AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0156650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0156650 MtrunA17_Chr1g0168301 97.231 325 7 1 1 323 1 325 0.0 613
Msa0156650 MtrunA17_Chr4g0018731 84.375 128 16 2 186 311 47 172 2.04e-24 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0156650 AT2G28910.2 61.310 168 59 3 1 168 1 162 1.54e-53 179
Msa0156650 AT2G28910.1 61.310 168 59 3 1 168 1 162 1.54e-53 179
Msa0156650 AT2G28910.3 61.310 168 59 3 1 168 1 162 1.54e-53 179

Find 93 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATCCTTGTCATCCTTATT+AGG 0.271429 1_4:+23225433 None:intergenic
TGACCCTTATGCACCTAATA+AGG 0.299489 1_4:-23225446 Msa0156650:CDS
TTCGCATGCCTGCGAACAAC+AGG 0.319189 1_4:-23225525 Msa0156650:CDS
TTTGATGCAATGCGGTCATT+GGG 0.356187 1_4:-23225211 Msa0156650:CDS
TCATCCTTATTAGGTGCATA+AGG 0.362970 1_4:+23225442 None:intergenic
TCTGCATCGGGCCCTGCATT+TGG 0.368781 1_4:+23225397 None:intergenic
AAAGGCTGAGAAGGTGGATA+AGG 0.368813 1_4:-23225161 Msa0156650:CDS
TCTGCCATATGCCATGGGTT+TGG 0.371612 1_4:+23225482 None:intergenic
ATCATCAACTGACAGTGATT+CGG 0.382705 1_4:-23224684 Msa0156650:CDS
ACCATGGAGACGATGATTAG+AGG 0.385352 1_4:-23224595 None:intergenic
TCATCAACTGACAGTGATTC+GGG 0.386672 1_4:-23224683 Msa0156650:CDS
GGACACATCCACTTCAGAAT+TGG 0.389713 1_4:+23225327 None:intergenic
TCGAGAGAGCTATTGCTAAA+AGG 0.394999 1_4:-23225066 Msa0156650:CDS
AGAGCTATTGCTAAAAGGTC+TGG 0.395449 1_4:-23225061 Msa0156650:CDS
CAGATGACAGTGATGAATAT+AGG 0.408636 1_4:-23224826 Msa0156650:CDS
GCAAGAAGTGTGGCCGTGTT+GGG 0.427555 1_4:-23225294 Msa0156650:CDS
GCCATATGCCATGGGTTTGG+AGG 0.428657 1_4:+23225485 None:intergenic
CCCTCCAAACCCATGGCATA+TGG 0.432489 1_4:-23225486 Msa0156650:CDS
AAGGCTGAGAAGGTGGATAA+GGG 0.433608 1_4:-23225160 Msa0156650:CDS
AGAGGGAGCACAGGAGAAGC+AGG 0.433789 1_4:-23224862 Msa0156650:CDS
GTCATTGGGGTTGGTTCGAA+TGG 0.450380 1_4:-23225197 Msa0156650:CDS
ACACTTCTTGCAAGCTCCAC+GGG 0.452494 1_4:+23225306 None:intergenic
GCATATGCATTATCTGCATC+GGG 0.453124 1_4:+23225385 None:intergenic
GAGAGGTTCTTATAGAAAGA+AGG 0.453802 1_4:-23225020 Msa0156650:CDS
GGCATATGCATTATCTGCAT+CGG 0.454933 1_4:+23225384 None:intergenic
CTATATTCATCACTGTCATC+TGG 0.458876 1_4:+23224827 None:intergenic
CATCCTTATTAGGTGCATAA+GGG 0.464636 1_4:+23225443 None:intergenic
GTAGGAAGGAGAAGAGGAGA+AGG 0.468769 1_4:-23224787 Msa0156650:CDS
AATGCATATGCCAGCTTCCA+AGG 0.472754 1_4:-23225373 Msa0156650:CDS
CTTCCTCCTCCTCCTTTCAA+CGG 0.477757 1_4:+23224889 None:intergenic
TCTCAAAGTCAGCCAAATGC+AGG 0.481457 1_4:-23225409 Msa0156650:CDS
ACTGACAGTGATTCGGGTGA+TGG 0.486358 1_4:-23224677 Msa0156650:CDS
GGTTCGAATGGATAAGTTGA+AGG 0.486681 1_4:-23225185 Msa0156650:CDS
TAGCAAGCTGTAGAAGTCCT+TGG 0.490240 1_4:+23225356 None:intergenic
GGCATATGGCAGAGTGCCAT+TGG 0.492212 1_4:-23225472 Msa0156650:CDS
ATGAATATAGGCACAAGAAA+AGG 0.494769 1_4:-23224814 Msa0156650:CDS
TGGATATGATGGTTCAAGGA+AGG 0.495433 1_4:-23224657 Msa0156650:CDS
CTGTAGAAGTCCTTGGAAGC+TGG 0.496883 1_4:+23225363 None:intergenic
TGCAAGAAGTGTGGCCGTGT+TGG 0.503344 1_4:-23225295 Msa0156650:CDS
CAAAGATGACAAGGAGGAGA+AGG 0.506036 1_4:-23225236 Msa0156650:CDS
GAAGGGAAAGGCTGAGAAGG+TGG 0.507445 1_4:-23225167 Msa0156650:CDS
TCCTCTAATCATCGTCTCCA+TGG 0.508879 1_4:+23224594 None:intergenic
GGAAGAGTAGGAAGGAGAAG+AGG 0.509538 1_4:-23224793 Msa0156650:CDS
GTTGAAGGGAAAGGCTGAGA+AGG 0.510374 1_4:-23225170 Msa0156650:CDS
CTTAAGATGCCGGCTACAGC+AGG 0.510845 1_4:-23225553 None:intergenic
TGCAATGCGGTCATTGGGGT+TGG 0.513416 1_4:-23225206 Msa0156650:CDS
GAGCTATTGCTAAAAGGTCT+GGG 0.516028 1_4:-23225060 Msa0156650:CDS
AGAGAGGTAGGGAAAAGAAA+AGG 0.516059 1_4:-23224952 Msa0156650:CDS
GTGATGGATATGATGGTTCA+AGG 0.523675 1_4:-23224661 Msa0156650:CDS
CACACTTCTTGCAAGCTCCA+CGG 0.529458 1_4:+23225305 None:intergenic
GGATATGATGGTTCAAGGAA+GGG 0.532761 1_4:-23224656 Msa0156650:CDS
ATGATGGTTCAAGGAAGGGT+AGG 0.535208 1_4:-23224652 Msa0156650:CDS
TGGCACTCTGCCATATGCCA+TGG 0.538082 1_4:+23225476 None:intergenic
CCATATGCCATGGGTTTGGA+GGG 0.538353 1_4:+23225486 None:intergenic
TTTCAGATGATTCCGTTGAA+AGG 0.540800 1_4:-23224901 Msa0156650:CDS
AAGAAAGTTAGTGAGAAGAG+AGG 0.546996 1_4:-23225037 Msa0156650:CDS
TGATGGTTCAAGGAAGGGTA+GGG 0.549960 1_4:-23224651 Msa0156650:CDS
CAGATGATTCCGTTGAAAGG+AGG 0.552094 1_4:-23224898 Msa0156650:CDS
ATGATTCCGTTGAAAGGAGG+AGG 0.553371 1_4:-23224895 Msa0156650:CDS
GGCACAAGAAAAGGAAGAGT+AGG 0.560603 1_4:-23224805 Msa0156650:CDS
TGTTGAGAGCTCAGAAGAGG+AGG 0.561377 1_4:-23225131 Msa0156650:CDS
CTGTGAACCCTGTTGTTCGC+AGG 0.564502 1_4:+23225517 None:intergenic
GGCACTCTGCCATATGCCAT+GGG 0.575450 1_4:+23225477 None:intergenic
GGGAGCACAGGAGAAGCAGG+AGG 0.583388 1_4:-23224859 Msa0156650:CDS
GTTCGAATGGATAAGTTGAA+GGG 0.584365 1_4:-23225184 Msa0156650:CDS
GATGCCGGCTACAGCAGGTA+GGG 0.587055 1_4:-23225548 Msa0156650:CDS
CAAGAAAAGGAAGAGTAGGA+AGG 0.588243 1_4:-23224801 Msa0156650:CDS
CAATGTTGAGAGCTCAGAAG+AGG 0.592360 1_4:-23225134 Msa0156650:CDS
ATTCCGTTGAAAGGAGGAGG+AGG 0.595082 1_4:-23224892 Msa0156650:CDS
TAAGATAACCAATTCTGAAG+TGG 0.602004 1_4:-23225335 Msa0156650:CDS
ATGCCGCGAAGTAGAATCCT+CGG 0.602845 1_4:+23224730 None:intergenic
GATTCGGGTGATGGATATGA+TGG 0.604978 1_4:-23224668 Msa0156650:CDS
CGAACCCTACCTGCTGTAGC+CGG 0.605040 1_4:+23225544 None:intergenic
TGCATAAGGGTCATAGCCAA+TGG 0.608888 1_4:+23225456 None:intergenic
AGATGCCGGCTACAGCAGGT+AGG 0.611700 1_4:-23225549 Msa0156650:CDS
TTCTGATTCTGAAACATCCG+AGG 0.615461 1_4:-23224747 Msa0156650:CDS
CATCCGAGGATTCTACTTCG+CGG 0.620003 1_4:-23224733 Msa0156650:CDS
GGAGCACAGGAGAAGCAGGA+GGG 0.620957 1_4:-23224858 Msa0156650:CDS
AATGGATAAGTTGAAGGGAA+AGG 0.622406 1_4:-23225179 Msa0156650:CDS
CGTGGAGCTTGCAAGAAGTG+TGG 0.622651 1_4:-23225304 Msa0156650:CDS
TGTTCTTGCACTGAAACTTG+AGG 0.624243 1_4:+23225269 None:intergenic
CTCAAAGTCAGCCAAATGCA+GGG 0.628373 1_4:-23225408 Msa0156650:CDS
TGCACCTAATAAGGATGACA+AGG 0.631127 1_4:-23225437 Msa0156650:CDS
AGTGCAGCCCTCCAAACCCA+TGG 0.642591 1_4:-23225493 Msa0156650:CDS
AAGAGGAAGAGACACCACCA+TGG 0.645211 1_4:-23224611 Msa0156650:CDS
AAGGAGTGTTAAGACTAAGA+CGG 0.651883 1_4:-23224933 Msa0156650:CDS
GAAACTTGAGGTGCCCAACA+CGG 0.656694 1_4:+23225281 None:intergenic
TGTGAAAATCAAAGATGACA+AGG 0.663600 1_4:-23225245 Msa0156650:CDS
TCTAATCATCGTCTCCATGG+TGG 0.666982 1_4:+23224597 None:intergenic
GAAAATCAAAGATGACAAGG+AGG 0.668843 1_4:-23225242 Msa0156650:CDS
TTGATGCAATGCGGTCATTG+GGG 0.669956 1_4:-23225210 Msa0156650:CDS
TCTGAAGTGGATGTGTCCCG+TGG 0.679307 1_4:-23225322 Msa0156650:CDS
TCGCATGCCTGCGAACAACA+GGG 0.684833 1_4:-23225524 Msa0156650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAAAAAATCAGAAAAG+AGG - chr1_4:23225517-23225536 Msa0156650:CDS 15.0%
!! ATATAAAAAAATCAGAAAAG+AGG - chr1_4:23225517-23225536 Msa0156650:CDS 15.0%
! TAAGATAACCAATTCTGAAG+TGG - chr1_4:23224810-23224829 Msa0156650:CDS 30.0%
TGTGAAAATCAAAGATGACA+AGG - chr1_4:23224900-23224919 Msa0156650:CDS 30.0%
!!! TACCTCTCTTTTTTCTCTTT+CGG + chr1_4:23225182-23225201 None:intergenic 30.0%
AAAGAGAAAAAAGAGAGGTA+GGG - chr1_4:23225182-23225201 Msa0156650:CDS 30.0%
ATGAATATAGGCACAAGAAA+AGG - chr1_4:23225331-23225350 Msa0156650:CDS 30.0%
! TAAGATAACCAATTCTGAAG+TGG - chr1_4:23224810-23224829 Msa0156650:CDS 30.0%
TGTGAAAATCAAAGATGACA+AGG - chr1_4:23224900-23224919 Msa0156650:CDS 30.0%
!!! TACCTCTCTTTTTTCTCTTT+CGG + chr1_4:23225182-23225201 None:intergenic 30.0%
AAAGAGAAAAAAGAGAGGTA+GGG - chr1_4:23225182-23225201 Msa0156650:CDS 30.0%
ATGAATATAGGCACAAGAAA+AGG - chr1_4:23225331-23225350 Msa0156650:CDS 30.0%
CATCCTTATTAGGTGCATAA+GGG + chr1_4:23224705-23224724 None:intergenic 35.0%
TCATCCTTATTAGGTGCATA+AGG + chr1_4:23224706-23224725 None:intergenic 35.0%
GAAAATCAAAGATGACAAGG+AGG - chr1_4:23224903-23224922 Msa0156650:CDS 35.0%
!! AGAAGGATTTTGATGCAATG+CGG - chr1_4:23224926-23224945 Msa0156650:CDS 35.0%
! GTTCGAATGGATAAGTTGAA+GGG - chr1_4:23224961-23224980 Msa0156650:CDS 35.0%
! AATGGATAAGTTGAAGGGAA+AGG - chr1_4:23224966-23224985 Msa0156650:CDS 35.0%
AAGAAAGTTAGTGAGAAGAG+AGG - chr1_4:23225108-23225127 Msa0156650:CDS 35.0%
GAGAGGTTCTTATAGAAAGA+AGG - chr1_4:23225125-23225144 Msa0156650:CDS 35.0%
GAAAGAGAAAAAAGAGAGGT+AGG - chr1_4:23225181-23225200 Msa0156650:CDS 35.0%
!! AAGGAGTGTTAAGACTAAGA+CGG - chr1_4:23225212-23225231 Msa0156650:CDS 35.0%
TTTCAGATGATTCCGTTGAA+AGG - chr1_4:23225244-23225263 Msa0156650:CDS 35.0%
CTATATTCATCACTGTCATC+TGG + chr1_4:23225321-23225340 None:intergenic 35.0%
CAGATGACAGTGATGAATAT+AGG - chr1_4:23225319-23225338 Msa0156650:CDS 35.0%
ATCATCAACTGACAGTGATT+CGG - chr1_4:23225461-23225480 Msa0156650:CDS 35.0%
CATCCTTATTAGGTGCATAA+GGG + chr1_4:23224705-23224724 None:intergenic 35.0%
TCATCCTTATTAGGTGCATA+AGG + chr1_4:23224706-23224725 None:intergenic 35.0%
GAAAATCAAAGATGACAAGG+AGG - chr1_4:23224903-23224922 Msa0156650:CDS 35.0%
!! AGAAGGATTTTGATGCAATG+CGG - chr1_4:23224926-23224945 Msa0156650:CDS 35.0%
! GTTCGAATGGATAAGTTGAA+GGG - chr1_4:23224961-23224980 Msa0156650:CDS 35.0%
! AATGGATAAGTTGAAGGGAA+AGG - chr1_4:23224966-23224985 Msa0156650:CDS 35.0%
AAGAAAGTTAGTGAGAAGAG+AGG - chr1_4:23225108-23225127 Msa0156650:CDS 35.0%
GAGAGGTTCTTATAGAAAGA+AGG - chr1_4:23225125-23225144 Msa0156650:CDS 35.0%
GAAAGAGAAAAAAGAGAGGT+AGG - chr1_4:23225181-23225200 Msa0156650:CDS 35.0%
!! AAGGAGTGTTAAGACTAAGA+CGG - chr1_4:23225212-23225231 Msa0156650:CDS 35.0%
TTTCAGATGATTCCGTTGAA+AGG - chr1_4:23225244-23225263 Msa0156650:CDS 35.0%
CTATATTCATCACTGTCATC+TGG + chr1_4:23225321-23225340 None:intergenic 35.0%
CAGATGACAGTGATGAATAT+AGG - chr1_4:23225319-23225338 Msa0156650:CDS 35.0%
ATCATCAACTGACAGTGATT+CGG - chr1_4:23225461-23225480 Msa0156650:CDS 35.0%
TGACCCTTATGCACCTAATA+AGG - chr1_4:23224699-23224718 Msa0156650:CDS 40.0%
TGCACCTAATAAGGATGACA+AGG - chr1_4:23224708-23224727 Msa0156650:CDS 40.0%
GCATCCTTGTCATCCTTATT+AGG + chr1_4:23224715-23224734 None:intergenic 40.0%
GCATATGCATTATCTGCATC+GGG + chr1_4:23224763-23224782 None:intergenic 40.0%
GGCATATGCATTATCTGCAT+CGG + chr1_4:23224764-23224783 None:intergenic 40.0%
TGTTCTTGCACTGAAACTTG+AGG + chr1_4:23224879-23224898 None:intergenic 40.0%
! TTTTGATGCAATGCGGTCAT+TGG - chr1_4:23224933-23224952 Msa0156650:CDS 40.0%
TTTGATGCAATGCGGTCATT+GGG - chr1_4:23224934-23224953 Msa0156650:CDS 40.0%
! GGTTCGAATGGATAAGTTGA+AGG - chr1_4:23224960-23224979 Msa0156650:CDS 40.0%
TCGAGAGAGCTATTGCTAAA+AGG - chr1_4:23225079-23225098 Msa0156650:CDS 40.0%
AGAGCTATTGCTAAAAGGTC+TGG - chr1_4:23225084-23225103 Msa0156650:CDS 40.0%
GAGCTATTGCTAAAAGGTCT+GGG - chr1_4:23225085-23225104 Msa0156650:CDS 40.0%
GACCGAAAGAGAAAAAAGAG+AGG - chr1_4:23225177-23225196 Msa0156650:CDS 40.0%
AGAGAGGTAGGGAAAAGAAA+AGG - chr1_4:23225193-23225212 Msa0156650:CDS 40.0%
CAAGAAAAGGAAGAGTAGGA+AGG - chr1_4:23225344-23225363 Msa0156650:CDS 40.0%
!! TTCTGATTCTGAAACATCCG+AGG - chr1_4:23225398-23225417 Msa0156650:CDS 40.0%
TCATCAACTGACAGTGATTC+GGG - chr1_4:23225462-23225481 Msa0156650:CDS 40.0%
!! GTGATGGATATGATGGTTCA+AGG - chr1_4:23225484-23225503 Msa0156650:CDS 40.0%
TGGATATGATGGTTCAAGGA+AGG - chr1_4:23225488-23225507 Msa0156650:CDS 40.0%
GGATATGATGGTTCAAGGAA+GGG - chr1_4:23225489-23225508 Msa0156650:CDS 40.0%
TGACCCTTATGCACCTAATA+AGG - chr1_4:23224699-23224718 Msa0156650:CDS 40.0%
TGCACCTAATAAGGATGACA+AGG - chr1_4:23224708-23224727 Msa0156650:CDS 40.0%
GCATCCTTGTCATCCTTATT+AGG + chr1_4:23224715-23224734 None:intergenic 40.0%
GCATATGCATTATCTGCATC+GGG + chr1_4:23224763-23224782 None:intergenic 40.0%
GGCATATGCATTATCTGCAT+CGG + chr1_4:23224764-23224783 None:intergenic 40.0%
TGTTCTTGCACTGAAACTTG+AGG + chr1_4:23224879-23224898 None:intergenic 40.0%
! TTTTGATGCAATGCGGTCAT+TGG - chr1_4:23224933-23224952 Msa0156650:CDS 40.0%
TTTGATGCAATGCGGTCATT+GGG - chr1_4:23224934-23224953 Msa0156650:CDS 40.0%
! GGTTCGAATGGATAAGTTGA+AGG - chr1_4:23224960-23224979 Msa0156650:CDS 40.0%
TCGAGAGAGCTATTGCTAAA+AGG - chr1_4:23225079-23225098 Msa0156650:CDS 40.0%
AGAGCTATTGCTAAAAGGTC+TGG - chr1_4:23225084-23225103 Msa0156650:CDS 40.0%
GAGCTATTGCTAAAAGGTCT+GGG - chr1_4:23225085-23225104 Msa0156650:CDS 40.0%
GACCGAAAGAGAAAAAAGAG+AGG - chr1_4:23225177-23225196 Msa0156650:CDS 40.0%
AGAGAGGTAGGGAAAAGAAA+AGG - chr1_4:23225193-23225212 Msa0156650:CDS 40.0%
CAAGAAAAGGAAGAGTAGGA+AGG - chr1_4:23225344-23225363 Msa0156650:CDS 40.0%
!! TTCTGATTCTGAAACATCCG+AGG - chr1_4:23225398-23225417 Msa0156650:CDS 40.0%
TCATCAACTGACAGTGATTC+GGG - chr1_4:23225462-23225481 Msa0156650:CDS 40.0%
!! GTGATGGATATGATGGTTCA+AGG - chr1_4:23225484-23225503 Msa0156650:CDS 40.0%
TGGATATGATGGTTCAAGGA+AGG - chr1_4:23225488-23225507 Msa0156650:CDS 40.0%
GGATATGATGGTTCAAGGAA+GGG - chr1_4:23225489-23225508 Msa0156650:CDS 40.0%
TGCATAAGGGTCATAGCCAA+TGG + chr1_4:23224692-23224711 None:intergenic 45.0%
TCTCAAAGTCAGCCAAATGC+AGG - chr1_4:23224736-23224755 Msa0156650:CDS 45.0%
CTCAAAGTCAGCCAAATGCA+GGG - chr1_4:23224737-23224756 Msa0156650:CDS 45.0%
AATGCATATGCCAGCTTCCA+AGG - chr1_4:23224772-23224791 Msa0156650:CDS 45.0%
TAGCAAGCTGTAGAAGTCCT+TGG + chr1_4:23224792-23224811 None:intergenic 45.0%
GGACACATCCACTTCAGAAT+TGG + chr1_4:23224821-23224840 None:intergenic 45.0%
CAAAGATGACAAGGAGGAGA+AGG - chr1_4:23224909-23224928 Msa0156650:CDS 45.0%
TTGATGCAATGCGGTCATTG+GGG - chr1_4:23224935-23224954 Msa0156650:CDS 45.0%
AAAGGCTGAGAAGGTGGATA+AGG - chr1_4:23224984-23225003 Msa0156650:CDS 45.0%
AAGGCTGAGAAGGTGGATAA+GGG - chr1_4:23224985-23225004 Msa0156650:CDS 45.0%
CAATGTTGAGAGCTCAGAAG+AGG - chr1_4:23225011-23225030 Msa0156650:CDS 45.0%
CAGATGATTCCGTTGAAAGG+AGG - chr1_4:23225247-23225266 Msa0156650:CDS 45.0%
ATGATTCCGTTGAAAGGAGG+AGG - chr1_4:23225250-23225269 Msa0156650:CDS 45.0%
GAGGAGGAGGAAGAAAAAGA+GGG - chr1_4:23225266-23225285 Msa0156650:CDS 45.0%
GGCACAAGAAAAGGAAGAGT+AGG - chr1_4:23225340-23225359 Msa0156650:CDS 45.0%
GGCATAAGCGAAAAAGCAAG+CGG - chr1_4:23225433-23225452 Msa0156650:CDS 45.0%
!! GATTCGGGTGATGGATATGA+TGG - chr1_4:23225477-23225496 Msa0156650:CDS 45.0%
ATGATGGTTCAAGGAAGGGT+AGG - chr1_4:23225493-23225512 Msa0156650:CDS 45.0%
TGATGGTTCAAGGAAGGGTA+GGG - chr1_4:23225494-23225513 Msa0156650:CDS 45.0%
TGCATAAGGGTCATAGCCAA+TGG + chr1_4:23224692-23224711 None:intergenic 45.0%
TCTCAAAGTCAGCCAAATGC+AGG - chr1_4:23224736-23224755 Msa0156650:CDS 45.0%
CTCAAAGTCAGCCAAATGCA+GGG - chr1_4:23224737-23224756 Msa0156650:CDS 45.0%
AATGCATATGCCAGCTTCCA+AGG - chr1_4:23224772-23224791 Msa0156650:CDS 45.0%
TAGCAAGCTGTAGAAGTCCT+TGG + chr1_4:23224792-23224811 None:intergenic 45.0%
GGACACATCCACTTCAGAAT+TGG + chr1_4:23224821-23224840 None:intergenic 45.0%
CAAAGATGACAAGGAGGAGA+AGG - chr1_4:23224909-23224928 Msa0156650:CDS 45.0%
TTGATGCAATGCGGTCATTG+GGG - chr1_4:23224935-23224954 Msa0156650:CDS 45.0%
AAAGGCTGAGAAGGTGGATA+AGG - chr1_4:23224984-23225003 Msa0156650:CDS 45.0%
AAGGCTGAGAAGGTGGATAA+GGG - chr1_4:23224985-23225004 Msa0156650:CDS 45.0%
CAATGTTGAGAGCTCAGAAG+AGG - chr1_4:23225011-23225030 Msa0156650:CDS 45.0%
CAGATGATTCCGTTGAAAGG+AGG - chr1_4:23225247-23225266 Msa0156650:CDS 45.0%
ATGATTCCGTTGAAAGGAGG+AGG - chr1_4:23225250-23225269 Msa0156650:CDS 45.0%
GAGGAGGAGGAAGAAAAAGA+GGG - chr1_4:23225266-23225285 Msa0156650:CDS 45.0%
GGCACAAGAAAAGGAAGAGT+AGG - chr1_4:23225340-23225359 Msa0156650:CDS 45.0%
GGCATAAGCGAAAAAGCAAG+CGG - chr1_4:23225433-23225452 Msa0156650:CDS 45.0%
!! GATTCGGGTGATGGATATGA+TGG - chr1_4:23225477-23225496 Msa0156650:CDS 45.0%
ATGATGGTTCAAGGAAGGGT+AGG - chr1_4:23225493-23225512 Msa0156650:CDS 45.0%
TGATGGTTCAAGGAAGGGTA+GGG - chr1_4:23225494-23225513 Msa0156650:CDS 45.0%
CCATATGCCATGGGTTTGGA+GGG + chr1_4:23224662-23224681 None:intergenic 50.0%
TCTGCCATATGCCATGGGTT+TGG + chr1_4:23224666-23224685 None:intergenic 50.0%
CTGTAGAAGTCCTTGGAAGC+TGG + chr1_4:23224785-23224804 None:intergenic 50.0%
ACACTTCTTGCAAGCTCCAC+GGG + chr1_4:23224842-23224861 None:intergenic 50.0%
CACACTTCTTGCAAGCTCCA+CGG + chr1_4:23224843-23224862 None:intergenic 50.0%
! GAAACTTGAGGTGCCCAACA+CGG + chr1_4:23224867-23224886 None:intergenic 50.0%
!! GTCATTGGGGTTGGTTCGAA+TGG - chr1_4:23224948-23224967 Msa0156650:CDS 50.0%
GTTGAAGGGAAAGGCTGAGA+AGG - chr1_4:23224975-23224994 Msa0156650:CDS 50.0%
TGTTGAGAGCTCAGAAGAGG+AGG - chr1_4:23225014-23225033 Msa0156650:CDS 50.0%
ATTCCGTTGAAAGGAGGAGG+AGG - chr1_4:23225253-23225272 Msa0156650:CDS 50.0%
CTTCCTCCTCCTCCTTTCAA+CGG + chr1_4:23225259-23225278 None:intergenic 50.0%
GGAGGAGGAGGAAGAAAAAG+AGG - chr1_4:23225265-23225284 Msa0156650:CDS 50.0%
! GGAAGAAAAAGAGGGAGCAC+AGG - chr1_4:23225274-23225293 Msa0156650:CDS 50.0%
GGAAGAGTAGGAAGGAGAAG+AGG - chr1_4:23225352-23225371 Msa0156650:CDS 50.0%
GTAGGAAGGAGAAGAGGAGA+AGG - chr1_4:23225358-23225377 Msa0156650:CDS 50.0%
CATCCGAGGATTCTACTTCG+CGG - chr1_4:23225412-23225431 Msa0156650:CDS 50.0%
ATGCCGCGAAGTAGAATCCT+CGG + chr1_4:23225418-23225437 None:intergenic 50.0%
! ACTGACAGTGATTCGGGTGA+TGG - chr1_4:23225468-23225487 Msa0156650:CDS 50.0%
AAGAGGAAGAGACACCACCA+TGG - chr1_4:23225534-23225553 Msa0156650:CDS 50.0%
CCATATGCCATGGGTTTGGA+GGG + chr1_4:23224662-23224681 None:intergenic 50.0%
TCTGCCATATGCCATGGGTT+TGG + chr1_4:23224666-23224685 None:intergenic 50.0%
CTGTAGAAGTCCTTGGAAGC+TGG + chr1_4:23224785-23224804 None:intergenic 50.0%
ACACTTCTTGCAAGCTCCAC+GGG + chr1_4:23224842-23224861 None:intergenic 50.0%
CACACTTCTTGCAAGCTCCA+CGG + chr1_4:23224843-23224862 None:intergenic 50.0%
! GAAACTTGAGGTGCCCAACA+CGG + chr1_4:23224867-23224886 None:intergenic 50.0%
!! GTCATTGGGGTTGGTTCGAA+TGG - chr1_4:23224948-23224967 Msa0156650:CDS 50.0%
GTTGAAGGGAAAGGCTGAGA+AGG - chr1_4:23224975-23224994 Msa0156650:CDS 50.0%
TGTTGAGAGCTCAGAAGAGG+AGG - chr1_4:23225014-23225033 Msa0156650:CDS 50.0%
ATTCCGTTGAAAGGAGGAGG+AGG - chr1_4:23225253-23225272 Msa0156650:CDS 50.0%
CTTCCTCCTCCTCCTTTCAA+CGG + chr1_4:23225259-23225278 None:intergenic 50.0%
GGAGGAGGAGGAAGAAAAAG+AGG - chr1_4:23225265-23225284 Msa0156650:CDS 50.0%
! GGAAGAAAAAGAGGGAGCAC+AGG - chr1_4:23225274-23225293 Msa0156650:CDS 50.0%
GGAAGAGTAGGAAGGAGAAG+AGG - chr1_4:23225352-23225371 Msa0156650:CDS 50.0%
GTAGGAAGGAGAAGAGGAGA+AGG - chr1_4:23225358-23225377 Msa0156650:CDS 50.0%
CATCCGAGGATTCTACTTCG+CGG - chr1_4:23225412-23225431 Msa0156650:CDS 50.0%
ATGCCGCGAAGTAGAATCCT+CGG + chr1_4:23225418-23225437 None:intergenic 50.0%
! ACTGACAGTGATTCGGGTGA+TGG - chr1_4:23225468-23225487 Msa0156650:CDS 50.0%
AAGAGGAAGAGACACCACCA+TGG - chr1_4:23225534-23225553 Msa0156650:CDS 50.0%
TTCGCATGCCTGCGAACAAC+AGG - chr1_4:23224620-23224639 Msa0156650:CDS 55.0%
TCGCATGCCTGCGAACAACA+GGG - chr1_4:23224621-23224640 Msa0156650:CDS 55.0%
CTGTGAACCCTGTTGTTCGC+AGG + chr1_4:23224631-23224650 None:intergenic 55.0%
CCCTCCAAACCCATGGCATA+TGG - chr1_4:23224659-23224678 Msa0156650:CDS 55.0%
GCCATATGCCATGGGTTTGG+AGG + chr1_4:23224663-23224682 None:intergenic 55.0%
GGCACTCTGCCATATGCCAT+GGG + chr1_4:23224671-23224690 None:intergenic 55.0%
TGGCACTCTGCCATATGCCA+TGG + chr1_4:23224672-23224691 None:intergenic 55.0%
! GGCATATGGCAGAGTGCCAT+TGG - chr1_4:23224673-23224692 Msa0156650:CDS 55.0%
! TCTGAAGTGGATGTGTCCCG+TGG - chr1_4:23224823-23224842 Msa0156650:CDS 55.0%
CGTGGAGCTTGCAAGAAGTG+TGG - chr1_4:23224841-23224860 Msa0156650:CDS 55.0%
! TGCAAGAAGTGTGGCCGTGT+TGG - chr1_4:23224850-23224869 Msa0156650:CDS 55.0%
! GCAAGAAGTGTGGCCGTGTT+GGG - chr1_4:23224851-23224870 Msa0156650:CDS 55.0%
TGCAATGCGGTCATTGGGGT+TGG - chr1_4:23224939-23224958 Msa0156650:CDS 55.0%
GAAGGGAAAGGCTGAGAAGG+TGG - chr1_4:23224978-23224997 Msa0156650:CDS 55.0%
TTCGCATGCCTGCGAACAAC+AGG - chr1_4:23224620-23224639 Msa0156650:CDS 55.0%
TCGCATGCCTGCGAACAACA+GGG - chr1_4:23224621-23224640 Msa0156650:CDS 55.0%
CTGTGAACCCTGTTGTTCGC+AGG + chr1_4:23224631-23224650 None:intergenic 55.0%
CCCTCCAAACCCATGGCATA+TGG - chr1_4:23224659-23224678 Msa0156650:CDS 55.0%
GCCATATGCCATGGGTTTGG+AGG + chr1_4:23224663-23224682 None:intergenic 55.0%
GGCACTCTGCCATATGCCAT+GGG + chr1_4:23224671-23224690 None:intergenic 55.0%
TGGCACTCTGCCATATGCCA+TGG + chr1_4:23224672-23224691 None:intergenic 55.0%
! GGCATATGGCAGAGTGCCAT+TGG - chr1_4:23224673-23224692 Msa0156650:CDS 55.0%
! TCTGAAGTGGATGTGTCCCG+TGG - chr1_4:23224823-23224842 Msa0156650:CDS 55.0%
CGTGGAGCTTGCAAGAAGTG+TGG - chr1_4:23224841-23224860 Msa0156650:CDS 55.0%
! TGCAAGAAGTGTGGCCGTGT+TGG - chr1_4:23224850-23224869 Msa0156650:CDS 55.0%
! GCAAGAAGTGTGGCCGTGTT+GGG - chr1_4:23224851-23224870 Msa0156650:CDS 55.0%
TGCAATGCGGTCATTGGGGT+TGG - chr1_4:23224939-23224958 Msa0156650:CDS 55.0%
GAAGGGAAAGGCTGAGAAGG+TGG - chr1_4:23224978-23224997 Msa0156650:CDS 55.0%
CGAACCCTACCTGCTGTAGC+CGG + chr1_4:23224604-23224623 None:intergenic 60.0%
AGTGCAGCCCTCCAAACCCA+TGG - chr1_4:23224652-23224671 Msa0156650:CDS 60.0%
TCTGCATCGGGCCCTGCATT+TGG + chr1_4:23224751-23224770 None:intergenic 60.0%
! AGAGGGAGCACAGGAGAAGC+AGG - chr1_4:23225283-23225302 Msa0156650:CDS 60.0%
GGAGCACAGGAGAAGCAGGA+GGG - chr1_4:23225287-23225306 Msa0156650:CDS 60.0%
CGAACCCTACCTGCTGTAGC+CGG + chr1_4:23224604-23224623 None:intergenic 60.0%
AGTGCAGCCCTCCAAACCCA+TGG - chr1_4:23224652-23224671 Msa0156650:CDS 60.0%
TCTGCATCGGGCCCTGCATT+TGG + chr1_4:23224751-23224770 None:intergenic 60.0%
! AGAGGGAGCACAGGAGAAGC+AGG - chr1_4:23225283-23225302 Msa0156650:CDS 60.0%
GGAGCACAGGAGAAGCAGGA+GGG - chr1_4:23225287-23225306 Msa0156650:CDS 60.0%
! GGGAGCACAGGAGAAGCAGG+AGG - chr1_4:23225286-23225305 Msa0156650:CDS 65.0%
! GGGAGCACAGGAGAAGCAGG+AGG - chr1_4:23225286-23225305 Msa0156650:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 23224598 23225569 23224598 ID=Msa0156650;Name=Msa0156650
chr1_4 mRNA 23224598 23225569 23224598 ID=Msa0156650-mRNA-1;Parent=Msa0156650;Name=Msa0156650-mRNA-1;_AED=0.22;_eAED=0.53;_QI=0|-1|0|1|-1|1|1|0|323
chr1_4 exon 23224598 23225569 23224598 ID=Msa0156650-mRNA-1:exon:8150;Parent=Msa0156650-mRNA-1
chr1_4 CDS 23224598 23225569 23224598 ID=Msa0156650-mRNA-1:cds;Parent=Msa0156650-mRNA-1
Gene Sequence

>Msa0156650

ATGCCGGCTACAGCAGGTAGGGTTCGCATGCCTGCGAACAACAGGGTTCACAGTAGTGCAGCCCTCCAAACCCATGGCATATGGCAGAGTGCCATTGGCTATGACCCTTATGCACCTAATAAGGATGACAAGGATGCTTCTCAAAGTCAGCCAAATGCAGGGCCCGATGCAGATAATGCATATGCCAGCTTCCAAGGACTTCTACAGCTTGCTAAGATAACCAATTCTGAAGTGGATGTGTCCCGTGGAGCTTGCAAGAAGTGTGGCCGTGTTGGGCACCTCAAGTTTCAGTGCAAGAACAATGTGAAAATCAAAGATGACAAGGAGGAGAAGGATTTTGATGCAATGCGGTCATTGGGGTTGGTTCGAATGGATAAGTTGAAGGGAAAGGCTGAGAAGGTGGATAAGGGAAGCAATGTTGAGAGCTCAGAAGAGGAGGAAGATGATAGTGAGAGTTCAGATTCTGAGATTGATTCAGAGATCGAGAGAGCTATTGCTAAAAGGTCTGGGAAGAAAGTTAGTGAGAAGAGAGGTTCTTATAGAAAGAAGGATGACTCAGATGATGATGAGTCAGACTCTGACCGAAAGAGAAAAAAGAGAGGTAGGGAAAAGAAAAGGAGTGTTAAGACTAAGACGGACGCTAGTGTTTCAGATGATTCCGTTGAAAGGAGGAGGAGGAAGAAAAAGAGGGAGCACAGGAGAAGCAGGAGGGACAAGTCTCCAGATGACAGTGATGAATATAGGCACAAGAAAAGGAAGAGTAGGAAGGAGAAGAGGAGAAGGAGAAGTCGTGTTTCAGATTCTGATTCTGAAACATCCGAGGATTCTACTTCGCGGCATAAGCGAAAAAGCAAGCGGACTTCATCATCAACTGACAGTGATTCGGGTGATGGATATGATGGTTCAAGGAAGGGTAGGGATATAAAAAAATCAGAAAAGAGGAAGAGACACCACCATGGAGACGATGATTAG

Protein sequence

>Msa0156650

MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDKDASQSQPNAGPDADNAYASFQGLLQLAKITNSEVDVSRGACKKCGRVGHLKFQCKNNVKIKDDKEEKDFDAMRSLGLVRMDKLKGKAEKVDKGSNVESSEEEEDDSESSDSEIDSEIERAIAKRSGKKVSEKRGSYRKKDDSDDDESDSDRKRKKRGREKKRSVKTKTDASVSDDSVERRRRKKKREHRRSRRDKSPDDSDEYRHKKRKSRKEKRRRRSRVSDSDSETSEDSTSRHKRKSKRTSSSTDSDSGDGYDGSRKGRDIKKSEKRKRHHHGDDD*