Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0985530 | XP_039688690.1 | 79.293 | 198 | 41 | 0 | 1 | 198 | 1 | 198 | 8.76e-106 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0985530 | sp|A0A109QYD3|RMS3_PEA | 41.791 | 134 | 78 | 0 | 197 | 330 | 129 | 262 | 1.39e-28 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0985530 | A0A396HMX6 | 73.913 | 184 | 48 | 0 | 12 | 195 | 12 | 195 | 2.76e-98 | 300 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0156650 | Msa0985530 | -0.804579 | 2.018366e-49 | -8.615850e-47 |
| Msa0223380 | Msa0985530 | 0.803613 | 3.206355e-49 | -8.615850e-47 |
| Msa0531990 | Msa0985530 | -0.815352 | 9.662182e-52 | -8.615850e-47 |
| Msa0532100 | Msa0985530 | -0.812248 | 4.665290e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0985530 | MtrunA17_Chr5g0393501 | 73.913 | 184 | 48 | 0 | 12 | 195 | 12 | 195 | 5.31e-102 | 300 |
| Msa0985530 | MtrunA17_Chr6g0485021 | 95.804 | 143 | 6 | 0 | 197 | 339 | 142 | 284 | 2.57e-95 | 284 |
| Msa0985530 | MtrunA17_Chr3g0093821 | 60.584 | 137 | 54 | 0 | 198 | 334 | 133 | 269 | 6.94e-53 | 175 |
| Msa0985530 | MtrunA17_Chr1g0152551 | 40.299 | 134 | 80 | 0 | 197 | 330 | 130 | 263 | 6.02e-29 | 112 |
| Msa0985530 | MtrunA17_Chr4g0053741 | 37.594 | 133 | 82 | 1 | 198 | 329 | 77 | 209 | 3.95e-24 | 98.2 |
| Msa0985530 | MtrunA17_Chr5g0401521 | 36.364 | 132 | 83 | 1 | 199 | 329 | 129 | 260 | 6.35e-22 | 94.4 |
| Msa0985530 | MtrunA17_Chr4g0044671 | 23.784 | 185 | 135 | 1 | 36 | 220 | 19 | 197 | 1.13e-13 | 69.3 |
| Msa0985530 | MtrunA17_Chr4g0034781 | 24.432 | 176 | 127 | 1 | 45 | 220 | 22 | 191 | 7.68e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0985530 | AT3G24420.1 | 50.714 | 140 | 68 | 1 | 197 | 335 | 134 | 273 | 8.75e-42 | 147 |
| Msa0985530 | AT3G03990.1 | 40.000 | 135 | 81 | 0 | 199 | 333 | 131 | 265 | 1.48e-28 | 112 |
| Msa0985530 | AT4G37470.1 | 36.364 | 132 | 83 | 1 | 199 | 329 | 129 | 260 | 2.70e-22 | 95.1 |
Find 58 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATGAGCTTCAAGATTAT+TGG | 0.149874 | 6_4:+31998069 | Msa0985530:CDS |
| TAGAATCCAACTATGAAAAT+TGG | 0.176582 | 6_4:+32000736 | Msa0985530:CDS |
| CTAATGTCTTACACATATTT+AGG | 0.187667 | 6_4:+31998212 | Msa0985530:CDS |
| TTCACTGATGGTTCATCATT+TGG | 0.234984 | 6_4:-32000789 | None:intergenic |
| TTGCAAATTGATATTCAAAA+AGG | 0.263631 | 6_4:+31998538 | Msa0985530:CDS |
| TACATGGAGAAGAAAATTAA+AGG | 0.264049 | 6_4:+32000975 | Msa0985530:CDS |
| AGATCCAATTAGTTCAAAAT+TGG | 0.272783 | 6_4:+31998358 | Msa0985530:CDS |
| TTGGAGGTAATTGACACTTT+TGG | 0.320317 | 6_4:+32001008 | Msa0985530:CDS |
| TCAGCTTGTTGATGTGCTTA+AGG | 0.325189 | 6_4:+32001058 | Msa0985530:CDS |
| ATGTAAAGAGCTACACTATA+TGG | 0.336358 | 6_4:-32000957 | None:intergenic |
| CAATTTACCGATCTTTGATT+TGG | 0.339554 | 6_4:-31997864 | None:intergenic |
| GAACTAATTGGATCTTTGTT+TGG | 0.340224 | 6_4:-31998350 | None:intergenic |
| CAGCTTGTTGATGTGCTTAA+GGG | 0.360603 | 6_4:+32001059 | Msa0985530:CDS |
| TTCACTTATTGATGAAGAAC+TGG | 0.380303 | 6_4:-31997835 | None:intergenic |
| TGGACCTTGATAGATGGTTA+TGG | 0.389886 | 6_4:+31998089 | Msa0985530:CDS |
| GATTATTGGACCTTGATAGA+TGG | 0.407428 | 6_4:+31998083 | Msa0985530:CDS |
| AGAATCCAACTATGAAAATT+GGG | 0.411548 | 6_4:+32000737 | Msa0985530:CDS |
| ATTTGGATCCACTACATTTG+TGG | 0.429468 | 6_4:-32000772 | None:intergenic |
| ACATGGAGAAGAAAATTAAA+GGG | 0.433639 | 6_4:+32000976 | Msa0985530:CDS |
| GACGGGAAGTAGTCAATCTA+TGG | 0.441090 | 6_4:-31998298 | None:intergenic |
| TAGCGTGGATATTCATTTGT+TGG | 0.467564 | 6_4:-31998275 | None:intergenic |
| AAATATGTGTAAGACATTAG+TGG | 0.477977 | 6_4:-31998209 | None:intergenic |
| TATAAATACAGATGACTATG+AGG | 0.480351 | 6_4:+32000671 | Msa0985530:intron |
| TTTACCGATCTTTGATTTGG+TGG | 0.485524 | 6_4:-31997861 | None:intergenic |
| CATGAGTATCTAAGATTATG+TGG | 0.488560 | 6_4:+31998494 | Msa0985530:CDS |
| AATTAAAGGGAAAGTTACAT+TGG | 0.494880 | 6_4:+32000989 | Msa0985530:CDS |
| TCTCTGAATTTGTTCACTGA+TGG | 0.500195 | 6_4:-32000801 | None:intergenic |
| TTATTTCTCCACAAATGTAG+TGG | 0.511610 | 6_4:+32000764 | Msa0985530:CDS |
| ATATAGTGTAGCTCTTTACA+TGG | 0.517253 | 6_4:+32000959 | Msa0985530:CDS |
| CACATAATCTTAGATACTCA+TGG | 0.523820 | 6_4:-31998493 | None:intergenic |
| GTCACCGCAAAATACTGTCT+TGG | 0.528801 | 6_4:-32000865 | None:intergenic |
| TAAAGGGAAAGTTACATTGG+AGG | 0.531177 | 6_4:+32000992 | Msa0985530:CDS |
| AGCACATCAACAAGCTGAAG+TGG | 0.536506 | 6_4:-32001053 | None:intergenic |
| AGAAAATTACCAAGGTCAGC+AGG | 0.540158 | 6_4:-31998458 | None:intergenic |
| GAGGTTTGAATAATTGTGCA+TGG | 0.540705 | 6_4:-32000918 | None:intergenic |
| ATTTCCATAACCATCTATCA+AGG | 0.542931 | 6_4:-31998093 | None:intergenic |
| TAGATCCTACCTGCTGACCT+TGG | 0.546213 | 6_4:+31998449 | Msa0985530:intron |
| TTAGATTCGGATGTCATCAA+TGG | 0.553771 | 6_4:-31997897 | None:intergenic |
| TGCCAACCTTGTGTAAGTAT+TGG | 0.565107 | 6_4:-31998152 | None:intergenic |
| ATAAATTTCAGAAATAGTGA+TGG | 0.565592 | 6_4:-31998048 | None:intergenic |
| GCAAAATACTGTCTTGGCTA+AGG | 0.566109 | 6_4:-32000859 | None:intergenic |
| TGCCAATACTTACACAAGGT+TGG | 0.575975 | 6_4:+31998150 | Msa0985530:CDS |
| TAAATTTCAGAAATAGTGAT+GGG | 0.580702 | 6_4:-31998047 | None:intergenic |
| AAATGTAACATCTTTGAGAC+GGG | 0.580831 | 6_4:-31998315 | None:intergenic |
| ACTGTCTTGGCTAAGGACAA+TGG | 0.586584 | 6_4:-32000852 | None:intergenic |
| CAAATGTAACATCTTTGAGA+CGG | 0.586872 | 6_4:-31998316 | None:intergenic |
| TGAAGTGGAGCAGTTAGTTG+AGG | 0.612568 | 6_4:-32001038 | None:intergenic |
| ACTACCACCAAATCAAAGAT+CGG | 0.624198 | 6_4:+31997857 | Msa0985530:CDS |
| ATAAATACAGATGACTATGA+GGG | 0.625313 | 6_4:+32000672 | Msa0985530:intron |
| TATTCAAACCTCTAGTGACA+TGG | 0.628354 | 6_4:+32000929 | Msa0985530:CDS |
| TGAGTTGTAGAAAATTACCA+AGG | 0.641309 | 6_4:-31998466 | None:intergenic |
| AATTACCAAGGTCAGCAGGT+AGG | 0.642673 | 6_4:-31998454 | None:intergenic |
| TGGAACAACCATGTCACTAG+AGG | 0.653480 | 6_4:-32000937 | None:intergenic |
| GTAGTCAATCTATGGTAGCG+TGG | 0.658375 | 6_4:-31998290 | None:intergenic |
| AATACAGATGACTATGAGGG+AGG | 0.668351 | 6_4:+32000675 | Msa0985530:intron |
| CTAATGCCAATACTTACACA+AGG | 0.673680 | 6_4:+31998146 | Msa0985530:CDS |
| GAGTATCTAAGATTATGTGG+AGG | 0.736050 | 6_4:+31998497 | Msa0985530:CDS |
| TTTCATAGCAGTCTGCACAG+AGG | 0.737561 | 6_4:+31997929 | Msa0985530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTTTATTAAAATTATA+TGG | - | chr6_4:31998400-31998419 | None:intergenic | 0.0% |
| !! | AGCAAAATAAAATATAATAA+TGG | - | chr6_4:31997986-31998005 | None:intergenic | 10.0% |
| !! | AAAATGCAAATAATTTAATA+AGG | - | chr6_4:31998430-31998449 | None:intergenic | 10.0% |
| !! | AAATATGTAATAAAATAAAG+AGG | - | chr6_4:31998811-31998830 | None:intergenic | 10.0% |
| !! | TATTAGTAAAATATAAACAT+TGG | + | chr6_4:31999419-31999438 | Msa0985530:intron | 10.0% |
| !! | TAAAGAATAAAATAAGTATA+TGG | + | chr6_4:31999636-31999655 | Msa0985530:intron | 10.0% |
| !!! | TATTCTTTTTTTTTTTTTGA+GGG | - | chr6_4:32000608-32000627 | None:intergenic | 10.0% |
| !!! | TTATTCTTTTTTTTTTTTTG+AGG | - | chr6_4:32000609-32000628 | None:intergenic | 10.0% |
| !! | ACGTAATACAAATAAATAAT+GGG | - | chr6_4:31998860-31998879 | None:intergenic | 15.0% |
| !! | AACGTAATACAAATAAATAA+TGG | - | chr6_4:31998861-31998880 | None:intergenic | 15.0% |
| !!! | AGTTTGTATAAATTTTTTCA+TGG | - | chr6_4:31999330-31999349 | None:intergenic | 15.0% |
| !!! | ATACAAACTCTATTTTTAAA+TGG | + | chr6_4:31999341-31999360 | Msa0985530:intron | 15.0% |
| !!! | AAGTAAATTTGTTTTGTATA+TGG | - | chr6_4:31999398-31999417 | None:intergenic | 15.0% |
| !!! | CTCTATATTTTATTTTTTGT+CGG | - | chr6_4:31999794-31999813 | None:intergenic | 15.0% |
| !!! | TATTTTTATTTGTTAGTTAG+AGG | - | chr6_4:31999828-31999847 | None:intergenic | 15.0% |
| !!! | AACTTTTAATAAAATGTGAT+TGG | + | chr6_4:31999901-31999920 | Msa0985530:intron | 15.0% |
| !! | AATAGATAATTATAAACATG+TGG | - | chr6_4:32000005-32000024 | None:intergenic | 15.0% |
| !! | TAAATTTCAGAAATAGTGAT+GGG | - | chr6_4:31998050-31998069 | None:intergenic | 20.0% |
| !! | ATAAATTTCAGAAATAGTGA+TGG | - | chr6_4:31998051-31998070 | None:intergenic | 20.0% |
| !! | TTTGATAAAAATCTCTGAAT+TGG | - | chr6_4:31998178-31998197 | None:intergenic | 20.0% |
| !!! | TATACCAATTTTGAACTAAT+TGG | - | chr6_4:31998365-31998384 | None:intergenic | 20.0% |
| !! | TTGCAAATTGATATTCAAAA+AGG | + | chr6_4:31998538-31998557 | Msa0985530:CDS | 20.0% |
| !!! | TAATACAAATAAATAATGGG+AGG | - | chr6_4:31998857-31998876 | None:intergenic | 20.0% |
| !!! | TTTTTAAATGGCTGAAATAA+TGG | + | chr6_4:31999353-31999372 | Msa0985530:intron | 20.0% |
| !! | AGAATAAAATAAGTATATGG+TGG | + | chr6_4:31999639-31999658 | Msa0985530:intron | 20.0% |
| !! | ATAATTATAGTGATGTAAGT+GGG | - | chr6_4:31999872-31999891 | None:intergenic | 20.0% |
| !! | AATAATTATAGTGATGTAAG+TGG | - | chr6_4:31999873-31999892 | None:intergenic | 20.0% |
| !! | ACAATATAAGATGATTTCAA+TGG | - | chr6_4:32000359-32000378 | None:intergenic | 20.0% |
| !! | GTTAAAATAAAATGATGTGA+TGG | + | chr6_4:32000480-32000499 | Msa0985530:intron | 20.0% |
| !! | TATTAAAAGATAAACGTCTT+AGG | - | chr6_4:32000541-32000560 | None:intergenic | 20.0% |
| ! | AAATATGTGTAAGACATTAG+TGG | - | chr6_4:31998212-31998231 | None:intergenic | 25.0% |
| ! | CTAATGTCTTACACATATTT+AGG | + | chr6_4:31998212-31998231 | Msa0985530:CDS | 25.0% |
| ! | AGATCCAATTAGTTCAAAAT+TGG | + | chr6_4:31998358-31998377 | Msa0985530:CDS | 25.0% |
| !! | GAGATGATATACTTGTTAAT+AGG | - | chr6_4:31998969-31998988 | None:intergenic | 25.0% |
| ! | TATATCATCTCAATACTCAA+TGG | + | chr6_4:31998978-31998997 | Msa0985530:intron | 25.0% |
| ! | TAACATATAGTGCAAACATA+AGG | - | chr6_4:31999053-31999072 | None:intergenic | 25.0% |
| !! | TTCTCTAAAAAACAGTGATA+TGG | - | chr6_4:31999100-31999119 | None:intergenic | 25.0% |
| !!! | TCCATGCTTTTTTTTTTTTG+AGG | + | chr6_4:31999203-31999222 | Msa0985530:intron | 25.0% |
| !!! | CCATGCTTTTTTTTTTTTGA+GGG | + | chr6_4:31999204-31999223 | Msa0985530:intron | 25.0% |
| !! | TAAAAATAAGGTACTTAGCA+TGG | - | chr6_4:31999242-31999261 | None:intergenic | 25.0% |
| !! | TATGTTGTGATTCCTTTTTA+AGG | + | chr6_4:31999576-31999595 | Msa0985530:intron | 25.0% |
| !!! | TTTTTAAGGTGAATTTGATG+CGG | + | chr6_4:31999590-31999609 | Msa0985530:intron | 25.0% |
| ! | TAATTATAGTGATGTAAGTG+GGG | - | chr6_4:31999871-31999890 | None:intergenic | 25.0% |
| ! | ATTTATACAAGGAAATGTCT+TGG | - | chr6_4:31999967-31999986 | None:intergenic | 25.0% |
| ! | AATCTCTTTGGATTTATACA+AGG | - | chr6_4:31999978-31999997 | None:intergenic | 25.0% |
| !! | AAAATAGAGATGTCAACTTT+TGG | + | chr6_4:32000107-32000126 | Msa0985530:intron | 25.0% |
| !!! | ATTGGTTTTAATAACACCAA+AGG | - | chr6_4:32000145-32000164 | None:intergenic | 25.0% |
| ! | AAGTATGTATACTCATTTGT+AGG | + | chr6_4:32000237-32000256 | Msa0985530:intron | 25.0% |
| ! | TATAAATACAGATGACTATG+AGG | + | chr6_4:32000671-32000690 | Msa0985530:intron | 25.0% |
| ! | ATAAATACAGATGACTATGA+GGG | + | chr6_4:32000672-32000691 | Msa0985530:intron | 25.0% |
| ! | TAGAATCCAACTATGAAAAT+TGG | + | chr6_4:32000736-32000755 | Msa0985530:CDS | 25.0% |
| ! | AGAATCCAACTATGAAAATT+GGG | + | chr6_4:32000737-32000756 | Msa0985530:CDS | 25.0% |
| ! | TACATGGAGAAGAAAATTAA+AGG | + | chr6_4:32000975-32000994 | Msa0985530:CDS | 25.0% |
| ! | ACATGGAGAAGAAAATTAAA+GGG | + | chr6_4:32000976-32000995 | Msa0985530:CDS | 25.0% |
| ! | AATTAAAGGGAAAGTTACAT+TGG | + | chr6_4:32000989-32001008 | Msa0985530:CDS | 25.0% |
| TTCACTTATTGATGAAGAAC+TGG | - | chr6_4:31997838-31997857 | None:intergenic | 30.0% | |
| CAATTTACCGATCTTTGATT+TGG | - | chr6_4:31997867-31997886 | None:intergenic | 30.0% | |
| ATGATGAGCTTCAAGATTAT+TGG | + | chr6_4:31998069-31998088 | Msa0985530:CDS | 30.0% | |
| ATTTCCATAACCATCTATCA+AGG | - | chr6_4:31998096-31998115 | None:intergenic | 30.0% | |
| !! | TTCCAAATCCAGTTTTTCAA+TGG | + | chr6_4:31998245-31998264 | Msa0985530:CDS | 30.0% |
| !! | TCCAAATCCAGTTTTTCAAT+GGG | + | chr6_4:31998246-31998265 | Msa0985530:CDS | 30.0% |
| !! | AAATGTAACATCTTTGAGAC+GGG | - | chr6_4:31998318-31998337 | None:intergenic | 30.0% |
| ! | CAAATGTAACATCTTTGAGA+CGG | - | chr6_4:31998319-31998338 | None:intergenic | 30.0% |
| GAACTAATTGGATCTTTGTT+TGG | - | chr6_4:31998353-31998372 | None:intergenic | 30.0% | |
| TGAGTTGTAGAAAATTACCA+AGG | - | chr6_4:31998469-31998488 | None:intergenic | 30.0% | |
| CACATAATCTTAGATACTCA+TGG | - | chr6_4:31998496-31998515 | None:intergenic | 30.0% | |
| ! | CATGAGTATCTAAGATTATG+TGG | + | chr6_4:31998494-31998513 | Msa0985530:CDS | 30.0% |
| TTAAACTCTAGTATGCTTTC+TGG | - | chr6_4:31998638-31998657 | None:intergenic | 30.0% | |
| GTTTAAGTGTGACTCTATTA+TGG | + | chr6_4:31998652-31998671 | Msa0985530:intron | 30.0% | |
| GTATGTAATAGAGAGATATC+AGG | - | chr6_4:31999167-31999186 | None:intergenic | 30.0% | |
| CCCTCAAAAAAAAAAAAGCA+TGG | - | chr6_4:31999207-31999226 | None:intergenic | 30.0% | |
| AATGAACCAACCAAAACATA+TGG | + | chr6_4:31999501-31999520 | Msa0985530:intron | 30.0% | |
| GCATCAAATTCACCTTAAAA+AGG | - | chr6_4:31999591-31999610 | None:intergenic | 30.0% | |
| AATCTTTAACCTAACGATCT+TGG | - | chr6_4:31999692-31999711 | None:intergenic | 30.0% | |
| ! | TTGGTGGTTCAAATTTCAAA+AGG | - | chr6_4:31999936-31999955 | None:intergenic | 30.0% |
| ! | CCTAAAAGGTTCTTTTTGTT+GGG | - | chr6_4:32000036-32000055 | None:intergenic | 30.0% |
| ! | ACCTAAAAGGTTCTTTTTGT+TGG | - | chr6_4:32000037-32000056 | None:intergenic | 30.0% |
| !! | TTGGTGTCATTAAAAACCTT+TGG | + | chr6_4:32000126-32000145 | Msa0985530:intron | 30.0% |
| TGTGTCTATCTTAGAGAAAT+TGG | - | chr6_4:32000163-32000182 | None:intergenic | 30.0% | |
| ! | AGAAACCCAATTTTCATAGT+TGG | - | chr6_4:32000745-32000764 | None:intergenic | 30.0% |
| ! | TTATTTCTCCACAAATGTAG+TGG | + | chr6_4:32000764-32000783 | Msa0985530:CDS | 30.0% |
| ATGTAAAGAGCTACACTATA+TGG | - | chr6_4:32000960-32000979 | None:intergenic | 30.0% | |
| ATATAGTGTAGCTCTTTACA+TGG | + | chr6_4:32000959-32000978 | Msa0985530:CDS | 30.0% | |
| ACTACCACCAAATCAAAGAT+CGG | + | chr6_4:31997857-31997876 | Msa0985530:CDS | 35.0% | |
| !! | TTTACCGATCTTTGATTTGG+TGG | - | chr6_4:31997864-31997883 | None:intergenic | 35.0% |
| TTAGATTCGGATGTCATCAA+TGG | - | chr6_4:31997900-31997919 | None:intergenic | 35.0% | |
| GAAAAATGGTCGGTTAGATT+CGG | - | chr6_4:31997913-31997932 | None:intergenic | 35.0% | |
| AGACTGCTATGAAAAATGGT+CGG | - | chr6_4:31997923-31997942 | None:intergenic | 35.0% | |
| GATTATTGGACCTTGATAGA+TGG | + | chr6_4:31998083-31998102 | Msa0985530:CDS | 35.0% | |
| CTAATGCCAATACTTACACA+AGG | + | chr6_4:31998146-31998165 | Msa0985530:CDS | 35.0% | |
| ACCCATTGAAAAACTGGATT+TGG | - | chr6_4:31998250-31998269 | None:intergenic | 35.0% | |
| TAGCGTGGATATTCATTTGT+TGG | - | chr6_4:31998278-31998297 | None:intergenic | 35.0% | |
| ! | GAGTATCTAAGATTATGTGG+AGG | + | chr6_4:31998497-31998516 | Msa0985530:CDS | 35.0% |
| TCCTGCAAGTAATTCAACAA+CGG | + | chr6_4:31998562-31998581 | Msa0985530:intron | 35.0% | |
| ATATAGTGCAAACATAAGGC+TGG | - | chr6_4:31999049-31999068 | None:intergenic | 35.0% | |
| TAGATAATGCCAAGATCGTT+AGG | + | chr6_4:31999680-31999699 | Msa0985530:intron | 35.0% | |
| ! | ATTTGTTAGTTAGAGGCATG+TGG | - | chr6_4:31999821-31999840 | None:intergenic | 35.0% |
| GTGGTTCAAATTTCAAAAGG+AGG | - | chr6_4:31999933-31999952 | None:intergenic | 35.0% | |
| AATTTGAACCACCAATTAGC+CGG | + | chr6_4:31999941-31999960 | Msa0985530:intron | 35.0% | |
| ACATGTGGAAGAAATCTCTT+TGG | - | chr6_4:31999990-32000009 | None:intergenic | 35.0% | |
| ! | CCCAACAAAAAGAACCTTTT+AGG | + | chr6_4:32000033-32000052 | Msa0985530:intron | 35.0% |
| TGTATACTCATTTGTAGGTC+AGG | + | chr6_4:32000242-32000261 | Msa0985530:intron | 35.0% | |
| ATTTGGATCCACTACATTTG+TGG | - | chr6_4:32000775-32000794 | None:intergenic | 35.0% | |
| TTCACTGATGGTTCATCATT+TGG | - | chr6_4:32000792-32000811 | None:intergenic | 35.0% | |
| ! | TCTCTGAATTTGTTCACTGA+TGG | - | chr6_4:32000804-32000823 | None:intergenic | 35.0% |
| ! | TTAGCCAAGACAGTATTTTG+CGG | + | chr6_4:32000861-32000880 | Msa0985530:CDS | 35.0% |
| GAGGTTTGAATAATTGTGCA+TGG | - | chr6_4:32000921-32000940 | None:intergenic | 35.0% | |
| TATTCAAACCTCTAGTGACA+TGG | + | chr6_4:32000929-32000948 | Msa0985530:CDS | 35.0% | |
| TAAAGGGAAAGTTACATTGG+AGG | + | chr6_4:32000992-32001011 | Msa0985530:CDS | 35.0% | |
| ! | TTGGAGGTAATTGACACTTT+TGG | + | chr6_4:32001008-32001027 | Msa0985530:CDS | 35.0% |
| !!! | ATGTGCTTAAGGGTGTTTTA+GGG | + | chr6_4:32001069-32001088 | Msa0985530:CDS | 35.0% |
| GTGCAGACTGCTATGAAAAA+TGG | - | chr6_4:31997927-31997946 | None:intergenic | 40.0% | |
| TGGACCTTGATAGATGGTTA+TGG | + | chr6_4:31998089-31998108 | Msa0985530:CDS | 40.0% | |
| TGCCAATACTTACACAAGGT+TGG | + | chr6_4:31998150-31998169 | Msa0985530:CDS | 40.0% | |
| TGCCAACCTTGTGTAAGTAT+TGG | - | chr6_4:31998155-31998174 | None:intergenic | 40.0% | |
| GTGTAGACCCATTGAAAAAC+TGG | - | chr6_4:31998256-31998275 | None:intergenic | 40.0% | |
| AGAAAATTACCAAGGTCAGC+AGG | - | chr6_4:31998461-31998480 | None:intergenic | 40.0% | |
| ACCGTTGTTGAATTACTTGC+AGG | - | chr6_4:31998566-31998585 | None:intergenic | 40.0% | |
| AATTCAACAACGGTGACCAT+TGG | + | chr6_4:31998572-31998591 | Msa0985530:intron | 40.0% | |
| ATTCAACAACGGTGACCATT+GGG | + | chr6_4:31998573-31998592 | Msa0985530:intron | 40.0% | |
| GGCAAAAAAATATGCGCCAA+CGG | + | chr6_4:31999440-31999459 | Msa0985530:intron | 40.0% | |
| !!! | CTGACACCATATGTTTTGGT+TGG | - | chr6_4:31999510-31999529 | None:intergenic | 40.0% |
| ! | CCTACTGACACCATATGTTT+TGG | - | chr6_4:31999514-31999533 | None:intergenic | 40.0% |
| ! | CCAAAACATATGGTGTCAGT+AGG | + | chr6_4:31999511-31999530 | Msa0985530:intron | 40.0% |
| ! | ACATATGGTGTCAGTAGGAT+TGG | + | chr6_4:31999516-31999535 | Msa0985530:intron | 40.0% |
| ! | CATATGGTGTCAGTAGGATT+GGG | + | chr6_4:31999517-31999536 | Msa0985530:intron | 40.0% |
| ATACAAGGAAATGTCTTGGC+CGG | - | chr6_4:31999963-31999982 | None:intergenic | 40.0% | |
| !! | AGAACCTTTTAGGTACAGCT+AGG | + | chr6_4:32000043-32000062 | Msa0985530:intron | 40.0% |
| CTTTCCTAGCTGTACCTAAA+AGG | - | chr6_4:32000050-32000069 | None:intergenic | 40.0% | |
| CATCTGATGTCAAGTGTGAA+CGG | - | chr6_4:32000270-32000289 | None:intergenic | 40.0% | |
| AATACAGATGACTATGAGGG+AGG | + | chr6_4:32000675-32000694 | Msa0985530:intron | 40.0% | |
| GCAAAATACTGTCTTGGCTA+AGG | - | chr6_4:32000862-32000881 | None:intergenic | 40.0% | |
| !! | TCAGCTTGTTGATGTGCTTA+AGG | + | chr6_4:32001058-32001077 | Msa0985530:CDS | 40.0% |
| !! | CAGCTTGTTGATGTGCTTAA+GGG | + | chr6_4:32001059-32001078 | Msa0985530:CDS | 40.0% |
| !!! | GATGTGCTTAAGGGTGTTTT+AGG | + | chr6_4:32001068-32001087 | Msa0985530:CDS | 40.0% |
| TTTCATAGCAGTCTGCACAG+AGG | + | chr6_4:31997929-31997948 | Msa0985530:CDS | 45.0% | |
| ! | GTAGTCAATCTATGGTAGCG+TGG | - | chr6_4:31998293-31998312 | None:intergenic | 45.0% |
| GACGGGAAGTAGTCAATCTA+TGG | - | chr6_4:31998301-31998320 | None:intergenic | 45.0% | |
| AATTACCAAGGTCAGCAGGT+AGG | - | chr6_4:31998457-31998476 | None:intergenic | 45.0% | |
| TAAGGTGAATTTGATGCGGC+TGG | + | chr6_4:31999594-31999613 | Msa0985530:intron | 45.0% | |
| AAATGTCTTGGCCGGCTAAT+TGG | - | chr6_4:31999955-31999974 | None:intergenic | 45.0% | |
| ACTGTCTTGGCTAAGGACAA+TGG | - | chr6_4:32000855-32000874 | None:intergenic | 45.0% | |
| GTCACCGCAAAATACTGTCT+TGG | - | chr6_4:32000868-32000887 | None:intergenic | 45.0% | |
| TGGAACAACCATGTCACTAG+AGG | - | chr6_4:32000940-32000959 | None:intergenic | 45.0% | |
| TGAAGTGGAGCAGTTAGTTG+AGG | - | chr6_4:32001041-32001060 | None:intergenic | 45.0% | |
| AGCACATCAACAAGCTGAAG+TGG | - | chr6_4:32001056-32001075 | None:intergenic | 45.0% | |
| !!! | TAATTTTATTATAACTTATT+CGG | + | chr6_4:31998764-31998783 | Msa0985530:intron | 5.0% |
| !!! | TTTATAATGTTTTAAAAATA+AGG | - | chr6_4:31999254-31999273 | None:intergenic | 5.0% |
| !!! | ATTTTATTCTTTAATTTTTA+TGG | - | chr6_4:31999629-31999648 | None:intergenic | 5.0% |
| TAGATCCTACCTGCTGACCT+TGG | + | chr6_4:31998449-31998468 | Msa0985530:intron | 50.0% | |
| TGATTTCCATCCACGCCCAA+TGG | - | chr6_4:31998591-31998610 | None:intergenic | 50.0% | |
| TGTCAGTAGGATTGGGTGAG+AGG | + | chr6_4:31999524-31999543 | Msa0985530:intron | 50.0% | |
| GTCAGTAGGATTGGGTGAGA+GGG | + | chr6_4:31999525-31999544 | Msa0985530:intron | 50.0% | |
| TCAGTAGGATTGGGTGAGAG+GGG | + | chr6_4:31999526-31999545 | Msa0985530:intron | 50.0% | |
| TGTCTTGGCCGGCTAATTGG+TGG | - | chr6_4:31999952-31999971 | None:intergenic | 55.0% | |
| ACAACGGTGACCATTGGGCG+TGG | + | chr6_4:31998578-31998597 | Msa0985530:intron | 60.0% | |
| CTGTACCCGTGCATACGCAC+GGG | - | chr6_4:31999471-31999490 | None:intergenic | 60.0% | |
| GCTGTACCCGTGCATACGCA+CGG | - | chr6_4:31999472-31999491 | None:intergenic | 60.0% | |
| CGGTGACCATTGGGCGTGGA+TGG | + | chr6_4:31998582-31998601 | Msa0985530:intron | 65.0% | |
| ! | ATACGCACGGGTTGCGCCGT+TGG | - | chr6_4:31999459-31999478 | None:intergenic | 65.0% |
| GCGCAACCCGTGCGTATGCA+CGG | + | chr6_4:31999462-31999481 | Msa0985530:intron | 65.0% | |
| CGCAACCCGTGCGTATGCAC+GGG | + | chr6_4:31999463-31999482 | Msa0985530:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 31997828 | 32001109 | 31997828 | ID=Msa0985530;Name=Msa0985530 |
| chr6_4 | mRNA | 31997828 | 32001109 | 31997828 | ID=Msa0985530-mRNA-1;Parent=Msa0985530;Name=Msa0985530-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|0|0|0.75|1|1|4|0|339 |
| chr6_4 | exon | 31997828 | 31997950 | 31997828 | ID=Msa0985530-mRNA-1:exon:8543;Parent=Msa0985530-mRNA-1 |
| chr6_4 | exon | 31998029 | 31998379 | 31998029 | ID=Msa0985530-mRNA-1:exon:8544;Parent=Msa0985530-mRNA-1 |
| chr6_4 | exon | 31998452 | 31998569 | 31998452 | ID=Msa0985530-mRNA-1:exon:8545;Parent=Msa0985530-mRNA-1 |
| chr6_4 | exon | 32000682 | 32001109 | 32000682 | ID=Msa0985530-mRNA-1:exon:8546;Parent=Msa0985530-mRNA-1 |
| chr6_4 | CDS | 31997828 | 31997950 | 31997828 | ID=Msa0985530-mRNA-1:cds;Parent=Msa0985530-mRNA-1 |
| chr6_4 | CDS | 31998029 | 31998379 | 31998029 | ID=Msa0985530-mRNA-1:cds;Parent=Msa0985530-mRNA-1 |
| chr6_4 | CDS | 31998452 | 31998569 | 31998452 | ID=Msa0985530-mRNA-1:cds;Parent=Msa0985530-mRNA-1 |
| chr6_4 | CDS | 32000682 | 32001109 | 32000682 | ID=Msa0985530-mRNA-1:cds;Parent=Msa0985530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
