAAAGTGTT+TGG | - | tig0021468:101620-101639 | Msa1392160:CDS | 45.0% |
| !!! | GGTCAACCTCTTTTTGGCTT+CGG | + | tig0021468:101646-101665 | None:intergenic | 45.0% |
| ! | GAAGTGGGTCAACCTCTTTT+TGG | + | tig0021468:101652-101671 | None:intergenic | 45.0% |
| ATTCGCCAAGCGAATGAAGT+GGG | + | tig0021468:101667-101686 | None:intergenic | 45.0% | |
| GAAGAAAGGAAAGAGCGAGA+TGG | + | tig0021468:101721-101740 | None:intergenic | 45.0% | |
| !!! | CCTTTTTTTTGAGGATGCCC+GGG | - | tig0021468:101788-101807 | Msa1392160:CDS | 45.0% |
| ATGTTGGAACCTCATGGGTA+AGG | - | tig0021468:101839-101858 | Msa1392160:CDS | 45.0% | |
| GAACCTCATGGGTAAGGATA+AGG | - | tig0021468:101845-101864 | Msa1392160:CDS | 45.0% | |
| GGGATCCGTATATGTTGTTC+AGG | - | tig0021468:102203-102222 | Msa1392160:CDS | 45.0% | |
| TGTTGTTCAGGTCGATCAGA+AGG | - | tig0021468:102215-102234 | Msa1392160:CDS | 45.0% | |
| !! | GCGGAAGTATCTACTCGTTA+CGG | - | tig0021468:102320-102339 | Msa1392160:CDS | 45.0% |
| TCTACTCGTTACGGAATCTC+AGG | - | tig0021468:102329-102348 | Msa1392160:CDS | 45.0% | |
| GAATCTCAGGTGTCAAAGTG+TGG | - | tig0021468:102342-102361 | Msa1392160:CDS | 45.0% | |
| CGTAAAGGCAGATGTAGTAG+GGG | - | tig0021468:102428-102447 | Msa1392160:CDS | 45.0% | |
| TTCGCGGATATCCCTATTAC+CGG | - | tig0021468:102623-102642 | Msa1392160:CDS | 45.0% | |
| CTGTAGGTTTCCCGGTAATA+GGG | + | tig0021468:102637-102656 | None:intergenic | 45.0% | |
| TCTGTAGGTTTCCCGGTAAT+AGG | + | tig0021468:102638-102657 | None:intergenic | 45.0% | |
| GAAAAGGAAATCCTACGGGT+TGG | - | tig0021468:102675-102694 | Msa1392160:CDS | 45.0% | |
| GGGACAAGTCCTATTTGAGA+TGG | - | tig0021468:102715-102734 | Msa1392160:CDS | 45.0% | |
| TTTATGCGCCGCTAATGTAG+CGG | + | tig0021468:102771-102790 | None:intergenic | 45.0% | |
| CGTCAACCAAGTTTCTTCAG+TGG | - | tig0021468:102798-102817 | Msa1392160:CDS | 45.0% | |
| !! | GACCAGCGAGAAAAAGTGTT+TGG | - | tig0021468:101620-101639 | Msa1392160:CDS | 45.0% |
| !!! | GGTCAACCTCTTTTTGGCTT+CGG | + | tig0021468:101646-101665 | None:intergenic | 45.0% |
| ! | GAAGTGGGTCAACCTCTTTT+TGG | + | tig0021468:101652-101671 | None:intergenic | 45.0% |
| ATTCGCCAAGCGAATGAAGT+GGG | + | tig0021468:101667-101686 | None:intergenic | 45.0% | |
| GAAGAAAGGAAAGAGCGAGA+TGG | + | tig0021468:101721-101740 | None:intergenic | 45.0% | |
| !!! | CCTTTTTTTTGAGGATGCCC+GGG | - | tig0021468:101788-101807 | Msa1392160:CDS | 45.0% |
| ATGTTGGAACCTCATGGGTA+AGG | - | tig0021468:101839-101858 | Msa1392160:CDS | 45.0% | |
| GAACCTCATGGGTAAGGATA+AGG | - | tig0021468:101845-101864 | Msa1392160:CDS | 45.0% | |
| GGGATCCGTATATGTTGTTC+AGG | - | tig0021468:102203-102222 | Msa1392160:CDS | 45.0% | |
| TGTTGTTCAGGTCGATCAGA+AGG | - | tig0021468:102215-102234 | Msa1392160:CDS | 45.0% | |
| !! | GCGGAAGTATCTACTCGTTA+CGG | - | tig0021468:102320-102339 | Msa1392160:CDS | 45.0% |
| TCTACTCGTTACGGAATCTC+AGG | - | tig0021468:102329-102348 | Msa1392160:CDS | 45.0% | |
| GAATCTCAGGTGTCAAAGTG+TGG | - | tig0021468:102342-102361 | Msa1392160:CDS | 45.0% | |
| CGTAAAGGCAGATGTAGTAG+GGG | - | tig0021468:102428-102447 | Msa1392160:CDS | 45.0% | |
| TTCGCGGATATCCCTATTAC+CGG | - | tig0021468:102623-102642 | Msa1392160:CDS | 45.0% | |
| CTGTAGGTTTCCCGGTAATA+GGG | + | tig0021468:102637-102656 | None:intergenic | 45.0% | |
| TCTGTAGGTTTCCCGGTAAT+AGG | + | tig0021468:102638-102657 | None:intergenic | 45.0% | |
| GAAAAGGAAATCCTACGGGT+TGG | - | tig0021468:102675-102694 | Msa1392160:CDS | 45.0% | |
| GGGACAAGTCCTATTTGAGA+TGG | - | tig0021468:102715-102734 | Msa1392160:CDS | 45.0% | |
| TTTATGCGCCGCTAATGTAG+CGG | + | tig0021468:102771-102790 | None:intergenic | 45.0% | |
| CGTCAACCAAGTTTCTTCAG+TGG | - | tig0021468:102798-102817 | Msa1392160:CDS | 45.0% | |
| GTGGCTGAACCATCTACGAT+GGG | - | tig0021468:101525-101544 | Msa1392160:CDS | 50.0% | |
| TGGCTGAACCATCTACGATG+GGG | - | tig0021468:101526-101545 | Msa1392160:CDS | 50.0% | |
| !!! | GGCCAAACACTTTTTCTCGC+TGG | + | tig0021468:101625-101644 | None:intergenic | 50.0% |
| GTTTGGCCGAAGCCAAAAAG+AGG | - | tig0021468:101637-101656 | Msa1392160:CDS | 50.0% | |
| GTTGACCCACTTCATTCGCT+TGG | - | tig0021468:101659-101678 | Msa1392160:CDS | 50.0% | |
| CATTCGCCAAGCGAATGAAG+TGG | + | tig0021468:101668-101687 | None:intergenic | 50.0% | |
| GAAAGGAAAGAGCGAGATGG+TGG | + | tig0021468:101718-101737 | None:intergenic | 50.0% | |
| CCCGGGCATCCTCAAAAAAA+AGG | + | tig0021468:101791-101810 | None:intergenic | 50.0% | |
| ATTGACCTAGGAGTGGTTCC+CGG | + | tig0021468:101809-101828 | None:intergenic | 50.0% | |
| ACCTAGGTAGGATAGGAGAG+TGG | - | tig0021468:101895-101914 | Msa1392160:CDS | 50.0% | |
| TCCACTCTCCTATCCTACCT+AGG | + | tig0021468:101899-101918 | None:intergenic | 50.0% | |
| AGTAGGGGTTGCAAACCAGA+CGG | - | tig0021468:102443-102462 | Msa1392160:CDS | 50.0% | |
| GGCACTCAAAGTTGTAGAGC+TGG | - | tig0021468:102491-102510 | Msa1392160:CDS | 50.0% | |
| CACTTCCATCGTGCTATGAG+CGG | - | tig0021468:102563-102582 | Msa1392160:CDS | 50.0% | |
| ATTGTCCGCTCATAGCACGA+TGG | + | tig0021468:102571-102590 | None:intergenic | 50.0% | |
| TCGCGGATATCCCTATTACC+GGG | - | tig0021468:102624-102643 | Msa1392160:CDS | 50.0% | |
| CTCAAATAGGACTTGTCCCG+CGG | + | tig0021468:102714-102733 | None:intergenic | 50.0% | |
| TCGACAAGCCGCTACATTAG+CGG | - | tig0021468:102760-102779 | Msa1392160:CDS | 50.0% | |
| GTGGCTGAACCATCTACGAT+GGG | - | tig0021468:101525-101544 | Msa1392160:CDS | 50.0% | |
| TGGCTGAACCATCTACGATG+GGG | - | tig0021468:101526-101545 | Msa1392160:CDS | 50.0% | |
| !!! | GGCCAAACACTTTTTCTCGC+TGG | + | tig0021468:101625-101644 | None:intergenic | 50.0% |
| GTTTGGCCGAAGCCAAAAAG+AGG | - | tig0021468:101637-101656 | Msa1392160:CDS | 50.0% | |
| GTTGACCCACTTCATTCGCT+TGG | - | tig0021468:101659-101678 | Msa1392160:CDS | 50.0% | |
| CATTCGCCAAGCGAATGAAG+TGG | + | tig0021468:101668-101687 | None:intergenic | 50.0% | |
| GAAAGGAAAGAGCGAGATGG+TGG | + | tig0021468:101718-101737 | None:intergenic | 50.0% | |
| CCCGGGCATCCTCAAAAAAA+AGG | + | tig0021468:101791-101810 | None:intergenic | 50.0% | |
| ATTGACCTAGGAGTGGTTCC+CGG | + | tig0021468:101809-101828 | None:intergenic | 50.0% | |
| ACCTAGGTAGGATAGGAGAG+TGG | - | tig0021468:101895-101914 | Msa1392160:CDS | 50.0% | |
| TCCACTCTCCTATCCTACCT+AGG | + | tig0021468:101899-101918 | None:intergenic | 50.0% | |
| AGTAGGGGTTGCAAACCAGA+CGG | - | tig0021468:102443-102462 | Msa1392160:CDS | 50.0% | |
| GGCACTCAAAGTTGTAGAGC+TGG | - | tig0021468:102491-102510 | Msa1392160:CDS | 50.0% | |
| CACTTCCATCGTGCTATGAG+CGG | - | tig0021468:102563-102582 | Msa1392160:CDS | 50.0% | |
| ATTGTCCGCTCATAGCACGA+TGG | + | tig0021468:102571-102590 | None:intergenic | 50.0% | |
| TCGCGGATATCCCTATTACC+GGG | - | tig0021468:102624-102643 | Msa1392160:CDS | 50.0% | |
| CTCAAATAGGACTTGTCCCG+CGG | + | tig0021468:102714-102733 | None:intergenic | 50.0% | |
| TCGACAAGCCGCTACATTAG+CGG | - | tig0021468:102760-102779 | Msa1392160:CDS | 50.0% | |
| GTAGATGGTTCAGCCACGCT+CGG | + | tig0021468:101522-101541 | None:intergenic | 55.0% | |
| CGTGGCTGAACCATCTACGA+TGG | - | tig0021468:101524-101543 | Msa1392160:CDS | 55.0% | |
| GGCTGAACCATCTACGATGG+GGG | - | tig0021468:101527-101546 | Msa1392160:CDS | 55.0% | |
| GCTGAACCATCTACGATGGG+GGG | - | tig0021468:101528-101547 | Msa1392160:CDS | 55.0% | |
| GGCGAATGATCTTCGCTTCG+CGG | - | tig0021468:101680-101699 | Msa1392160:CDS | 55.0% | |
| GCGAATGATCTTCGCTTCGC+GGG | - | tig0021468:101681-101700 | Msa1392160:CDS | 55.0% | |
| TTGACCTAGGAGTGGTTCCC+GGG | + | tig0021468:101808-101827 | None:intergenic | 55.0% | |
| ACACGAGCAATCCAACCCGT+AGG | + | tig0021468:102689-102708 | None:intergenic | 55.0% | |
| TTGGATTGCTCGTGTGTCCG+CGG | - | tig0021468:102694-102713 | Msa1392160:CDS | 55.0% | |
| GTAGATGGTTCAGCCACGCT+CGG | + | tig0021468:101522-101541 | None:intergenic | 55.0% | |
| CGTGGCTGAACCATCTACGA+TGG | - | tig0021468:101524-101543 | Msa1392160:CDS | 55.0% | |
| GGCTGAACCATCTACGATGG+GGG | - | tig0021468:101527-101546 | Msa1392160:CDS | 55.0% | |
| GCTGAACCATCTACGATGGG+GGG | - | tig0021468:101528-101547 | Msa1392160:CDS | 55.0% | |
| GGCGAATGATCTTCGCTTCG+CGG | - | tig0021468:101680-101699 | Msa1392160:CDS | 55.0% | |
| GCGAATGATCTTCGCTTCGC+GGG | - | tig0021468:101681-101700 | Msa1392160:CDS | 55.0% | |
| TTGACCTAGGAGTGGTTCCC+GGG | + | tig0021468:101808-101827 | None:intergenic | 55.0% | |
| ACACGAGCAATCCAACCCGT+AGG | + | tig0021468:102689-102708 | None:intergenic | 55.0% | |
| TTGGATTGCTCGTGTGTCCG+CGG | - | tig0021468:102694-102713 | Msa1392160:CDS | 55.0% | |
| ! | TCATTTCGTGGCACCGAGCG+TGG | - | tig0021468:101506-101525 | Msa1392160:CDS | 60.0% |
| TTCGCTCCCCCCATCGTAGA+TGG | + | tig0021468:101537-101556 | None:intergenic | 60.0% | |
| GAGCCATTGAAGCAGCGCGT+CGG | - | tig0021468:102528-102547 | Msa1392160:CDS | 60.0% | |
| AGCCATTGAAGCAGCGCGTC+GGG | - | tig0021468:102529-102548 | Msa1392160:CDS | 60.0% | |
| GCAGCGCGTCGGGCTATAAT+CGG | - | tig0021468:102539-102558 | Msa1392160:CDS | 60.0% | |
| CAGCGCGTCGGGCTATAATC+GGG | - | tig0021468:102540-102559 | Msa1392160:CDS | 60.0% | |
| TGGATTGCTCGTGTGTCCGC+GGG | - | tig0021468:102695-102714 | Msa1392160:CDS | 60.0% | |
| ! | TCATTTCGTGGCACCGAGCG+TGG | - | tig0021468:101506-101525 | Msa1392160:CDS | 60.0% |
| TTCGCTCCCCCCATCGTAGA+TGG | + | tig0021468:101537-101556 | None:intergenic | 60.0% | |
| GAGCCATTGAAGCAGCGCGT+CGG | - | tig0021468:102528-102547 | Msa1392160:CDS | 60.0% | |
| AGCCATTGAAGCAGCGCGTC+GGG | - | tig0021468:102529-102548 | Msa1392160:CDS | 60.0% | |
| GCAGCGCGTCGGGCTATAAT+CGG | - | tig0021468:102539-102558 | Msa1392160:CDS | 60.0% | |
| CAGCGCGTCGGGCTATAATC+GGG | - | tig0021468:102540-102559 | Msa1392160:CDS | 60.0% | |
| TGGATTGCTCGTGTGTCCGC+GGG | - | tig0021468:102695-102714 | Msa1392160:CDS | 60.0% | |
| ATGGGGGGAGCGAATGCGCA+GGG | - | tig0021468:101543-101562 | Msa1392160:CDS | 65.0% | |
| GATGCCCGGGAACCACTCCT+AGG | - | tig0021468:101801-101820 | Msa1392160:CDS | 65.0% | |
| AGCCCGACGCGCTGCTTCAA+TGG | + | tig0021468:102534-102553 | None:intergenic | 65.0% | |
| ATGGGGGGAGCGAATGCGCA+GGG | - | tig0021468:101543-101562 | Msa1392160:CDS | 65.0% | |
| GATGCCCGGGAACCACTCCT+AGG | - | tig0021468:101801-101820 | Msa1392160:CDS | 65.0% | |
| AGCCCGACGCGCTGCTTCAA+TGG | + | tig0021468:102534-102553 | None:intergenic | 65.0% | |
| GATGGGGGGAGCGAATGCGC+AGG | - | tig0021468:101542-101561 | Msa1392160:CDS | 70.0% | |
| GATGGGGGGAGCGAATGCGC+AGG | - | tig0021468:101542-101561 | Msa1392160:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021468 | gene | 101477 | 102826 | 101477 | ID=Msa1392160;Name=Msa1392160 |
| tig0021468 | mRNA | 101477 | 102826 | 101477 | ID=Msa1392160-mRNA-1;Parent=Msa1392160;Name=Msa1392160-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|-1|0|1|-1|1|1|0|449 |
| tig0021468 | exon | 101477 | 102826 | 101477 | ID=Msa1392160-mRNA-1:exon:12968;Parent=Msa1392160-mRNA-1 |
| tig0021468 | CDS | 101477 | 102826 | 101477 | ID=Msa1392160-mRNA-1:cds;Parent=Msa1392160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
