Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983980 | RZB50463.1 | 79.580 | 333 | 68 | 0 | 1 | 333 | 639 | 971 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983980 | A0A445FNJ6 | 79.580 | 333 | 68 | 0 | 1 | 333 | 639 | 971 | 0.0 | 558 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0657970 | Msa0983980 | 0.802236 | 6.172571e-49 | -8.615850e-47 |
| Msa0661870 | Msa0983980 | 0.806265 | 8.946872e-50 | -8.615850e-47 |
| Msa0766630 | Msa0983980 | 0.806086 | 9.757910e-50 | -8.615850e-47 |
| Msa0437990 | Msa0983980 | 0.818397 | 2.002530e-52 | -8.615850e-47 |
| Msa0983980 | Msa1079180 | 0.806383 | 8.447599e-50 | -8.615850e-47 |
| Msa0983980 | Msa1082500 | 0.808584 | 2.882863e-50 | -8.615850e-47 |
| Msa0983980 | Msa1160670 | 0.812169 | 4.853855e-51 | -8.615850e-47 |
| Msa0983980 | Msa1179120 | 0.811701 | 6.138254e-51 | -8.615850e-47 |
| Msa0885280 | Msa0983980 | 0.835305 | 1.812861e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983980 | MtrunA17_Chr7g0272231 | 82.759 | 145 | 25 | 0 | 114 | 258 | 1 | 145 | 1.51e-76 | 235 |
| Msa0983980 | MtrunA17_Chr7g0258131 | 85.484 | 124 | 18 | 0 | 60 | 183 | 1 | 124 | 8.84e-69 | 215 |
| Msa0983980 | MtrunA17_Chr7g0261261 | 77.419 | 124 | 26 | 1 | 1 | 124 | 36 | 157 | 5.68e-57 | 185 |
| Msa0983980 | MtrunA17_Chr7g0223561 | 68.966 | 58 | 18 | 0 | 272 | 329 | 239 | 296 | 2.38e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 110 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGGAAGGATAAAGATTT+TGG | 0.198403 | 6_4:-27525783 | None:intergenic |
| GGGTCAAATTGGACGAGTTT+TGG | 0.265565 | 6_4:+27526324 | Msa0983980:intron |
| GCACTTAGTTTCCATTGATT+TGG | 0.282318 | 6_4:+27523439 | Msa0983980:CDS |
| AGCTTCAGAGCTTCATTATC+TGG | 0.284556 | 6_4:+27524722 | Msa0983980:CDS |
| TAGAAAAGTTGGTAGAAAAT+AGG | 0.288105 | 6_4:+27524254 | Msa0983980:CDS |
| GTTACACAGTTTAGATATCT+TGG | 0.293666 | 6_4:+27523917 | Msa0983980:CDS |
| GAAAATAGGCTTAGATGGTT+TGG | 0.322680 | 6_4:+27524268 | Msa0983980:CDS |
| TCCTCACCCCTTTCTTCTCC+AGG | 0.323366 | 6_4:-27523505 | None:intergenic |
| TAGAAGCAAGACGGAGTATA+TGG | 0.338097 | 6_4:+27523823 | Msa0983980:CDS |
| TGGTAGAAAATAGGCTTAGA+TGG | 0.349489 | 6_4:+27524263 | Msa0983980:CDS |
| CGCAGCGCTGCGCTTGTACA+AGG | 0.362562 | 6_4:+27526396 | Msa0983980:CDS |
| GACTCGTGATGGAGCGATAT+CGG | 0.362838 | 6_4:+27523399 | Msa0983980:CDS |
| CGCTTACTTTACTCTCGTGT+TGG | 0.364189 | 6_4:-27524132 | None:intergenic |
| TGCTAGTGTCTTAAAGTTGT+TGG | 0.366118 | 6_4:-27524666 | None:intergenic |
| AGTCTTGCTTGGTGAGTTGA+TGG | 0.400455 | 6_4:+27523736 | Msa0983980:CDS |
| TTTGGAAGATTTGGAGGAGA+GGG | 0.402507 | 6_4:-27525765 | None:intergenic |
| GGTGCATTGCAGGGTCAAAT+TGG | 0.406481 | 6_4:+27526313 | Msa0983980:intron |
| AACTTTCCTTTCAGCTTAAG+TGG | 0.408514 | 6_4:-27524049 | None:intergenic |
| AGATCAAATGGAGGAGAGTC+AGG | 0.409734 | 6_4:+27524333 | Msa0983980:CDS |
| AGACTAGACATGATAGGATT+AGG | 0.412117 | 6_4:+27524191 | Msa0983980:CDS |
| CTTGTAATCTCGTTCTAAAG+TGG | 0.418834 | 6_4:-27524777 | None:intergenic |
| TACATCTCGGTGCTAACTCT+TGG | 0.421345 | 6_4:-27523694 | None:intergenic |
| TCTTCTTACAACGGCATCTA+CGG | 0.424045 | 6_4:-27524308 | None:intergenic |
| TCCGTACCATACATCATTGC+CGG | 0.428350 | 6_4:-27524091 | None:intergenic |
| CCAAAATCTTTATCCTTCCA+TGG | 0.430204 | 6_4:+27525783 | Msa0983980:CDS |
| TTCAAGCTGGGTGGTTGAAA+TGG | 0.430779 | 6_4:+27523990 | Msa0983980:CDS |
| TGGAGGAGAGGGAGAGAGAA+GGG | 0.431675 | 6_4:-27525754 | None:intergenic |
| GATATCTAAACTGTGTAACT+TGG | 0.432938 | 6_4:-27523913 | None:intergenic |
| TTACACAGTTTAGATATCTT+GGG | 0.440027 | 6_4:+27523918 | Msa0983980:CDS |
| CAAAATTAATTCACTTGCCA+TGG | 0.441015 | 6_4:-27525800 | None:intergenic |
| AGCTATCCAGGATATGTATG+AGG | 0.465523 | 6_4:+27523541 | Msa0983980:CDS |
| AGTTGATGGAGGAGTTAAAC+GGG | 0.466461 | 6_4:+27523750 | Msa0983980:CDS |
| ATATCTAAACTGTGTAACTT+GGG | 0.467311 | 6_4:-27523912 | None:intergenic |
| TGCCTATATTAGAGCTATCC+AGG | 0.468414 | 6_4:+27523529 | Msa0983980:CDS |
| CCTCACCCCTTTCTTCTCCA+GGG | 0.475692 | 6_4:-27523504 | None:intergenic |
| AGAGGGAGAGAGAAGGGCGA+TGG | 0.479141 | 6_4:-27525748 | None:intergenic |
| TGTAAGAAGAGTAGATCAAA+TGG | 0.483895 | 6_4:+27524321 | Msa0983980:CDS |
| TTGGAGGAGAGGGAGAGAGA+AGG | 0.484982 | 6_4:-27525755 | None:intergenic |
| TAGCGCTAGCTCCCTGTGTG+TGG | 0.485751 | 6_4:-27526430 | None:intergenic |
| GCAGATGATGTAGTCTTGCT+TGG | 0.487670 | 6_4:+27523725 | Msa0983980:CDS |
| ATACGCATTCTCCAAATCAA+TGG | 0.494061 | 6_4:-27523450 | None:intergenic |
| GATGTATGGTACGGAGTGTT+GGG | 0.496159 | 6_4:+27524099 | Msa0983980:CDS |
| GTCAGACCGGCAATGATGTA+TGG | 0.497299 | 6_4:+27524085 | Msa0983980:CDS |
| GGAAAGCCCTGGAGAAGAAA+GGG | 0.505265 | 6_4:+27523498 | Msa0983980:CDS |
| AGCGCTAGCTCCCTGTGTGT+GGG | 0.507521 | 6_4:-27526429 | None:intergenic |
| TGCGCTTGTACAAGGGCGCT+AGG | 0.512889 | 6_4:+27526404 | Msa0983980:CDS |
| TGATGTATGGTACGGAGTGT+TGG | 0.516528 | 6_4:+27524098 | Msa0983980:CDS |
| AAGAAGTGGGTCTACCTTGG+AGG | 0.516974 | 6_4:+27523865 | Msa0983980:CDS |
| GAGGAGAGTCAGGTTAAAAG+AGG | 0.517218 | 6_4:+27524343 | Msa0983980:CDS |
| CGATGGAGAGAGTAGAGAGA+AGG | 0.517406 | 6_4:-27525731 | None:intergenic |
| ATTAATTCACTTGCCATGGA+AGG | 0.519844 | 6_4:-27525796 | None:intergenic |
| GAGTTGATGGAGGAGTTAAA+CGG | 0.522260 | 6_4:+27523749 | Msa0983980:CDS |
| ACGGGAGGCTAGAGACTTGG+AGG | 0.526938 | 6_4:+27523768 | Msa0983980:CDS |
| TGGAAAGCCCTGGAGAAGAA+AGG | 0.528537 | 6_4:+27523497 | Msa0983980:CDS |
| AGCACCTATAGTAGAAAAGT+TGG | 0.529249 | 6_4:+27524243 | Msa0983980:CDS |
| TCTACCTTGGAGGTGAAAGT+TGG | 0.531285 | 6_4:+27523875 | Msa0983980:CDS |
| TAAACGGGAGGCTAGAGACT+TGG | 0.532021 | 6_4:+27523765 | Msa0983980:CDS |
| GCTTTCCATAAAATCTCTCT+AGG | 0.534123 | 6_4:-27523482 | None:intergenic |
| ATCCTGGATAGCTCTAATAT+AGG | 0.536322 | 6_4:-27523531 | None:intergenic |
| ACTCCGTCTTGCTTCTACTC+AGG | 0.536326 | 6_4:-27523817 | None:intergenic |
| CGGAGATGAGGATGTTGTGT+TGG | 0.540222 | 6_4:+27524158 | Msa0983980:CDS |
| GACACTATTAGAGAGAGAGT+GGG | 0.540350 | 6_4:+27524217 | Msa0983980:CDS |
| AAGAAGAAGTGGGTCTACCT+TGG | 0.543404 | 6_4:+27523862 | Msa0983980:CDS |
| AACTTCAGCAAAAGAAGAAG+TGG | 0.544677 | 6_4:+27523851 | Msa0983980:CDS |
| CTTCTTACAACGGCATCTAC+GGG | 0.551114 | 6_4:-27524307 | None:intergenic |
| GTACATCATCGTATTCAAGC+TGG | 0.551451 | 6_4:+27523977 | Msa0983980:CDS |
| GTGGAAAGTGCTAGTGAATG+TGG | 0.554192 | 6_4:-27524758 | None:intergenic |
| TATTGTTATGAGAAAATCTA+CGG | 0.557108 | 6_4:-27523600 | None:intergenic |
| TTGAAATGGAGAAGAGCCTC+AGG | 0.558437 | 6_4:+27524004 | Msa0983980:CDS |
| GGCGCTAGGTGCCCACACAC+AGG | 0.558507 | 6_4:+27526418 | Msa0983980:CDS |
| ATCTCCAACTTTCACCTCCA+AGG | 0.560017 | 6_4:-27523879 | None:intergenic |
| AAGGACTTAGGGTTGACCCT+TGG | 0.564439 | 6_4:-27523631 | None:intergenic |
| TACATCATCGTATTCAAGCT+GGG | 0.565675 | 6_4:+27523978 | Msa0983980:CDS |
| GCGGAAGCCACACACTTCAA+AGG | 0.566020 | 6_4:-27523795 | None:intergenic |
| GCTATCCAGGATATGTATGA+GGG | 0.566802 | 6_4:+27523542 | Msa0983980:CDS |
| GCAGCGCTGCGCTTGTACAA+GGG | 0.571051 | 6_4:+27526397 | Msa0983980:CDS |
| CTACTTACTTCGACTCGTGA+TGG | 0.571196 | 6_4:+27523388 | Msa0983980:CDS |
| AAGAAGAGTAGATCAAATGG+AGG | 0.572060 | 6_4:+27524324 | Msa0983980:CDS |
| TGACACTATTAGAGAGAGAG+TGG | 0.573006 | 6_4:+27524216 | Msa0983980:CDS |
| GCGCTAGGTGCCCACACACA+GGG | 0.576152 | 6_4:+27526419 | Msa0983980:CDS |
| AAGTAAGCGTAGCGGAGATG+AGG | 0.580011 | 6_4:+27524146 | Msa0983980:CDS |
| AGGATGTTGTGTTGGATGAG+TGG | 0.583163 | 6_4:+27524166 | Msa0983980:CDS |
| AGGCAAGCCTTTGAAGTGTG+TGG | 0.585682 | 6_4:+27523788 | Msa0983980:CDS |
| TTGATCTACTCTTCTTACAA+CGG | 0.585966 | 6_4:-27524317 | None:intergenic |
| GTGGTAAGACTAGACATGAT+AGG | 0.588491 | 6_4:+27524185 | Msa0983980:CDS |
| AAAGTACCACTTAAGCTGAA+AGG | 0.593672 | 6_4:+27524043 | Msa0983980:CDS |
| TTATCGGACAGCAGTCAGAC+CGG | 0.595833 | 6_4:+27524072 | Msa0983980:CDS |
| CCGTCTTGCTTCTACTCAGG+CGG | 0.600460 | 6_4:-27523814 | None:intergenic |
| ACCGGCAATGATGTATGGTA+CGG | 0.602154 | 6_4:+27524090 | Msa0983980:CDS |
| ACTAGTGTGAGGACGCAGGA+TGG | 0.604754 | 6_4:+27523572 | Msa0983980:CDS |
| CTTGCTTGGTGAGTTGATGG+AGG | 0.606967 | 6_4:+27523739 | Msa0983980:CDS |
| CCCTGGAGAAGAAAGGGGTG+AGG | 0.616180 | 6_4:+27523504 | Msa0983980:CDS |
| TATCTAAACTGTGTAACTTG+GGG | 0.627944 | 6_4:-27523911 | None:intergenic |
| ACTTCAGCAAAAGAAGAAGT+GGG | 0.629483 | 6_4:+27523852 | Msa0983980:CDS |
| TTCGACTAGTGTGAGGACGC+AGG | 0.636694 | 6_4:+27523568 | Msa0983980:CDS |
| ACACTATTAGAGAGAGAGTG+GGG | 0.649760 | 6_4:+27524218 | Msa0983980:CDS |
| CCGCCTGAGTAGAAGCAAGA+CGG | 0.650999 | 6_4:+27523814 | Msa0983980:CDS |
| TAACAATAGGACTACACCAA+GGG | 0.651563 | 6_4:+27523615 | Msa0983980:CDS |
| GGGTCTATAGTACAAAATGA+CGG | 0.656445 | 6_4:+27523938 | Msa0983980:CDS |
| CGTGATGGAGCGATATCGGA+CGG | 0.663669 | 6_4:+27523403 | Msa0983980:CDS |
| CTATCCAGGATATGTATGAG+GGG | 0.670350 | 6_4:+27523543 | Msa0983980:CDS |
| CTTATCGCACAAAACACCTG+AGG | 0.671204 | 6_4:-27524020 | None:intergenic |
| GAAAGCCCTGGAGAAGAAAG+GGG | 0.681595 | 6_4:+27523499 | Msa0983980:CDS |
| CACTATTAGAGAGAGAGTGG+GGG | 0.683513 | 6_4:+27524219 | Msa0983980:CDS |
| TATCCAGGATATGTATGAGG+GGG | 0.686149 | 6_4:+27523544 | Msa0983980:CDS |
| ATAACAATAGGACTACACCA+AGG | 0.690937 | 6_4:+27523614 | Msa0983980:CDS |
| TGATGGAGGAGTTAAACGGG+AGG | 0.691178 | 6_4:+27523753 | Msa0983980:CDS |
| GTATGGTACGGAGTGTTGGG+CGG | 0.717320 | 6_4:+27524102 | Msa0983980:CDS |
| CGAGAGTAAAGTAAGCGTAG+CGG | 0.726842 | 6_4:+27524138 | Msa0983980:CDS |
| ATCATCGTATTCAAGCTGGG+TGG | 0.749283 | 6_4:+27523981 | Msa0983980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTAAAGTAAAAAGATA+AGG | - | chr6_4:27523653-27523672 | None:intergenic | 15.0% |
| !!! | TTATCTTTTTACTTTAGTTT+TGG | + | chr6_4:27523652-27523671 | Msa0983980:CDS | 15.0% |
| !!! | TTTTTAAATTAAAATGTGTG+AGG | + | chr6_4:27525077-27525096 | Msa0983980:intron | 15.0% |
| !!! | CGTTTTATATATTTTATCTA+AGG | + | chr6_4:27525137-27525156 | Msa0983980:intron | 15.0% |
| !!! | TTTATATATTTTATCTAAGG+TGG | + | chr6_4:27525140-27525159 | Msa0983980:intron | 15.0% |
| !! | ATATAACAAGAATTACTTTA+GGG | - | chr6_4:27526204-27526223 | None:intergenic | 15.0% |
| !! | TATATAACAAGAATTACTTT+AGG | - | chr6_4:27526205-27526224 | None:intergenic | 15.0% |
| !! | TATTGTTATGAGAAAATCTA+CGG | - | chr6_4:27523603-27523622 | None:intergenic | 20.0% |
| !!! | GAATTAATGTATGTTTTTGT+TGG | + | chr6_4:27524589-27524608 | Msa0983980:intron | 20.0% |
| !! | AAACATGTATTATGTTAGTT+TGG | + | chr6_4:27526158-27526177 | Msa0983980:intron | 20.0% |
| !!! | TTATGTTAGTTTGGTTTTTA+TGG | + | chr6_4:27526167-27526186 | Msa0983980:intron | 20.0% |
| !! | TATAACAAGAATTACTTTAG+GGG | - | chr6_4:27526203-27526222 | None:intergenic | 20.0% |
| !! | GTAGATTTTCTCATAACAAT+AGG | + | chr6_4:27523602-27523621 | Msa0983980:CDS | 25.0% |
| ! | AGTAAAAAGATAAGGACTTA+GGG | - | chr6_4:27523645-27523664 | None:intergenic | 25.0% |
| ! | AAGTAAAAAGATAAGGACTT+AGG | - | chr6_4:27523646-27523665 | None:intergenic | 25.0% |
| ! | ATATCTAAACTGTGTAACTT+GGG | - | chr6_4:27523915-27523934 | None:intergenic | 25.0% |
| ! | TTACACAGTTTAGATATCTT+GGG | + | chr6_4:27523918-27523937 | Msa0983980:CDS | 25.0% |
| !!! | TAGAAAAGTTGGTAGAAAAT+AGG | + | chr6_4:27524254-27524273 | Msa0983980:CDS | 25.0% |
| !! | TTTTCTAATGGTTTCTCTAA+TGG | - | chr6_4:27524389-27524408 | None:intergenic | 25.0% |
| ! | GTTCTATCAAAAACCATATT+TGG | - | chr6_4:27524436-27524455 | None:intergenic | 25.0% |
| !! | TATATGTGGGTTAAGTAAAT+AGG | + | chr6_4:27525111-27525130 | Msa0983980:intron | 25.0% |
| !! | ACGATTTTCATGAAAGTTTA+AGG | - | chr6_4:27525239-27525258 | None:intergenic | 25.0% |
| ! | TTAAACTTTCATGAAAATCG+TGG | + | chr6_4:27525238-27525257 | Msa0983980:intron | 25.0% |
| ! | ATATATATGCATTAAGACGA+CGG | + | chr6_4:27525262-27525281 | Msa0983980:intron | 25.0% |
| !! | CTCAATATCTACAACATTTT+TGG | - | chr6_4:27525434-27525453 | None:intergenic | 25.0% |
| ! | TTGTAGATATTGAGTTAACA+TGG | + | chr6_4:27525440-27525459 | Msa0983980:intron | 25.0% |
| ! | TATGTTATGTCAGCTTAATA+CGG | + | chr6_4:27525558-27525577 | Msa0983980:intron | 25.0% |
| !!! | AAGGGATATTTATTTGGTTT+TGG | + | chr6_4:27525643-27525662 | Msa0983980:intron | 25.0% |
| !!! | GATAAAGATTTTGGAAGATT+TGG | - | chr6_4:27525777-27525796 | None:intergenic | 25.0% |
| ! | TAAAGTTTAAGAGATCAAGA+GGG | - | chr6_4:27525828-27525847 | None:intergenic | 25.0% |
| !! | AAAGAAAGATGATTTGAAGT+TGG | + | chr6_4:27525969-27525988 | Msa0983980:intron | 25.0% |
| !! | AAGAAAGATGATTTGAAGTT+GGG | + | chr6_4:27525970-27525989 | Msa0983980:intron | 25.0% |
| ! | ACTTATATAAACACATCTCA+TGG | - | chr6_4:27526269-27526288 | None:intergenic | 25.0% |
| !!! | TTTAGTTTTGGATGTACTGA+CGG | + | chr6_4:27523664-27523683 | Msa0983980:CDS | 30.0% |
| ! | TCTGCAAAAAGTATACATCT+CGG | - | chr6_4:27523710-27523729 | None:intergenic | 30.0% |
| TATCTAAACTGTGTAACTTG+GGG | - | chr6_4:27523914-27523933 | None:intergenic | 30.0% | |
| GATATCTAAACTGTGTAACT+TGG | - | chr6_4:27523916-27523935 | None:intergenic | 30.0% | |
| GTTACACAGTTTAGATATCT+TGG | + | chr6_4:27523917-27523936 | Msa0983980:CDS | 30.0% | |
| !! | AGCTGAAAGGAAAGTTTTAT+CGG | + | chr6_4:27524056-27524075 | Msa0983980:CDS | 30.0% |
| ! | TCTACCAACTTTTCTACTAT+AGG | - | chr6_4:27524250-27524269 | None:intergenic | 30.0% |
| TTGATCTACTCTTCTTACAA+CGG | - | chr6_4:27524320-27524339 | None:intergenic | 30.0% | |
| TGTAAGAAGAGTAGATCAAA+TGG | + | chr6_4:27524321-27524340 | Msa0983980:CDS | 30.0% | |
| ! | GTTTCTCTAATGGTTTTCTT+AGG | - | chr6_4:27524379-27524398 | None:intergenic | 30.0% |
| AACCATTAGAAAAGATTGAG+AGG | + | chr6_4:27524396-27524415 | Msa0983980:intron | 30.0% | |
| ! | TGGTTTTTGATAGAACACTA+TGG | + | chr6_4:27524440-27524459 | Msa0983980:intron | 30.0% |
| ! | TTGTTGTTGTATAGTGTCTT+AGG | + | chr6_4:27524517-27524536 | Msa0983980:intron | 30.0% |
| !! | TGCTATGTTTAAGTTGAGTT+TGG | - | chr6_4:27524557-27524576 | None:intergenic | 30.0% |
| !!! | TGACCAATTTTTTCAACGTA+AGG | + | chr6_4:27524643-27524662 | Msa0983980:CDS | 30.0% |
| ! | GTATAAGCAAAGTATCCTAT+TGG | + | chr6_4:27525005-27525024 | Msa0983980:intron | 30.0% |
| TGGCTTATAAGTTTAAGCTA+TGG | - | chr6_4:27525182-27525201 | None:intergenic | 30.0% | |
| TAGCTTAAACTTATAAGCCA+CGG | + | chr6_4:27525182-27525201 | Msa0983980:intron | 30.0% | |
| GTAAGCTATCGTTGTTAATT+TGG | + | chr6_4:27525204-27525223 | Msa0983980:intron | 30.0% | |
| ! | ATATAAGGGTGTGGTATATA+CGG | - | chr6_4:27525344-27525363 | None:intergenic | 30.0% |
| AAACCGTTGTCTAAACATTT+AGG | - | chr6_4:27525373-27525392 | None:intergenic | 30.0% | |
| !!! | TCTACAACATTTTTGGCTTT+AGG | - | chr6_4:27525427-27525446 | None:intergenic | 30.0% |
| TTTCCACAACATTAATCATC+TGG | - | chr6_4:27525516-27525535 | None:intergenic | 30.0% | |
| ! | TAATTGTATTTTCGCACGAA+AGG | + | chr6_4:27525624-27525643 | Msa0983980:intron | 30.0% |
| ! | AATTGTATTTTCGCACGAAA+GGG | + | chr6_4:27525625-27525644 | Msa0983980:intron | 30.0% |
| !! | AAATGGGAAATGAGGTATTT+TGG | - | chr6_4:27525671-27525690 | None:intergenic | 30.0% |
| !! | AAAGATTTTGGAAGATTTGG+AGG | - | chr6_4:27525774-27525793 | None:intergenic | 30.0% |
| CAAAATTAATTCACTTGCCA+TGG | - | chr6_4:27525803-27525822 | None:intergenic | 30.0% | |
| AAAGTTTAAGAGATCAAGAG+GGG | - | chr6_4:27525827-27525846 | None:intergenic | 30.0% | |
| CTAAAGTTTAAGAGATCAAG+AGG | - | chr6_4:27525829-27525848 | None:intergenic | 30.0% | |
| ! | TCTCTTAAACTTTAGAAGCT+TGG | + | chr6_4:27525834-27525853 | Msa0983980:intron | 30.0% |
| !! | TTGAATCTCTTTTTGAGAGA+TGG | - | chr6_4:27525881-27525900 | None:intergenic | 30.0% |
| ATCTCTCAAAAAGAGATTCA+AGG | + | chr6_4:27525880-27525899 | Msa0983980:intron | 30.0% | |
| !! | TTTCTTTTGATTCTTGACCA+TGG | - | chr6_4:27525956-27525975 | None:intergenic | 30.0% |
| AAAGGTAGGATATCTATCTA+TGG | - | chr6_4:27526116-27526135 | None:intergenic | 30.0% | |
| ATAGATAGATATCCTACCTT+TGG | + | chr6_4:27526115-27526134 | Msa0983980:intron | 30.0% | |
| ! | GCACTTAGTTTCCATTGATT+TGG | + | chr6_4:27523439-27523458 | Msa0983980:CDS | 35.0% |
| ATACGCATTCTCCAAATCAA+TGG | - | chr6_4:27523453-27523472 | None:intergenic | 35.0% | |
| ! | GAGTACCTAGAGAGATTTTA+TGG | + | chr6_4:27523477-27523496 | Msa0983980:CDS | 35.0% |
| GCTTTCCATAAAATCTCTCT+AGG | - | chr6_4:27523485-27523504 | None:intergenic | 35.0% | |
| !! | ATCCTGGATAGCTCTAATAT+AGG | - | chr6_4:27523534-27523553 | None:intergenic | 35.0% |
| ATAACAATAGGACTACACCA+AGG | + | chr6_4:27523614-27523633 | Msa0983980:CDS | 35.0% | |
| TAACAATAGGACTACACCAA+GGG | + | chr6_4:27523615-27523634 | Msa0983980:CDS | 35.0% | |
| AACTTCAGCAAAAGAAGAAG+TGG | + | chr6_4:27523851-27523870 | Msa0983980:CDS | 35.0% | |
| ACTTCAGCAAAAGAAGAAGT+GGG | + | chr6_4:27523852-27523871 | Msa0983980:CDS | 35.0% | |
| GGGTCTATAGTACAAAATGA+CGG | + | chr6_4:27523938-27523957 | Msa0983980:CDS | 35.0% | |
| TACATCATCGTATTCAAGCT+GGG | + | chr6_4:27523978-27523997 | Msa0983980:CDS | 35.0% | |
| ! | AAAGTACCACTTAAGCTGAA+AGG | + | chr6_4:27524043-27524062 | Msa0983980:CDS | 35.0% |
| AACTTTCCTTTCAGCTTAAG+TGG | - | chr6_4:27524052-27524071 | None:intergenic | 35.0% | |
| AGACTAGACATGATAGGATT+AGG | + | chr6_4:27524191-27524210 | Msa0983980:CDS | 35.0% | |
| AGCACCTATAGTAGAAAAGT+TGG | + | chr6_4:27524243-27524262 | Msa0983980:CDS | 35.0% | |
| TGGTAGAAAATAGGCTTAGA+TGG | + | chr6_4:27524263-27524282 | Msa0983980:CDS | 35.0% | |
| GAAAATAGGCTTAGATGGTT+TGG | + | chr6_4:27524268-27524287 | Msa0983980:CDS | 35.0% | |
| AAGAAGAGTAGATCAAATGG+AGG | + | chr6_4:27524324-27524343 | Msa0983980:CDS | 35.0% | |
| ! | GACCTCTCAATCTTTTCTAA+TGG | - | chr6_4:27524401-27524420 | None:intergenic | 35.0% |
| ! | CAATGAGTTGGATCCAAATA+TGG | + | chr6_4:27524420-27524439 | Msa0983980:intron | 35.0% |
| TTAATTGTGCATTGCAGATG+TGG | + | chr6_4:27524613-27524632 | Msa0983980:intron | 35.0% | |
| TAATTGTGCATTGCAGATGT+GGG | + | chr6_4:27524614-27524633 | Msa0983980:intron | 35.0% | |
| ! | TGGCCTTACGTTGAAAAAAT+TGG | - | chr6_4:27524649-27524668 | None:intergenic | 35.0% |
| TGCTAGTGTCTTAAAGTTGT+TGG | - | chr6_4:27524669-27524688 | None:intergenic | 35.0% | |
| !! | CTTGTAATCTCGTTCTAAAG+TGG | - | chr6_4:27524780-27524799 | None:intergenic | 35.0% |
| GCAACTTAAACACAACCAAT+AGG | - | chr6_4:27525023-27525042 | None:intergenic | 35.0% | |
| !! | ATTGGTTGTGTTTAAGTTGC+AGG | + | chr6_4:27525023-27525042 | Msa0983980:intron | 35.0% |
| !! | TTGGTTGTGTTTAAGTTGCA+GGG | + | chr6_4:27525024-27525043 | Msa0983980:intron | 35.0% |
| AATTAAAATGTGTGAGGCCA+CGG | + | chr6_4:27525083-27525102 | Msa0983980:intron | 35.0% | |
| AACCCACATATATAAAACCG+TGG | - | chr6_4:27525103-27525122 | None:intergenic | 35.0% | |
| ! | TTCATGAAAGTTTAAGGCTG+CGG | - | chr6_4:27525233-27525252 | None:intergenic | 35.0% |
| AAAACCGTGGCTTATACTTT+AGG | + | chr6_4:27525312-27525331 | Msa0983980:intron | 35.0% | |
| TTGTCTAAACATTTAGGCCA+CGG | - | chr6_4:27525367-27525386 | None:intergenic | 35.0% | |
| TGGCCTAAATGTTTAGACAA+CGG | + | chr6_4:27525367-27525386 | Msa0983980:intron | 35.0% | |
| ! | GATTTCAATCCACGTTTTTG+TGG | + | chr6_4:27525396-27525415 | Msa0983980:intron | 35.0% |
| TGTTGTGGAAAGTAAGTTAG+TGG | + | chr6_4:27525525-27525544 | Msa0983980:intron | 35.0% | |
| GCACGAAAGGGATATTTATT+TGG | + | chr6_4:27525637-27525656 | Msa0983980:intron | 35.0% | |
| GAGAAAGAAAATGGGAAATG+AGG | - | chr6_4:27525679-27525698 | None:intergenic | 35.0% | |
| CCTAGAGAGAGAAAGAAAAT+GGG | - | chr6_4:27525687-27525706 | None:intergenic | 35.0% | |
| ! | CCATTTTCTTTCTCTCTCTA+GGG | + | chr6_4:27525685-27525704 | Msa0983980:intron | 35.0% |
| ! | CCATGGAAGGATAAAGATTT+TGG | - | chr6_4:27525786-27525805 | None:intergenic | 35.0% |
| CCAAAATCTTTATCCTTCCA+TGG | + | chr6_4:27525783-27525802 | Msa0983980:CDS | 35.0% | |
| ATTAATTCACTTGCCATGGA+AGG | - | chr6_4:27525799-27525818 | None:intergenic | 35.0% | |
| TCAAAAAGAGATTCAAGGCT+AGG | + | chr6_4:27525885-27525904 | Msa0983980:intron | 35.0% | |
| CAAAAAGAGATTCAAGGCTA+GGG | + | chr6_4:27525886-27525905 | Msa0983980:intron | 35.0% | |
| GATTGTGATACTTGAAGCTT+TGG | + | chr6_4:27526011-27526030 | Msa0983980:intron | 35.0% | |
| CTAGGTTTCATTATGTGAAG+TGG | + | chr6_4:27526041-27526060 | Msa0983980:intron | 35.0% | |
| GGATTAAGTGCAAACATTTG+AGG | + | chr6_4:27526084-27526103 | Msa0983980:intron | 35.0% | |
| AGATTGAACAATCCAAAGGT+AGG | - | chr6_4:27526130-27526149 | None:intergenic | 35.0% | |
| CACAAGATTGAACAATCCAA+AGG | - | chr6_4:27526134-27526153 | None:intergenic | 35.0% | |
| !! | GAATTACTTTAGGGGTACTA+AGG | - | chr6_4:27526195-27526214 | None:intergenic | 35.0% |
| TACATGTTGCTAGATGTGTT+TGG | + | chr6_4:27526292-27526311 | Msa0983980:intron | 35.0% | |
| !!! | TTTTGCGTTTTCGGTGTTTT+CGG | - | chr6_4:27526374-27526393 | None:intergenic | 35.0% |
| ! | AGAGATTTTATGGAAAGCCC+TGG | + | chr6_4:27523487-27523506 | Msa0983980:CDS | 40.0% |
| TGCCTATATTAGAGCTATCC+AGG | + | chr6_4:27523529-27523548 | Msa0983980:CDS | 40.0% | |
| AGCTATCCAGGATATGTATG+AGG | + | chr6_4:27523541-27523560 | Msa0983980:CDS | 40.0% | |
| GCTATCCAGGATATGTATGA+GGG | + | chr6_4:27523542-27523561 | Msa0983980:CDS | 40.0% | |
| CTATCCAGGATATGTATGAG+GGG | + | chr6_4:27523543-27523562 | Msa0983980:CDS | 40.0% | |
| TATCCAGGATATGTATGAGG+GGG | + | chr6_4:27523544-27523563 | Msa0983980:CDS | 40.0% | |
| !! | GAGTTGATGGAGGAGTTAAA+CGG | + | chr6_4:27523749-27523768 | Msa0983980:CDS | 40.0% |
| !! | AGTTGATGGAGGAGTTAAAC+GGG | + | chr6_4:27523750-27523769 | Msa0983980:CDS | 40.0% |
| TAGAAGCAAGACGGAGTATA+TGG | + | chr6_4:27523823-27523842 | Msa0983980:CDS | 40.0% | |
| GTACATCATCGTATTCAAGC+TGG | + | chr6_4:27523977-27523996 | Msa0983980:CDS | 40.0% | |
| GTGGTAAGACTAGACATGAT+AGG | + | chr6_4:27524185-27524204 | Msa0983980:CDS | 40.0% | |
| TGACACTATTAGAGAGAGAG+TGG | + | chr6_4:27524216-27524235 | Msa0983980:CDS | 40.0% | |
| GACACTATTAGAGAGAGAGT+GGG | + | chr6_4:27524217-27524236 | Msa0983980:CDS | 40.0% | |
| ACACTATTAGAGAGAGAGTG+GGG | + | chr6_4:27524218-27524237 | Msa0983980:CDS | 40.0% | |
| TCTTCTTACAACGGCATCTA+CGG | - | chr6_4:27524311-27524330 | None:intergenic | 40.0% | |
| AGTCAGGTTAAAAGAGGTAG+AGG | + | chr6_4:27524349-27524368 | Msa0983980:intron | 40.0% | |
| AGATTGAGAGGTCAATGAGT+TGG | + | chr6_4:27524408-27524427 | Msa0983980:intron | 40.0% | |
| AGCTTCAGAGCTTCATTATC+TGG | + | chr6_4:27524722-27524741 | Msa0983980:CDS | 40.0% | |
| !! | AGGCCACGGTTTTATATATG+TGG | + | chr6_4:27525097-27525116 | Msa0983980:intron | 40.0% |
| !! | GGCCACGGTTTTATATATGT+GGG | + | chr6_4:27525098-27525117 | Msa0983980:intron | 40.0% |
| TTAACAACGATAGCTTACCG+TGG | - | chr6_4:27525202-27525221 | None:intergenic | 40.0% | |
| GTTGCCTAAAGTATAAGCCA+CGG | - | chr6_4:27525319-27525338 | None:intergenic | 40.0% | |
| GTGGCTTATACTTTAGGCAA+CGG | + | chr6_4:27525318-27525337 | Msa0983980:intron | 40.0% | |
| CATTTAGGCCACGGATATAA+GGG | - | chr6_4:27525358-27525377 | None:intergenic | 40.0% | |
| ACATTTAGGCCACGGATATA+AGG | - | chr6_4:27525359-27525378 | None:intergenic | 40.0% | |
| AATATCCTGATACTGACAGG+CGG | - | chr6_4:27525479-27525498 | None:intergenic | 40.0% | |
| GGTAATATCCTGATACTGAC+AGG | - | chr6_4:27525482-27525501 | None:intergenic | 40.0% | |
| GTGCCAGATGATTAATGTTG+TGG | + | chr6_4:27525510-27525529 | Msa0983980:intron | 40.0% | |
| ! | TACGGATAGAGTATCAGTGT+CGG | + | chr6_4:27525576-27525595 | Msa0983980:intron | 40.0% |
| ! | CCCATTTTCTTTCTCTCTCT+AGG | + | chr6_4:27525684-27525703 | Msa0983980:intron | 40.0% |
| CCCTAGAGAGAGAAAGAAAA+TGG | - | chr6_4:27525688-27525707 | None:intergenic | 40.0% | |
| TTTGGAAGATTTGGAGGAGA+GGG | - | chr6_4:27525768-27525787 | None:intergenic | 40.0% | |
| !! | TTTTGGAAGATTTGGAGGAG+AGG | - | chr6_4:27525769-27525788 | None:intergenic | 40.0% |
| TGCAAGCTATGATTTCTCCA+TGG | + | chr6_4:27525936-27525955 | Msa0983980:intron | 40.0% | |
| ! | GGTCAAATTGGACGAGTTTT+GGG | + | chr6_4:27526325-27526344 | Msa0983980:CDS | 40.0% |
| ! | CTACTTACTTCGACTCGTGA+TGG | + | chr6_4:27523388-27523407 | Msa0983980:CDS | 45.0% |
| !! | TACATCTCGGTGCTAACTCT+TGG | - | chr6_4:27523697-27523716 | None:intergenic | 45.0% |
| ! | GCAGATGATGTAGTCTTGCT+TGG | + | chr6_4:27523725-27523744 | Msa0983980:CDS | 45.0% |
| ! | AGTCTTGCTTGGTGAGTTGA+TGG | + | chr6_4:27523736-27523755 | Msa0983980:CDS | 45.0% |
| AAGAAGAAGTGGGTCTACCT+TGG | + | chr6_4:27523862-27523881 | Msa0983980:CDS | 45.0% | |
| TCTACCTTGGAGGTGAAAGT+TGG | + | chr6_4:27523875-27523894 | Msa0983980:CDS | 45.0% | |
| ATCTCCAACTTTCACCTCCA+AGG | - | chr6_4:27523882-27523901 | None:intergenic | 45.0% | |
| ATCATCGTATTCAAGCTGGG+TGG | + | chr6_4:27523981-27524000 | Msa0983980:CDS | 45.0% | |
| TTCAAGCTGGGTGGTTGAAA+TGG | + | chr6_4:27523990-27524009 | Msa0983980:CDS | 45.0% | |
| TTGAAATGGAGAAGAGCCTC+AGG | + | chr6_4:27524004-27524023 | Msa0983980:CDS | 45.0% | |
| CTTATCGCACAAAACACCTG+AGG | - | chr6_4:27524023-27524042 | None:intergenic | 45.0% | |
| ACCGGCAATGATGTATGGTA+CGG | + | chr6_4:27524090-27524109 | Msa0983980:CDS | 45.0% | |
| TCCGTACCATACATCATTGC+CGG | - | chr6_4:27524094-27524113 | None:intergenic | 45.0% | |
| TGATGTATGGTACGGAGTGT+TGG | + | chr6_4:27524098-27524117 | Msa0983980:CDS | 45.0% | |
| ! | GATGTATGGTACGGAGTGTT+GGG | + | chr6_4:27524099-27524118 | Msa0983980:CDS | 45.0% |
| CGCTTACTTTACTCTCGTGT+TGG | - | chr6_4:27524135-27524154 | None:intergenic | 45.0% | |
| CGAGAGTAAAGTAAGCGTAG+CGG | + | chr6_4:27524138-27524157 | Msa0983980:CDS | 45.0% | |
| AGGATGTTGTGTTGGATGAG+TGG | + | chr6_4:27524166-27524185 | Msa0983980:CDS | 45.0% | |
| CACTATTAGAGAGAGAGTGG+GGG | + | chr6_4:27524219-27524238 | Msa0983980:CDS | 45.0% | |
| CTTCTTACAACGGCATCTAC+GGG | - | chr6_4:27524310-27524329 | None:intergenic | 45.0% | |
| AGATCAAATGGAGGAGAGTC+AGG | + | chr6_4:27524333-27524352 | Msa0983980:CDS | 45.0% | |
| GAGGAGAGTCAGGTTAAAAG+AGG | + | chr6_4:27524343-27524362 | Msa0983980:CDS | 45.0% | |
| !! | GTGGAAAGTGCTAGTGAATG+TGG | - | chr6_4:27524761-27524780 | None:intergenic | 45.0% |
| ! | GGTTTTTGCACGTCTTGCAA+CGG | - | chr6_4:27525298-27525317 | None:intergenic | 45.0% |
| ATACCACACCCTTATATCCG+TGG | + | chr6_4:27525347-27525366 | Msa0983980:intron | 45.0% | |
| TAGGCAATGCCACAAAAACG+TGG | - | chr6_4:27525408-27525427 | None:intergenic | 45.0% | |
| ATATCCTGATACTGACAGGC+GGG | - | chr6_4:27525478-27525497 | None:intergenic | 45.0% | |
| ATTAGACACGCTAGAGGCAA+GGG | + | chr6_4:27525599-27525618 | Msa0983980:intron | 45.0% | |
| AAGAGATTCAAGGCTAGGGT+TGG | + | chr6_4:27525890-27525909 | Msa0983980:intron | 45.0% | |
| ! | TGGGTTGAAGAGCTAGAGTA+TGG | + | chr6_4:27525989-27526008 | Msa0983980:intron | 45.0% |
| !! | TGAAGCTTTGGAAGCAAGCT+AGG | + | chr6_4:27526023-27526042 | Msa0983980:intron | 45.0% |
| TGGTGTGATGCTTGTAAGCT+AGG | + | chr6_4:27526061-27526080 | Msa0983980:intron | 45.0% | |
| GGTGTGATGCTTGTAAGCTA+GGG | + | chr6_4:27526062-27526081 | Msa0983980:intron | 45.0% | |
| GTGTGATGCTTGTAAGCTAG+GGG | + | chr6_4:27526063-27526082 | Msa0983980:intron | 45.0% | |
| !! | AGATGTGTTTGGTGCATTGC+AGG | + | chr6_4:27526303-27526322 | Msa0983980:intron | 45.0% |
| !! | GATGTGTTTGGTGCATTGCA+GGG | + | chr6_4:27526304-27526323 | Msa0983980:intron | 45.0% |
| ! | GGGTCAAATTGGACGAGTTT+TGG | + | chr6_4:27526324-27526343 | Msa0983980:intron | 45.0% |
| !!! | GACGAGTTTTGGGTCGAAAA+TGG | + | chr6_4:27526335-27526354 | Msa0983980:CDS | 45.0% |
| !!! | TTTTCGGTGTTTTCGGCTAC+GGG | - | chr6_4:27526367-27526386 | None:intergenic | 45.0% |
| !!! | GTTTTCGGTGTTTTCGGCTA+CGG | - | chr6_4:27526368-27526387 | None:intergenic | 45.0% |
| ! | CGCTGCGAATTTTGCGTTTT+CGG | - | chr6_4:27526383-27526402 | None:intergenic | 45.0% |
| ! | GACTCGTGATGGAGCGATAT+CGG | + | chr6_4:27523399-27523418 | Msa0983980:CDS | 50.0% |
| TGGAAAGCCCTGGAGAAGAA+AGG | + | chr6_4:27523497-27523516 | Msa0983980:CDS | 50.0% | |
| GGAAAGCCCTGGAGAAGAAA+GGG | + | chr6_4:27523498-27523517 | Msa0983980:CDS | 50.0% | |
| GAAAGCCCTGGAGAAGAAAG+GGG | + | chr6_4:27523499-27523518 | Msa0983980:CDS | 50.0% | |
| AAGCCCCCTCATACATATCC+TGG | - | chr6_4:27523550-27523569 | None:intergenic | 50.0% | |
| AAGGACTTAGGGTTGACCCT+TGG | - | chr6_4:27523634-27523653 | None:intergenic | 50.0% | |
| !! | CTTGCTTGGTGAGTTGATGG+AGG | + | chr6_4:27523739-27523758 | Msa0983980:CDS | 50.0% |
| TGATGGAGGAGTTAAACGGG+AGG | + | chr6_4:27523753-27523772 | Msa0983980:CDS | 50.0% | |
| TAAACGGGAGGCTAGAGACT+TGG | + | chr6_4:27523765-27523784 | Msa0983980:CDS | 50.0% | |
| !! | AGGCAAGCCTTTGAAGTGTG+TGG | + | chr6_4:27523788-27523807 | Msa0983980:CDS | 50.0% |
| ACTCCGTCTTGCTTCTACTC+AGG | - | chr6_4:27523820-27523839 | None:intergenic | 50.0% | |
| AAGAAGTGGGTCTACCTTGG+AGG | + | chr6_4:27523865-27523884 | Msa0983980:CDS | 50.0% | |
| TTATCGGACAGCAGTCAGAC+CGG | + | chr6_4:27524072-27524091 | Msa0983980:CDS | 50.0% | |
| GTCAGACCGGCAATGATGTA+TGG | + | chr6_4:27524085-27524104 | Msa0983980:CDS | 50.0% | |
| ! | AAGTAAGCGTAGCGGAGATG+AGG | + | chr6_4:27524146-27524165 | Msa0983980:CDS | 50.0% |
| CGGAGATGAGGATGTTGTGT+TGG | + | chr6_4:27524158-27524177 | Msa0983980:CDS | 50.0% | |
| ! | AAGCCTTATCCCACTAAGCG+GGG | - | chr6_4:27524489-27524508 | None:intergenic | 50.0% |
| ! | CAAGCCTTATCCCACTAAGC+GGG | - | chr6_4:27524490-27524509 | None:intergenic | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+CGG | - | chr6_4:27524491-27524510 | None:intergenic | 50.0% |
| TGCAAGACGTGCAAAAACCG+TGG | + | chr6_4:27525299-27525318 | Msa0983980:intron | 50.0% | |
| ATATCCCGCCTGTCAGTATC+AGG | + | chr6_4:27525471-27525490 | Msa0983980:intron | 50.0% | |
| AATCATCTGGCACGATCGAC+TGG | - | chr6_4:27525503-27525522 | None:intergenic | 50.0% | |
| ! | TGTCGGATTAGACACGCTAG+AGG | + | chr6_4:27525593-27525612 | Msa0983980:intron | 50.0% |
| GATTAGACACGCTAGAGGCA+AGG | + | chr6_4:27525598-27525617 | Msa0983980:intron | 50.0% | |
| CGATGGAGAGAGTAGAGAGA+AGG | - | chr6_4:27525734-27525753 | None:intergenic | 50.0% | |
| !! | TCAAGGCTAGGGTTGGTTCT+TGG | + | chr6_4:27525897-27525916 | Msa0983980:intron | 50.0% |
| GGTGCATTGCAGGGTCAAAT+TGG | + | chr6_4:27526313-27526332 | Msa0983980:intron | 50.0% | |
| ! | CGTGATGGAGCGATATCGGA+CGG | + | chr6_4:27523403-27523422 | Msa0983980:CDS | 55.0% |
| CCTCACCCCTTTCTTCTCCA+GGG | - | chr6_4:27523507-27523526 | None:intergenic | 55.0% | |
| TCCTCACCCCTTTCTTCTCC+AGG | - | chr6_4:27523508-27523527 | None:intergenic | 55.0% | |
| TTCGACTAGTGTGAGGACGC+AGG | + | chr6_4:27523568-27523587 | Msa0983980:CDS | 55.0% | |
| ACTAGTGTGAGGACGCAGGA+TGG | + | chr6_4:27523572-27523591 | Msa0983980:CDS | 55.0% | |
| GCGGAAGCCACACACTTCAA+AGG | - | chr6_4:27523798-27523817 | None:intergenic | 55.0% | |
| CCGTCTTGCTTCTACTCAGG+CGG | - | chr6_4:27523817-27523836 | None:intergenic | 55.0% | |
| CCGCCTGAGTAGAAGCAAGA+CGG | + | chr6_4:27523814-27523833 | Msa0983980:CDS | 55.0% | |
| !! | GTATGGTACGGAGTGTTGGG+CGG | + | chr6_4:27524102-27524121 | Msa0983980:CDS | 55.0% |
| ATGTAGCTGACCCCGCTTAG+TGG | + | chr6_4:27524476-27524495 | Msa0983980:intron | 55.0% | |
| TGTAGCTGACCCCGCTTAGT+GGG | + | chr6_4:27524477-27524496 | Msa0983980:intron | 55.0% | |
| TGACCCCGCTTAGTGGGATA+AGG | + | chr6_4:27524483-27524502 | Msa0983980:intron | 55.0% | |
| CCGCTTAGTGGGATAAGGCT+TGG | + | chr6_4:27524488-27524507 | Msa0983980:intron | 55.0% | |
| AGGCCACGGATATAAGGGTG+TGG | - | chr6_4:27525353-27525372 | None:intergenic | 55.0% | |
| TGGAGGAGAGGGAGAGAGAA+GGG | - | chr6_4:27525757-27525776 | None:intergenic | 55.0% | |
| TTGGAGGAGAGGGAGAGAGA+AGG | - | chr6_4:27525758-27525777 | None:intergenic | 55.0% | |
| CCCTGGAGAAGAAAGGGGTG+AGG | + | chr6_4:27523504-27523523 | Msa0983980:CDS | 60.0% | |
| AGGGGGCTTCGACTAGTGTG+AGG | + | chr6_4:27523561-27523580 | Msa0983980:CDS | 60.0% | |
| ACGGGAGGCTAGAGACTTGG+AGG | + | chr6_4:27523768-27523787 | Msa0983980:CDS | 60.0% | |
| AGAGGGAGAGAGAAGGGCGA+TGG | - | chr6_4:27525751-27525770 | None:intergenic | 60.0% | |
| GCAGCGCTGCGCTTGTACAA+GGG | + | chr6_4:27526397-27526416 | Msa0983980:CDS | 60.0% | |
| !! | TGCGCTTGTACAAGGGCGCT+AGG | + | chr6_4:27526404-27526423 | Msa0983980:CDS | 60.0% |
| CGCAGCGCTGCGCTTGTACA+AGG | + | chr6_4:27526396-27526415 | Msa0983980:CDS | 65.0% | |
| GCGCTAGGTGCCCACACACA+GGG | + | chr6_4:27526419-27526438 | Msa0983980:CDS | 65.0% | |
| GGCGCTAGGTGCCCACACAC+AGG | + | chr6_4:27526418-27526437 | Msa0983980:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 27523377 | 27526447 | 27523377 | ID=Msa0983980;Name=Msa0983980 |
| chr6_4 | mRNA | 27523377 | 27526447 | 27523377 | ID=Msa0983980-mRNA-1;Parent=Msa0983980;Name=Msa0983980-mRNA-1;_AED=0.80;_eAED=0.80;_QI=0|0|0|0.25|1|1|4|0|460 |
| chr6_4 | exon | 27523377 | 27524364 | 27523377 | ID=Msa0983980-mRNA-1:exon:7789;Parent=Msa0983980-mRNA-1 |
| chr6_4 | exon | 27524630 | 27524798 | 27524630 | ID=Msa0983980-mRNA-1:exon:7790;Parent=Msa0983980-mRNA-1 |
| chr6_4 | exon | 27525706 | 27525808 | 27525706 | ID=Msa0983980-mRNA-1:exon:7791;Parent=Msa0983980-mRNA-1 |
| chr6_4 | exon | 27526325 | 27526447 | 27526325 | ID=Msa0983980-mRNA-1:exon:7792;Parent=Msa0983980-mRNA-1 |
| chr6_4 | CDS | 27523377 | 27524364 | 27523377 | ID=Msa0983980-mRNA-1:cds;Parent=Msa0983980-mRNA-1 |
| chr6_4 | CDS | 27524630 | 27524798 | 27524630 | ID=Msa0983980-mRNA-1:cds;Parent=Msa0983980-mRNA-1 |
| chr6_4 | CDS | 27525706 | 27525808 | 27525706 | ID=Msa0983980-mRNA-1:cds;Parent=Msa0983980-mRNA-1 |
| chr6_4 | CDS | 27526325 | 27526447 | 27526325 | ID=Msa0983980-mRNA-1:cds;Parent=Msa0983980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
